AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052080.t1 MTR_5g032760 90.400 125 9 1 1 122 40 164 1.18e-45 145
MS.gene052080.t1 MTR_2g097650 100.000 67 0 0 56 122 3 69 4.35e-41 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 24 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGTGGACTAGTGCTTT+TGG 0.225862 2.2:+4859326 MS.gene052080:CDS
AGCATCGCGGGTTATAGTTT+GGG 0.348033 2.2:-4858113 None:intergenic
GAGCATCGCGGGTTATAGTT+TGG 0.349832 2.2:-4858114 None:intergenic
CCGCGATGCTCGCACAATTA+CGG 0.385032 2.2:+4858126 MS.gene052080:CDS
GGTAATGGAGGAGGCGGTGG+TGG 0.419598 2.2:+4859297 MS.gene052080:CDS
TCGTCGCGAGGTGGCAATCC+AGG 0.433703 2.2:-4859261 None:intergenic
AGACTTGATGACAATGGGCC+TGG 0.438601 2.2:+4859243 MS.gene052080:CDS
CGTAATTGTGCGAGCATCGC+GGG 0.445247 2.2:-4858125 None:intergenic
GGTGGTAATGGAGGAGGCGG+TGG 0.465666 2.2:+4859294 MS.gene052080:CDS
ATTAAAATGTGACGCTGCTA+TGG 0.476209 2.2:+4856959 MS.gene052080:CDS
GATGATGGCAATGGTGGTAA+TGG 0.487379 2.2:+4859282 MS.gene052080:CDS
AGATTAGACTTGATGACAAT+GGG 0.494836 2.2:+4859238 MS.gene052080:CDS
TTGCCACCTCGCGACGATGA+TGG 0.502965 2.2:+4859267 MS.gene052080:CDS
CAATGTCTTTAAGAATGTCT+AGG 0.523559 2.2:-4859362 None:intergenic
AAGATTAGACTTGATGACAA+TGG 0.549867 2.2:+4859237 MS.gene052080:CDS
CGCACAATTACGGTTACTCC+TGG 0.560145 2.2:+4858136 MS.gene052080:CDS
GGCAATGGTGGTAATGGAGG+AGG 0.565209 2.2:+4859288 MS.gene052080:CDS
CCTCGCGACGATGATGGCAA+TGG 0.603587 2.2:+4859273 MS.gene052080:CDS
CGCGACGATGATGGCAATGG+TGG 0.606298 2.2:+4859276 MS.gene052080:CDS
AATGGTGGTAATGGAGGAGG+CGG 0.609101 2.2:+4859291 MS.gene052080:CDS
GATGGCAATGGTGGTAATGG+AGG 0.610367 2.2:+4859285 MS.gene052080:CDS
TTGCCATCATCGTCGCGAGG+TGG 0.640575 2.2:-4859270 None:intergenic
CCGTAATTGTGCGAGCATCG+CGG 0.652509 2.2:-4858126 None:intergenic
CCATTGCCATCATCGTCGCG+AGG 0.726947 2.2:-4859273 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATATTTCATAATTA+AGG + chr2.2:4858448-4858467 MS.gene052080:intron 10.0%
!! AAAAAAACTAATAAGATTGT+AGG - chr2.2:4858803-4858822 None:intergenic 15.0%
!! ACAGAATAAAAAATCAATTA+AGG - chr2.2:4859141-4859160 None:intergenic 15.0%
!! ATACCATATAACATAAAAAA+AGG + chr2.2:4856897-4856916 MS.gene052080:CDS 15.0%
!! CAGAATAAAAAATCAATTAA+GGG - chr2.2:4859140-4859159 None:intergenic 15.0%
!! TACCATATAACATAAAAAAA+GGG + chr2.2:4856898-4856917 MS.gene052080:CDS 15.0%
!! TATATCATAATCCAATATAA+CGG + chr2.2:4857314-4857333 MS.gene052080:intron 15.0%
