Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31285.t1 | XP_003597254.2 | 99.1 | 851 | 8 | 0 | 1 | 851 | 1 | 851 | 0.00E+00 | 1462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31285.t1 | Q8R3Q2 | 31.9 | 505 | 279 | 10 | 1 | 455 | 1 | 490 | 7.9e-59 | 230.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31285.t1 | G7IRT9 | 99.1 | 851 | 8 | 0 | 1 | 851 | 1 | 851 | 0.0e+00 | 1462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05026 | MS.gene31285 | 0.820189 | 7.82E-53 | -1.69E-46 |
| MS.gene058937 | MS.gene31285 | 0.980738 | 6.45E-151 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31285.t1 | MTR_2g094550 | 99.060 | 851 | 8 | 0 | 1 | 851 | 1 | 851 | 0.0 | 1735 |
| MS.gene31285.t1 | MTR_2g094550 | 98.942 | 851 | 8 | 1 | 1 | 851 | 1 | 850 | 0.0 | 1730 |
| MS.gene31285.t1 | MTR_2g029960 | 64.478 | 594 | 206 | 3 | 14 | 604 | 4 | 595 | 0.0 | 801 |
| MS.gene31285.t1 | MTR_2g029960 | 63.864 | 559 | 198 | 3 | 1 | 558 | 1 | 556 | 0.0 | 749 |
| MS.gene31285.t1 | MTR_2g029960 | 60.600 | 467 | 179 | 3 | 141 | 604 | 1 | 465 | 0.0 | 590 |
| MS.gene31285.t1 | MTR_2g029960 | 59.629 | 431 | 169 | 3 | 177 | 604 | 1 | 429 | 8.05e-180 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31285.t1 | AT1G07990 | 66.706 | 853 | 231 | 12 | 1 | 851 | 1 | 802 | 0.0 | 1069 |
| MS.gene31285.t1 | AT2G28360 | 62.998 | 854 | 247 | 12 | 1 | 851 | 1 | 788 | 0.0 | 1017 |
| MS.gene31285.t1 | AT3G45190 | 60.023 | 853 | 275 | 9 | 1 | 851 | 1 | 789 | 0.0 | 1004 |
| MS.gene31285.t1 | AT3G45190 | 58.714 | 809 | 268 | 9 | 45 | 851 | 7 | 751 | 0.0 | 922 |
| MS.gene31285.t1 | AT1G07990 | 76.895 | 554 | 124 | 2 | 1 | 554 | 1 | 550 | 0.0 | 868 |
| MS.gene31285.t1 | AT1G30470 | 64.145 | 608 | 211 | 4 | 1 | 604 | 1 | 605 | 0.0 | 775 |
| MS.gene31285.t1 | AT1G30470 | 64.120 | 602 | 211 | 4 | 5 | 604 | 1 | 599 | 0.0 | 764 |
| MS.gene31285.t1 | AT1G30470 | 59.868 | 608 | 194 | 5 | 1 | 604 | 1 | 562 | 0.0 | 693 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTAGATATAAAATTTA+TGG | 0.148472 | 2.4:-7944857 | MS.gene31285:CDS |
| GTTGATAAGACGACTGTTTA+AGG | 0.152841 | 2.4:+7950119 | None:intergenic |
| TTGCATCACATCCATAAAAT+TGG | 0.173077 | 2.4:+7948391 | None:intergenic |
| GATAAAACAGATTCTGCTTT+TGG | 0.203309 | 2.4:+7942789 | None:intergenic |
| TGTTAACAATTCGTGTAATA+TGG | 0.225551 | 2.4:+7946170 | None:intergenic |
| CCAATTGTCTCTGGATTTAC+AGG | 0.227312 | 2.4:+7947557 | None:intergenic |
| CTGCAAGATTGTGATTTAAT+TGG | 0.231092 | 2.4:-7946520 | MS.gene31285:CDS |
| AGATCTCTTCCTTCATGTTT+TGG | 0.239181 | 2.4:-7951073 | None:intergenic |
| CCTGGTCATCACCGAGTCTT+AGG | 0.243722 | 2.4:+7944396 | None:intergenic |
