AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31339

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31339.t1 MTR_2g093190 91.667 228 18 1 1 227 1 228 3.70e-156 432
MS.gene31339.t1 MTR_1g108510 89.474 228 23 1 1 227 1 228 1.61e-153 425
MS.gene31339.t1 MTR_3g030770 89.035 228 24 1 1 227 1 228 1.04e-151 421
MS.gene31339.t1 MTR_1g108580 87.719 228 27 1 1 227 1 228 2.17e-149 415
MS.gene31339.t1 MTR_1g105920 76.018 221 42 3 1 212 1 219 7.05e-115 328
MS.gene31339.t1 MTR_8g043650 73.593 231 50 3 1 222 1 229 9.97e-114 325
MS.gene31339.t1 MTR_1g105910 71.915 235 47 4 1 226 1 225 4.47e-113 323
MS.gene31339.t1 MTR_1g012570 73.303 221 48 3 1 212 1 219 5.07e-111 318
MS.gene31339.t1 MTR_2g030740 72.851 221 49 3 1 212 1 219 2.62e-110 316
MS.gene31339.t1 MTR_3g052920 70.588 221 54 3 1 212 1 219 1.42e-105 304
MS.gene31339.t1 MTR_0121s0080 66.809 235 59 4 1 226 1 225 3.75e-102 296
MS.gene31339.t1 MTR_1g075600 62.979 235 68 4 1 226 1 225 9.46e-97 282
MS.gene31339.t1 MTR_5g053390 63.404 235 67 4 1 226 1 225 4.52e-96 280
MS.gene31339.t1 MTR_1g077360 61.277 235 72 4 1 226 1 225 2.33e-95 278
MS.gene31339.t1 MTR_5g045560 62.553 235 69 4 1 226 1 225 1.78e-94 276
MS.gene31339.t1 MTR_1g105905 66.514 218 54 4 18 226 1 208 6.66e-94 274
MS.gene31339.t1 MTR_3g052870 67.606 213 55 4 1 212 1 200 5.64e-92 269
MS.gene31339.t1 MTR_2g085280 60.426 235 74 4 1 226 1 225 6.67e-92 270
MS.gene31339.t1 MTR_2g085250 61.233 227 77 3 1 218 1 225 1.31e-91 269
MS.gene31339.t1 MTR_5g055100 60.000 235 75 4 1 226 1 225 1.36e-90 266
MS.gene31339.t1 MTR_1g106070 73.626 182 39 2 1 173 1 182 3.33e-90 263
MS.gene31339.t1 MTR_7g062350 63.348 221 61 5 16 226 27 237 1.53e-85 254
MS.gene31339.t1 MTR_0121s0100 84.848 132 19 1 1 131 1 132 1.32e-74 222
MS.gene31339.t1 MTR_3g030780 73.016 126 33 1 1 125 1 126 1.77e-60 186
MS.gene31339.t1 MTR_3g080940 52.571 175 80 2 9 182 9 181 9.77e-59 184
MS.gene31339.t1 MTR_1g075570 58.621 174 49 3 18 182 1 160 1.47e-52 167
MS.gene31339.t1 MTR_8g086290 43.293 164 84 2 5 165 8 165 8.93e-40 135
MS.gene31339.t1 MTR_3g067910 62.136 103 38 1 21 122 2 104 5.12e-38 128
MS.gene31339.t1 MTR_2g105290 39.752 161 94 1 5 165 8 165 5.67e-36 125
MS.gene31339.t1 MTR_7g028448 42.105 152 77 3 22 173 25 165 1.96e-33 118
MS.gene31339.t1 MTR_4g036915 42.105 152 77 3 22 173 25 165 1.96e-33 118
MS.gene31339.t1 MTR_1g108500 58.036 112 25 2 8 117 94 185 3.64e-31 117
MS.gene31339.t1 MTR_4g127140 38.596 171 92 2 5 165 8 175 5.36e-27 102
MS.gene31339.t1 MTR_3g067875 78.571 56 12 0 18 73 1 56 3.61e-25 94.4
MS.gene31339.t1 MTR_1g063160 51.250 80 39 0 9 88 2 81 7.25e-24 94.4
MS.gene31339.t1 MTR_4g131030 40.517 116 53 2 9 108 2 117 5.88e-23 92.8
MS.gene31339.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 8.59e-23 91.7
MS.gene31339.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 9.69e-23 91.3
MS.gene31339.t1 MTR_1g054265 50.633 79 39 0 9 87 2 80 1.72e-22 90.5
MS.gene31339.t1 MTR_3g067915 50.000 94 46 1 33 125 3 96 2.96e-22 87.4
MS.gene31339.t1 MTR_4g094632 42.857 105 59 1 9 113 2 105 3.09e-22 89.4
MS.gene31339.t1 MTR_8g051580 56.522 69 30 0 9 77 2 70 1.79e-21 88.2
MS.gene31339.t1 MTR_8g046350 41.818 110 59 2 9 117 2 107 2.61e-21 87.0
MS.gene31339.t1 MTR_4g094638 42.453 106 59 1 9 112 2 107 6.11e-21 86.7
