Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31499.t1 | XP_013465065.1 | 99 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 4.30E-187 | 663.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31499.t1 | A0A072VLR0 | 99.0 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 3.1e-187 | 663.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055840 | MS.gene31499 | 0.914766 | 1.30E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31499.t1 | MTR_2g090210 | 99.045 | 314 | 3 | 0 | 1 | 314 | 1 | 314 | 0.0 | 650 |
| MS.gene31499.t1 | MTR_4g044297 | 77.049 | 305 | 64 | 3 | 10 | 314 | 8 | 306 | 7.21e-164 | 458 |
| MS.gene31499.t1 | MTR_6g066280 | 42.724 | 323 | 123 | 6 | 37 | 308 | 12 | 323 | 1.09e-77 | 240 |
| MS.gene31499.t1 | MTR_1g077460 | 45.181 | 332 | 142 | 11 | 11 | 308 | 13 | 338 | 2.64e-76 | 237 |
| MS.gene31499.t1 | MTR_6g082450 | 38.636 | 352 | 143 | 12 | 10 | 314 | 72 | 397 | 8.90e-64 | 207 |
| MS.gene31499.t1 | MTR_4g120990 | 38.838 | 327 | 162 | 9 | 10 | 308 | 71 | 387 | 2.04e-63 | 206 |
| MS.gene31499.t1 | MTR_1g110070 | 39.077 | 325 | 165 | 7 | 10 | 308 | 89 | 406 | 1.72e-62 | 204 |
| MS.gene31499.t1 | MTR_2g035080 | 38.138 | 333 | 155 | 11 | 10 | 308 | 78 | 393 | 1.57e-58 | 193 |
| MS.gene31499.t1 | MTR_1g087830 | 32.993 | 294 | 135 | 7 | 20 | 309 | 65 | 300 | 2.62e-48 | 164 |
| MS.gene31499.t1 | MTR_1g087810 | 34.191 | 272 | 135 | 7 | 44 | 314 | 84 | 312 | 1.34e-41 | 147 |
| MS.gene31499.t1 | MTR_6g044130 | 44.094 | 127 | 52 | 6 | 186 | 294 | 1 | 126 | 7.23e-19 | 81.6 |
| MS.gene31499.t1 | MTR_6g077930 | 27.829 | 327 | 147 | 14 | 42 | 312 | 812 | 1105 | 9.40e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31499.t1 | AT4G03420 | 70.978 | 317 | 79 | 8 | 1 | 313 | 1 | 308 | 1.38e-145 | 412 |
| MS.gene31499.t1 | AT1G03610 | 66.562 | 320 | 86 | 6 | 1 | 313 | 1 | 306 | 5.14e-145 | 410 |
| MS.gene31499.t1 | AT4G28150 | 62.416 | 298 | 74 | 7 | 10 | 302 | 8 | 272 | 1.73e-120 | 348 |
| MS.gene31499.t1 | AT4G28150 | 62.416 | 298 | 72 | 8 | 10 | 302 | 8 | 270 | 5.50e-118 | 341 |
| MS.gene31499.t1 | AT1G03610 | 70.124 | 241 | 55 | 3 | 1 | 236 | 1 | 229 | 4.13e-115 | 332 |
| MS.gene31499.t1 | AT1G73210 | 48.438 | 320 | 128 | 8 | 9 | 310 | 11 | 311 | 1.57e-90 | 273 |
| MS.gene31499.t1 | AT1G73210 | 48.438 | 320 | 128 | 8 | 9 | 310 | 11 | 311 | 1.57e-90 | 273 |
| MS.gene31499.t1 | AT1G73210 | 48.438 | 320 | 126 | 8 | 9 | 310 | 11 | 309 | 2.17e-90 | 272 |
| MS.gene31499.t1 | AT1G17830 | 49.383 | 324 | 133 | 9 | 8 | 308 | 16 | 331 | 1.53e-88 | 268 |
| MS.gene31499.t1 | AT4G28150 | 63.000 | 200 | 54 | 4 | 9 | 203 | 7 | 191 | 8.77e-79 | 239 |
| MS.gene31499.t1 | AT4G16100 | 39.414 | 307 | 172 | 6 | 11 | 310 | 88 | 387 | 5.12e-62 | 202 |
| MS.gene31499.t1 | AT5G49220 | 38.188 | 309 | 167 | 7 | 10 | 308 | 107 | 401 | 9.65e-60 | 196 |
| MS.gene31499.t1 | AT1G15030 | 38.170 | 317 | 172 | 7 | 10 | 308 | 47 | 357 | 1.38e-59 | 195 |
| MS.gene31499.t1 | AT2G01260 | 39.144 | 327 | 147 | 12 | 10 | 308 | 64 | 366 | 4.21e-57 | 189 |
| MS.gene31499.t1 | AT1G15030 | 39.918 | 243 | 124 | 5 | 10 | 234 | 47 | 285 | 9.22e-47 | 159 |
| MS.gene31499.t1 | AT2G01260 | 40.244 | 246 | 113 | 7 | 10 | 234 | 64 | 296 | 1.30e-43 | 152 |
| MS.gene31499.t1 | AT5G23380 | 34.727 | 311 | 177 | 8 | 5 | 309 | 2 | 292 | 8.01e-41 | 144 |
| MS.gene31499.t1 | AT5G23380 | 34.454 | 238 | 129 | 5 | 5 | 234 | 2 | 220 | 5.74e-29 | 111 |
| MS.gene31499.t1 | AT5G23380 | 34.454 | 238 | 129 | 5 | 5 | 234 | 2 | 220 | 5.74e-29 | 111 |
| MS.gene31499.t1 | AT5G08360 | 35.165 | 182 | 89 | 7 | 131 | 310 | 12 | 166 | 5.27e-20 | 86.3 |
| MS.gene31499.t1 | AT2G01260 | 45.977 | 87 | 44 | 2 | 10 | 95 | 64 | 148 | 2.65e-16 | 77.8 |
