Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31159.t1 | XP_013442989.1 | 91.2 | 193 | 10 | 2 | 1 | 190 | 1 | 189 | 1.60E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31159.t1 | Q9MA15 | 67.0 | 115 | 38 | 0 | 74 | 188 | 77 | 191 | 1.2e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31159.t1 | A0A072THI5 | 91.2 | 193 | 10 | 2 | 1 | 190 | 1 | 189 | 1.2e-87 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055539 | MS.gene31159 | 0.804878 | 1.75E-49 | -1.69E-46 |
| MS.gene057356 | MS.gene31159 | -0.811124 | 8.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31159.t1 | MTR_0053s0030 | 90.256 | 195 | 12 | 2 | 1 | 192 | 1 | 191 | 1.88e-117 | 350 |
| MS.gene31159.t1 | MTR_4g026450 | 51.961 | 204 | 82 | 5 | 2 | 194 | 7 | 205 | 9.66e-54 | 183 |
| MS.gene31159.t1 | MTR_7g110060 | 86.667 | 45 | 6 | 0 | 177 | 221 | 266 | 310 | 4.70e-18 | 82.0 |
| MS.gene31159.t1 | MTR_1g084760 | 86.667 | 45 | 6 | 0 | 177 | 221 | 266 | 310 | 7.57e-18 | 81.6 |
| MS.gene31159.t1 | MTR_7g110060 | 86.667 | 45 | 6 | 0 | 177 | 221 | 266 | 310 | 7.75e-18 | 81.6 |
| MS.gene31159.t1 | MTR_2g005620 | 84.444 | 45 | 7 | 0 | 177 | 221 | 281 | 325 | 1.52e-17 | 80.9 |
| MS.gene31159.t1 | MTR_7g076030 | 82.222 | 45 | 8 | 0 | 177 | 221 | 225 | 269 | 1.79e-17 | 80.5 |
| MS.gene31159.t1 | MTR_7g076030 | 82.222 | 45 | 8 | 0 | 177 | 221 | 332 | 376 | 2.33e-17 | 80.5 |
| MS.gene31159.t1 | MTR_1g086370 | 84.444 | 45 | 7 | 0 | 177 | 221 | 147 | 191 | 2.43e-17 | 79.3 |
| MS.gene31159.t1 | MTR_1g086370 | 84.444 | 45 | 7 | 0 | 177 | 221 | 233 | 277 | 4.12e-17 | 79.3 |
| MS.gene31159.t1 | MTR_1g086370 | 84.444 | 45 | 7 | 0 | 177 | 221 | 266 | 310 | 4.35e-17 | 79.7 |
| MS.gene31159.t1 | MTR_2g083940 | 80.000 | 45 | 9 | 0 | 177 | 221 | 225 | 269 | 3.92e-16 | 76.6 |
| MS.gene31159.t1 | MTR_2g083940 | 80.000 | 45 | 9 | 0 | 177 | 221 | 279 | 323 | 4.82e-16 | 76.6 |
| MS.gene31159.t1 | MTR_8g432510 | 77.778 | 45 | 10 | 0 | 177 | 221 | 330 | 374 | 1.19e-15 | 75.5 |
| MS.gene31159.t1 | MTR_2g016490 | 73.333 | 45 | 12 | 0 | 177 | 221 | 231 | 275 | 4.48e-15 | 73.6 |
| MS.gene31159.t1 | MTR_6g038750 | 40.860 | 93 | 53 | 2 | 93 | 184 | 78 | 169 | 4.18e-14 | 71.2 |
| MS.gene31159.t1 | MTR_1g046620 | 33.913 | 115 | 76 | 0 | 92 | 206 | 132 | 246 | 8.54e-14 | 70.5 |
| MS.gene31159.t1 | MTR_3g094740 | 41.667 | 96 | 44 | 3 | 110 | 193 | 161 | 256 | 1.12e-11 | 64.3 |
| MS.gene31159.t1 | MTR_3g094740 | 41.667 | 96 | 44 | 3 | 110 | 193 | 161 | 256 | 1.13e-11 | 64.3 |
| MS.gene31159.t1 | MTR_1g009860 | 35.577 | 104 | 61 | 2 | 93 | 190 | 77 | 180 | 2.17e-11 | 63.2 |
| MS.gene31159.t1 | MTR_1g009860 | 35.577 | 104 | 61 | 2 | 93 | 190 | 77 | 180 | 2.53e-11 | 63.2 |
| MS.gene31159.t1 | MTR_8g091710 | 40.367 | 109 | 50 | 5 | 110 | 206 | 152 | 257 | 7.37e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31159.t1 | AT1G79600 | 66.949 | 118 | 36 | 1 | 74 | 188 | 77 | 194 | 1.57e-47 | 166 |
| MS.gene31159.t1 | AT5G14640 | 86.667 | 45 | 6 | 0 | 177 | 221 | 265 | 309 | 5.79e-18 | 82.0 |
| MS.gene31159.t1 | AT5G14640 | 86.667 | 45 | 6 | 0 | 177 | 221 | 265 | 309 | 5.79e-18 | 82.0 |
| MS.gene31159.t1 | AT3G05840 | 86.667 | 45 | 6 | 0 | 177 | 221 | 264 | 308 | 7.34e-18 | 82.0 |
| MS.gene31159.t1 | AT3G05840 | 86.667 | 45 | 6 | 0 | 177 | 221 | 264 | 308 | 7.34e-18 | 82.0 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 147 | 191 | 7.70e-18 | 80.9 |