| GATTGGAATCACATCCATTA+TGG | 0.249203 | 2.4:-7948553 | MS.gene31285:CDS |
| AATCCCACTTACTGAGTTTA+GGG | 0.258444 | 2.4:+7947525 | None:intergenic |
| TTCAGTGTGTATTTCTTTGT+TGG | 0.259106 | 2.4:-7947654 | MS.gene31285:CDS |
| TGTTTAAGGCCTTGCATTCT+TGG | 0.259835 | 2.4:+7950133 | None:intergenic |
| GGCTTCGGAATGAATGAAAA+AGG | 0.272701 | 2.4:+7947603 | None:intergenic |
| CGCCAATTGGTTGATTTGAT+TGG | 0.278687 | 2.4:-7948570 | MS.gene31285:CDS |
| GCTTGGGAAGCATAGATTAA+AGG | 0.288099 | 2.4:-7947266 | MS.gene31285:intron |
| AAATCCCACTTACTGAGTTT+AGG | 0.289394 | 2.4:+7947524 | None:intergenic |
| TTTGCCTGATTGGGTGGGAT+GGG | 0.293982 | 2.4:-7942928 | MS.gene31285:CDS |
| AAAGGCCTGACTCAAATTAT+TGG | 0.294251 | 2.4:+7944874 | None:intergenic |
| GGATTACCAGGTAGCAATTC+CGG | 0.303472 | 2.4:-7943059 | MS.gene31285:CDS |
| TGCAAGTGCTGCCAATGATA+TGG | 0.313346 | 2.4:-7943003 | MS.gene31285:CDS |
| GTGATAGGCCTTTGCCTGAT+TGG | 0.320494 | 2.4:-7942938 | MS.gene31285:CDS |
| TGACCAAGAGGTTGCTGCTC+TGG | 0.330490 | 2.4:-7942490 | MS.gene31285:CDS |
| CTTTGCCTGATTGGGTGGGA+TGG | 0.338500 | 2.4:-7942929 | MS.gene31285:CDS |
| GAGGAAGATGTTGAATTTGT+AGG | 0.338717 | 2.4:-7942684 | MS.gene31285:CDS |
| AATTCAACGATGCGAATTAC+TGG | 0.340079 | 2.4:-7942518 | MS.gene31285:CDS |
| CCTTTAGATATAAAATTTAT+GGG | 0.342314 | 2.4:-7944856 | MS.gene31285:CDS |
| CTTTCAACTAAGCCTCAAAT+AGG | 0.348326 | 2.4:-7942831 | MS.gene31285:CDS |
| AAGTATTGTATTATCATGTT+TGG | 0.361474 | 2.4:-7946575 | MS.gene31285:CDS |
| ATGGCAAGCTACCGTGCTTC+AGG | 0.362493 | 2.4:-7945525 | MS.gene31285:CDS |
| CCTTCAGATATGCAAGTTAC+TGG | 0.370355 | 2.4:-7942900 | MS.gene31285:CDS |
| GAACAGATTGTTTATCTGCT+TGG | 0.373694 | 2.4:+7946488 | None:intergenic |
| AGCCAGCCAACAAGGCACTA+TGG | 0.374650 | 2.4:+7948943 | None:intergenic |
| GTTCAAAGCGCCTCCATTCC+CGG | 0.375694 | 2.4:+7943040 | None:intergenic |
| TCCCATAGTGCCTTGTTGGC+TGG | 0.383183 | 2.4:-7948945 | MS.gene31285:CDS |
| TCAGACAAGGAAGAGAGTTT+TGG | 0.389244 | 2.4:-7942960 | MS.gene31285:CDS |
| CGTTGAATTCCTTCATCCCT+GGG | 0.389372 | 2.4:+7942532 | None:intergenic |
| TCGTTGAATTCCTTCATCCC+TGG | 0.390370 | 2.4:+7942531 | None:intergenic |
| TTGCCTGATTGGGTGGGATG+GGG | 0.401767 | 2.4:-7942927 | MS.gene31285:CDS |
| TGTACCTGCTGCTGGAAAAC+AGG | 0.401919 | 2.4:-7946215 | MS.gene31285:CDS |
| GTCACTTATGAATTATGTTC+AGG | 0.402379 | 2.4:-7948766 | MS.gene31285:intron |
| TGATAGGCCTTTGCCTGATT+GGG | 0.407584 | 2.4:-7942937 | MS.gene31285:CDS |
| ATAAAAGTTTACCTCCATAA+TGG | 0.410036 | 2.4:+7948539 | None:intergenic |
| TCGTTCCCATAGTGCCTTGT+TGG | 0.410552 | 2.4:-7948949 | MS.gene31285:CDS |
| GGTTGGAGAGGATGAAGAAT+TGG | 0.412364 | 2.4:-7943138 | MS.gene31285:CDS |