| MS.gene31499.t1 | AT5G08360 | 35.766 | 137 | 69 | 5 | 175 | 310 | 3 | 121 | 4.15e-16 | 74.3 |
Find 82 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAAACCTGAACGGTTTA+TGG | 0.175719 | 2.4:-10703990 | MS.gene31499:CDS |
| TTACACACCTTATCCATTAA+AGG | 0.190222 | 2.4:+10703005 | None:intergenic |
| CCCATGGGGATGTGATATAT+TGG | 0.259003 | 2.4:+10702226 | None:intergenic |
| ATTTCACCTTAGGTGATCTT+TGG | 0.262043 | 2.4:-10703939 | MS.gene31499:CDS |
| ATATGGAAGAGTTCCTTTAA+TGG | 0.267910 | 2.4:-10703018 | MS.gene31499:CDS |
| ATAGTGACACAAGTCTTTCT+TGG | 0.321291 | 2.4:+10701229 | None:intergenic |
| AGCATCTCTTTGCCAGCATT+TGG | 0.333274 | 2.4:-10701312 | MS.gene31499:CDS |
| ACACTTTCATCTTCATTTCA+AGG | 0.353986 | 2.4:-10702160 | MS.gene31499:intron |
| CTGGCATTTGAATGATAGAT+TGG | 0.354804 | 2.4:-10703078 | MS.gene31499:CDS |
| TCTCCACTAGTTAAGGTGAT+TGG | 0.360355 | 2.4:+10703877 | None:intergenic |
| AAAATCATGATTTATAATAA+AGG | 0.361231 | 2.4:-10704226 | None:intergenic |
| TCATGACTTTAATTACTTCA+TGG | 0.367498 | 2.4:-10701163 | MS.gene31499:CDS |
| AAAGTTGAATATTTCACCTT+AGG | 0.372655 | 2.4:-10703949 | MS.gene31499:CDS |
| GGGTGGTAAAGAGAAGAAAA+AGG | 0.372996 | 2.4:-10701343 | MS.gene31499:CDS |
| ATTAAAGGAACTCTTCCATA+TGG | 0.392939 | 2.4:+10703020 | None:intergenic |
| CCATGGGGATGTGATATATT+GGG | 0.398329 | 2.4:+10702227 | None:intergenic |
| AAGTGTTTCTCCACTAGTTA+AGG | 0.398520 | 2.4:+10703870 | None:intergenic |
| TATGATGAATGGAGTGCTTA+TGG | 0.401502 | 2.4:-10703910 | MS.gene31499:CDS |
| AAGAGTTCCTTTAATGGATA+AGG | 0.405516 | 2.4:-10703012 | MS.gene31499:intron |
| TTTGGAAATGTTATGATGAA+TGG | 0.405932 | 2.4:-10703921 | MS.gene31499:CDS |
| TTTGAAAGATCAAATCCATA+TGG | 0.414270 | 2.4:-10703035 | MS.gene31499:CDS |
| CTCTTTGCCAGCATTTGGAT+TGG | 0.419974 | 2.4:-10701307 | MS.gene31499:CDS |
| AGAGTGAATGTGATAAATTA+TGG | 0.427860 | 2.4:-10703151 | MS.gene31499:CDS |
| GCAACAGCCATCCAACTTGC+TGG | 0.433093 | 2.4:+10702371 | None:intergenic |
| CATGACTTTAATTACTTCAT+GGG | 0.433693 | 2.4:-10701162 | MS.gene31499:CDS |
| TATTGAGTGTGGCAGATTCA+TGG | 0.445660 | 2.4:-10701209 | MS.gene31499:CDS |
| ATTCATGGTTGAAGCAACTA+AGG | 0.449277 | 2.4:-10701194 | MS.gene31499:CDS |
| TTCAGGGAAGAAACGGAATC+AGG | 0.449720 | 2.4:-10703218 | MS.gene31499:intron |
| ATCTTTGATTGTTCTTCCCA+TGG | 0.455135 | 2.4:+10702210 | None:intergenic |
| GGAGGGAATGTGTGGATTGG+AGG | 0.458294 | 2.4:-10701267 | MS.gene31499:CDS |
| TCAATCTCAATTTCTACCTA+AGG | 0.458439 | 2.4:-10704152 | MS.gene31499:intron |
| CAAGGAGGGAATGTGTGGAT+TGG | 0.461911 | 2.4:-10701270 | MS.gene31499:CDS |
| ATGGTTGCCATAAACCGTTC+AGG | 0.465367 | 2.4:+10703983 | None:intergenic |
| AGAAATTGAGATTGAACAAC+CGG | 0.468210 | 2.4:+10704160 | None:intergenic |
| GATATGAACAAGATTGTCTC+TGG | 0.489869 | 2.4:-10703097 | MS.gene31499:CDS |
| TGGGTATTTCAGGGAAGAAA+CGG | 0.490647 | 2.4:-10703225 | MS.gene31499:intron |
| TCTTTGATTGTTCTTCCCAT+GGG | 0.503871 | 2.4:+10702211 | None:intergenic |
| GGACCTAGATGATGATATTG+AGG | 0.510983 | 2.4:-10701364 | MS.gene31499:CDS |
| TGGCATTTGAATGATAGATT+GGG | 0.514072 | 2.4:-10703077 | MS.gene31499:CDS |
| CTTCTTAATGACATCAACCC+TGG | 0.520998 | 2.4:+10702407 | None:intergenic |
| CACCCTCAATATCATCATCT+AGG | 0.535416 | 2.4:+10701361 | None:intergenic |
| ATCTGAATTGCAGAAAGATA+AGG | 0.538537 | 2.4:+10703832 | None:intergenic |
| GATTGGAGGAAATCGTGGTC+GGG | 0.544061 | 2.4:-10701253 | MS.gene31499:CDS |
| TGGATCTTTCACCAGCAAGT+TGG | 0.547423 | 2.4:-10702382 | MS.gene31499:CDS |
| GAATGGAGTGCTTATGGAGC+TGG | 0.554473 | 2.4:-10703904 | MS.gene31499:CDS |
| ATGTGATAAATTATGGAGAT+GGG | 0.556071 | 2.4:-10703144 | MS.gene31499:CDS |
| CAAGTTGGATGGCTGTTGCT+TGG | 0.557839 | 2.4:-10702367 | MS.gene31499:intron |