| MS.gene31159.t1 | AT5G26751 | 86.667 | 45 | 6 | 0 | 177 | 221 | 260 | 304 | 7.95e-18 | 81.6 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G09840 | 84.444 | 45 | 7 | 0 | 177 | 221 | 274 | 318 | 1.38e-17 | 81.3 |
| MS.gene31159.t1 | AT1G57870 | 84.444 | 45 | 7 | 0 | 177 | 221 | 273 | 317 | 1.70e-17 | 80.9 |
| MS.gene31159.t1 | AT1G57870 | 84.444 | 45 | 7 | 0 | 177 | 221 | 273 | 317 | 1.70e-17 | 80.9 |
| MS.gene31159.t1 | AT1G57870 | 84.444 | 45 | 7 | 0 | 177 | 221 | 273 | 317 | 1.70e-17 | 80.9 |
| MS.gene31159.t1 | AT1G57870 | 84.444 | 45 | 7 | 0 | 177 | 221 | 273 | 317 | 1.75e-17 | 80.9 |
| MS.gene31159.t1 | AT4G00720 | 77.778 | 45 | 10 | 0 | 177 | 221 | 329 | 373 | 6.37e-17 | 79.3 |
| MS.gene31159.t1 | AT1G06390 | 80.000 | 45 | 9 | 0 | 177 | 221 | 261 | 305 | 3.63e-16 | 77.0 |
| MS.gene31159.t1 | AT1G06390 | 80.000 | 45 | 9 | 0 | 177 | 221 | 261 | 305 | 3.63e-16 | 77.0 |
| MS.gene31159.t1 | AT2G30980 | 80.000 | 45 | 9 | 0 | 177 | 221 | 263 | 307 | 4.15e-16 | 77.0 |
| MS.gene31159.t1 | AT4G18710 | 77.778 | 45 | 10 | 0 | 177 | 221 | 231 | 275 | 7.49e-16 | 75.9 |
| MS.gene31159.t1 | AT3G24190 | 32.540 | 126 | 85 | 0 | 92 | 217 | 140 | 265 | 6.07e-15 | 73.9 |
| MS.gene31159.t1 | AT4G18710 | 73.333 | 45 | 12 | 0 | 177 | 221 | 225 | 269 | 4.41e-14 | 70.1 |
| MS.gene31159.t1 | AT4G31390 | 37.500 | 120 | 66 | 3 | 93 | 206 | 113 | 229 | 3.21e-12 | 65.9 |
| MS.gene31159.t1 | AT4G31390 | 37.500 | 120 | 66 | 3 | 93 | 206 | 113 | 229 | 3.56e-12 | 65.9 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 293 | 337 | 3.58e-12 | 65.1 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 300 | 344 | 3.70e-12 | 65.1 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 293 | 337 | 3.72e-12 | 65.1 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 293 | 337 | 4.09e-12 | 65.1 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 300 | 344 | 4.21e-12 | 65.1 |
| MS.gene31159.t1 | AT3G61160 | 66.667 | 45 | 15 | 0 | 177 | 221 | 293 | 337 | 4.39e-12 | 65.1 |
Find 55 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGACCATATTCACAAATT+TGG | 0.128326 | 2.4:-6664348 | MS.gene31159:CDS |
| GAATTGTTGGCTTCTAAATA+TGG | 0.152719 | 2.4:-6665482 | MS.gene31159:CDS |
| CATTTGCCCACCTGAATATT+TGG | 0.168236 | 2.4:-6664279 | MS.gene31159:CDS |
| ATGAGTGCTTTGGGTTCATT+TGG | 0.260013 | 2.4:-6664440 | MS.gene31159:CDS |
| TAATTATACCTAGTATAATT+AGG | 0.273993 | 2.4:+6663277 | None:intergenic |
| TGGTCCCAAATTTGTGAATA+TGG | 0.278942 | 2.4:+6664343 | None:intergenic |
| GAGAGTTCTTCCAAATATTC+AGG | 0.282444 | 2.4:+6664269 | None:intergenic |
| TATTTAGAAGCCAACAATTC+AGG | 0.302555 | 2.4:+6665485 | None:intergenic |
| CACTTGATTTCTTCCCTGGT+TGG | 0.307218 | 2.4:+6663307 | None:intergenic |
| AAGACCATATTCACAAATTT+GGG | 0.307258 | 2.4:-6664347 | MS.gene31159:CDS |
| GGAAGAACTCTCTGAGCTTC+AGG | 0.314029 | 2.4:-6664258 | MS.gene31159:intron |
| TCTTATCAGCCACTGTTTCC+TGG | 0.326347 | 2.4:-6663533 | MS.gene31159:intron |
| ACTTGATTTCTTCCCTGGTT+GGG | 0.328331 | 2.4:+6663308 | None:intergenic |
| TCTGTATAGTCCTGAATTGT+TGG | 0.334504 | 2.4:-6665495 | MS.gene31159:CDS |
| GTTGAAATTATGAGTGCTTT+GGG | 0.341997 | 2.4:-6664449 | MS.gene31159:CDS |
| ATCGTACCTTTGGTTAGAAA+TGG | 0.357079 | 2.4:-6665605 | MS.gene31159:CDS |