MS.gene31339.t1 MTR_3g067870 65.079 63 22 0 16 78 83 145 1.38e-20 85.1
MS.gene31339.t1 MTR_8g022970 35.294 153 95 3 8 158 17 167 8.10e-20 84.0
MS.gene31339.t1 MTR_5g066180 32.121 165 88 4 9 170 2 145 1.25e-19 84.3
MS.gene31339.t1 MTR_4g093970 46.392 97 43 2 10 98 29 124 1.28e-19 84.3
MS.gene31339.t1 MTR_3g005530 48.529 68 35 0 9 76 2 69 6.78e-18 79.3
MS.gene31339.t1 MTR_8g033270 46.835 79 40 1 9 85 2 80 7.83e-18 79.7
MS.gene31339.t1 MTR_5g032520 33.333 141 82 4 10 144 3 137 9.80e-18 79.3
MS.gene31339.t1 MTR_4g102530 50.746 67 33 0 10 76 3 69 1.61e-17 78.2
MS.gene31339.t1 MTR_8g033220 28.037 214 141 5 10 215 3 211 1.97e-17 78.2
MS.gene31339.t1 MTR_8g033220 28.037 214 141 5 10 215 3 211 2.44e-17 78.2
MS.gene31339.t1 MTR_3g452380 36.000 125 79 1 3 126 11 135 2.97e-17 78.2
MS.gene31339.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 3.05e-17 78.6
MS.gene31339.t1 MTR_5g032150 27.650 217 132 5 10 204 3 216 5.60e-17 77.0
MS.gene31339.t1 MTR_1g053070 48.529 68 35 0 9 76 2 69 6.48e-17 77.4
MS.gene31339.t1 MTR_3g102570 41.584 101 57 2 9 108 2 101 6.53e-17 78.2
MS.gene31339.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.46e-17 75.9
MS.gene31339.t1 MTR_2g017865 33.577 137 89 2 9 144 17 152 8.82e-17 77.0
MS.gene31339.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.57e-16 76.6
MS.gene31339.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 2.34e-16 75.1
MS.gene31339.t1 MTR_8g087860 34.746 118 76 1 9 125 18 135 2.66e-16 75.5
MS.gene31339.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 2.69e-16 75.5
MS.gene31339.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.30e-16 74.7
MS.gene31339.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.31e-16 75.1
MS.gene31339.t1 MTR_3g109930 34.783 138 77 3 27 158 20 150 9.01e-16 72.8
MS.gene31339.t1 MTR_6g464720 46.377 69 36 1 9 76 2 70 1.27e-15 73.9
MS.gene31339.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.42e-15 68.9
MS.gene31339.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 3.70e-15 72.0
MS.gene31339.t1 MTR_6g015975 44.928 69 37 1 9 76 2 70 8.28e-15 71.6
MS.gene31339.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 9.22e-15 71.2
MS.gene31339.t1 MTR_7g016600 44.928 69 37 1 9 76 2 70 9.61e-15 71.2
MS.gene31339.t1 MTR_4g036050 28.704 216 123 8 9 208 2 202 9.63e-15 70.5
MS.gene31339.t1 MTR_8g066260 43.478 69 38 1 9 76 2 70 1.18e-14 70.9
MS.gene31339.t1 MTR_5g046790 50.000 56 28 0 9 64 2 57 1.31e-14 70.5
MS.gene31339.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 1.65e-14 70.9
MS.gene31339.t1 MTR_5g046870 44.928 69 37 1 9 76 2 70 1.74e-14 67.8
MS.gene31339.t1 MTR_4g084740 43.590 78 43 1 9 85 2 79 2.18e-14 71.2
MS.gene31339.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 3.01e-14 70.1
MS.gene31339.t1 MTR_4g036050 28.708 209 116 9 10 208 3 188 3.09e-14 68.9
MS.gene31339.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 3.18e-14 65.5
MS.gene31339.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 3.96e-14 69.7
MS.gene31339.t1 MTR_1g029670 47.458 59 31 0 9 67 2 60 5.02e-14 68.2
MS.gene31339.t1 MTR_8g097090 51.786 56 27 0 9 64 2 57 5.04e-14 69.3
MS.gene31339.t1 MTR_3g088615 33.333 102 47 2 9 89 2 103 6.09e-14 67.8
MS.gene31339.t1 MTR_3g113030 32.278 158 87 6 9 162 2 143 7.82e-14 68.6
MS.gene31339.t1 MTR_7g075850 53.571 56 26 0 9 64 2 57 1.21e-13 68.6