| TACTTCATGGGCATTCGTCA+TGG | 0.562894 | 2.4:-10701150 | MS.gene31499:CDS |
| TTCTTAATGACATCAACCCT+GGG | 0.571402 | 2.4:+10702408 | None:intergenic |
| TCTTTCACCAGCAAGTTGGA+TGG | 0.574620 | 2.4:-10702378 | MS.gene31499:CDS |
| CCCAATATATCACATCCCCA+TGG | 0.578170 | 2.4:-10702227 | MS.gene31499:CDS |
| CTTTGATTGTTCTTCCCATG+GGG | 0.578586 | 2.4:+10702212 | None:intergenic |
| GTTGATGTCATTAAGAAGTG+TGG | 0.579821 | 2.4:-10702402 | MS.gene31499:CDS |
| AATGTGATAAATTATGGAGA+TGG | 0.580770 | 2.4:-10703145 | MS.gene31499:CDS |
| ATGAAAGTGTGTGGTAAGTG+AGG | 0.583785 | 2.4:+10702173 | None:intergenic |
| AATCAGGTGACTGTGAGACA+AGG | 0.587107 | 2.4:-10703202 | MS.gene31499:CDS |
| GACCTAGATGATGATATTGA+GGG | 0.593084 | 2.4:-10701363 | MS.gene31499:CDS |
| ACATTTCCAAAGATCACCTA+AGG | 0.594455 | 2.4:+10703933 | None:intergenic |
| GATAAATTATGGAGATGGGA+TGG | 0.595846 | 2.4:-10703140 | MS.gene31499:CDS |
| TATGTTGCCAATCCAAATGC+TGG | 0.595862 | 2.4:+10701300 | None:intergenic |
| TTCATGGTTGAAGCAACTAA+GGG | 0.598042 | 2.4:-10701193 | MS.gene31499:CDS |
| GATGGAACTTCATCAGAAGA+AGG | 0.598419 | 2.4:-10703122 | MS.gene31499:CDS |
| GTTCCAATCACCTTAACTAG+TGG | 0.599506 | 2.4:-10703880 | MS.gene31499:CDS |
| GGATTAGCTCAAAGATACCC+AGG | 0.605062 | 2.4:-10702425 | MS.gene31499:CDS |
| CAACATACAAGATGCAAGGA+GGG | 0.610968 | 2.4:-10701284 | MS.gene31499:CDS |
| AGATGCAAGGAGGGAATGTG+TGG | 0.611060 | 2.4:-10701275 | MS.gene31499:CDS |
| TGAACGGTTTATGGCAACCA+TGG | 0.612436 | 2.4:-10703981 | MS.gene31499:CDS |
| GGATTGGAGGAAATCGTGGT+CGG | 0.614411 | 2.4:-10701254 | MS.gene31499:CDS |
| CCAATATATCACATCCCCAT+GGG | 0.620327 | 2.4:-10702226 | MS.gene31499:CDS |
| ATCAGGTGACTGTGAGACAA+GGG | 0.627184 | 2.4:-10703201 | MS.gene31499:CDS |
| GAACGGTTTATGGCAACCAT+GGG | 0.632610 | 2.4:-10703980 | MS.gene31499:CDS |
| TTGGCAACATACAAGATGCA+AGG | 0.637692 | 2.4:-10701288 | MS.gene31499:CDS |
| TCTGAGATTACAAACCTGAA+CGG | 0.669550 | 2.4:-10703997 | MS.gene31499:CDS |
| GATTAGCTCAAAGATACCCA+GGG | 0.670315 | 2.4:-10702424 | MS.gene31499:CDS |
| GGAACTTCATCAGAAGAAGG+AGG | 0.670655 | 2.4:-10703119 | MS.gene31499:CDS |
| CTAGATGATGATATTGAGGG+TGG | 0.674253 | 2.4:-10701360 | MS.gene31499:CDS |
| GTGTGGATTGGAGGAAATCG+TGG | 0.675124 | 2.4:-10701258 | MS.gene31499:CDS |
| GCAACATACAAGATGCAAGG+AGG | 0.683064 | 2.4:-10701285 | MS.gene31499:CDS |
| GTGGTAAGTGAGGAAGCATG+TGG | 0.683787 | 2.4:+10702183 | None:intergenic |
| TTTCGTTCGATGTACTACAC+CGG | 0.694801 | 2.4:-10704179 | MS.gene31499:CDS |
| GAAATGAAGATGAAAGTGTG+TGG | 0.729995 | 2.4:+10702164 | None:intergenic |
| ACTTGTGTCACTATTGAGTG+TGG | 0.731178 | 2.4:-10701220 | MS.gene31499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAATGAATTTGAAA+TGG | - | chr2.4:10702121-10702140 | MS.gene31499:intron | 10.0% |
| !!! | AATAATGATTTTTAAATTAC+GGG | - | chr2.4:10701819-10701838 | MS.gene31499:intron | 10.0% |
| !!! | ATATTTTTGTTTTACTATAT+TGG | - | chr2.4:10701858-10701877 | MS.gene31499:intron | 10.0% |
| !!! | TATAAATTAACTTTTAATCA+AGG | + | chr2.4:10702533-10702552 | None:intergenic | 10.0% |
| !!! | TTAATTAATGAATTTGAAAT+GGG | - | chr2.4:10702122-10702141 | MS.gene31499:intron | 10.0% |
| !!! | TTTTTTATAGGTAAATATTT+TGG | - | chr2.4:10702414-10702433 | MS.gene31499:CDS | 10.0% |
| !! | AAAAAAAATTCAATTGAAGA+CGG | - | chr2.4:10703763-10703782 | MS.gene31499:intron | 15.0% |
| !! | AATAAAAATTTCATGAAAGT+TGG | + | chr2.4:10703594-10703613 | None:intergenic | 15.0% |
| !! | ACATCAATCATATAAATAAA+TGG | - | chr2.4:10702846-10702865 | MS.gene31499:intron | 15.0% |
| !! | ATAAAAATTTCATGAAAGTT+GGG | + | chr2.4:10703593-10703612 | None:intergenic | 15.0% |
| !! | GTAACAAATTTATTTAATTG+AGG | - | chr2.4:10703092-10703111 | MS.gene31499:CDS | 15.0% |
