AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31444

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31444.t1 MTR_2g090605 97.115 416 5 3 1 410 1 415 0.0 828
MS.gene31444.t1 MTR_4g078660 65.464 194 35 5 31 222 29 192 1.49e-80 251
MS.gene31444.t1 MTR_6g090380 67.883 137 32 2 56 180 70 206 4.12e-66 215
MS.gene31444.t1 MTR_8g102100 37.989 358 170 10 63 409 59 375 7.11e-64 209
MS.gene31444.t1 MTR_7g092070 68.966 116 36 0 73 188 260 375 2.72e-57 200
MS.gene31444.t1 MTR_3g029590 45.852 229 96 6 73 290 260 471 4.01e-56 197
MS.gene31444.t1 MTR_3g103960 55.769 156 64 3 30 180 2 157 1.51e-54 182
MS.gene31444.t1 MTR_1g050438 64.348 115 41 0 73 187 224 338 1.01e-51 182
MS.gene31444.t1 MTR_0728s0020 64.348 115 41 0 73 187 240 354 2.12e-51 182
MS.gene31444.t1 MTR_5g071070 61.207 116 45 0 73 188 144 259 3.74e-51 181
MS.gene31444.t1 MTR_5g082830 65.217 115 38 1 73 187 213 325 1.05e-50 181
MS.gene31444.t1 MTR_5g071070 61.207 116 45 0 73 188 226 341 1.30e-50 181
MS.gene31444.t1 MTR_1g075890 61.207 116 45 0 73 188 225 340 3.79e-49 176
MS.gene31444.t1 MTR_3g435680 51.613 155 70 1 34 188 113 262 4.78e-49 171
MS.gene31444.t1 MTR_3g070880 56.034 116 51 0 73 188 159 274 7.50e-45 162
MS.gene31444.t1 MTR_3g435590 59.813 107 43 0 73 179 234 340 1.38e-43 158
MS.gene31444.t1 MTR_3g464270 50.877 114 55 1 76 188 8 121 1.13e-36 137
MS.gene31444.t1 MTR_3g464260 62.162 74 28 0 108 181 212 285 2.37e-29 120
MS.gene31444.t1 MTR_3g464290 55.814 86 37 1 73 157 96 181 3.47e-29 119
MS.gene31444.t1 MTR_3g464280 40.179 112 33 1 70 181 181 258 3.61e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31444.t1 AT1G03790 46.133 362 137 12 66 409 71 392 5.11e-85 265
MS.gene31444.t1 AT5G44260 42.929 396 179 12 30 409 16 380 1.83e-77 245
MS.gene31444.t1 AT2G19810 67.347 147 38 1 56 192 47 193 9.03e-71 227
MS.gene31444.t1 AT4G29190 33.824 408 191 11 24 410 7 356 9.65e-69 221
MS.gene31444.t1 AT2G25900 74.561 114 29 0 71 184 84 197 2.94e-65 211
MS.gene31444.t1 AT2G25900 74.561 114 29 0 71 184 84 197 2.94e-65 211
MS.gene31444.t1 AT2G41900 45.536 224 94 4 73 289 257 459 1.63e-56 197
MS.gene31444.t1 AT5G58620 66.957 115 37 1 73 186 205 319 2.65e-54 190
MS.gene31444.t1 AT5G07500 68.182 110 35 0 70 179 45 154 1.75e-52 176
MS.gene31444.t1 AT5G12850 65.217 115 39 1 73 186 253 367 4.96e-52 185
MS.gene31444.t1 AT3G55980 39.130 253 102 5 28 269 156 367 2.46e-49 176
MS.gene31444.t1 AT2G40140 40.171 234 92 5 73 292 210 409 5.67e-49 175
MS.gene31444.t1 AT2G40140 40.171 234 92 5 73 292 210 409 5.67e-49 175