!!! ATCAATTAACAGTTTTATTT+TGG - chr2.2:4857166-4857185 None:intergenic 15.0%
!! CAACAACAGTAAATTTATAA+AGG + chr2.2:4858692-4858711 MS.gene052080:intron 20.0%
!! TATATTTGTATACATAGACA+AGG - chr2.2:4859184-4859203 None:intergenic 20.0%
!! TTAAAGGAAAATAACAAGAA+TGG - chr2.2:4857625-4857644 None:intergenic 20.0%
!!! AATAATTTTTATCTTGCAAG+GGG + chr2.2:4857187-4857206 MS.gene052080:intron 20.0%
!!! AATTGCTAATTTTGTAGAAA+AGG - chr2.2:4859094-4859113 None:intergenic 20.0%
!!! ATGGAAATTTTGGATTTTAT+TGG + chr2.2:4857949-4857968 MS.gene052080:intron 20.0%
!!! ATTTTTTATAGGATGGAATA+TGG + chr2.2:4857881-4857900 MS.gene052080:intron 20.0%
!!! GAATAATTTTTATCTTGCAA+GGG + chr2.2:4857186-4857205 MS.gene052080:intron 20.0%
!!! TAAAGGATTTTGATATTAGA+AGG + chr2.2:4858709-4858728 MS.gene052080:intron 20.0%
!!! TATGGTATGGTTTTTTATTT+TGG + chr2.2:4856977-4856996 MS.gene052080:intron 20.0%
!!! TGAATAATTTTTATCTTGCA+AGG + chr2.2:4857185-4857204 MS.gene052080:intron 20.0%
! AATCCAAAATTTCCATGATT+CGG - chr2.2:4857945-4857964 None:intergenic 25.0%
! ACTTATCCAAAATTGTTTGT+TGG + chr2.2:4857994-4858013 MS.gene052080:intron 25.0%
! ATAGCATTTGTCATAATATG+TGG + chr2.2:4859027-4859046 MS.gene052080:intron 25.0%
! ATGATGACTAGTATAGAAAA+TGG - chr2.2:4858306-4858325 None:intergenic 25.0%
! ATGCTATATGATATTCTTGT+TGG + chr2.2:4857073-4857092 MS.gene052080:intron 25.0%
! CTATCAGAAACATATATGAA+TGG - chr2.2:4857520-4857539 None:intergenic 25.0%
!! ATCTATTTTCCTATTCTATC+TGG - chr2.2:4857437-4857456 None:intergenic 25.0%
!! CATTCATATATGTTTCTGAT+AGG + chr2.2:4857518-4857537 MS.gene052080:intron 25.0%
!! CATTTGAAGTGCATAAATAA+TGG + chr2.2:4858509-4858528 MS.gene052080:intron 25.0%
!! TCTATTTTCCTATTCTATCT+GGG - chr2.2:4857436-4857455 None:intergenic 25.0%
!!! AACAGGGGATTTTTATTTTT+TGG + chr2.2:4858773-4858792 MS.gene052080:intron 25.0%
!!! TCCAACATCATATCATTTTT+TGG - chr2.2:4858189-4858208 None:intergenic 25.0%
!!! TGCCCTTTTTTTATGTTATA+TGG - chr2.2:4856903-4856922 None:intergenic 25.0%
!!! TGTATTGTTTGTTTTACACT+GGG + chr2.2:4858237-4858256 MS.gene052080:intron 25.0%
!!! TTGTATTGTTTGTTTTACAC+TGG + chr2.2:4858236-4858255 MS.gene052080:intron 25.0%
!!! TTTCTGTAGGCATTTTTTAT+AGG + chr2.2:4857870-4857889 MS.gene052080:intron 25.0%
AAACATATATGAATGGTCAC+TGG - chr2.2:4857513-4857532 None:intergenic 30.0%
AAATCTGTCTACTTAACTGA+AGG + chr2.2:4858749-4858768 MS.gene052080:intron 30.0%
AAGTTTCATATGTATGAGAG+TGG - chr2.2:4857784-4857803 None:intergenic 30.0%