| !! | GTAATAAATTTGATTCATTA+TGG | - | chr2.4:10701578-10701597 | MS.gene31499:intron | 15.0% |
| !! | TAATTAATTAAAGTGTGAAT+AGG | + | chr2.4:10703918-10703937 | None:intergenic | 15.0% |
| !! | TTGATAAGAAATAAAGATAA+AGG | + | chr2.4:10702740-10702759 | None:intergenic | 15.0% |
| !!! | AGTTAGAATTTATCTTTTTT+AGG | + | chr2.4:10702654-10702673 | None:intergenic | 15.0% |
| !!! | ATTTTTTGATGTTAAATTGA+CGG | - | chr2.4:10703248-10703267 | MS.gene31499:intron | 15.0% |
| !!! | GTTAGAATTTATCTTTTTTA+GGG | + | chr2.4:10702653-10702672 | None:intergenic | 15.0% |
| !!! | TTAGAATTTATCTTTTTTAG+GGG | + | chr2.4:10702652-10702671 | None:intergenic | 15.0% |
| !! | AAAAATATCTAATAAGAGAC+AGG | + | chr2.4:10703829-10703848 | None:intergenic | 20.0% |
| !! | AATTGATTAGGGATATAAAT+TGG | - | chr2.4:10702580-10702599 | MS.gene31499:intron | 20.0% |
| !! | ATTGATTAGGGATATAAATT+GGG | - | chr2.4:10702581-10702600 | MS.gene31499:intron | 20.0% |
| !! | GAATAATAAATAGTTGTGAT+TGG | - | chr2.4:10702084-10702103 | MS.gene31499:intron | 20.0% |
| !! | GGGAATATTTAAATAATCAT+AGG | + | chr2.4:10703943-10703962 | None:intergenic | 20.0% |
| !! | TAGTAAATTTGACGAAATTA+TGG | - | chr2.4:10701886-10701905 | MS.gene31499:intron | 20.0% |
| !! | TATTCACCAAATTATTGTTA+GGG | + | chr2.4:10702616-10702635 | None:intergenic | 20.0% |
| !! | TGAGTTCAATATACTAATAA+AGG | + | chr2.4:10703657-10703676 | None:intergenic | 20.0% |
| !! | TGGATTTCTTAAATTGATTA+GGG | - | chr2.4:10702569-10702588 | MS.gene31499:intron | 20.0% |
| !! | TTGGATTTCTTAAATTGATT+AGG | - | chr2.4:10702568-10702587 | MS.gene31499:intron | 20.0% |
| !!! | AATATCTCAGATTTTTGATT+TGG | - | chr2.4:10702032-10702051 | MS.gene31499:intron | 20.0% |
| !!! | ATTTTTAAATTACGGGTTTT+AGG | - | chr2.4:10701826-10701845 | MS.gene31499:intron | 20.0% |
| !!! | CTTACTCTATGATTTTTTAT+AGG | - | chr2.4:10702402-10702421 | MS.gene31499:CDS | 20.0% |
| !!! | GATTTTGTTACTGTTTATTA+GGG | - | chr2.4:10701773-10701792 | MS.gene31499:intron | 20.0% |
| !!! | TATATCTATGTTTTGTCTTT+TGG | - | chr2.4:10702549-10702568 | MS.gene31499:intron | 20.0% |
| !!! | TGATTTTGTTACTGTTTATT+AGG | - | chr2.4:10701772-10701791 | MS.gene31499:intron | 20.0% |
| !!! | TTTTTTCAATTTCAGATATC+TGG | - | chr2.4:10702920-10702939 | MS.gene31499:intron | 20.0% |
| ! | AAACATGATCTTTACATAGT+GGG | + | chr2.4:10701744-10701763 | None:intergenic | 25.0% |
| ! | AAAGTTGAATATTTCACCTT+AGG | - | chr2.4:10701417-10701436 | MS.gene31499:intron | 25.0% |
| ! | AATAGTTCCTACTTATTCAA+AGG | + | chr2.4:10702682-10702701 | None:intergenic | 25.0% |
| ! | AATCATTATTATACAACCAG+TGG | + | chr2.4:10701809-10701828 | None:intergenic | 25.0% |
| ! | AATGTGATAAATTATGGAGA+TGG | - | chr2.4:10702221-10702240 | MS.gene31499:CDS | 25.0% |
| ! | ACAATGGTAGAATTTAATGA+AGG | + | chr2.4:10701658-10701677 | None:intergenic | 25.0% |
| ! | ACCGTACAAAAGTAAAATAA+CGG | + | chr2.4:10703418-10703437 | None:intergenic | 25.0% |
| ! | AGAGTGAATGTGATAAATTA+TGG | - | chr2.4:10702215-10702234 | MS.gene31499:CDS | 25.0% |
| ! | ATAAGAAGAACAAAAACCTT+AGG | + | chr2.4:10701233-10701252 | None:intergenic | 25.0% |
| ! | ATCATAGAGTAAGAAAACTA+AGG | + | chr2.4:10702395-10702414 | None:intergenic | 25.0% |
| ! | ATGTGATAAATTATGGAGAT+GGG | - | chr2.4:10702222-10702241 | MS.gene31499:CDS | 25.0% |
| ! | ATTATGGTTGAAAATTGGAT+TGG | - | chr2.4:10701594-10701613 | MS.gene31499:intron | 25.0% |
| ! | CATGACTTTAATTACTTCAT+GGG | - | chr2.4:10704204-10704223 | MS.gene31499:CDS | 25.0% |
| ! | CTATTACCCTAACAATAATT+TGG | - | chr2.4:10702607-10702626 | MS.gene31499:intron | 25.0% |
| ! | CTATTCACCAAATTATTGTT+AGG | + | chr2.4:10702617-10702636 | None:intergenic | 25.0% |
| ! | GATTCATTATGGTTGAAAAT+TGG | - | chr2.4:10701589-10701608 | MS.gene31499:intron | 25.0% |