MS.gene31444.t1 AT3G55980 39.130 253 102 5 28 269 223 434 5.76e-49 176

Find 82 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGGGTGAGGAGCTTTCT+TGG 0.183749 2.4:-10046714 None:intergenic
AGACATGCTTATTGATCTTT+TGG 0.193333 2.4:+10047448 MS.gene31444:CDS
CATTGTGTGGGAGGAACTTT+TGG 0.221739 2.4:-10046782 None:intergenic
GTTGGTGGTGGTGACGTTAA+TGG 0.315506 2.4:+10047773 MS.gene31444:CDS
GAGGGATGTCGATGTCTCTA+AGG 0.318194 2.4:-10046692 None:intergenic
TTTGAAGATGATGATGTAAC+AGG 0.341921 2.4:-10047158 None:intergenic
AAACAACGACAATATTAATA+AGG 0.349115 2.4:+10047748 MS.gene31444:CDS
TCATTCACCCATCCGAGATC+AGG 0.400183 2.4:-10047812 None:intergenic
TGGTGGTGTTGCGGCGGGTG+AGG 0.405564 2.4:-10046725 None:intergenic
GACAATATTAATAAGGTTGT+TGG 0.420030 2.4:+10047755 MS.gene31444:CDS
TTTGGGAGAGAGAGGTTGGT+AGG 0.420760 2.4:-10046664 None:intergenic
CTCGTAGCCGGAGCCATGAC+TGG 0.421786 2.4:+10046880 MS.gene31444:CDS
CGCCGCGGTGGCTGTAACCG+TGG 0.429136 2.4:+10046993 MS.gene31444:CDS
CAGCCACCGCGGCGATACTC+AGG 0.436266 2.4:-10046984 None:intergenic
TCTTGTCCTGCCCCTGATCT+CGG 0.437151 2.4:+10047800 MS.gene31444:CDS
AGTGCTTTAGCAGCAGAAAC+TGG 0.447660 2.4:-10047521 None:intergenic
GGCGGTGGTGGTGTTGCGGC+GGG 0.449617 2.4:-10046730 None:intergenic
AAGAATGAAACTTGTGTTGT+TGG 0.454570 2.4:-10046641 None:intergenic
GAAGATGTCGACGGCGGTGG+TGG 0.457230 2.4:-10046742 None:intergenic
TGTTGCTGATTCTGTTCCTC+AGG 0.458860 2.4:-10047584 None:intergenic
GGACTTTGAATTCATACATT+CGG 0.463131 2.4:-10046848 None:intergenic
CGGCGGTGGTGGTGTTGCGG+CGG 0.472614 2.4:-10046731 None:intergenic
GTCCTGCCCCTGATCTCGGA+TGG 0.476419 2.4:+10047804 MS.gene31444:CDS
GGAGAAGATGTCGACGGCGG+TGG 0.478731 2.4:-10046745 None:intergenic
CGGGTGAGGAGCTTTCTTGG+AGG 0.487835 2.4:-10046711 None:intergenic
CGGAAATGATCTGATGAGTA+AGG 0.490767 2.4:-10046828 None:intergenic
GGGTGAGGAGCTTTCTTGGA+GGG 0.496924 2.4:-10046710 None:intergenic
TCCTGCCCCTGATCTCGGAT+GGG 0.499250 2.4:+10047805 MS.gene31444:CDS
ATTAATAAGGTTGTTGGTGG+TGG 0.500154 2.4:+10047761 MS.gene31444:CDS
AGAACTGAAGCATGCAAAGA+TGG 0.503562 2.4:+10047074 MS.gene31444:CDS
TCCGCCGGTGCACTCGTAGC+CGG 0.504444 2.4:+10046868 MS.gene31444:CDS
ACACCGTTACGTGGCTTCAT+CGG 0.504782 2.4:-10047371 None:intergenic
GAACCATAGCGTGAGAGCGA+TGG 0.517489 2.4:-10047395 None:intergenic
TTGTCAACATCATTGAAACT+TGG 0.521327 2.4:-10047689 None:intergenic
CGTGGCTTCATCGGAGACAT+AGG 0.522416 2.4:-10047362 None:intergenic
CCACGGCGGTTTCATTACTC+AGG 0.527158 2.4:+10046951 MS.gene31444:CDS
CATTCACCCATCCGAGATCA+GGG 0.528306 2.4:-10047811 None:intergenic
GTTCCATCGCTCTCACGCTA+TGG 0.533114 2.4:+10047392 MS.gene31444:CDS