MS.gene31339.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.15e-13 67.4
MS.gene31339.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.25e-13 67.4
MS.gene31339.t1 MTR_4g036050 42.857 70 39 1 9 77 2 71 2.97e-13 66.2
MS.gene31339.t1 MTR_4g036050 43.478 69 38 1 10 77 3 71 3.04e-13 65.9
MS.gene31339.t1 MTR_1g041615 37.736 106 54 2 20 122 17 113 3.42e-13 64.7
MS.gene31339.t1 MTR_3g437790 30.370 135 92 2 26 158 30 164 4.58e-12 62.8
MS.gene31339.t1 MTR_4g108720 38.636 88 50 2 9 92 2 89 6.82e-12 64.3
MS.gene31339.t1 MTR_4g093030 36.842 95 44 2 9 87 2 96 2.18e-11 60.5
MS.gene31339.t1 MTR_4g051538 31.847 157 89 5 1 154 1 142 4.84e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31339.t1 AT5G60440 54.595 185 76 4 4 180 2 186 1.01e-57 185
MS.gene31339.t1 AT1G01530 47.568 185 86 5 4 182 2 181 4.45e-43 145
MS.gene31339.t1 AT2G24840 48.148 162 80 2 9 167 63 223 5.45e-43 146
MS.gene31339.t1 AT4G36590 43.275 171 88 3 4 166 2 171 1.98e-39 136
MS.gene31339.t1 AT1G65360 41.209 182 101 4 4 180 2 182 2.17e-38 133
MS.gene31339.t1 AT2G34440 37.415 147 91 1 9 155 2 147 3.49e-26 100
MS.gene31339.t1 AT3G66656 41.176 119 65 1 9 122 2 120 1.79e-23 93.2
MS.gene31339.t1 AT3G04100 29.570 186 126 3 2 182 7 192 8.66e-23 92.0
MS.gene31339.t1 AT1G72350 32.258 186 87 5 9 187 43 196 1.26e-22 92.0
MS.gene31339.t1 AT2G45660 34.356 163 88 5 10 161 3 157 5.92e-20 83.6
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 2 120 2.71e-19 83.2
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 3 121 3.90e-19 83.2
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 2 120 4.03e-19 83.2
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 12 130 4.38e-19 83.2
MS.gene31339.t1 AT4G24540 34.694 147 80 3 9 155 2 132 5.12e-19 82.4
MS.gene31339.t1 AT2G45660 34.161 161 87 5 10 159 3 155 5.51e-19 82.4
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 28 146 6.32e-19 83.2
MS.gene31339.t1 AT4G09960 39.344 122 67 3 9 126 97 215 1.22e-18 83.2
MS.gene31339.t1 AT1G29962 29.240 171 114 2 5 168 4 174 1.54e-18 80.5
MS.gene31339.t1 AT2G45650 50.000 68 34 0 9 76 2 69 2.70e-18 81.3
MS.gene31339.t1 AT1G28460 29.586 169 113 4 5 168 4 171 5.25e-18 79.0
MS.gene31339.t1 AT2G22540 50.746 67 33 0 10 76 3 69 1.06e-17 79.3
MS.gene31339.t1 AT2G22540 50.746 67 33 0 10 76 3 69 1.06e-17 79.3
MS.gene31339.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.21e-17 77.0
MS.gene31339.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.53e-17 79.3
MS.gene31339.t1 AT4G18960 38.679 106 56 1 2 107 11 107 1.55e-17 79.3
MS.gene31339.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.58e-17 79.3
MS.gene31339.t1 AT5G51870 52.239 67 32 0 10 76 3 69 2.49e-17 77.0
MS.gene31339.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.15e-17 77.8
MS.gene31339.t1 AT4G22950 50.746 67 33 0 10 76 3 69 3.55e-17 76.6
MS.gene31339.t1 AT5G51870 52.239 67 32 0 10 76 3 69 3.89e-17 77.0
MS.gene31339.t1 AT5G51870 52.239 67 32 0 10 76 3 69 4.63e-17 77.4
MS.gene31339.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.03e-17 76.6
MS.gene31339.t1 AT5G51870 52.239 67 32 0 10 76 13 79 5.55e-17 77.4
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.50e-17 73.9
MS.gene31339.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.71e-17 77.4
MS.gene31339.t1 AT5G10140 50.725 69 33 1 9 76 2 70 7.25e-17 75.5