| GACACTTGATAAGAATAAAA+AGG | 0.358611 | 2.4:-6664387 | MS.gene31159:CDS |
| TGTTGAAATTATGAGTGCTT+TGG | 0.360188 | 2.4:-6664450 | MS.gene31159:CDS |
| CATGCACTTGATTTCTTCCC+TGG | 0.361221 | 2.4:+6663303 | None:intergenic |
| AATTGTTGGCTTCTAAATAT+GGG | 0.410967 | 2.4:-6665481 | MS.gene31159:CDS |
| CTTGATTTCTTCCCTGGTTG+GGG | 0.414502 | 2.4:+6663309 | None:intergenic |
| TACAAGTAACATCGTACCTT+TGG | 0.441869 | 2.4:-6665615 | MS.gene31159:CDS |
| CCTTGATAATTTCCACAAGT+TGG | 0.452229 | 2.4:+6663495 | None:intergenic |
| TCGTTGGATAGGAATTGAAC+TGG | 0.469500 | 2.4:+6665709 | None:intergenic |
| TATTCAGGTGGGCAAATGTC+AGG | 0.469978 | 2.4:+6664284 | None:intergenic |
| CTGAAACGACGTCGTTGGAT+AGG | 0.472321 | 2.4:+6665698 | None:intergenic |
| TGACCTAACTTCACAAAAGT+TGG | 0.472861 | 2.4:+6664323 | None:intergenic |
| TGAGTGCTTTGGGTTCATTT+GGG | 0.475363 | 2.4:-6664439 | MS.gene31159:CDS |
| CACAACCATGTTATTCATCA+TGG | 0.483949 | 2.4:-6665748 | MS.gene31159:CDS |
| CAAAATTCTTGCTGCTGTGG+TGG | 0.496154 | 2.4:-6665651 | MS.gene31159:CDS |
| ATATCATCAGCACGGTTCAA+TGG | 0.498271 | 2.4:+6665560 | None:intergenic |
| CCACTGTTTCCTGGTGAGAG+TGG | 0.506242 | 2.4:-6663524 | MS.gene31159:CDS |
| CCAACTTGTGGAAATTATCA+AGG | 0.511188 | 2.4:-6663495 | MS.gene31159:intron |
| TAGGTCAAGGATTGTCCACT+AGG | 0.515716 | 2.4:-6664307 | MS.gene31159:CDS |
| TATGGTTTAGGTTGTACAAA+GGG | 0.520941 | 2.4:-6664474 | MS.gene31159:intron |
| AAAGGTACGATGTTACTTGT+AGG | 0.523602 | 2.4:+6665617 | None:intergenic |
| GCATGAATCCTAATTATACT+AGG | 0.531370 | 2.4:-6663285 | MS.gene31159:intron |
| TTTGTTCCATTTCTAACCAA+AGG | 0.542965 | 2.4:+6665599 | None:intergenic |
| TGCCTCTGAAACGACGTCGT+TGG | 0.544692 | 2.4:+6665693 | None:intergenic |
| ATCCAACGACGTCGTTTCAG+AGG | 0.546238 | 2.4:-6665695 | MS.gene31159:CDS |
| TCTCAAAATTCTTGCTGCTG+TGG | 0.563774 | 2.4:-6665654 | MS.gene31159:CDS |
| TGGGCAAATGTCAGGCCTAG+TGG | 0.579864 | 2.4:+6664292 | None:intergenic |
| TGGTCTACTCCACTCTCACC+AGG | 0.583110 | 2.4:+6663515 | None:intergenic |
| ATATGGGTCCCAACGCATCA+AGG | 0.588051 | 2.4:-6665465 | MS.gene31159:intron |
| AGTTCTTCCAAATATTCAGG+TGG | 0.604803 | 2.4:+6664272 | None:intergenic |
| TGCTGATGATATTCAAGCTG+AGG | 0.610385 | 2.4:-6665549 | MS.gene31159:CDS |
| TTATGGTTTAGGTTGTACAA+AGG | 0.612841 | 2.4:-6664475 | MS.gene31159:intron |
| CGAGTCCATGATGAATAACA+TGG | 0.613087 | 2.4:+6665743 | None:intergenic |
| TCAATGGAAGTGTAAGAACA+TGG | 0.624343 | 2.4:+6665576 | None:intergenic |
| GTTCTTCCAAATATTCAGGT+GGG | 0.636431 | 2.4:+6664273 | None:intergenic |
| CGTTGGATAGGAATTGAACT+GGG | 0.640236 | 2.4:+6665710 | None:intergenic |
| TGTTATTCATCATGGACTCG+TGG | 0.651746 | 2.4:-6665740 | MS.gene31159:CDS |
| CCACTCTCACCAGGAAACAG+TGG | 0.653830 | 2.4:+6663524 | None:intergenic |
| CAGCTTGAATATCATCAGCA+CGG | 0.663261 | 2.4:+6665552 | None:intergenic |
| GAGTGGAGTAGACCAACTTG+TGG | 0.666033 | 2.4:-6663507 | MS.gene31159:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTGTAGTCAATA+AGG | + | chr2.4:6664033-6664052 | None:intergenic | 15.0% |
| !! | TAATTATACCTAGTATAATT+AGG | + | chr2.4:6665667-6665686 | None:intergenic | 15.0% |
| !! | TATATAATACGAACAAAATA+GGG | - | chr2.4:6663604-6663623 | MS.gene31159:intron | 15.0% |
| !! | TGATTATTATGTACTTTATT+TGG | - | chr2.4:6663840-6663859 | MS.gene31159:intron | 15.0% |