CACTGTGGCGGTAATGGTAA+TGG 0.535187 2.4:+10047266 MS.gene31444:CDS
ATCTGATGAGTAAGGATCAT+CGG 0.544740 2.4:-10046820 None:intergenic
AATATTAATAAGGTTGTTGG+TGG 0.545047 2.4:+10047758 MS.gene31444:CDS
GCTTCAGTTCTGTATCTAGC+AGG 0.547143 2.4:-10047062 None:intergenic
GAAGGGATGAATTTCAATGA+CGG 0.555565 2.4:+10047479 MS.gene31444:CDS
GGCGGTAATGGTAATGGTAA+TGG 0.562964 2.4:+10047272 MS.gene31444:CDS
AATGAAACCGCCGTGGATCA+CGG 0.566037 2.4:-10046944 None:intergenic
CGACGGCGGTGGTGGTGTTG+CGG 0.567795 2.4:-10046734 None:intergenic
AAGCTCGCCGCCGTGATCCA+CGG 0.567851 2.4:+10046934 MS.gene31444:CDS
AGTCAGTCCAGTCATGGCTC+CGG 0.569804 2.4:-10046887 None:intergenic
TGATGATCAAAAGAAGAAGA+AGG 0.576971 2.4:-10047620 None:intergenic
GGAGACATAGGTGGTGATGC+CGG 0.581592 2.4:-10047350 None:intergenic
GATACTTGTGAATTTGCTCA+TGG 0.582670 2.4:+10047017 MS.gene31444:CDS
ATGGACAGTCAGTCCAGTCA+TGG 0.586583 2.4:-10046893 None:intergenic
TGAATCTCTTGATGTTCCTG+AGG 0.587490 2.4:+10047568 MS.gene31444:CDS
AGCCACCGCGGCGATACTCA+GGG 0.587575 2.4:-10046983 None:intergenic
ACCCATCCGAGATCAGGGGC+AGG 0.589319 2.4:-10047806 None:intergenic
GACTGTCCATTCGCTCACCC+CGG 0.597229 2.4:+10046906 MS.gene31444:CDS
AGCACTTCAGATACAAAACA+TGG 0.598969 2.4:+10047538 MS.gene31444:CDS
TCTCCGATGAAGCCACGTAA+CGG 0.601715 2.4:+10047368 MS.gene31444:CDS
AGGGATGTCGATGTCTCTAA+GGG 0.602570 2.4:-10046691 None:intergenic
TCCGGCTACGAGTGCACCGG+CGG 0.607263 2.4:-10046869 None:intergenic
AAGATGATGATGTAACAGGA+AGG 0.616658 2.4:-10047154 None:intergenic
AGTCAGAGTCATTGTGTGGG+AGG 0.622332 2.4:-10046791 None:intergenic
TCTGAGTCAGAGTCATTGTG+TGG 0.623962 2.4:-10046795 None:intergenic
GGCTCCGGCTACGAGTGCAC+CGG 0.627207 2.4:-10046872 None:intergenic
TGCCCTGAGTATCGCCGCGG+TGG 0.630381 2.4:+10046981 MS.gene31444:CDS
CACGGCGGTTTCATTACTCA+GGG 0.632004 2.4:+10046952 MS.gene31444:CDS
CTGAGTCAGAGTCATTGTGT+GGG 0.635621 2.4:-10046794 None:intergenic
CAAATTCACAAGTATCGCCA+CGG 0.650826 2.4:-10047010 None:intergenic
AGCGATGGAACACCGTTACG+TGG 0.658393 2.4:-10047380 None:intergenic
GACATAGGTGGTGATGCCGG+AGG 0.666150 2.4:-10047347 None:intergenic
GTCGTCGGAGAAGATGTCGA+CGG 0.666964 2.4:-10046751 None:intergenic
GGAAGGATTCTTAATTGACG+AGG 0.669701 2.4:-10047137 None:intergenic
TGTATGAATTCAAAGTCCGC+CGG 0.674896 2.4:+10046853 MS.gene31444:CDS
ATTCACCCATCCGAGATCAG+GGG 0.681023 2.4:-10047810 None:intergenic
GGCTTCATCGGAGACATAGG+TGG 0.681714 2.4:-10047359 None:intergenic
CCTGAGTAATGAAACCGCCG+TGG 0.683137 2.4:-10046951 None:intergenic
GTCGGAGAAGATGTCGACGG+CGG 0.688190 2.4:-10046748 None:intergenic