| ! | TAAACATGATCTTTACATAG+TGG | + | chr2.4:10701745-10701764 | None:intergenic | 25.0% |
| ! | TCATGACTTTAATTACTTCA+TGG | - | chr2.4:10704203-10704222 | MS.gene31499:CDS | 25.0% |
| ! | TTTGAAAGATCAAATCCATA+TGG | - | chr2.4:10702331-10702350 | MS.gene31499:intron | 25.0% |
| ! | TTTGGAAATGTTATGATGAA+TGG | - | chr2.4:10701445-10701464 | MS.gene31499:intron | 25.0% |
| ! | TTTGGTAGGATAATTAACAT+AGG | - | chr2.4:10702050-10702069 | MS.gene31499:intron | 25.0% |
| !! | AAGGTGTTTGTTTATGTATA+GGG | - | chr2.4:10703977-10703996 | MS.gene31499:CDS | 25.0% |
| !! | AATTTGAAATGGGTATTTCA+GGG | - | chr2.4:10702132-10702151 | MS.gene31499:intron | 25.0% |
| !! | ATATGTTATTGTTGTTGTCT+TGG | - | chr2.4:10701284-10701303 | MS.gene31499:CDS | 25.0% |
| !!! | AAAGGTGTTTGTTTATGTAT+AGG | - | chr2.4:10703976-10703995 | MS.gene31499:CDS | 25.0% |
| !!! | ACCGTTATTTTACTTTTGTA+CGG | - | chr2.4:10703414-10703433 | MS.gene31499:intron | 25.0% |
| !!! | ATCTAGTTCTATAGTATCAT+AGG | - | chr2.4:10703485-10703504 | MS.gene31499:intron | 25.0% |
| !!! | GAATATACTTTTTGTTTTCC+AGG | - | chr2.4:10703114-10703133 | MS.gene31499:CDS | 25.0% |
| AACATGATCTTTACATAGTG+GGG | + | chr2.4:10701743-10701762 | None:intergenic | 30.0% | |
| AATAAGAAGTAGCTAAGAGT+AGG | + | chr2.4:10703048-10703067 | None:intergenic | 30.0% | |
| ACACCTTTCTTTAGTTAGTA+TGG | + | chr2.4:10703964-10703983 | None:intergenic | 30.0% | |
| ACACTTTCATCTTCATTTCA+AGG | - | chr2.4:10703206-10703225 | MS.gene31499:CDS | 30.0% | |
| AGAAATTGAGATTGAACAAC+CGG | + | chr2.4:10701209-10701228 | None:intergenic | 30.0% | |
| ATATGGAAGAGTTCCTTTAA+TGG | - | chr2.4:10702348-10702367 | MS.gene31499:intron | 30.0% | |
| ATCTGAATTGCAGAAAGATA+AGG | + | chr2.4:10701537-10701556 | None:intergenic | 30.0% | |
| ATTAAAGGAACTCTTCCATA+TGG | + | chr2.4:10702349-10702368 | None:intergenic | 30.0% | |
| CACCTTTCTTTAGTTAGTAT+GGG | + | chr2.4:10703963-10703982 | None:intergenic | 30.0% | |
| CTATTGACCTTTGAATAAGT+AGG | - | chr2.4:10702672-10702691 | MS.gene31499:intron | 30.0% | |
| GTAAAGAGAAGAAAAAGGAA+GGG | - | chr2.4:10704028-10704047 | MS.gene31499:intron | 30.0% | |
| TAAAGAGAAGAAAAAGGAAG+GGG | - | chr2.4:10704029-10704048 | MS.gene31499:intron | 30.0% | |
| TCAATCTCAATTTCTACCTA+AGG | - | chr2.4:10701214-10701233 | MS.gene31499:CDS | 30.0% | |
| TGATGAATTTGTCAGAATCA+CGG | + | chr2.4:10701972-10701991 | None:intergenic | 30.0% | |
| TGGCATTTGAATGATAGATT+GGG | - | chr2.4:10702289-10702308 | MS.gene31499:intron | 30.0% | |
| TGTTGAATTTGTGACACAAA+TGG | - | chr2.4:10702896-10702915 | MS.gene31499:intron | 30.0% | |
| TGTTTGTTTATGTATAGGGA+TGG | - | chr2.4:10703981-10704000 | MS.gene31499:CDS | 30.0% | |
| TTACACACCTTATCCATTAA+AGG | + | chr2.4:10702364-10702383 | None:intergenic | 30.0% | |
| TTCCCATACTAACTAAAGAA+AGG | - | chr2.4:10703958-10703977 | MS.gene31499:CDS | 30.0% | |
| ! | AAGAGTTCCTTTAATGGATA+AGG | - | chr2.4:10702354-10702373 | MS.gene31499:intron | 30.0% |
| ! | GAATTTGAAATGGGTATTTC+AGG | - | chr2.4:10702131-10702150 | MS.gene31499:intron | 30.0% |
| ! | TAGTTCTATAGTATCATAGG+TGG | - | chr2.4:10703488-10703507 | MS.gene31499:intron | 30.0% |
| ! | TTTTAGTCATATGATGTGAG+AGG | - | chr2.4:10703845-10703864 | MS.gene31499:CDS | 30.0% |
| ! | TTTTCACTAGCAATAGTTTC+AGG | - | chr2.4:10701556-10701575 | MS.gene31499:intron | 30.0% |
| ! | TTTTCCTCAACTTATCAAGA+TGG | - | chr2.4:10702700-10702719 | MS.gene31499:intron | 30.0% |
| !!! | TCTCAGATTTTTGATTTGGT+AGG | - | chr2.4:10702036-10702055 | MS.gene31499:intron | 30.0% |
| !!! | TTTAAATTACGGGTTTTAGG+TGG | - | chr2.4:10701829-10701848 | MS.gene31499:intron | 30.0% |
| AACACCTATGAAAGCAACAA+TGG | + | chr2.4:10701674-10701693 | None:intergenic | 35.0% | |