| AAAGTGTTGCCTACAACATA+TGG | 0.414777 | 2.4:-7947304 | MS.gene31285:CDS |
| CCACGTACTGACATGTCTTC+AGG | 0.421842 | 2.4:-7946119 | MS.gene31285:intron |
| TCACCCCATCCCACCCAATC+AGG | 0.423936 | 2.4:+7942924 | None:intergenic |
| GACATGTCAGTACGTGGCTT+CGG | 0.425921 | 2.4:+7946125 | None:intergenic |
| GTCTGTTTACGAACTCCAAC+TGG | 0.428061 | 2.4:-7943283 | MS.gene31285:CDS |
| TTTAGCCAATAATTTGAGTC+AGG | 0.431267 | 2.4:-7944879 | MS.gene31285:CDS |
| GGAACGATTAGGCTCCAAAA+AGG | 0.431912 | 2.4:+7948965 | None:intergenic |
| CATCACCCATTCTGTCGTCT+TGG | 0.441134 | 2.4:+7943252 | None:intergenic |
| GATTACCAGGTAGCAATTCC+GGG | 0.444117 | 2.4:-7943058 | MS.gene31285:CDS |
| TCTCTCTTCCGACAGAAATC+TGG | 0.444223 | 2.4:-7946467 | MS.gene31285:intron |
| TAACATTCTCAACCACATTA+CGG | 0.444643 | 2.4:+7945501 | None:intergenic |
| TCAATCAAATCTTTACTAGT+TGG | 0.445700 | 2.4:+7942756 | None:intergenic |
| TGGTGTAGTGAATTATTATA+TGG | 0.446206 | 2.4:+7946607 | None:intergenic |
| CGGAAATGAAGCTGCAGAAA+AGG | 0.447243 | 2.4:-7946826 | MS.gene31285:CDS |
| CACAGGATGCTGAAAGTAAA+CGG | 0.447488 | 2.4:-7949286 | MS.gene31285:CDS |
| AGCATTGCACCAATTGTCTC+TGG | 0.447625 | 2.4:+7947548 | None:intergenic |
| TTGTTGTTTGCCTAATGATT+CGG | 0.451121 | 2.4:-7948797 | MS.gene31285:CDS |
| GTCCCCTAAAGCGGCAGAAA+AGG | 0.451264 | 2.4:-7942574 | MS.gene31285:CDS |
| AACAATTGCTCAACCTGGGC+TGG | 0.452731 | 2.4:+7949332 | None:intergenic |
| CAGCCAACTGTACCTGCTGC+TGG | 0.452910 | 2.4:-7946223 | MS.gene31285:CDS |
| GAGGGAATAGTCGGGGAAGC+AGG | 0.455511 | 2.4:-7942615 | MS.gene31285:CDS |
| TTCCAATCAAATCAACCAAT+TGG | 0.456758 | 2.4:+7948568 | None:intergenic |
| TGCATCACATCCATAAAATT+GGG | 0.457380 | 2.4:+7948392 | None:intergenic |
| AGCTGTACCATCACTATTTG+AGG | 0.459985 | 2.4:-7942703 | MS.gene31285:CDS |
| ACATAAAGTTTCAGCTGCAT+TGG | 0.460813 | 2.4:+7947878 | None:intergenic |
| GAATTAGGGCTACCTATTTG+AGG | 0.461468 | 2.4:+7942819 | None:intergenic |
| CCTAAGACTCGGTGATGACC+AGG | 0.462555 | 2.4:-7944396 | MS.gene31285:CDS |
| TACTGAGAAAGCTATGGAAC+AGG | 0.463183 | 2.4:-7942646 | MS.gene31285:CDS |
| TGCTGGAAAACAGGCACCAC+GGG | 0.465587 | 2.4:-7946206 | MS.gene31285:CDS |
| AACTTGAACGGTGCTGCTAA+TGG | 0.465600 | 2.4:-7943188 | MS.gene31285:CDS |
| TCTGAAGAAACCCATATCAT+TGG | 0.467122 | 2.4:+7942992 | None:intergenic |
| CTATTTGAGGCTTAGTTGAA+AGG | 0.470356 | 2.4:+7942832 | None:intergenic |
| CTAGTAAAGATTTGATTGAC+GGG | 0.474989 | 2.4:-7942752 | MS.gene31285:CDS |
| CTCAATTCTCCATATGTTGT+AGG | 0.477801 | 2.4:+7947295 | None:intergenic |
| CACAACATCATCTGAGATGA+TGG | 0.477905 | 2.4:-7943219 | MS.gene31285:CDS |
| CCAGGTAGCAATTCCGGGAA+TGG | 0.478811 | 2.4:-7943053 | MS.gene31285:CDS |