CTCGCCGCCGTGATCCACGG+CGG 0.698305 2.4:+10046937 MS.gene31444:CDS
GCACTTCAGATACAAAACAT+GGG 0.708790 2.4:+10047539 MS.gene31444:CDS
CGCCACGGTTACAGCCACCG+CGG 0.740750 2.4:-10046995 None:intergenic
GAAACCGCCGTGGATCACGG+CGG 0.763141 2.4:-10046941 None:intergenic
GTTTGCCCTGAGTATCGCCG+CGG 0.768550 2.4:+10046978 MS.gene31444:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAACGACAATATTAATA+AGG + chr2.4:10047748-10047767 MS.gene31444:CDS 20.0%
!!! AACAATATGAACATGTTTTT+GGG + chr2.4:10047725-10047744 MS.gene31444:CDS 20.0%
! AATATTAATAAGGTTGTTGG+TGG + chr2.4:10047758-10047777 MS.gene31444:CDS 25.0%
! GACAATATTAATAAGGTTGT+TGG + chr2.4:10047755-10047774 MS.gene31444:CDS 25.0%
!! CAACAATATGAACATGTTTT+TGG + chr2.4:10047724-10047743 MS.gene31444:CDS 25.0%
AAGAATGAAACTTGTGTTGT+TGG - chr2.4:10046644-10046663 None:intergenic 30.0%
GGACTTTGAATTCATACATT+CGG - chr2.4:10046851-10046870 None:intergenic 30.0%
TGATGATCAAAAGAAGAAGA+AGG - chr2.4:10047623-10047642 None:intergenic 30.0%
TTGTCAACATCATTGAAACT+TGG - chr2.4:10047692-10047711 None:intergenic 30.0%
! AGACATGCTTATTGATCTTT+TGG + chr2.4:10047448-10047467 MS.gene31444:CDS 30.0%
! GACATGCTTATTGATCTTTT+GGG + chr2.4:10047449-10047468 MS.gene31444:CDS 30.0%
! TTTGAAGATGATGATGTAAC+AGG - chr2.4:10047161-10047180 None:intergenic 30.0%
!! ATACCAAAAAGTGTTGAAGT+TGG - chr2.4:10047311-10047330 None:intergenic 30.0%
!!! ATCTTTTGGGTTCTTTTGAA+GGG + chr2.4:10047462-10047481 MS.gene31444:CDS 30.0%
!!! ATGTCTCTAAGGGATTTTTT+GGG - chr2.4:10046684-10046703 None:intergenic 30.0%
!!! TGTTTGATTTTGAAGCAACA+TGG - chr2.4:10047229-10047248 None:intergenic 30.0%
AGCACTTCAGATACAAAACA+TGG + chr2.4:10047538-10047557 MS.gene31444:CDS 35.0%
ATCTGATGAGTAAGGATCAT+CGG - chr2.4:10046823-10046842 None:intergenic 35.0%
GAAGGGATGAATTTCAATGA+CGG + chr2.4:10047479-10047498 MS.gene31444:CDS 35.0%
GCACTTCAGATACAAAACAT+GGG + chr2.4:10047539-10047558 MS.gene31444:CDS 35.0%
! AAGATGATGATGTAACAGGA+AGG - chr2.4:10047157-10047176 None:intergenic 35.0%
! ATTAATAAGGTTGTTGGTGG+TGG + chr2.4:10047761-10047780 MS.gene31444:CDS 35.0%
! GATACTTGTGAATTTGCTCA+TGG + chr2.4:10047017-10047036 MS.gene31444:CDS 35.0%
! TCTCCAACTTCAACACTTTT+TGG + chr2.4:10047305-10047324 MS.gene31444:CDS 35.0%
!!! GATCTTTTGGGTTCTTTTGA+AGG + chr2.4:10047461-10047480 MS.gene31444:CDS 35.0%
!!! GATGTCTCTAAGGGATTTTT+TGG - chr2.4:10046685-10046704 None:intergenic 35.0%
!!! TGTTGTTTGTTTTGTCACTG+TGG + chr2.4:10047251-10047270 MS.gene31444:CDS 35.0%
AGAACTGAAGCATGCAAAGA+TGG + chr2.4:10047074-10047093 MS.gene31444:CDS 40.0%