AATCTGTCTACTTAACTGAA+GGG + chr2.2:4858750-4858769 MS.gene052080:intron 30.0%
AATGCCTACAGAAAAATCAA+TGG - chr2.2:4857864-4857883 None:intergenic 30.0%
ACAAAACACTATCTACAGAA+GGG - chr2.2:4858853-4858872 None:intergenic 30.0%
ACATGTAACATTCTGTAGAA+AGG - chr2.2:4858077-4858096 None:intergenic 30.0%
ACCTTACCAACTTATCAAAA+AGG - chr2.2:4857142-4857161 None:intergenic 30.0%
ACTAGTATAGAAAATGGAAG+AGG - chr2.2:4858300-4858319 None:intergenic 30.0%
ATCAGGTTTCTTCTATAGTA+AGG - chr2.2:4857407-4857426 None:intergenic 30.0%
ATGTAACATTCTGTAGAAAG+GGG - chr2.2:4858075-4858094 None:intergenic 30.0%
CATGTAACATTCTGTAGAAA+GGG - chr2.2:4858076-4858095 None:intergenic 30.0%
CATTTGTCATAATATGTGGA+CGG + chr2.2:4859031-4859050 MS.gene052080:intron 30.0%
CTAAATCAATATCAAAGCGT+AGG + chr2.2:4858406-4858425 MS.gene052080:intron 30.0%
GCCAAAAAATGATATGATGT+TGG + chr2.2:4858185-4858204 MS.gene052080:intron 30.0%
TACAAAACACTATCTACAGA+AGG - chr2.2:4858854-4858873 None:intergenic 30.0%
TAGGATTCAACAGAAGTTAA+AGG - chr2.2:4857641-4857660 None:intergenic 30.0%
TCAATAAAGACACTGATGTA+TGG - chr2.2:4858381-4858400 None:intergenic 30.0%
TGCATAAATAATGGCTTTCT+TGG + chr2.2:4858518-4858537 MS.gene052080:intron 30.0%
TGTTTGCTTTCTTTATGCTA+TGG + chr2.2:4857011-4857030 MS.gene052080:intron 30.0%
! AAATGAATAGAGTTGAGTTG+TGG - chr2.2:4859070-4859089 None:intergenic 30.0%
! AAGATTAGACTTGATGACAA+TGG + chr2.2:4859237-4859256 MS.gene052080:CDS 30.0%
! AATCCGAATCATGGAAATTT+TGG + chr2.2:4857939-4857958 MS.gene052080:intron 30.0%
! AGATTAGACTTGATGACAAT+GGG + chr2.2:4859238-4859257 MS.gene052080:CDS 30.0%
! ATCAGTCCTTTTTGATAAGT+TGG + chr2.2:4857133-4857152 MS.gene052080:intron 30.0%
! CAATGTCTTTAAGAATGTCT+AGG - chr2.2:4859365-4859384 None:intergenic 30.0%
! GTTTGTTTGATGGTTTCTTA+TGG + chr2.2:4858930-4858949 MS.gene052080:intron 30.0%
!! ATCTTTTTGTCTGTCATTTC+AGG - chr2.2:4859222-4859241 None:intergenic 30.0%
!!! TCCTTTTTGATAAGTTGGTA+AGG + chr2.2:4857138-4857157 MS.gene052080:intron 30.0%
!!! TGTAGGCATTTTTTATAGGA+TGG + chr2.2:4857874-4857893 MS.gene052080:intron 30.0%
!!! TGTTCCATTGATTTTTCTGT+AGG + chr2.2:4857857-4857876 MS.gene052080:intron 30.0%
AACCATCAAACAAACACACT+TGG - chr2.2:4858925-4858944 None:intergenic 35.0%
AACTGAAACGAAACCATTCT+AGG - chr2.2:4858885-4858904 None:intergenic 35.0%
ACAAGAGGCAATGAAGAAAT+TGG - chr2.2:4857760-4857779 None:intergenic 35.0%
ACTAGGATGCATGATTGTAA+AGG - chr2.2:4858551-4858570 None:intergenic 35.0%
ATCGAAAACCCAGATAGAAT+AGG + chr2.2:4857425-4857444 MS.gene052080:intron 35.0%