| CCTGTAAATCCAGAGACAAT+TGG | 0.480404 | 2.4:-7947557 | MS.gene31285:CDS |
| TATGGGTTTCTTCAGATTTG+AGG | 0.480427 | 2.4:-7942985 | MS.gene31285:CDS |
| TGTTAACAAAATTATTCACT+TGG | 0.480743 | 2.4:-7946155 | MS.gene31285:CDS |
| TGATGTCATCTTGAAGACTT+TGG | 0.486713 | 2.4:-7949120 | MS.gene31285:CDS |
| TGAAGCTGCAGAAAAGGAAA+TGG | 0.489127 | 2.4:-7946820 | MS.gene31285:CDS |
| TCCTATCTTGTAAAGCAGTC+GGG | 0.492489 | 2.4:+7944954 | None:intergenic |
| GCCCGACTGCTTTACAAGAT+AGG | 0.492622 | 2.4:-7944955 | MS.gene31285:CDS |
| ATCCTATCTTGTAAAGCAGT+CGG | 0.495835 | 2.4:+7944953 | None:intergenic |
| CCATTCCCGGAATTGCTACC+TGG | 0.497322 | 2.4:+7943053 | None:intergenic |
| AAGATCAATAACTCGTTGAA+TGG | 0.499006 | 2.4:+7946785 | None:intergenic |
| ATATAAAATTTATGGGAATG+AGG | 0.499725 | 2.4:-7944849 | MS.gene31285:CDS |
| AGAAGAGCTTCTAGATGAAG+AGG | 0.501013 | 2.4:-7950163 | MS.gene31285:CDS |
| AACTTCTTCAGTGGATTACC+AGG | 0.501539 | 2.4:-7943071 | MS.gene31285:CDS |
| AGCGTAACAATTGCTCAACC+TGG | 0.501870 | 2.4:+7949327 | None:intergenic |
| AATACTGAAGACGGCAACCC+AGG | 0.502432 | 2.4:-7942549 | MS.gene31285:CDS |
| CTCTGAAAGAGGGAATAGTC+GGG | 0.506411 | 2.4:-7942623 | MS.gene31285:CDS |
| TTTGTAGGCGTAGAGTTAGA+AGG | 0.506864 | 2.4:-7942669 | MS.gene31285:CDS |
| GACTTTGGTTGATGAAGAAG+AGG | 0.508282 | 2.4:-7949105 | MS.gene31285:intron |
| GCACCACGGGCGGGAAACAT+TGG | 0.509528 | 2.4:-7946193 | MS.gene31285:CDS |
| ACTAGTAAAGATTTGATTGA+CGG | 0.509913 | 2.4:-7942753 | MS.gene31285:CDS |
| ACTCCAGAGCAGCAACCTCT+TGG | 0.510379 | 2.4:+7942487 | None:intergenic |
| TGCATTCCAAGACGACAGAA+TGG | 0.511665 | 2.4:-7943258 | MS.gene31285:CDS |
| GCATTGGCATTAACTTCAGC+AGG | 0.513752 | 2.4:+7947894 | None:intergenic |
| AGAAACAGACTCACCTCCCC+TGG | 0.514825 | 2.4:+7944378 | None:intergenic |
| GTACCTCATCATCTCGATCA+TGG | 0.515190 | 2.4:+7944637 | None:intergenic |
| GCTCTGAAAGAGGGAATAGT+CGG | 0.517610 | 2.4:-7942624 | MS.gene31285:CDS |
| GAGAATTGAGACCTCCGCTT+GGG | 0.518527 | 2.4:-7947282 | MS.gene31285:CDS |
| GCTCATACATGTGTTGGCTT+CGG | 0.518793 | 2.4:+7947588 | None:intergenic |
| TTGCCTAATGATTCGGAAGA+CGG | 0.519594 | 2.4:-7948790 | MS.gene31285:CDS |
| CAACAGTGACGATGAGGTAG+TGG | 0.520715 | 2.4:-7943159 | MS.gene31285:CDS |
| TTAGGGACGATATGACTACT+TGG | 0.522762 | 2.4:+7944414 | None:intergenic |
| GCATTCCAAGACGACAGAAT+GGG | 0.525757 | 2.4:-7943257 | MS.gene31285:CDS |
| AGACGGCAACCCAGGGATGA+AGG | 0.529686 | 2.4:-7942541 | MS.gene31285:CDS |
| AAGGCACTATGGGAACGATT+AGG | 0.529939 | 2.4:+7948954 | None:intergenic |
| TTTCCAGCAGCAGGTACAGT+TGG | 0.530007 | 2.4:+7946220 | None:intergenic |