CGGAAATGATCTGATGAGTA+AGG - chr2.4:10046831-10046850 None:intergenic 40.0%
GGAAGGATTCTTAATTGACG+AGG - chr2.4:10047140-10047159 None:intergenic 40.0%
TGAATCTCTTGATGTTCCTG+AGG + chr2.4:10047568-10047587 MS.gene31444:CDS 40.0%
TGTATGAATTCAAAGTCCGC+CGG + chr2.4:10046853-10046872 MS.gene31444:CDS 40.0%
! CAAATTCACAAGTATCGCCA+CGG - chr2.4:10047013-10047032 None:intergenic 40.0%
!! CTCATGGTGTTTTTGAATGC+TGG + chr2.4:10047033-10047052 MS.gene31444:CDS 40.0%
!!! ATTTTTTGGGAGAGAGAGGT+TGG - chr2.4:10046671-10046690 None:intergenic 40.0%
!!! TGTTTGTTTTGTCACTGTGG+CGG + chr2.4:10047254-10047273 MS.gene31444:CDS 40.0%
AGGGATGTCGATGTCTCTAA+GGG - chr2.4:10046694-10046713 None:intergenic 45.0%
AGTGCTTTAGCAGCAGAAAC+TGG - chr2.4:10047524-10047543 None:intergenic 45.0%
CTGAGTCAGAGTCATTGTGT+GGG - chr2.4:10046797-10046816 None:intergenic 45.0%
GCTTCAGTTCTGTATCTAGC+AGG - chr2.4:10047065-10047084 None:intergenic 45.0%
TCTGAGTCAGAGTCATTGTG+TGG - chr2.4:10046798-10046817 None:intergenic 45.0%
! CATTGTGTGGGAGGAACTTT+TGG - chr2.4:10046785-10046804 None:intergenic 45.0%
! TTTTGTCACTGTGGCGGTAA+TGG + chr2.4:10047260-10047279 MS.gene31444:CDS 45.0%
!! GGCGGTAATGGTAATGGTAA+TGG + chr2.4:10047272-10047291 MS.gene31444:CDS 45.0%
!! GTCTCATTTTTCTTCGCCTC+CGG + chr2.4:10047331-10047350 MS.gene31444:CDS 45.0%
!! TGTTGCTGATTCTGTTCCTC+AGG - chr2.4:10047587-10047606 None:intergenic 45.0%
!!! AGGGATTTTTTGGGAGAGAG+AGG - chr2.4:10046675-10046694 None:intergenic 45.0%
AATGAAACCGCCGTGGATCA+CGG - chr2.4:10046947-10046966 None:intergenic 50.0%
ACACCGTTACGTGGCTTCAT+CGG - chr2.4:10047374-10047393 None:intergenic 50.0%
AGTCAGAGTCATTGTGTGGG+AGG - chr2.4:10046794-10046813 None:intergenic 50.0%
ATGGACAGTCAGTCCAGTCA+TGG - chr2.4:10046896-10046915 None:intergenic 50.0%
ATTCACCCATCCGAGATCAG+GGG - chr2.4:10047813-10047832 None:intergenic 50.0%
CACGGCGGTTTCATTACTCA+GGG + chr2.4:10046952-10046971 MS.gene31444:CDS 50.0%
CATTCACCCATCCGAGATCA+GGG - chr2.4:10047814-10047833 None:intergenic 50.0%
GAGGGATGTCGATGTCTCTA+AGG - chr2.4:10046695-10046714 None:intergenic 50.0%
TCATTCACCCATCCGAGATC+AGG - chr2.4:10047815-10047834 None:intergenic 50.0%
TCTCCGATGAAGCCACGTAA+CGG + chr2.4:10047368-10047387 MS.gene31444:CDS 50.0%
! CACTGTGGCGGTAATGGTAA+TGG + chr2.4:10047266-10047285 MS.gene31444:CDS 50.0%
! TGTGTGGGAGGAACTTTTGG+AGG - chr2.4:10046782-10046801 None:intergenic 50.0%
! TTTGGGAGAGAGAGGTTGGT+AGG - chr2.4:10046667-10046686 None:intergenic 50.0%
!! GTTGGTGGTGGTGACGTTAA+TGG + chr2.4:10047773-10047792 MS.gene31444:CDS 50.0%
!! TGGGAGGAACTTTTGGAGGA+TGG - chr2.4:10046778-10046797 None:intergenic 50.0%