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.19e-17 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.19e-17 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.19e-17 75.1
MS.gene31339.t1 AT3G57230 45.588 68 37 0 9 76 2 69 8.81e-17 77.0
MS.gene31339.t1 AT3G57230 45.588 68 37 0 9 76 2 69 8.81e-17 77.0
MS.gene31339.t1 AT4G37940 45.588 68 37 0 9 76 2 69 9.59e-17 76.6
MS.gene31339.t1 AT4G37940 45.588 68 37 0 9 76 2 69 1.04e-16 75.5
MS.gene31339.t1 AT4G37940 45.588 68 37 0 9 76 2 69 1.07e-16 76.3
MS.gene31339.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.08e-16 75.5
MS.gene31339.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.28e-16 75.1
MS.gene31339.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.31e-16 75.9
MS.gene31339.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.31e-16 75.9
MS.gene31339.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.47e-16 75.5
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.47e-16 74.3
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.47e-16 74.3
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.47e-16 74.3
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.47e-16 74.3
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.47e-16 74.3
MS.gene31339.t1 AT2G42830 47.297 74 38 1 3 76 12 84 2.01e-16 75.9
MS.gene31339.t1 AT2G42830 47.297 74 38 1 3 76 12 84 2.05e-16 75.9
MS.gene31339.t1 AT5G51860 50.746 67 33 0 10 76 3 69 2.20e-16 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.20e-16 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.20e-16 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.49e-16 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.49e-16 75.1
MS.gene31339.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.49e-16 75.1
MS.gene31339.t1 AT2G22540 58.182 55 23 0 10 64 3 57 3.13e-16 75.5
MS.gene31339.t1 AT5G51860 50.746 67 33 0 10 76 3 69 3.45e-16 74.7
MS.gene31339.t1 AT3G61120 40.909 88 50 1 9 94 2 89 3.74e-16 75.1
MS.gene31339.t1 AT3G58780 47.297 74 38 1 3 76 12 84 4.08e-16 75.1
MS.gene31339.t1 AT3G58780 47.297 74 38 1 3 76 18 90 4.67e-16 75.1
MS.gene31339.t1 AT3G30260 43.478 69 38 1 9 76 2 70 7.83e-16 74.3
MS.gene31339.t1 AT3G58780 47.297 74 38 1 3 76 12 84 8.30e-16 74.7
MS.gene31339.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.21e-15 73.6
MS.gene31339.t1 AT4G11880 58.182 55 23 0 10 64 3 57 1.22e-15 72.4
MS.gene31339.t1 AT4G11880 58.182 55 23 0 10 64 3 57 1.22e-15 72.4
MS.gene31339.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.58e-15 73.6
MS.gene31339.t1 AT1G69120 39.535 86 44 2 9 86 2 87 1.67e-15 73.2
MS.gene31339.t1 AT4G11880 57.143 56 24 0 10 65 3 58 2.12e-15 72.8
MS.gene31339.t1 AT4G11880 57.143 56 24 0 10 65 3 58 2.12e-15 72.8
MS.gene31339.t1 AT1G26310 44.928 69 37 1 9 76 2 70 3.28e-15 72.8
MS.gene31339.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.43e-15 71.2
MS.gene31339.t1 AT1G69120 39.535 86 44 2 9 86 2 87 3.57e-15 72.8
MS.gene31339.t1 AT1G77980 48.611 72 36 1 9 79 2 73 3.63e-15 73.6
MS.gene31339.t1 AT1G77950 45.833 72 38 1 9 79 2 73 4.06e-15 72.4
MS.gene31339.t1 AT1G77950 45.833 72 38 1 9 79 2 73 4.06e-15 72.4
MS.gene31339.t1 AT1G77950 45.833 72 38 1 9 79 2 73 4.06e-15 72.4
MS.gene31339.t1 AT1G77950 45.833 72 38 1 9 79 2 73 4.06e-15 72.4