| CTGGTCATCACCGAGTCTTA+GGG | 0.530018 | 2.4:+7944397 | None:intergenic |
| CTGCTTTACAAGATAGGATG+AGG | 0.530195 | 2.4:-7944949 | MS.gene31285:CDS |
| GCAAGTGCTGCCAATGATAT+GGG | 0.530880 | 2.4:-7943002 | MS.gene31285:CDS |
| AAAGATTTGATTGACGGGGT+TGG | 0.531373 | 2.4:-7942747 | MS.gene31285:CDS |
| GCCAGCCAACAAGGCACTAT+GGG | 0.532392 | 2.4:+7948944 | None:intergenic |
| GACTCATCATGATCCACAAA+GGG | 0.535504 | 2.4:+7942864 | None:intergenic |
| TAGGCCTTTGCCTGATTGGG+TGG | 0.535818 | 2.4:-7942934 | MS.gene31285:CDS |
| TGCAAGCATGAATCCCTTTG+TGG | 0.535935 | 2.4:-7942877 | MS.gene31285:CDS |
| AAAATAGTGAGTGGAGTGAA+TGG | 0.536200 | 2.4:-7945544 | MS.gene31285:CDS |
| ATACAATACTTTCTACATGA+TGG | 0.537091 | 2.4:+7946587 | None:intergenic |
| TTTAATTGCTAGAGTAGATG+AGG | 0.537785 | 2.4:+7947839 | None:intergenic |
| ACACCGTCTTCCGAATCATT+AGG | 0.540857 | 2.4:+7948787 | None:intergenic |
| ATGTTAACCGTTGGGCGTGT+GGG | 0.540885 | 2.4:-7945484 | MS.gene31285:intron |
| GACAGAATGGGTGATGCAAA+CGG | 0.542331 | 2.4:-7943245 | MS.gene31285:CDS |
| GTTGGCTGGCTACTTTAGCA+AGG | 0.545574 | 2.4:-7948931 | MS.gene31285:intron |
| GGAAAACAGGCACCACGGGC+GGG | 0.546553 | 2.4:-7946202 | MS.gene31285:CDS |
| TTTGTGGATCATGATGAGTC+TGG | 0.548518 | 2.4:-7942861 | MS.gene31285:CDS |
| TATGGAACAGGCTCTGAAAG+AGG | 0.551064 | 2.4:-7942634 | MS.gene31285:CDS |
| TGGAAAACAGGCACCACGGG+CGG | 0.553029 | 2.4:-7946203 | MS.gene31285:CDS |
| AGATTGTGATTTAATTGGAA+GGG | 0.557726 | 2.4:-7946515 | MS.gene31285:CDS |
| ATGATGACGACATTCATGAC+AGG | 0.558327 | 2.4:-7944919 | MS.gene31285:CDS |
| TATGGATGTGATGCAATGGT+TGG | 0.558833 | 2.4:-7948384 | MS.gene31285:CDS |
| CAGATTTGAGGCATCAGACA+AGG | 0.559030 | 2.4:-7942973 | MS.gene31285:CDS |
| GGTTGAGAATGTTAACCGTT+GGG | 0.559190 | 2.4:-7945492 | MS.gene31285:CDS |
| AGAAGGTACTGAGAAAGCTA+TGG | 0.560463 | 2.4:-7942652 | MS.gene31285:CDS |
| TATCAACAATCATCTCAAGC+AGG | 0.565593 | 2.4:+7948351 | None:intergenic |
| AATGTTAACCGTTGGGCGTG+TGG | 0.566434 | 2.4:-7945485 | MS.gene31285:CDS |
| GAAAAGGAAAATACTGAAGA+CGG | 0.566673 | 2.4:-7942558 | MS.gene31285:CDS |
| AAGATTGTGATTTAATTGGA+AGG | 0.568905 | 2.4:-7946516 | MS.gene31285:CDS |
| TGGCCAATGTTTCCCGCCCG+TGG | 0.568977 | 2.4:+7946190 | None:intergenic |
| TCTGGATTTACAGGAATATG+TGG | 0.570047 | 2.4:+7947566 | None:intergenic |
| AAAATCTCGCAGGCAATGAA+CGG | 0.571625 | 2.4:+7949155 | None:intergenic |
| GTCTTGGAATGCAAACCAGT+TGG | 0.574044 | 2.4:+7943268 | None:intergenic |
| GGAGAATTGAGACCTCCGCT+TGG | 0.574108 | 2.4:-7947283 | MS.gene31285:CDS |
| AGGCCTTTGCCTGATTGGGT+GGG | 0.575500 | 2.4:-7942933 | MS.gene31285:CDS |
| CGTTTACTTTCAGCATCCTG+TGG | 0.581091 | 2.4:+7949287 | None:intergenic |