ATTAAAATGTGACGCTGCTA+TGG + chr2.2:4856959-4856978 MS.gene052080:CDS 35.0%
CAATGCAAAGAAGCTAGAAA+AGG + chr2.2:4858654-4858673 MS.gene052080:intron 35.0%
CGATATTCTGATGTCTTGTA+TGG + chr2.2:4858021-4858040 MS.gene052080:intron 35.0%
CTTACTTTCAATCCGAATCA+TGG + chr2.2:4857930-4857949 MS.gene052080:intron 35.0%
GATATAAAATCCCGCCATAT+TGG - chr2.2:4857300-4857319 None:intergenic 35.0%
GATCAAGATAGGAAAGTGAT+AGG - chr2.2:4857660-4857679 None:intergenic 35.0%
GCAATGAAGAAATTGGAACT+AGG - chr2.2:4857753-4857772 None:intergenic 35.0%
GCTTTCTTTATGCTATGGTA+TGG + chr2.2:4857016-4857035 MS.gene052080:intron 35.0%
TCATATTCGGATGTCTTGTA+TGG + chr2.2:4858047-4858066 MS.gene052080:intron 35.0%
TCTTGTATGGTGCTCATATT+CGG + chr2.2:4858034-4858053 MS.gene052080:intron 35.0%
TGTGCAAAAGGTCTATGTTA+GGG + chr2.2:4857557-4857576 MS.gene052080:intron 35.0%
TTGTAGTCTGTTTCCTAGAA+TGG + chr2.2:4858869-4858888 MS.gene052080:intron 35.0%
TTGTGCAAAAGGTCTATGTT+AGG + chr2.2:4857556-4857575 MS.gene052080:intron 35.0%
! ACATAGACCTTTTGCACAAA+AGG - chr2.2:4857555-4857574 None:intergenic 35.0%
! CGTAGACCAACAAACAATTT+TGG - chr2.2:4858003-4858022 None:intergenic 35.0%
! CTTTTGACCTTTTGTGCAAA+AGG + chr2.2:4857545-4857564 MS.gene052080:intron 35.0%
! CTTTTGCACAAAAGGTCAAA+AGG - chr2.2:4857547-4857566 None:intergenic 35.0%
! TGTTTGATGGTTTCTTATGG+AGG + chr2.2:4858933-4858952 MS.gene052080:intron 35.0%
!! TTACCGGTGTTGTCAAATAT+CGG + chr2.2:4857221-4857240 MS.gene052080:intron 35.0%
!! TTTGAGTTGGACTTATTACC+AGG - chr2.2:4858157-4858176 None:intergenic 35.0%
!!! TTGGCAGAAGTTTTTTGAGT+TGG - chr2.2:4858170-4858189 None:intergenic 35.0%
AAACAGTTAGCAGCATGTGA+CGG - chr2.2:4857688-4857707 None:intergenic 40.0%
AACTATGTCCCATTGAGTCA+TGG - chr2.2:4858595-4858614 None:intergenic 40.0%
ATATTGGCCGAAATTTGGCA+TGG - chr2.2:4857284-4857303 None:intergenic 40.0%
ATGACTCAATGGGACATAGT+TGG + chr2.2:4858594-4858613 MS.gene052080:intron 40.0%
ATGCCAAATTTCGGCCAATA+TGG + chr2.2:4857283-4857302 MS.gene052080:intron 40.0%
ATGTATGAGAGTGGTACAAG+AGG - chr2.2:4857775-4857794 None:intergenic 40.0%
CAATCATGCATCCTAGTGAT+TGG + chr2.2:4858554-4858573 MS.gene052080:intron 40.0%
CTACTTAACTGAAGGGAACA+GGG + chr2.2:4858757-4858776 MS.gene052080:intron 40.0%
GAACTAGGAAGAGACTAAAG+TGG - chr2.2:4857738-4857757 None:intergenic 40.0%
GATATTTGACAACACCGGTA+AGG - chr2.2:4857222-4857241 None:intergenic 40.0%
GTCCAAGTGTGTTTGTTTGA+TGG + chr2.2:4858920-4858939 MS.gene052080:intron 40.0%