| !! | TTATATAATACGAACAAAAT+AGG | - | chr2.4:6663603-6663622 | MS.gene31159:intron | 15.0% |
| !!! | TATTTTCAGTTTAGTTAATT+CGG | - | chr2.4:6665575-6665594 | MS.gene31159:CDS | 15.0% |
| !!! | TTCAAATATACATAACTTTT+CGG | + | chr2.4:6664104-6664123 | None:intergenic | 15.0% |
| !! | AAAATGCAACTATATAAATG+AGG | + | chr2.4:6664730-6664749 | None:intergenic | 20.0% |
| !! | AAACGAAACAAAAATATGAA+AGG | + | chr2.4:6665550-6665569 | None:intergenic | 20.0% |
| !! | AAATGCAACTATATAAATGA+GGG | + | chr2.4:6664729-6664748 | None:intergenic | 20.0% |
| !! | CAAATTTCAACAACAATATT+TGG | + | chr2.4:6664318-6664337 | None:intergenic | 20.0% |
| ! | AAATCTTTGTAGGTTAATCA+AGG | - | chr2.4:6665703-6665722 | MS.gene31159:CDS | 25.0% |
| ! | AACCAATAAAACCAAAATCA+GGG | + | chr2.4:6664448-6664467 | None:intergenic | 25.0% |
| ! | AACTATATAAATGAGGGAAA+GGG | + | chr2.4:6664723-6664742 | None:intergenic | 25.0% |
| ! | AAGACCATATTCACAAATTT+GGG | - | chr2.4:6664594-6664613 | MS.gene31159:intron | 25.0% |
| ! | AGATGGTTAATGAATATAAC+AGG | + | chr2.4:6664254-6664273 | None:intergenic | 25.0% |
| ! | ATGTATATTTGAACACAGTT+TGG | - | chr2.4:6664111-6664130 | MS.gene31159:intron | 25.0% |
| ! | CAAGAAAGAACTTTCAAAAA+GGG | + | chr2.4:6663692-6663711 | None:intergenic | 25.0% |
| ! | GACACTTGATAAGAATAAAA+AGG | - | chr2.4:6664554-6664573 | MS.gene31159:intron | 25.0% |
| ! | TAACCAATAAAACCAAAATC+AGG | + | chr2.4:6664449-6664468 | None:intergenic | 25.0% |
| ! | TGTCATTAGTTACGATATTT+AGG | + | chr2.4:6664180-6664199 | None:intergenic | 25.0% |
| ! | TTGAATTCAAGCTCATAAAA+AGG | + | chr2.4:6664926-6664945 | None:intergenic | 25.0% |
| ! | TTTCAACAACAATATTTGGA+CGG | + | chr2.4:6664314-6664333 | None:intergenic | 25.0% |
| !! | ATGAATTCAAGTTTGAGTTA+AGG | + | chr2.4:6664355-6664374 | None:intergenic | 25.0% |
| !!! | AATTGTTGGCTTCTAAATAT+GGG | - | chr2.4:6663460-6663479 | MS.gene31159:intron | 25.0% |
| !!! | CTTTTTGAAAGTTCTTTCTT+GGG | - | chr2.4:6663691-6663710 | MS.gene31159:intron | 25.0% |
| !!! | GATTTTGGTTTTATTGGTTA+TGG | - | chr2.4:6664449-6664468 | MS.gene31159:CDS | 25.0% |
| !!! | TGTTTTTAGAGCAAAAGAAT+GGG | - | chr2.4:6664532-6664551 | MS.gene31159:intron | 25.0% |
| AACTAATGACATTCATGATG+TGG | - | chr2.4:6664189-6664208 | MS.gene31159:intron | 30.0% | |
| AATTGGTAGAGCTGTTAAAA+CGG | - | chr2.4:6663730-6663749 | MS.gene31159:intron | 30.0% | |
| ACATATCTTACATCTGTTCT+AGG | - | chr2.4:6665205-6665224 | MS.gene31159:intron | 30.0% | |
| ATAGTACTAGTTCATACATG+TGG | - | chr2.4:6663883-6663902 | MS.gene31159:intron | 30.0% | |
| ATATTTGAACACAGTTTGGT+TGG | - | chr2.4:6664115-6664134 | MS.gene31159:intron | 30.0% | |
| ATTCAAGCTCTTGAACAATT+CGG | - | chr2.4:6664940-6664959 | MS.gene31159:intron | 30.0% | |
| CAACTATATAAATGAGGGAA+AGG | + | chr2.4:6664724-6664743 | None:intergenic | 30.0% | |
| CCAAGAAAGAACTTTCAAAA+AGG | + | chr2.4:6663693-6663712 | None:intergenic | 30.0% | |
| GAACAGATGTAAGATATGTT+TGG | + | chr2.4:6665204-6665223 | None:intergenic | 30.0% | |
| GAAGACCATATTCACAAATT+TGG | - | chr2.4:6664593-6664612 | MS.gene31159:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr2.4:6665097-6665116 | MS.gene31159:intron | 30.0% | |
| GCATGAATCCTAATTATACT+AGG | - | chr2.4:6665656-6665675 | MS.gene31159:CDS | 30.0% | |
| GTAGTACTTGATTCACTAAT+TGG | - | chr2.4:6663713-6663732 | MS.gene31159:intron | 30.0% | |