MS.gene31339.t1 AT1G71692 46.377 69 36 1 10 77 3 71 4.55e-15 71.6
MS.gene31339.t1 AT5G60910 44.928 69 37 1 9 76 2 70 5.21e-15 72.0
MS.gene31339.t1 AT1G22130 35.593 118 73 3 9 124 2 118 5.69e-15 73.2
MS.gene31339.t1 AT3G54340 33.577 137 73 5 9 133 2 132 6.00e-15 71.6
MS.gene31339.t1 AT3G58780 51.562 64 30 1 3 66 12 74 7.25e-15 71.6
MS.gene31339.t1 AT5G20240 48.387 62 32 0 9 70 2 63 7.64e-15 69.7
MS.gene31339.t1 AT5G65060 46.377 69 36 1 9 76 2 70 9.20e-15 70.5
MS.gene31339.t1 AT3G58780 51.562 64 30 1 3 66 12 74 9.24e-15 72.0
MS.gene31339.t1 AT5G65050 46.377 69 36 1 9 76 2 70 9.70e-15 70.1
MS.gene31339.t1 AT5G20240 43.836 73 39 1 9 79 2 74 9.88e-15 70.9
MS.gene31339.t1 AT5G65050 46.377 69 36 1 9 76 2 70 9.96e-15 70.5
MS.gene31339.t1 AT5G65050 39.773 88 52 1 9 95 2 89 1.04e-14 70.1
MS.gene31339.t1 AT2G03710 53.571 56 26 0 9 64 2 57 1.22e-14 70.1
MS.gene31339.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.39e-14 69.7
MS.gene31339.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.53e-14 70.1
MS.gene31339.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.16e-14 68.6
MS.gene31339.t1 AT5G15800 51.786 56 27 0 9 64 2 57 2.35e-14 70.5
MS.gene31339.t1 AT1G28450 27.907 172 115 4 5 168 4 174 2.65e-14 68.9
MS.gene31339.t1 AT5G23260 55.000 60 27 0 5 64 14 73 2.78e-14 70.5
MS.gene31339.t1 AT5G23260 55.000 60 27 0 5 64 14 73 2.79e-14 70.5
MS.gene31339.t1 AT1G24260 51.786 56 27 0 9 64 2 57 2.93e-14 70.1
MS.gene31339.t1 AT1G24260 51.786 56 27 0 9 64 2 57 2.98e-14 70.1
MS.gene31339.t1 AT1G24260 51.786 56 27 0 9 64 2 57 2.99e-14 70.1
MS.gene31339.t1 AT3G02310 51.786 56 27 0 9 64 2 57 3.09e-14 69.3
MS.gene31339.t1 AT5G23260 57.143 56 24 0 9 64 2 57 3.41e-14 70.1
MS.gene31339.t1 AT5G23260 57.143 56 24 0 9 64 2 57 3.52e-14 69.7
MS.gene31339.t1 AT5G15800 44.928 69 37 1 9 76 2 70 4.12e-14 70.1
MS.gene31339.t1 AT5G65070 40.580 69 40 1 9 76 2 70 4.19e-14 68.9
MS.gene31339.t1 AT1G17310 33.533 167 72 4 8 170 47 178 4.83e-14 68.9
MS.gene31339.t1 AT1G17310 33.533 167 72 4 8 170 58 189 5.45e-14 68.9
MS.gene31339.t1 AT2G03710 53.571 56 26 0 9 64 2 57 5.63e-14 69.3
MS.gene31339.t1 AT2G03710 53.571 56 26 0 9 64 2 57 5.68e-14 69.3
MS.gene31339.t1 AT3G02310 51.786 56 27 0 9 64 2 57 8.62e-14 68.9
MS.gene31339.t1 AT5G65070 40.580 69 40 1 9 76 2 70 9.89e-14 68.6
MS.gene31339.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.24e-13 67.8
MS.gene31339.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.44e-13 67.8
MS.gene31339.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.44e-13 67.8
MS.gene31339.t1 AT5G65070 47.368 57 30 0 9 65 2 58 1.97e-13 67.8
MS.gene31339.t1 AT1G47760 40.299 67 40 0 9 75 2 68 4.64e-13 65.9
MS.gene31339.t1 AT5G49490 37.895 95 52 2 4 91 40 134 6.40e-13 67.0
MS.gene31339.t1 AT1G18750 40.000 75 43 1 9 81 2 76 8.85e-13 67.0
MS.gene31339.t1 AT1G18750 40.000 75 43 1 9 81 2 76 9.50e-13 67.0
MS.gene31339.t1 AT1G18750 40.000 75 43 1 9 81 2 76 9.82e-13 67.0
MS.gene31339.t1 AT5G65080 39.474 76 40 2 7 76 2 77 1.75e-12 64.3
MS.gene31339.t1 AT4G37435 48.214 56 29 0 9 64 2 57 2.54e-12 63.5
MS.gene31339.t1 AT5G65080 48.148 54 28 0 9 62 9 62 2.96e-12 63.9
MS.gene31339.t1 AT2G03060 30.769 169 93 8 9 158 2 165 6.04e-12 64.7
MS.gene31339.t1 AT2G03060 30.769 169 93 8 9 158 2 165 6.04e-12 64.7
MS.gene31339.t1 AT2G03060 30.769 169 93 8 9 158 2 165 6.04e-12 64.7