| AACTCAGATTCTTTGTACCA+TGG | - | chr2.4:10703671-10703690 | MS.gene31499:intron | 35.0% | |
| AAGTGTTTCTCCACTAGTTA+AGG | + | chr2.4:10701499-10701518 | None:intergenic | 35.0% | |
| ACAAAATGTCCTATCACCTA+TGG | + | chr2.4:10701712-10701731 | None:intergenic | 35.0% | |
| ACAACTTTGTCTAACTTGGA+TGG | - | chr2.4:10702798-10702817 | MS.gene31499:intron | 35.0% | |
| ACACACTTGGATACATAACT+AGG | + | chr2.4:10703884-10703903 | None:intergenic | 35.0% | |
| ACATTTCCAAAGATCACCTA+AGG | + | chr2.4:10701436-10701455 | None:intergenic | 35.0% | |
| ACCTATGGTTAGACATGTTT+GGG | + | chr2.4:10701697-10701716 | None:intergenic | 35.0% | |
| AGATCAAACTGTGTGAAAAC+TGG | - | chr2.4:10703377-10703396 | MS.gene31499:intron | 35.0% | |
| ATAGTGACACAAGTCTTTCT+TGG | + | chr2.4:10704140-10704159 | None:intergenic | 35.0% | |
| ATCCAAGTTAGACAAAGTTG+TGG | + | chr2.4:10702799-10702818 | None:intergenic | 35.0% | |
| ATCTTTGATTGTTCTTCCCA+TGG | + | chr2.4:10703159-10703178 | None:intergenic | 35.0% | |
| ATTCATGGTTGAAGCAACTA+AGG | - | chr2.4:10704172-10704191 | MS.gene31499:CDS | 35.0% | |
| ATTTCACCTTAGGTGATCTT+TGG | - | chr2.4:10701427-10701446 | MS.gene31499:intron | 35.0% | |
| CATAGACATGTCTATGACAT+TGG | - | chr2.4:10703618-10703637 | MS.gene31499:intron | 35.0% | |
| CATGAAAGTTGGGATTTGAA+AGG | + | chr2.4:10703583-10703602 | None:intergenic | 35.0% | |
| CTGGCATTTGAATGATAGAT+TGG | - | chr2.4:10702288-10702307 | MS.gene31499:intron | 35.0% | |
| CTTTCCATCTTGATAAGTTG+AGG | + | chr2.4:10702707-10702726 | None:intergenic | 35.0% | |
| GACCTAGATGATGATATTGA+GGG | - | chr2.4:10704003-10704022 | MS.gene31499:intron | 35.0% | |
| GATAAATTATGGAGATGGGA+TGG | - | chr2.4:10702226-10702245 | MS.gene31499:CDS | 35.0% | |
| GATATGAACAAGATTGTCTC+TGG | - | chr2.4:10702269-10702288 | MS.gene31499:intron | 35.0% | |
| GGCAACAAACAATAGAAAGT+AGG | + | chr2.4:10702512-10702531 | None:intergenic | 35.0% | |
| GGTAAAGAGAAGAAAAAGGA+AGG | - | chr2.4:10704027-10704046 | MS.gene31499:intron | 35.0% | |
| GTTGATGTCATTAAGAAGTG+TGG | - | chr2.4:10702964-10702983 | MS.gene31499:intron | 35.0% | |
| TAGCTATAGTATCATGAACC+TGG | - | chr2.4:10703279-10703298 | MS.gene31499:intron | 35.0% | |
| TCTTTGATTGTTCTTCCCAT+GGG | + | chr2.4:10703158-10703177 | None:intergenic | 35.0% | |
| TTACAAACCTGAACGGTTTA+TGG | - | chr2.4:10701376-10701395 | MS.gene31499:intron | 35.0% | |
| TTCATGGTTGAAGCAACTAA+GGG | - | chr2.4:10704173-10704192 | MS.gene31499:CDS | 35.0% | |
| TTCCACAACTTTGTCTAACT+TGG | - | chr2.4:10702794-10702813 | MS.gene31499:intron | 35.0% | |
| TTCTTAATGACATCAACCCT+GGG | + | chr2.4:10702961-10702980 | None:intergenic | 35.0% | |
| TTTCGAATTTCGATGTTCCT+CGG | - | chr2.4:10702446-10702465 | MS.gene31499:intron | 35.0% | |
| ! | GAAATGAAGATGAAAGTGTG+TGG | + | chr2.4:10703205-10703224 | None:intergenic | 35.0% |
| ! | TATGATGAATGGAGTGCTTA+TGG | - | chr2.4:10701456-10701475 | MS.gene31499:intron | 35.0% |
| ! | TCTGAGATTACAAACCTGAA+CGG | - | chr2.4:10701369-10701388 | MS.gene31499:CDS | 35.0% |
| !! | TCTACCATTGTTGCTTTCAT+AGG | - | chr2.4:10701667-10701686 | MS.gene31499:intron | 35.0% |
| !! | TGTCTAACTTGGATGGATTA+TGG | - | chr2.4:10702805-10702824 | MS.gene31499:intron | 35.0% |
| AGACATGATCTCAACTCGTT+TGG | + | chr2.4:10703743-10703762 | None:intergenic | 40.0% | |
| CAACATACAAGATGCAAGGA+GGG | - | chr2.4:10704082-10704101 | MS.gene31499:intron | 40.0% | |
| CACCCTCAATATCATCATCT+AGG | + | chr2.4:10704008-10704027 | None:intergenic | 40.0% | |
| CACCTATGGTTAGACATGTT+TGG | + | chr2.4:10701698-10701717 | None:intergenic | 40.0% | |
| CATGTCTAACCATAGGTGAT+AGG | - | chr2.4:10701700-10701719 | MS.gene31499:intron | 40.0% | |
| CCAATATATCACATCCCCAT+GGG | - | chr2.4:10703140-10703159 | MS.gene31499:CDS | 40.0% | |