!!! CTTTTGGAGGATGGTGTCGT+CGG - chr2.4:10046769-10046788 None:intergenic 50.0%
AGCGATGGAACACCGTTACG+TGG - chr2.4:10047383-10047402 None:intergenic 55.0%
AGTCAGTCCAGTCATGGCTC+CGG - chr2.4:10046890-10046909 None:intergenic 55.0%
CCACGGCGGTTTCATTACTC+AGG + chr2.4:10046951-10046970 MS.gene31444:CDS 55.0%
CCTGAGTAATGAAACCGCCG+TGG - chr2.4:10046954-10046973 None:intergenic 55.0%
CGTGGCTTCATCGGAGACAT+AGG - chr2.4:10047365-10047384 None:intergenic 55.0%
GAACCATAGCGTGAGAGCGA+TGG - chr2.4:10047398-10047417 None:intergenic 55.0%
GGCTTCATCGGAGACATAGG+TGG - chr2.4:10047362-10047381 None:intergenic 55.0%
GGGTGAGGAGCTTTCTTGGA+GGG - chr2.4:10046713-10046732 None:intergenic 55.0%
GTCGTCGGAGAAGATGTCGA+CGG - chr2.4:10046754-10046773 None:intergenic 55.0%
GTTCCATCGCTCTCACGCTA+TGG + chr2.4:10047392-10047411 MS.gene31444:CDS 55.0%
TCTTGTCCTGCCCCTGATCT+CGG + chr2.4:10047800-10047819 MS.gene31444:CDS 55.0%
! GGAGACATAGGTGGTGATGC+CGG - chr2.4:10047353-10047372 None:intergenic 55.0%
! TTTTCACCGGGGTGAGCGAA+TGG - chr2.4:10046915-10046934 None:intergenic 55.0%
CGGGTGAGGAGCTTTCTTGG+AGG - chr2.4:10046714-10046733 None:intergenic 60.0%
GACTGTCCATTCGCTCACCC+CGG + chr2.4:10046906-10046925 MS.gene31444:CDS 60.0%
GTCGGAGAAGATGTCGACGG+CGG - chr2.4:10046751-10046770 None:intergenic 60.0%
TCCTGCCCCTGATCTCGGAT+GGG + chr2.4:10047805-10047824 MS.gene31444:CDS 60.0%
! GACATAGGTGGTGATGCCGG+AGG - chr2.4:10047350-10047369 None:intergenic 60.0%
! GTTTGCCCTGAGTATCGCCG+CGG + chr2.4:10046978-10046997 MS.gene31444:CDS 60.0%
!!! ACGGCGGCGAGCTTTTTCAC+CGG - chr2.4:10046928-10046947 None:intergenic 60.0%
AAGCTCGCCGCCGTGATCCA+CGG + chr2.4:10046934-10046953 MS.gene31444:CDS 65.0%
ACCCATCCGAGATCAGGGGC+AGG - chr2.4:10047809-10047828 None:intergenic 65.0%
AGCCACCGCGGCGATACTCA+GGG - chr2.4:10046986-10047005 None:intergenic 65.0%
CGGCGGGTGAGGAGCTTTCT+TGG - chr2.4:10046717-10046736 None:intergenic 65.0%
CTCGTAGCCGGAGCCATGAC+TGG + chr2.4:10046880-10046899 MS.gene31444:CDS 65.0%
GAAACCGCCGTGGATCACGG+CGG - chr2.4:10046944-10046963 None:intergenic 65.0%
GAAGATGTCGACGGCGGTGG+TGG - chr2.4:10046745-10046764 None:intergenic 65.0%
GGAGAAGATGTCGACGGCGG+TGG - chr2.4:10046748-10046767 None:intergenic 65.0%
GTCCTGCCCCTGATCTCGGA+TGG + chr2.4:10047804-10047823 MS.gene31444:CDS 65.0%
!!! CGGCGGCGAGCTTTTTCACC+GGG - chr2.4:10046927-10046946 None:intergenic 65.0%
!!! GGCGGCGAGCTTTTTCACCG+GGG - chr2.4:10046926-10046945 None:intergenic 65.0%
CAGCCACCGCGGCGATACTC+AGG - chr2.4:10046987-10047006 None:intergenic 70.0%