MS.gene31339.t1 AT2G03060 30.769 169 93 8 9 158 2 165 6.35e-12 64.7
MS.gene31339.t1 AT1G69540 33.028 109 66 2 9 116 2 104 2.48e-11 62.8
MS.gene31339.t1 AT1G69540 33.028 109 66 2 9 116 2 104 2.71e-11 62.8
MS.gene31339.t1 AT1G46408 43.836 73 37 2 10 78 5 77 6.82e-11 60.8

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGGATTTGGCTGATTA+TGG 0.267648 2.4:+8632025 None:intergenic
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 2.4:-8631955 MS.gene31339:CDS
TGAATTGCATGGTGTCGTTT+TGG 0.309643 2.4:+8632331 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 2.4:-8631920 MS.gene31339:CDS
TGGTGGGCTTGTCCAGTTGA+TGG 0.339908 2.4:-8632177 MS.gene31339:CDS
ATTTGAGTTTGTTGAGGATT+TGG 0.343942 2.4:+8632015 None:intergenic
TGAATTATTCAAGAAGGCTT+TGG 0.355319 2.4:-8632136 MS.gene31339:CDS
CTCATCACCAATCTTCTTCT+CGG 0.374331 2.4:+8632236 None:intergenic
GTTTATGACCGTATCAAGAT+TGG 0.394972 2.4:+8632377 None:intergenic
GCTTTGAGAAAGTCACTTGC+AGG 0.402119 2.4:+8632508 None:intergenic
GTCCAGTTGATGGGATGAAT+AGG 0.429804 2.4:-8632167 MS.gene31339:CDS
TCCCTATTCATCCCATCAAC+TGG 0.439721 2.4:+8632165 None:intergenic
TCCAGTTGATGGGATGAATA+GGG 0.440779 2.4:-8632166 MS.gene31339:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 2.4:-8632459 MS.gene31339:CDS
ATGAAACGGAGGCTAAGTTT+TGG 0.455077 2.4:-8632197 MS.gene31339:CDS
GGTGGGCTTGTCCAGTTGAT+GGG 0.465063 2.4:-8632176 MS.gene31339:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.471167 2.4:-8632243 MS.gene31339:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486430 2.4:+8631967 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 2.4:+8632446 None:intergenic
TTTATGACCGTATCAAGATT+GGG 0.500413 2.4:+8632378 None:intergenic
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 2.4:-8632133 MS.gene31339:CDS
TCAGCTTGAATTATTCAAGA+AGG 0.521408 2.4:-8632142 MS.gene31339:CDS
GTGGGACGAGAGAAAGATAG+TGG 0.522741 2.4:+8632355 None:intergenic
CTTTCTCAAAGCGTCGTAGC+GGG 0.523572 2.4:-8632497 MS.gene31339:CDS
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 2.4:+8632461 None:intergenic
GCATTTCTTTGCGCTCGACA+TGG 0.526063 2.4:+8632578 None:intergenic
TGGTCATCCCAATCTTGATA+CGG 0.546833 2.4:-8632385 MS.gene31339:CDS
GAGCAATTTGAGCAATGAAA+CGG 0.548852 2.4:-8632211 MS.gene31339:CDS
ACACCATATTATTGAAGCCA+TGG 0.549763 2.4:+8631917 None:intergenic
GAGGCTGCAATTGCAACATA+GGG 0.578323 2.4:+8631968 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.580084 2.4:-8632423 MS.gene31339:CDS
ATCGATCCATCAAACAAATG+AGG 0.583681 2.4:+8631949 None:intergenic
GGAAACATTTGAGTTTGTTG+AGG 0.589185 2.4:+8632009 None:intergenic
ATCAAGATTGGGATGACCAA+AGG 0.590577 2.4:+8632389 None:intergenic
TTGAGAAAGTCACTTGCAGG+TGG 0.593625 2.4:+8632511 None:intergenic
ATTATGGAGATAAATGTTCG+AGG 0.608576 2.4:+8632041 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 2.4:-8632418 MS.gene31339:CDS
AACTCAAATCAACAACACGC+TGG 0.622750 2.4:-8632262 MS.gene31339:CDS
GTTCACGCACGTTGGCATTG+CGG 0.623421 2.4:+8632298 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.624124 2.4:+8632408 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 2.4:+8632445 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 2.4:+8631922 None:intergenic
CGACACCATGCAATTCATTG+AGG 0.645467 2.4:-8632325 MS.gene31339:CDS