| CCATGGGGATGTGATATATT+GGG | + | chr2.4:10703142-10703161 | None:intergenic | 40.0% | |
| CTAGATGATGATATTGAGGG+TGG | - | chr2.4:10704006-10704025 | MS.gene31499:intron | 40.0% | |
| CTATAGTATCATAGGTGGCT+AGG | - | chr2.4:10703493-10703512 | MS.gene31499:intron | 40.0% | |
| CTTCTTAATGACATCAACCC+TGG | + | chr2.4:10702962-10702981 | None:intergenic | 40.0% | |
| CTTTGATTGTTCTTCCCATG+GGG | + | chr2.4:10703157-10703176 | None:intergenic | 40.0% | |
| GAAGTAGCTAAGAGTAGGAT+AGG | + | chr2.4:10703043-10703062 | None:intergenic | 40.0% | |
| GATGGAACTTCATCAGAAGA+AGG | - | chr2.4:10702244-10702263 | MS.gene31499:intron | 40.0% | |
| GATGTGATATATTGGGTACC+TGG | + | chr2.4:10703135-10703154 | None:intergenic | 40.0% | |
| GGACCTAGATGATGATATTG+AGG | - | chr2.4:10704002-10704021 | MS.gene31499:intron | 40.0% | |
| GGGTGGTAAAGAGAAGAAAA+AGG | - | chr2.4:10704023-10704042 | MS.gene31499:intron | 40.0% | |
| GGTAATCAATGTGACACACT+TGG | + | chr2.4:10703897-10703916 | None:intergenic | 40.0% | |
| GTTCCAATCACCTTAACTAG+TGG | - | chr2.4:10701486-10701505 | MS.gene31499:intron | 40.0% | |
| TATGTTGCCAATCCAAATGC+TGG | + | chr2.4:10704069-10704088 | None:intergenic | 40.0% | |
| TATTGAGTGTGGCAGATTCA+TGG | - | chr2.4:10704157-10704176 | MS.gene31499:CDS | 40.0% | |
| TATTGCGTGTAATTGCGTGA+AGG | + | chr2.4:10703321-10703340 | None:intergenic | 40.0% | |
| TCAGCCGTCTGATCTTTAAT+CGG | - | chr2.4:10703348-10703367 | MS.gene31499:intron | 40.0% | |
| TCCCAAACATGTCTAACCAT+AGG | - | chr2.4:10701693-10701712 | MS.gene31499:intron | 40.0% | |
| TCTCCACTAGTTAAGGTGAT+TGG | + | chr2.4:10701492-10701511 | None:intergenic | 40.0% | |
| TGGGTATTTCAGGGAAGAAA+CGG | - | chr2.4:10702141-10702160 | MS.gene31499:intron | 40.0% | |
| TTGGCAACATACAAGATGCA+AGG | - | chr2.4:10704078-10704097 | MS.gene31499:intron | 40.0% | |
| TTTCGTTCGATGTACTACAC+CGG | - | chr2.4:10701187-10701206 | MS.gene31499:CDS | 40.0% | |
| ! | ACTTGTGTCACTATTGAGTG+TGG | - | chr2.4:10704146-10704165 | MS.gene31499:intron | 40.0% |
| ! | ATGAAAGTGTGTGGTAAGTG+AGG | + | chr2.4:10703196-10703215 | None:intergenic | 40.0% |
| ! | GATTAGCTCAAAGATACCCA+GGG | - | chr2.4:10702942-10702961 | MS.gene31499:intron | 40.0% |
| ! | GTCACCGATTAAAGATCAGA+CGG | + | chr2.4:10703355-10703374 | None:intergenic | 40.0% |
| ! | TTAGGGTCAAACTTTTCCAC+TGG | - | chr2.4:10701790-10701809 | MS.gene31499:intron | 40.0% |
| !! | TCAACTTTTTCTCTCTCCCA+TGG | + | chr2.4:10701405-10701424 | None:intergenic | 40.0% |
| !!! | AAATTACGGGTTTTAGGTGG+TGG | - | chr2.4:10701832-10701851 | MS.gene31499:intron | 40.0% |
| !!! | AATTACGGGTTTTAGGTGGT+GGG | - | chr2.4:10701833-10701852 | MS.gene31499:intron | 40.0% |
| AATCAGGTGACTGTGAGACA+AGG | - | chr2.4:10702164-10702183 | MS.gene31499:CDS | 45.0% | |
| AGCATCTCTTTGCCAGCATT+TGG | - | chr2.4:10704054-10704073 | MS.gene31499:intron | 45.0% | |
| ATCAGGTGACTGTGAGACAA+GGG | - | chr2.4:10702165-10702184 | MS.gene31499:CDS | 45.0% | |
| ATCGAGCTAGAAAGACACCA+TGG | + | chr2.4:10703691-10703710 | None:intergenic | 45.0% | |
| ATGGTTGCCATAAACCGTTC+AGG | + | chr2.4:10701386-10701405 | None:intergenic | 45.0% | |
| ATGTGAGAGGATCCTAACTC+GGG | - | chr2.4:10703858-10703877 | MS.gene31499:CDS | 45.0% | |
| CCCAATATATCACATCCCCA+TGG | - | chr2.4:10703139-10703158 | MS.gene31499:CDS | 45.0% | |
| CCCATGGGGATGTGATATAT+TGG | + | chr2.4:10703143-10703162 | None:intergenic | 45.0% | |
| CTCTTTGCCAGCATTTGGAT+TGG | - | chr2.4:10704059-10704078 | MS.gene31499:intron | 45.0% | |
| GAACGGTTTATGGCAACCAT+GGG | - | chr2.4:10701386-10701405 | MS.gene31499:intron | 45.0% | |
| GATGTGAGAGGATCCTAACT+CGG | - | chr2.4:10703857-10703876 | MS.gene31499:CDS | 45.0% | |