| TGGGAATGAGGATAATGAAG+AGG | 0.583867 | 2.4:-7944837 | MS.gene31285:intron |
| CACATTACGGTCCTGAAGCA+CGG | 0.590677 | 2.4:+7945514 | None:intergenic |
| TTACTTTCAGCATCCTGTGG+TGG | 0.592020 | 2.4:+7949290 | None:intergenic |
| ATGGAACAGGCTCTGAAAGA+GGG | 0.594568 | 2.4:-7942633 | MS.gene31285:CDS |
| GGAAGTAATCCAAGAATGCA+AGG | 0.596486 | 2.4:-7950142 | MS.gene31285:CDS |
| AGTGACGATGAGGTAGTGGT+TGG | 0.598469 | 2.4:-7943155 | MS.gene31285:CDS |
| ATACTGAAGACGGCAACCCA+GGG | 0.598992 | 2.4:-7942548 | MS.gene31285:CDS |
| GGTAGCAATTCCGGGAATGG+AGG | 0.599278 | 2.4:-7943050 | MS.gene31285:CDS |
| CTGCTGGAAAACAGGCACCA+CGG | 0.599672 | 2.4:-7946207 | MS.gene31285:CDS |
| AAGAAACGTGTCCCCTAAAG+CGG | 0.599693 | 2.4:-7942583 | MS.gene31285:CDS |
| GAAAAGGAAATGGTCAACTC+AGG | 0.600458 | 2.4:-7946810 | MS.gene31285:CDS |
| GAGCTTACCCACACGCCCAA+CGG | 0.603966 | 2.4:+7945477 | None:intergenic |
| TGTAGGCAACACTTTCTCAT+CGG | 0.605404 | 2.4:+7947312 | None:intergenic |
| CCAGTAACTTGCATATCTGA+AGG | 0.606669 | 2.4:+7942900 | None:intergenic |
| TCCATGTACCAGATTTCTGT+CGG | 0.606949 | 2.4:+7946459 | None:intergenic |
| TCTAGCACAAACTTCTTCAG+TGG | 0.607094 | 2.4:-7943080 | MS.gene31285:CDS |
| CGATGAGGTAGTGGTTGGAG+AGG | 0.610100 | 2.4:-7943150 | MS.gene31285:CDS |
| CATCCCACCCAATCAGGCAA+AGG | 0.611348 | 2.4:+7942930 | None:intergenic |
| CGTGCTTCAGGACCGTAATG+TGG | 0.613132 | 2.4:-7945513 | MS.gene31285:CDS |
| AATCTATGCTTCCCAAGCGG+AGG | 0.614776 | 2.4:+7947271 | None:intergenic |
| GCTAAAGTAGCCAGCCAACA+AGG | 0.619095 | 2.4:+7948935 | None:intergenic |
| ACATCTTCCTCAAATAGTGA+TGG | 0.621746 | 2.4:+7942696 | None:intergenic |
| TTACTGGAGGGTTGACCAAG+AGG | 0.625304 | 2.4:-7942502 | MS.gene31285:CDS |
| GCGTAACAATTGCTCAACCT+GGG | 0.627719 | 2.4:+7949328 | None:intergenic |
| GTCATATCGTCCCTAAGACT+CGG | 0.627979 | 2.4:-7944407 | MS.gene31285:CDS |
| CATTATCGAAGAACCACCAC+AGG | 0.628589 | 2.4:-7949303 | MS.gene31285:CDS |
| TCAACGATGCGAATTACTGG+AGG | 0.629037 | 2.4:-7942515 | MS.gene31285:CDS |
| TATGTGGCTCATACATGTGT+TGG | 0.633097 | 2.4:+7947582 | None:intergenic |
| TGCTTTACAAGATAGGATGA+GGG | 0.635330 | 2.4:-7944948 | MS.gene31285:CDS |
| CAATTAAACTCTCAAGCCCG+AGG | 0.636822 | 2.4:-7947824 | MS.gene31285:intron |
| CAACCATGATCGAGATGATG+AGG | 0.637857 | 2.4:-7944640 | MS.gene31285:intron |
| CTAAGACTCGGTGATGACCA+GGG | 0.641900 | 2.4:-7944395 | MS.gene31285:CDS |
| ACATGCAGGAAAATAGTGAG+TGG | 0.642610 | 2.4:-7945553 | MS.gene31285:intron |
| TAGTTTGAGAGATCCAGCCC+AGG | 0.645073 | 2.4:-7949345 | MS.gene31285:CDS |
| TTGTCTTTGTTGCAGGAACG+TGG | 0.646171 | 2.4:-7944663 | MS.gene31285:intron |
| TGGTTGAGAATGTTAACCGT+TGG | 0.646731 | 2.4:-7945493 | MS.gene31285:CDS |