GTGCAAAAGGTCTATGTTAG+GGG + chr2.2:4857558-4857577 MS.gene052080:intron 40.0%
TAATAGAGACTGCAACAAGC+AGG + chr2.2:4857471-4857490 MS.gene052080:intron 40.0%
TACTTAACTGAAGGGAACAG+GGG + chr2.2:4858758-4858777 MS.gene052080:intron 40.0%
TCTACTTAACTGAAGGGAAC+AGG + chr2.2:4858756-4858775 MS.gene052080:intron 40.0%
TGCAAAAGGTCTATGTTAGG+GGG + chr2.2:4857559-4857578 MS.gene052080:intron 40.0%
TGTAGGTCATACCAATCACT+AGG - chr2.2:4858568-4858587 None:intergenic 40.0%
TTTAGCATCTCCCAATGTGT+TGG + chr2.2:4858274-4858293 MS.gene052080:intron 40.0%
! ATAGTTGGTTTAGGCGATAG+AGG + chr2.2:4858609-4858628 MS.gene052080:intron 40.0%
! ATATGAATGGTCACTGGTCT+TGG - chr2.2:4857507-4857526 None:intergenic 40.0%
! CAATGGGACATAGTTGGTTT+AGG + chr2.2:4858600-4858619 MS.gene052080:intron 40.0%
! TGCTTGTTGCAGTCTCTATT+AGG - chr2.2:4857472-4857491 None:intergenic 40.0%
! TGTTTTACACTGGGACAAAC+TGG + chr2.2:4858246-4858265 MS.gene052080:intron 40.0%
! TTCTATCTGGGTTTTCGATC+AGG - chr2.2:4857424-4857443 None:intergenic 40.0%
!! CTAGTGCTTTTGGGTATTCT+TGG + chr2.2:4859336-4859355 MS.gene052080:CDS 40.0%
!! GGAGGTTTCTTTTGAAGAAC+TGG + chr2.2:4858951-4858970 MS.gene052080:intron 40.0%
!! TTCTAGCTTCTTTGCATTGC+AGG - chr2.2:4858653-4858672 None:intergenic 40.0%
AACAGTTAGCAGCATGTGAC+GGG - chr2.2:4857687-4857706 None:intergenic 45.0%
AATATAACGGCGCCACAAAG+TGG + chr2.2:4857327-4857346 MS.gene052080:intron 45.0%
AATGGAAGAGGCCAACACAT+TGG - chr2.2:4858288-4858307 None:intergenic 45.0%
AATGTGACGCTGCTATGGTA+TGG + chr2.2:4856964-4856983 MS.gene052080:intron 45.0%
ACTTTGTGGCGCCGTTATAT+TGG - chr2.2:4857328-4857347 None:intergenic 45.0%
AGGGGAGCTTAATTCCTTAC+CGG + chr2.2:4857205-4857224 MS.gene052080:intron 45.0%
ATGGAAGAGGCCAACACATT+GGG - chr2.2:4858287-4858306 None:intergenic 45.0%
CAAAAGGTCTATGTTAGGGG+GGG + chr2.2:4857561-4857580 MS.gene052080:intron 45.0%
CAAATTTCGGCCAATATGGC+GGG + chr2.2:4857287-4857306 MS.gene052080:intron 45.0%
CCAAATTTCGGCCAATATGG+CGG + chr2.2:4857286-4857305 MS.gene052080:intron 45.0%
CTAGGAAGAGACTAAAGTGG+AGG - chr2.2:4857735-4857754 None:intergenic 45.0%
GCAAAAGGTCTATGTTAGGG+GGG + chr2.2:4857560-4857579 MS.gene052080:intron 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr2.2:4857227-4857246 MS.gene052080:intron 45.0%
TACAGCCTCCATGACTCAAT+GGG + chr2.2:4858584-4858603 MS.gene052080:intron 45.0%
TATGTCCCATTGAGTCATGG+AGG - chr2.2:4858592-4858611 None:intergenic 45.0%
TGGCCGATATTTGACAACAC+CGG - chr2.2:4857227-4857246 None:intergenic 45.0%