| GTTGAAATTATGAGTGCTTT+GGG | - | chr2.4:6664492-6664511 | MS.gene31159:intron | 30.0% | |
| TAAACTTGGGAAATCTTTGT+AGG | - | chr2.4:6665693-6665712 | MS.gene31159:CDS | 30.0% | |
| TATTTAGAAGCCAACAATTC+AGG | + | chr2.4:6663459-6663478 | None:intergenic | 30.0% | |
| TCATAAGGCGAAAAAAGTAA+TGG | + | chr2.4:6663514-6663533 | None:intergenic | 30.0% | |
| TGATGTGGTTAATTACAATC+AGG | - | chr2.4:6664204-6664223 | MS.gene31159:intron | 30.0% | |
| TGTTGAAATTATGAGTGCTT+TGG | - | chr2.4:6664491-6664510 | MS.gene31159:intron | 30.0% | |
| TTTGTTCCATTTCTAACCAA+AGG | + | chr2.4:6663345-6663364 | None:intergenic | 30.0% | |
| ! | GTACTTTATTTGGTACTTGT+AGG | - | chr2.4:6663850-6663869 | MS.gene31159:intron | 30.0% |
| ! | TTTTGTGCGATTTGAAAATG+TGG | - | chr2.4:6664809-6664828 | MS.gene31159:intron | 30.0% |
| !! | CCTTTTTGAAAGTTCTTTCT+TGG | - | chr2.4:6663690-6663709 | MS.gene31159:intron | 30.0% |
| !! | GAATTGTTGGCTTCTAAATA+TGG | - | chr2.4:6663459-6663478 | MS.gene31159:intron | 30.0% |
| !! | TATGGTTTAGGTTGTACAAA+GGG | - | chr2.4:6664467-6664486 | MS.gene31159:CDS | 30.0% |
| !! | TTATGGTTTAGGTTGTACAA+AGG | - | chr2.4:6664466-6664485 | MS.gene31159:CDS | 30.0% |
| !!! | AATGTTTTAACGTGTTTTGG+AGG | - | chr2.4:6663563-6663582 | MS.gene31159:intron | 30.0% |
| !!! | CTGTTTTTAGAGCAAAAGAA+TGG | - | chr2.4:6664531-6664550 | MS.gene31159:intron | 30.0% |
| !!! | GGAAATGTTTTAACGTGTTT+TGG | - | chr2.4:6663560-6663579 | MS.gene31159:intron | 30.0% |
| !!! | GGTTTTATTGGTTATGGTTT+AGG | - | chr2.4:6664455-6664474 | MS.gene31159:CDS | 30.0% |
| !!! | TTGCGCACAGATTTTAAAAT+CGG | - | chr2.4:6663539-6663558 | MS.gene31159:intron | 30.0% |
| AAAAGGTTCATGATGAACTC+AGG | + | chr2.4:6664909-6664928 | None:intergenic | 35.0% | |
| AAACGCAGTCAATCATGATT+AGG | - | chr2.4:6664005-6664024 | MS.gene31159:intron | 35.0% | |
| AAGTAAAAACCTTGATGCGT+TGG | + | chr2.4:6663488-6663507 | None:intergenic | 35.0% | |
| AGTAAAAACCTTGATGCGTT+GGG | + | chr2.4:6663487-6663506 | None:intergenic | 35.0% | |
| AGTTCTTCCAAATATTCAGG+TGG | + | chr2.4:6664672-6664691 | None:intergenic | 35.0% | |
| ATATGTTCAAGCTAGTAGCA+TGG | + | chr2.4:6665514-6665533 | None:intergenic | 35.0% | |
| ATCGTACCTTTGGTTAGAAA+TGG | - | chr2.4:6663336-6663355 | MS.gene31159:intron | 35.0% | |
| ATTGGTAGAGCTGTTAAAAC+GGG | - | chr2.4:6663731-6663750 | MS.gene31159:intron | 35.0% | |
| CACAACCATGTTATTCATCA+TGG | - | chr2.4:6663193-6663212 | MS.gene31159:intron | 35.0% | |
| CCAACTTGTGGAAATTATCA+AGG | - | chr2.4:6665446-6665465 | MS.gene31159:intron | 35.0% | |
| GAGAGTTCTTCCAAATATTC+AGG | + | chr2.4:6664675-6664694 | None:intergenic | 35.0% | |
| GCTCAATAGTTTGACTCATT+TGG | - | chr2.4:6664967-6664986 | MS.gene31159:intron | 35.0% | |
| GCTTAGGACATAACAGAATT+AGG | - | chr2.4:6664778-6664797 | MS.gene31159:intron | 35.0% | |
| GGTTGATTACGTTCAATAGA+TGG | + | chr2.4:6664271-6664290 | None:intergenic | 35.0% | |
| GTATGCATGCAATGTAGATT+GGG | - | chr2.4:6664403-6664422 | MS.gene31159:CDS | 35.0% | |
| GTCAGTGCAATTTAAATACG+TGG | + | chr2.4:6664292-6664311 | None:intergenic | 35.0% | |
| GTTAATTACAATCAGGTCGA+TGG | - | chr2.4:6664211-6664230 | MS.gene31159:intron | 35.0% | |
| GTTAATTCGGAAGTTTCATG+TGG | - | chr2.4:6665588-6665607 | MS.gene31159:CDS | 35.0% | |
| GTTCTTCCAAATATTCAGGT+GGG | + | chr2.4:6664671-6664690 | None:intergenic | 35.0% | |