CGCCACGGTTACAGCCACCG+CGG - chr2.4:10046998-10047017 None:intergenic 70.0%
GGCTCCGGCTACGAGTGCAC+CGG - chr2.4:10046875-10046894 None:intergenic 70.0%
TCCGCCGGTGCACTCGTAGC+CGG + chr2.4:10046868-10046887 MS.gene31444:CDS 70.0%
TCCGGCTACGAGTGCACCGG+CGG - chr2.4:10046872-10046891 None:intergenic 70.0%
! CGACGGCGGTGGTGGTGTTG+CGG - chr2.4:10046737-10046756 None:intergenic 70.0%
! TGCCCTGAGTATCGCCGCGG+TGG + chr2.4:10046981-10047000 MS.gene31444:CDS 70.0%
!! TGGTGGTGTTGCGGCGGGTG+AGG - chr2.4:10046728-10046747 None:intergenic 70.0%
CGCCGCGGTGGCTGTAACCG+TGG + chr2.4:10046993-10047012 MS.gene31444:CDS 75.0%
CTCGCCGCCGTGATCCACGG+CGG + chr2.4:10046937-10046956 MS.gene31444:CDS 75.0%
!! CGGCGGTGGTGGTGTTGCGG+CGG - chr2.4:10046734-10046753 None:intergenic 75.0%
!! GGCGGTGGTGGTGTTGCGGC+GGG - chr2.4:10046733-10046752 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 10046615 10047847 10046615 ID=MS.gene31444
chr2.4 mRNA 10046615 10047847 10046615 ID=MS.gene31444.t1;Parent=MS.gene31444
chr2.4 exon 10046615 10047847 10046615 ID=MS.gene31444.t1.exon1;Parent=MS.gene31444.t1
chr2.4 CDS 10046615 10047847 10046615 ID=cds.MS.gene31444.t1;Parent=MS.gene31444.t1
Gene Sequence

>MS.gene31444

ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATCGACATCCCTCCAAGAAAGCTCCTCACCCGCCGCAACACCACCACCGCCGTCGACATCTTCTCCGACGACACCATCCTCCAAAAGTTCCTCCCACACAATGACTCTGACTCAGACTCCGATGATCCTTACTCATCAGATCATTTCCGAATGTATGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCATGACTGGACTGACTGTCCATTCGCTCACCCCGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGTGGCGATACTTGTGAATTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCTGTTACATCATCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGCGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCGCCTCCGGCATCACCACCTATGTCTCCGATGAAGCCACGTAACGGTGTTCCATCGCTCTCACGCTATGGTTCTTCGATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGACGGTTCATCTTCTTCTTCTTCACCAGTTTCTGCTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCTGAGGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCTTCTTCTTTTGATCATCAACAACATTTCAATATTCTTTCACAATCTATTCATCAGAATTTGACACCAAGTTTCAATGATGTTGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAACAACGACAATATTAATAAGGTTGTTGGTGGTGGTGACGTTAATGGTTTGTCTTGTCCTGCCCCTGATCTCGGATGGGTGAATGAATTGCTGATGTAG
Protein sequence

>MS.gene31444.t1

MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTTAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVPSLSRYGSSINSNNLRYRDMLIDLLGSFEGMNFNDGSSSSSSPVSAAKALQIQNMGYLESLDVPEEQNQQQFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNNDNINKVVGGGDVNGLSCPAPDLGWVNELLM