TTGTCAAATATCGGCCATGG+TGG + chr2.2:4857230-4857249 MS.gene052080:intron 45.0%
! AGCATCGCGGGTTATAGTTT+GGG - chr2.2:4858116-4858135 None:intergenic 45.0%
! GATGATGGCAATGGTGGTAA+TGG + chr2.2:4859282-4859301 MS.gene052080:CDS 45.0%
! TGACGGGTAAGGATCAAGAT+AGG - chr2.2:4857671-4857690 None:intergenic 45.0%
!! ATATCGGCCATGGTGGATAT+TGG + chr2.2:4857237-4857256 MS.gene052080:intron 45.0%
!! GCAGCGTCACATTTTAATCG+AGG - chr2.2:4856957-4856976 None:intergenic 45.0%
!!! GGATATTGGTGGTGGCTTTT+GGG + chr2.2:4857251-4857270 MS.gene052080:intron 45.0%
!!! GGTGGTGGTAATTTTTCAGG+TGG + chr2.2:4859312-4859331 MS.gene052080:CDS 45.0%
!!! TCAGGTGGACTAGTGCTTTT+GGG + chr2.2:4859327-4859346 MS.gene052080:CDS 45.0%
!!! TGGATATTGGTGGTGGCTTT+TGG + chr2.2:4857250-4857269 MS.gene052080:intron 45.0%
!!! TTCAGGTGGACTAGTGCTTT+TGG + chr2.2:4859326-4859345 MS.gene052080:CDS 45.0%
CATTGAGTCATGGAGGCTGT+AGG - chr2.2:4858585-4858604 None:intergenic 50.0%
CCGCCATATTGGCCGAAATT+TGG - chr2.2:4857289-4857308 None:intergenic 50.0%
CGCACAATTACGGTTACTCC+TGG + chr2.2:4858136-4858155 MS.gene052080:CDS 50.0%
CTACAGCCTCCATGACTCAA+TGG + chr2.2:4858583-4858602 MS.gene052080:intron 50.0%
CTCACCGCCATGCCAAATTT+CGG + chr2.2:4857274-4857293 MS.gene052080:intron 50.0%
GAGCCAAAATCCTGCCAAAC+CGG - chr2.2:4857353-4857372 None:intergenic 50.0%
GTAAGGAGCAGTGTTGCCAA+TGG - chr2.2:4857390-4857409 None:intergenic 50.0%
TTGGCCGAAATTTGGCATGG+CGG - chr2.2:4857281-4857300 None:intergenic 50.0%
! AGACTTGATGACAATGGGCC+TGG + chr2.2:4859243-4859262 MS.gene052080:CDS 50.0%
! GAGCATCGCGGGTTATAGTT+TGG - chr2.2:4858117-4858136 None:intergenic 50.0%
! GTTGGTTTAGGCGATAGAGG+TGG + chr2.2:4858612-4858631 MS.gene052080:intron 50.0%
!! AATGGTGGTAATGGAGGAGG+CGG + chr2.2:4859291-4859310 MS.gene052080:CDS 50.0%
!! GATGGCAATGGTGGTAATGG+AGG + chr2.2:4859285-4859304 MS.gene052080:CDS 50.0%
!! GGCGGTGGTGGTAATTTTTC+AGG + chr2.2:4859309-4859328 MS.gene052080:CDS 50.0%
!! TTAGCAGCATGTGACGGGTA+AGG - chr2.2:4857682-4857701 None:intergenic 50.0%
AGGAGCAGTGTTGCCAATGG+CGG - chr2.2:4857387-4857406 None:intergenic 55.0%
CCGCGATGCTCGCACAATTA+CGG + chr2.2:4858126-4858145 MS.gene052080:CDS 55.0%
GCCACCACCAATATCCACCA+TGG - chr2.2:4857247-4857266 None:intergenic 55.0%
! CCGTAATTGTGCGAGCATCG+CGG - chr2.2:4858129-4858148 None:intergenic 55.0%
! CGTAATTGTGCGAGCATCGC+GGG - chr2.2:4858128-4858147 None:intergenic 55.0%
!! GCCATGGTGGATATTGGTGG+TGG + chr2.2:4857243-4857262 MS.gene052080:intron 55.0%