| TACAAGTAACATCGTACCTT+TGG | - | chr2.4:6663326-6663345 | MS.gene31159:intron | 35.0% | |
| TCATGATTGACTGCGTTTAA+TGG | + | chr2.4:6664003-6664022 | None:intergenic | 35.0% | |
| TCTGTATAGTCCTGAATTGT+TGG | - | chr2.4:6663446-6663465 | MS.gene31159:intron | 35.0% | |
| TGACCTAACTTCACAAAAGT+TGG | + | chr2.4:6664621-6664640 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr2.4:6665102-6665121 | MS.gene31159:intron | 35.0% | |
| TGGTCCCAAATTTGTGAATA+TGG | + | chr2.4:6664601-6664620 | None:intergenic | 35.0% | |
| TGTATGCATGCAATGTAGAT+TGG | - | chr2.4:6664402-6664421 | MS.gene31159:CDS | 35.0% | |
| ! | AAAGGTACGATGTTACTTGT+AGG | + | chr2.4:6663327-6663346 | None:intergenic | 35.0% |
| ! | AACACAGTTTGGTTGGTTAA+CGG | - | chr2.4:6664122-6664141 | MS.gene31159:intron | 35.0% |
| ! | ACTTTTGTGAAGTTAGGTCA+AGG | - | chr2.4:6664621-6664640 | MS.gene31159:intron | 35.0% |
| ! | ATTCAACTCATTTTCAACCC+TGG | + | chr2.4:6664835-6664854 | None:intergenic | 35.0% |
| ! | CAATGTAGATTGGGTTTTTG+AGG | - | chr2.4:6664412-6664431 | MS.gene31159:CDS | 35.0% |
| ! | CCTTGATAATTTCCACAAGT+TGG | + | chr2.4:6665449-6665468 | None:intergenic | 35.0% |
| ! | GGGTTGAAAATGAGTTGAAT+TGG | - | chr2.4:6664835-6664854 | MS.gene31159:intron | 35.0% |
| ! | TCAATGGAAGTGTAAGAACA+TGG | + | chr2.4:6663368-6663387 | None:intergenic | 35.0% |
| ! | TTGGTTGGTTAACGGATAAT+CGG | - | chr2.4:6664130-6664149 | MS.gene31159:intron | 35.0% |
| !! | ACATGTTCTATGTGTTGCTT+AGG | - | chr2.4:6664762-6664781 | MS.gene31159:intron | 35.0% |
| !!! | AATTTTGAGACGTTTGAGGT+TGG | + | chr2.4:6663277-6663296 | None:intergenic | 35.0% |
| !!! | CAAGAATTTTGAGACGTTTG+AGG | + | chr2.4:6663281-6663300 | None:intergenic | 35.0% |
| !!! | GACCCTGATTTTGGTTTTAT+TGG | - | chr2.4:6664443-6664462 | MS.gene31159:CDS | 35.0% |
| !!! | GTGTTTTGGAGGTTTTTATG+CGG | - | chr2.4:6663574-6663593 | MS.gene31159:intron | 35.0% |
| ACACAAAGAAGCTAGTTACC+TGG | + | chr2.4:6665329-6665348 | None:intergenic | 40.0% | |
| ACTTGATTTCTTCCCTGGTT+GGG | + | chr2.4:6665636-6665655 | None:intergenic | 40.0% | |
| AGCTCTTGAACAATTCGGTT+CGG | - | chr2.4:6664945-6664964 | MS.gene31159:intron | 40.0% | |
| ATATCATCAGCACGGTTCAA+TGG | + | chr2.4:6663384-6663403 | None:intergenic | 40.0% | |
| CAGCTTGAATATCATCAGCA+CGG | + | chr2.4:6663392-6663411 | None:intergenic | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr2.4:6665104-6665123 | MS.gene31159:intron | 40.0% | |
| CATTTGCCCACCTGAATATT+TGG | - | chr2.4:6664662-6664681 | MS.gene31159:intron | 40.0% | |
| CGAGTCCATGATGAATAACA+TGG | + | chr2.4:6663201-6663220 | None:intergenic | 40.0% | |
| CGTTGGATAGGAATTGAACT+GGG | + | chr2.4:6663234-6663253 | None:intergenic | 40.0% | |
| CTAGCTTCTTTGTGTATGCT+TGG | - | chr2.4:6665334-6665353 | MS.gene31159:intron | 40.0% | |
| CTGTAAAACTGCCCTATGTA+GGG | + | chr2.4:6665169-6665188 | None:intergenic | 40.0% | |
| CTGTGCGCAAGAAATTCATA+AGG | + | chr2.4:6663529-6663548 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr2.4:6665103-6665122 | MS.gene31159:intron | 40.0% | |
| TACTCAGTTGCACCGAATAT+AGG | + | chr2.4:6665249-6665268 | None:intergenic | 40.0% | |
| TCGTTGGATAGGAATTGAAC+TGG | + | chr2.4:6663235-6663254 | None:intergenic | 40.0% | |
| TCTCAAAATTCTTGCTGCTG+TGG | - | chr2.4:6663287-6663306 | MS.gene31159:CDS | 40.0% | |
| TGCTGATGATATTCAAGCTG+AGG | - | chr2.4:6663392-6663411 | MS.gene31159:intron | 40.0% | |