ACTTTCTCAAAGCGTCGTAG+CGG 0.659133 2.4:-8632498 MS.gene31339:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.661389 2.4:+8632320 None:intergenic
AGCATTGAGTTCACGCACGT+TGG 0.672189 2.4:+8632290 None:intergenic
TCGAGCGCAAAGAAATGCCG+AGG 0.677444 2.4:-8632573 MS.gene31339:CDS
CAATTTGAGCAATGAAACGG+AGG 0.680444 2.4:-8632208 MS.gene31339:CDS
GGATCGATGATGCCTCACCA+TGG 0.718921 2.4:-8631934 MS.gene31339:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGGGTTTTGAAAAATTTG+TGG + chr2.4:8632509-8632528 None:intergenic 25.0%
AACAAAAAATGGAAGAGTTC+GGG + chr2.4:8632417-8632436 None:intergenic 30.0%
ATTATGGAGATAAATGTTCG+AGG + chr2.4:8632453-8632472 None:intergenic 30.0%
CAACAAAAAATGGAAGAGTT+CGG + chr2.4:8632418-8632437 None:intergenic 30.0%
TCAGCTTGAATTATTCAAGA+AGG - chr2.4:8632349-8632368 MS.gene31339:CDS 30.0%
TGAATTATTCAAGAAGGCTT+TGG - chr2.4:8632355-8632374 MS.gene31339:CDS 30.0%
TTTATGACCGTATCAAGATT+GGG + chr2.4:8632116-8632135 None:intergenic 30.0%
!! ATTTGAGTTTGTTGAGGATT+TGG + chr2.4:8632479-8632498 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr2.4:8631947-8631966 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr2.4:8632086-8632105 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG + chr2.4:8632577-8632596 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG + chr2.4:8632572-8632591 None:intergenic 35.0%
ATCGATCCATCAAACAAATG+AGG + chr2.4:8632545-8632564 None:intergenic 35.0%
GAGCAATTTGAGCAATGAAA+CGG - chr2.4:8632280-8632299 MS.gene31339:CDS 35.0%
GTTTATGACCGTATCAAGAT+TGG + chr2.4:8632117-8632136 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG - chr2.4:8632571-8632590 MS.gene31339:CDS 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG - chr2.4:8632358-8632377 MS.gene31339:CDS 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG + chr2.4:8632428-8632447 None:intergenic 35.0%
!! GGAAACATTTGAGTTTGTTG+AGG + chr2.4:8632485-8632504 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr2.4:8632086-8632105 MS.gene31339:CDS 35.0%
!!! CGAACTCTTCCATTTTTTGT+TGG - chr2.4:8632416-8632435 MS.gene31339:CDS 35.0%
!!! GGGTTTTGAAAAATTTGTGG+TGG + chr2.4:8632506-8632525 None:intergenic 35.0%
AACTCAAATCAACAACACGC+TGG - chr2.4:8632229-8632248 MS.gene31339:CDS 40.0%
ATCAAGATTGGGATGACCAA+AGG + chr2.4:8632105-8632124 None:intergenic 40.0%
CAATTTGAGCAATGAAACGG+AGG - chr2.4:8632283-8632302 MS.gene31339:CDS 40.0%
CTCATCACCAATCTTCTTCT+CGG + chr2.4:8632258-8632277 None:intergenic 40.0%
GTTGAGGATTTGGCTGATTA+TGG + chr2.4:8632469-8632488 None:intergenic 40.0%
TGGTCATCCCAATCTTGATA+CGG - chr2.4:8632106-8632125 MS.gene31339:CDS 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr2.4:8632073-8632092 MS.gene31339:CDS 40.0%
TTGCAGCCTCATTTGTTTGA+TGG - chr2.4:8632536-8632555 MS.gene31339:CDS 40.0%
! ATGAAACGGAGGCTAAGTTT+TGG - chr2.4:8632294-8632313 MS.gene31339:CDS 40.0%
!! TCCAGTTGATGGGATGAATA+GGG - chr2.4:8632325-8632344 MS.gene31339:CDS 40.0%
!!! AATTGCATGGTGTCGTTTTG+GGG + chr2.4:8632161-8632180 None:intergenic 40.0%
!!! GAATTGCATGGTGTCGTTTT+GGG + chr2.4:8632162-8632181 None:intergenic 40.0%
!!! TGAATTGCATGGTGTCGTTT+TGG + chr2.4:8632163-8632182 None:intergenic 40.0%
CGACACCATGCAATTCATTG+AGG - chr2.4:8632166-8632185 MS.gene31339:CDS 45.0%
CTCGTTGTATTCTCACCTAG+TGG - chr2.4:8632068-8632087 MS.gene31339:CDS 45.0%