!! GGCAATGGTGGTAATGGAGG+AGG + chr2.2:4859288-4859307 MS.gene052080:CDS 55.0%
!! TCGGCCATGGTGGATATTGG+TGG + chr2.2:4857240-4857259 MS.gene052080:intron 55.0%
!!! AGGATTTTGGCTCTCCGCCA+TGG + chr2.2:4857360-4857379 MS.gene052080:intron 55.0%
!!! TGGCCGGTTTGGCAGGATTT+TGG + chr2.2:4857347-4857366 MS.gene052080:intron 55.0%
CCATTGCCATCATCGTCGCG+AGG - chr2.2:4859276-4859295 None:intergenic 60.0%
GTGTTGCCAATGGCGGTCCA+TGG - chr2.2:4857380-4857399 None:intergenic 60.0%
TAACGGCGCCACAAAGTGGC+CGG + chr2.2:4857331-4857350 MS.gene052080:intron 60.0%
TTGCCAATGGCGGTCCATGG+CGG - chr2.2:4857377-4857396 None:intergenic 60.0%
TTGCCACCTCGCGACGATGA+TGG + chr2.2:4859267-4859286 MS.gene052080:CDS 60.0%
TTGCCATCATCGTCGCGAGG+TGG - chr2.2:4859273-4859292 None:intergenic 60.0%
! CCTCGCGACGATGATGGCAA+TGG + chr2.2:4859273-4859292 MS.gene052080:CDS 60.0%
! CGCGACGATGATGGCAATGG+TGG + chr2.2:4859276-4859295 MS.gene052080:CDS 60.0%
! CTGCCAAACCGGCCACTTTG+TGG - chr2.2:4857342-4857361 None:intergenic 60.0%
!! CACAAAGTGGCCGGTTTGGC+AGG + chr2.2:4857340-4857359 MS.gene052080:intron 60.0%
GCGCCACAAAGTGGCCGGTT+TGG + chr2.2:4857336-4857355 MS.gene052080:intron 65.0%
TCGTCGCGAGGTGGCAATCC+AGG - chr2.2:4859264-4859283 None:intergenic 65.0%
TCTCCGCCATGGACCGCCAT+TGG + chr2.2:4857371-4857390 MS.gene052080:intron 65.0%
!! GGTAATGGAGGAGGCGGTGG+TGG + chr2.2:4859297-4859316 MS.gene052080:CDS 65.0%
!! GGTGGTAATGGAGGAGGCGG+TGG + chr2.2:4859294-4859313 MS.gene052080:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 4856888 4859434 4856888 ID=MS.gene052080
chr2.2 mRNA 4856888 4859434 4856888 ID=MS.gene052080.t1;Parent=MS.gene052080
chr2.2 exon 4856888 4856980 4856888 ID=MS.gene052080.t1.exon1;Parent=MS.gene052080.t1
chr2.2 CDS 4856888 4856980 4856888 ID=cds.MS.gene052080.t1;Parent=MS.gene052080.t1
chr2.2 exon 4858085 4858157 4858085 ID=MS.gene052080.t1.exon2;Parent=MS.gene052080.t1
chr2.2 CDS 4858085 4858157 4858085 ID=cds.MS.gene052080.t1;Parent=MS.gene052080.t1
chr2.2 exon 4859232 4859434 4859232 ID=MS.gene052080.t1.exon3;Parent=MS.gene052080.t1
chr2.2 CDS 4859232 4859434 4859232 ID=cds.MS.gene052080.t1;Parent=MS.gene052080.t1
Gene Sequence

>MS.gene052080