| TGTTATTCATCATGGACTCG+TGG | - | chr2.4:6663201-6663220 | MS.gene31159:intron | 40.0% | |
| ! | ATGAGTGCTTTGGGTTCATT+TGG | - | chr2.4:6664501-6664520 | MS.gene31159:intron | 40.0% |
| ! | GGACCAACTTTTGTGAAGTT+AGG | - | chr2.4:6664615-6664634 | MS.gene31159:intron | 40.0% |
| ! | TGAGTGCTTTGGGTTCATTT+GGG | - | chr2.4:6664502-6664521 | MS.gene31159:intron | 40.0% |
| !! | ATTTTGACAGCTCTACTGGT+TGG | - | chr2.4:6663766-6663785 | MS.gene31159:intron | 40.0% |
| !! | GTACTTGGTGAACTTTTGCT+TGG | - | chr2.4:6665303-6665322 | MS.gene31159:intron | 40.0% |
| !!! | GATTGATTCGACCCTGATTT+TGG | - | chr2.4:6664434-6664453 | MS.gene31159:CDS | 40.0% |
| !!! | GGTTGACGGTGAACTTTTTT+TGG | + | chr2.4:6665148-6665167 | None:intergenic | 40.0% |
| !!! | GTCTATTTTGACAGCTCTAC+TGG | - | chr2.4:6663762-6663781 | MS.gene31159:intron | 40.0% |
| !!! | TGACGGTGAACTTTTTTTGG+TGG | + | chr2.4:6665145-6665164 | None:intergenic | 40.0% |
| ACACCACAGTCATTGACATC+TGG | - | chr2.4:6665268-6665287 | MS.gene31159:intron | 45.0% | |
| AGAGCTCCTGAGCCTATATT+CGG | - | chr2.4:6665234-6665253 | MS.gene31159:intron | 45.0% | |
| CAAAATTCTTGCTGCTGTGG+TGG | - | chr2.4:6663290-6663309 | MS.gene31159:CDS | 45.0% | |
| CACTTGATTTCTTCCCTGGT+TGG | + | chr2.4:6665637-6665656 | None:intergenic | 45.0% | |
| CATGCACTTGATTTCTTCCC+TGG | + | chr2.4:6665641-6665660 | None:intergenic | 45.0% | |
| CCTGTAAAACTGCCCTATGT+AGG | + | chr2.4:6665170-6665189 | None:intergenic | 45.0% | |
| CTTGATTTCTTCCCTGGTTG+GGG | + | chr2.4:6665635-6665654 | None:intergenic | 45.0% | |
| GCGATTTGAAAATGTGGCCA+GGG | - | chr2.4:6664815-6664834 | MS.gene31159:intron | 45.0% | |
| GCGTGAGAAATCAATAGGGT+AGG | - | chr2.4:6663628-6663647 | MS.gene31159:intron | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | - | chr2.4:6665600-6665619 | MS.gene31159:CDS | 45.0% | |
| TAGGTCAAGGATTGTCCACT+AGG | - | chr2.4:6664634-6664653 | MS.gene31159:intron | 45.0% | |
| TATTCAGGTGGGCAAATGTC+AGG | + | chr2.4:6664660-6664679 | None:intergenic | 45.0% | |
| TCTTATCAGCCACTGTTTCC+TGG | - | chr2.4:6665408-6665427 | MS.gene31159:intron | 45.0% | |
| TGACCAGATGTCAATGACTG+TGG | + | chr2.4:6665274-6665293 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr2.4:6665075-6665094 | MS.gene31159:intron | 45.0% | |
| TGCGATTTGAAAATGTGGCC+AGG | - | chr2.4:6664814-6664833 | MS.gene31159:intron | 45.0% | |
| TTCACCGTCAACCCTACATA+GGG | - | chr2.4:6665155-6665174 | MS.gene31159:intron | 45.0% | |
| ! | CCTACATAGGGCAGTTTTAC+AGG | - | chr2.4:6665167-6665186 | MS.gene31159:intron | 45.0% |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | - | chr2.4:6665607-6665626 | MS.gene31159:CDS | 45.0% |
| !! | GCTGTTAAAACGGGCTAAAG+TGG | - | chr2.4:6663740-6663759 | MS.gene31159:intron | 45.0% |
| !!! | AACTTTTTTTGGTGGTGGCC+GGG | + | chr2.4:6665137-6665156 | None:intergenic | 45.0% |
| !!! | CGGTGAACTTTTTTTGGTGG+TGG | + | chr2.4:6665142-6665161 | None:intergenic | 45.0% |
| !!! | GAACTTTTTTTGGTGGTGGC+CGG | + | chr2.4:6665138-6665157 | None:intergenic | 45.0% |
| !! | ATAATTATATATATAAACTT+GGG | - | chr2.4:6665680-6665699 | MS.gene31159:CDS | 5.0% |
| !! | TATAATTATATATATAAACT+TGG | - | chr2.4:6665679-6665698 | MS.gene31159:CDS | 5.0% |
| ACTGCCCTATGTAGGGTTGA+CGG | + | chr2.4:6665162-6665181 | None:intergenic | 50.0% | |