| GCAACATACAAGATGCAAGG+AGG | - | chr2.4:10704081-10704100 | MS.gene31499:intron | 45.0% | |
| GGAACTTCATCAGAAGAAGG+AGG | - | chr2.4:10702247-10702266 | MS.gene31499:intron | 45.0% | |
| TACATAACTAGGCCCGAGTT+AGG | + | chr2.4:10703873-10703892 | None:intergenic | 45.0% | |
| TACTTCATGGGCATTCGTCA+TGG | - | chr2.4:10704216-10704235 | MS.gene31499:CDS | 45.0% | |
| TGAACGGTTTATGGCAACCA+TGG | - | chr2.4:10701385-10701404 | MS.gene31499:intron | 45.0% | |
| TGGATCTTTCACCAGCAAGT+TGG | - | chr2.4:10702984-10703003 | MS.gene31499:intron | 45.0% | |
| TTCAGGGAAGAAACGGAATC+AGG | - | chr2.4:10702148-10702167 | MS.gene31499:intron | 45.0% | |
| ! | TCTTTCACCAGCAAGTTGGA+TGG | - | chr2.4:10702988-10703007 | MS.gene31499:intron | 45.0% |
| !! | GGATTAGCTCAAAGATACCC+AGG | - | chr2.4:10702941-10702960 | MS.gene31499:intron | 45.0% |
| !!! | TAATAATGATTTTTAAATTA+CGG | - | chr2.4:10701818-10701837 | MS.gene31499:intron | 5.0% |
| AGATGCAAGGAGGGAATGTG+TGG | - | chr2.4:10704091-10704110 | MS.gene31499:intron | 50.0% | |
| CAAGGAGGGAATGTGTGGAT+TGG | - | chr2.4:10704096-10704115 | MS.gene31499:intron | 50.0% | |
| CTGCGTGAAGCAATTACAGC+AGG | - | chr2.4:10703460-10703479 | MS.gene31499:intron | 50.0% | |
| GATTGGAGGAAATCGTGGTC+GGG | - | chr2.4:10704113-10704132 | MS.gene31499:intron | 50.0% | |
| GGAGTTACAGCAGGAAATCC+AGG | + | chr2.4:10703300-10703319 | None:intergenic | 50.0% | |
| GGATTGGAGGAAATCGTGGT+CGG | - | chr2.4:10704112-10704131 | MS.gene31499:intron | 50.0% | |
| TTGCGTGAAGGAGTTACAGC+AGG | + | chr2.4:10703309-10703328 | None:intergenic | 50.0% | |
| ! | CAAGTTGGATGGCTGTTGCT+TGG | - | chr2.4:10702999-10703018 | MS.gene31499:intron | 50.0% |
| ! | GAATGGAGTGCTTATGGAGC+TGG | - | chr2.4:10701462-10701481 | MS.gene31499:intron | 50.0% |
| ! | GTGGTAAGTGAGGAAGCATG+TGG | + | chr2.4:10703186-10703205 | None:intergenic | 50.0% |
| !! | GTGTGGATTGGAGGAAATCG+TGG | - | chr2.4:10704108-10704127 | MS.gene31499:intron | 50.0% |
| GCAACAGCCATCCAACTTGC+TGG | + | chr2.4:10702998-10703017 | None:intergenic | 55.0% | |
| TCAGCTCAGATGATGAGCCG+AGG | + | chr2.4:10702466-10702485 | None:intergenic | 55.0% | |
| !! | GGAGGGAATGTGTGGATTGG+AGG | - | chr2.4:10704099-10704118 | MS.gene31499:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 10701146 | 10704242 | 10701146 | ID=MS.gene31499 |
| chr2.4 | mRNA | 10701146 | 10704242 | 10701146 | ID=MS.gene31499.t1;Parent=MS.gene31499 |
| chr2.4 | exon | 10704153 | 10704242 | 10704153 | ID=MS.gene31499.t1.exon1;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10704153 | 10704242 | 10704153 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| chr2.4 | exon | 10703811 | 10704019 | 10703811 | ID=MS.gene31499.t1.exon2;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10703811 | 10704019 | 10703811 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| chr2.4 | exon | 10703013 | 10703235 | 10703013 | ID=MS.gene31499.t1.exon3;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10703013 | 10703235 | 10703013 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| chr2.4 | exon | 10702368 | 10702453 | 10702368 | ID=MS.gene31499.t1.exon4;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10702368 | 10702453 | 10702368 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| chr2.4 | exon | 10702161 | 10702252 | 10702161 | ID=MS.gene31499.t1.exon5;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10702161 | 10702252 | 10702161 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| chr2.4 | exon | 10701146 | 10701390 | 10701146 | ID=MS.gene31499.t1.exon6;Parent=MS.gene31499.t1 |
| chr2.4 | CDS | 10701146 | 10701390 | 10701146 | ID=cds.MS.gene31499.t1;Parent=MS.gene31499.t1 |
| Gene Sequence |
| Protein sequence |