ATGAGACGCATACCATATAACATAAAAAAAGGGCAGCTTCAGACTTCAGCTTTTCAAACTATATCACCTCGATTAAAATGTGACGCTGCTATGGTATGGTTTTTTATTTTGGAATTTGTTGATTGTTTGCTTTCTTTATGCTATGGTATGGTTATTTTTATTTCTGTTGATTGTTTGCTTTCTTTATGCTATATGATATTCTTGTTGGAAAGTATTAGCAGCGTTTTGTGTTATTGCAATGTCAAATCAGTCCTTTTTGATAAGTTGGTAAGGTTCCAAAATAAAACTGTTAATTGATGAATAATTTTTATCTTGCAAGGGGAGCTTAATTCCTTACCGGTGTTGTCAAATATCGGCCATGGTGGATATTGGTGGTGGCTTTTGGGCTCACCGCCATGCCAAATTTCGGCCAATATGGCGGGATTTTATATCATAATCCAATATAACGGCGCCACAAAGTGGCCGGTTTGGCAGGATTTTGGCTCTCCGCCATGGACCGCCATTGGCAACACTGCTCCTTACTATAGAAGAAACCTGATCGAAAACCCAGATAGAATAGGAAAATAGATTATAAAATGATACCTAATAGAGACTGCAACAAGCAGGCAGACTGCAACCAAGACCAGTGACCATTCATATATGTTTCTGATAGGAGACCTTTTGACCTTTTGTGCAAAAGGTCTATGTTAGGGGGGGTAATGTATTATGTAGAGATAGAAATGTAACTAACAGTTCCATTCTTGTTATTTTCCTTTAACTTCTGTTGAATCCTATCACTTTCCTATCTTGATCCTTACCCGTCACATGCTGCTAACTGTTTACACTGTTTCTCTTCTATCTGAATCCTCCACTTTAGTCTCTTCCTAGTTCCAATTTCTTCATTGCCTCTTGTACCACTCTCATACATATGAAACTTATTAAGTAGAGAAGTTTAATGTCTGTTTGTTGACTGTTGATTGATTCGCTGCATGTTCCATTGATTTTTCTGTAGGCATTTTTTATAGGATGGAATATGGAAGTAAATGTTGTTTGATCTTTTATTCTTACTTTCAATCCGAATCATGGAAATTTTGGATTTTATTGGTGAATCATTGACTAATAGAAAAACTTATCCAAAATTGTTTGTTGGTCTACGATATTCTGATGTCTTGTATGGTGCTCATATTCGGATGTCTTGTATGGCACCCCTTTCTACAGAATGTTACATGTGCTGCTGCTGCTGCAACCCAAACTATAACCCGCGATGCTCGCACAATTACGGTTACTCCTGGTAATAAGTCCAACTCAAAAAACTTCTGCCAAAAAATGATATGATGTTGGAGAAAGTATATAATGTTAGATTGCTAAGTTGTATTGTTTGTTTTACACTGGGACAAACTGGAACTATTTAGCATCTCCCAATGTGTTGGCCTCTTCCATTTTCTATACTAGTCATCATGTGCATATTAGTAAATAGTTTATGTATATAAATTTCATTCTTCTTTCTTCTGCCATACATCAGTGTCTTTATTGAAATAACTAAATCAATATCAAAGCGTAGGTTTTTTATGTGAGAAACAAATATGAATATTTCATAATTAAGGTATGCACACTCAAATGTTTGTTTCTTTCAAATAGAAGTCATTTGAAGTGCATAAATAATGGCTTTCTTGGATCTTTTCCTTTACAATCATGCATCCTAGTGATTGGTATGACCTACAGCCTCCATGACTCAATGGGACATAGTTGGTTTAGGCGATAGAGGTGGTTTTCTTGCTTAATACCTGCAATGCAAAGAAGCTAGAAAAGGAACTCAAATGAGTAGCAACAACAGTAAATTTATAAAGGATTTTGATATTAGAAGGTTAAAATAAATAGTTTCAAATCTGTCTACTTAACTGAAGGGAACAGGGGATTTTTATTTTTTGGTGCTCCTACAATCTTATTAGTTTTTTTTTTGACAACACAATCTTATTAGTTTTTCCCTTCTGTAGATAGTGTTTTGTAGTCTGTTTCCTAGAATGGTTTCGTTTCAGTTTTGTTGTCTTTATTTGTCCAAGTGTGTTTGTTTGATGGTTTCTTATGGAGGTTTCTTTTGAAGAACTGGAAACATTTACTACAAATTGCACGACTTGACATTTTGTAAATAAATAATAATATATAGCATTTGTCATAATATGTGGACGGATACTATTGAAATCCACAACTCAACTCTATTCATTTACCTTTTCTACAAAATTAGCAATTATGTACATGTAAATGTTGTTTCACCCTTAATTGATTTTTTATTCTGTGTTTCGAATAATTATACGTTCCTTGTCTATGTATACAAATATAATTTGCTATCATTTTCCTGAAATGACAGACAAAAAGATTAGACTTGATGACAATGGGCCTGGATTGCCACCTCGCGACGATGATGGCAATGGTGGTAATGGAGGAGGCGGTGGTGGTAATTTTTCAGGTGGACTAGTGCTTTTGGGTATTCTTGGTGTCCTAGACATTCTTAAAGACATTGAGAGTGAAATTCAACGCAAAGTCAAAGATAGCAGATTTGATCAAGCTTGA
Protein sequence

>MS.gene052080.t1

MRRIPYNIKKGQLQTSAFQTISPRLKCDAAMNVTCAAAAATQTITRDARTITVTPDKKIRLDDNGPGLPPRDDDGNGGNGGGGGGNFSGGLVLLGILGVLDILKDIESEIQRKVKDSRFDQA