GAGGCTGCAATTGCAACATA+GGG + chr2.4:8632526-8632545 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr2.4:8632174-8632193 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+TGG + chr2.4:8632329-8632348 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG + chr2.4:8632527-8632546 None:intergenic 45.0%
TTGAGAAAGTCACTTGCAGG+TGG + chr2.4:8631983-8632002 None:intergenic 45.0%
!! AAACGGAGGCTAAGTTTTGG+TGG - chr2.4:8632297-8632316 MS.gene31339:CDS 45.0%
!! AACGGAGGCTAAGTTTTGGT+GGG - chr2.4:8632298-8632317 MS.gene31339:CDS 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG - chr2.4:8631993-8632012 MS.gene31339:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr2.4:8631986-8632005 None:intergenic 45.0%
!! GTCCAGTTGATGGGATGAAT+AGG - chr2.4:8632324-8632343 MS.gene31339:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr2.4:8632048-8632067 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr2.4:8632032-8632051 MS.gene31339:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG - chr2.4:8632248-8632267 MS.gene31339:CDS 50.0%
GTGGGACGAGAGAAAGATAG+TGG + chr2.4:8632139-8632158 None:intergenic 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG + chr2.4:8632033-8632052 None:intergenic 50.0%
! AGCATTGAGTTCACGCACGT+TGG + chr2.4:8632204-8632223 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr2.4:8631938-8631957 None:intergenic 50.0%
!! CTTTCTCAAAGCGTCGTAGC+GGG - chr2.4:8631994-8632013 MS.gene31339:CDS 50.0%
GAGCAGCATCTGCACCACAA+AGG + chr2.4:8632049-8632068 None:intergenic 55.0%
GGATCGATGATGCCTCACCA+TGG - chr2.4:8632557-8632576 MS.gene31339:CDS 55.0%
GTTCACGCACGTTGGCATTG+CGG + chr2.4:8632196-8632215 None:intergenic 55.0%
TCGAGCGCAAAGAAATGCCG+AGG - chr2.4:8631918-8631937 MS.gene31339:CDS 55.0%
! GGTGGGCTTGTCCAGTTGAT+GGG - chr2.4:8632315-8632334 MS.gene31339:CDS 55.0%
!! TGGTGGGCTTGTCCAGTTGA+TGG - chr2.4:8632314-8632333 MS.gene31339:CDS 55.0%
!!! GCATGGTGTCGTTTTGGGGT+GGG + chr2.4:8632157-8632176 None:intergenic 55.0%
!!! TGCATGGTGTCGTTTTGGGG+TGG + chr2.4:8632158-8632177 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 8631915 8632598 8631915 ID=MS.gene31339
chr2.4 mRNA 8631915 8632598 8631915 ID=MS.gene31339.t1;Parent=MS.gene31339
chr2.4 exon 8631915 8632598 8631915 ID=MS.gene31339.t1.exon1;Parent=MS.gene31339.t1
chr2.4 CDS 8631915 8632598 8631915 ID=cds.MS.gene31339.t1;Parent=MS.gene31339.t1
Gene Sequence

>MS.gene31339

ATGTCGAGCGCAAAGAAATGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCCACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCATCCCAATCTTGATACGGTCATAAACCACTATCTTTCTCTCGTCCCACCCCAAAACGACACCATGCAATTCATTGAGGCTCACCGCAATGCCAACGTGCGTGAACTCAATGCTCAACTAACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGTGATGAGCTGAGCAATTTGAGCAATGAAACGGAGGCTAAGTTTTGGTGGGCTTGTCCAGTTGATGGGATGAATAGGGATCAGCTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCTACCCGAACTCTTCCATTTTTTGTTGGCAATGCTTCATCCTCGAACATTTATCTCCATAATCAGCCAAATCCTCAACAAACTCAAATGTTTCCACCACAAATTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCGATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene31339.t1

MSSAKKCRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVINHYLSLVPPQNDTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLSNETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATRTLPFFVGNASSSNIYLHNQPNPQQTQMFPPQIFQNPMLQLQPHLFDGSMMPHHGFNNMV