| GACTCGGTGATGACCAGGGG+AGG | 0.648705 | 2.4:-7944391 | MS.gene31285:intron |
| CAACGATGCGAATTACTGGA+GGG | 0.651888 | 2.4:-7942514 | MS.gene31285:CDS |
| TGGAATCACATCCATTATGG+AGG | 0.652991 | 2.4:-7948550 | MS.gene31285:intron |
| ACACTGAAAGTGAGTTCACA+AGG | 0.657279 | 2.4:+7947669 | None:intergenic |
| TAGGGACGATATGACTACTT+GGG | 0.660146 | 2.4:+7944415 | None:intergenic |
| TAAGACTCGGTGATGACCAG+GGG | 0.660396 | 2.4:-7944394 | MS.gene31285:CDS |
| AGACTCATCATGATCCACAA+AGG | 0.661642 | 2.4:+7942863 | None:intergenic |
| CCTGAAGACATGTCAGTACG+TGG | 0.671686 | 2.4:+7946119 | None:intergenic |
| TTGAACGGTGCTGCTAATGG+TGG | 0.675103 | 2.4:-7943185 | MS.gene31285:CDS |
| CCATAAAATTGGGATACACG+TGG | 0.678987 | 2.4:+7948402 | None:intergenic |
| TCTGAAAGAGGGAATAGTCG+GGG | 0.679218 | 2.4:-7942622 | MS.gene31285:CDS |
| TGGTAACAACAGTGACGATG+AGG | 0.679471 | 2.4:-7943165 | MS.gene31285:CDS |
| TGATGACGACATTCATGACA+GGG | 0.680526 | 2.4:-7944918 | MS.gene31285:CDS |
| GGTGGAGGCTATATTAGACA+AGG | 0.680550 | 2.4:-7950199 | MS.gene31285:CDS |
| TTTAATCTATGCTTCCCAAG+CGG | 0.696313 | 2.4:+7947268 | None:intergenic |
| TAGTAAAGATTTGATTGACG+GGG | 0.702421 | 2.4:-7942751 | MS.gene31285:CDS |
| TTGCAGAAGATGATCAACAA+CGG | 0.704666 | 2.4:+7946537 | None:intergenic |
| AGAATGGGTGATGCAAACGG+AGG | 0.736988 | 2.4:-7943242 | MS.gene31285:CDS |
| ATGGATGAGATAAACTTGAA+CGG | 0.744743 | 2.4:-7943200 | MS.gene31285:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 7942485 | 7951081 | 7942485 | ID=MS.gene31285 |
| chr2.4 | mRNA | 7942485 | 7951081 | 7942485 | ID=MS.gene31285.t1;Parent=MS.gene31285 |
| chr2.4 | exon | 7951043 | 7951081 | 7951043 | ID=MS.gene31285.t1.exon1;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7951043 | 7951081 | 7951043 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7950117 | 7950220 | 7950117 | ID=MS.gene31285.t1.exon2;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7950117 | 7950220 | 7950117 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7949278 | 7949364 | 7949278 | ID=MS.gene31285.t1.exon3;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7949278 | 7949364 | 7949278 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7949106 | 7949181 | 7949106 | ID=MS.gene31285.t1.exon4;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7949106 | 7949181 | 7949106 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7948932 | 7949006 | 7948932 | ID=MS.gene31285.t1.exon5;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7948932 | 7949006 | 7948932 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7948767 | 7948820 | 7948767 | ID=MS.gene31285.t1.exon6;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7948767 | 7948820 | 7948767 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7948551 | 7948610 | 7948551 | ID=MS.gene31285.t1.exon7;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7948551 | 7948610 | 7948551 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7948337 | 7948453 | 7948337 | ID=MS.gene31285.t1.exon8;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7948337 | 7948453 | 7948337 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7947825 | 7947919 | 7947825 | ID=MS.gene31285.t1.exon9;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7947825 | 7947919 | 7947825 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7947537 | 7947745 | 7947537 | ID=MS.gene31285.t1.exon10;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7947537 | 7947745 | 7947537 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7947267 | 7947364 | 7947267 | ID=MS.gene31285.t1.exon11;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7947267 | 7947364 | 7947267 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7946777 | 7946880 | 7946777 | ID=MS.gene31285.t1.exon12;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7946777 | 7946880 | 7946777 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7946468 | 7946633 | 7946468 | ID=MS.gene31285.t1.exon13;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7946468 | 7946633 | 7946468 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7946120 | 7946242 | 7946120 | ID=MS.gene31285.t1.exon14;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7946120 | 7946242 | 7946120 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7945485 | 7945567 | 7945485 | ID=MS.gene31285.t1.exon15;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7945485 | 7945567 | 7945485 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7944838 | 7944979 | 7944838 | ID=MS.gene31285.t1.exon16;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7944838 | 7944979 | 7944838 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7944641 | 7944670 | 7944641 | ID=MS.gene31285.t1.exon17;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7944641 | 7944670 | 7944641 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7944392 | 7944462 | 7944392 | ID=MS.gene31285.t1.exon18;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7944392 | 7944462 | 7944392 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| chr2.4 | exon | 7942485 | 7943307 | 7942485 | ID=MS.gene31285.t1.exon19;Parent=MS.gene31285.t1 |
| chr2.4 | CDS | 7942485 | 7943307 | 7942485 | ID=cds.MS.gene31285.t1;Parent=MS.gene31285.t1 |
| Gene Sequence |
| Protein sequence |