| AGGGCGCGTGAGAAATCAAT+AGG | - | chr2.4:6663623-6663642 | MS.gene31159:intron | 50.0% | |
| ATATGGGTCCCAACGCATCA+AGG | - | chr2.4:6663476-6663495 | MS.gene31159:intron | 50.0% | |
| ATCCAACGACGTCGTTTCAG+AGG | - | chr2.4:6663246-6663265 | MS.gene31159:intron | 50.0% | |
| CTGAAACGACGTCGTTGGAT+AGG | + | chr2.4:6663246-6663265 | None:intergenic | 50.0% | |
| GAGTGGAGTAGACCAACTTG+TGG | - | chr2.4:6665434-6665453 | MS.gene31159:intron | 50.0% | |
| GGAAGAACTCTCTGAGCTTC+AGG | - | chr2.4:6664683-6664702 | MS.gene31159:intron | 50.0% | |
| GGGCGCGTGAGAAATCAATA+GGG | - | chr2.4:6663624-6663643 | MS.gene31159:intron | 50.0% | |
| GTCATTGACATCTGGTCAGC+TGG | - | chr2.4:6665276-6665295 | MS.gene31159:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr2.4:6665074-6665093 | MS.gene31159:intron | 50.0% | |
| GTTCACCGTCAACCCTACAT+AGG | - | chr2.4:6665154-6665173 | MS.gene31159:intron | 50.0% | |
| GTTGCACCGAATATAGGCTC+AGG | + | chr2.4:6665243-6665262 | None:intergenic | 50.0% | |
| ! | TGGTGAACTTTTGCTTGGCC+AGG | - | chr2.4:6665308-6665327 | MS.gene31159:intron | 50.0% |
| !!! | AGGTTTTAGGTACCCCAACC+AGG | - | chr2.4:6665620-6665639 | MS.gene31159:CDS | 50.0% |
| !!! | GGTTTTAGGTACCCCAACCA+GGG | - | chr2.4:6665621-6665640 | MS.gene31159:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr2.4:6665073-6665092 | None:intergenic | 55.0% | |
| CCACTCTCACCAGGAAACAG+TGG | + | chr2.4:6665420-6665439 | None:intergenic | 55.0% | |
| CCACTGTTTCCTGGTGAGAG+TGG | - | chr2.4:6665417-6665436 | MS.gene31159:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr2.4:6665070-6665089 | MS.gene31159:intron | 55.0% | |
| TGGGCAAATGTCAGGCCTAG+TGG | + | chr2.4:6664652-6664671 | None:intergenic | 55.0% | |
| TGGTCAGCTGGTTGCGTACT+TGG | - | chr2.4:6665288-6665307 | MS.gene31159:intron | 55.0% | |
| TGGTCTACTCCACTCTCACC+AGG | + | chr2.4:6665429-6665448 | None:intergenic | 55.0% | |
| !! | TGCCTCTGAAACGACGTCGT+TGG | + | chr2.4:6663251-6663270 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCGATTCC+CGG | - | chr2.4:6665116-6665135 | MS.gene31159:intron | 60.0% | |
| GGTGGCCGGGAATCGAACCC+CGG | + | chr2.4:6665124-6665143 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6663174 | 6665789 | 6663174 | ID=MS.gene31159 |
| chr2.4 | mRNA | 6663174 | 6665789 | 6663174 | ID=MS.gene31159.t1;Parent=MS.gene31159 |
| chr2.4 | exon | 6665466 | 6665789 | 6665466 | ID=MS.gene31159.t1.exon1;Parent=MS.gene31159.t1 |
| chr2.4 | CDS | 6665466 | 6665789 | 6665466 | ID=cds.MS.gene31159.t1;Parent=MS.gene31159.t1 |
| chr2.4 | exon | 6664259 | 6664486 | 6664259 | ID=MS.gene31159.t1.exon2;Parent=MS.gene31159.t1 |
| chr2.4 | CDS | 6664259 | 6664486 | 6664259 | ID=cds.MS.gene31159.t1;Parent=MS.gene31159.t1 |
| chr2.4 | exon | 6663496 | 6663546 | 6663496 | ID=MS.gene31159.t1.exon3;Parent=MS.gene31159.t1 |
| chr2.4 | CDS | 6663496 | 6663546 | 6663496 | ID=cds.MS.gene31159.t1;Parent=MS.gene31159.t1 |
| chr2.4 | exon | 6663286 | 6663341 | 6663286 | ID=MS.gene31159.t1.exon4;Parent=MS.gene31159.t1 |
| chr2.4 | CDS | 6663286 | 6663341 | 6663286 | ID=cds.MS.gene31159.t1;Parent=MS.gene31159.t1 |
| chr2.4 | exon | 6663174 | 6663201 | 6663174 | ID=MS.gene31159.t1.exon5;Parent=MS.gene31159.t1 |
| chr2.4 | CDS | 6663174 | 6663201 | 6663174 | ID=cds.MS.gene31159.t1;Parent=MS.gene31159.t1 |
| Gene Sequence |
| Protein sequence |
