Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055840.t1 | XP_013465065.1 | 87.9 | 314 | 2 | 1 | 1 | 278 | 1 | 314 | 1.50E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055840.t1 | A0A072VLR0 | 87.9 | 314 | 2 | 1 | 1 | 278 | 1 | 314 | 1.1e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055840 | MS.gene07815 | 0.800219 | 1.60E-48 | -1.69E-46 |
| MS.gene055840 | MS.gene29920 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene055840 | MS.gene29921 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene055840 | MS.gene31499 | 0.914766 | 1.30E-84 | -1.69E-46 |
| MS.gene055840 | MS.gene69780 | 0.819313 | 1.24E-52 | -1.69E-46 |
| MS.gene055840 | MS.gene77412 | 0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene055840 | MS.gene87673 | 0.803819 | 2.91E-49 | -1.69E-46 |
| MS.gene055840 | MS.gene90651 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene055840 | MS.gene99483 | 0.808693 | 2.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055840.t1 | MTR_2g090210 | 87.898 | 314 | 2 | 1 | 1 | 278 | 1 | 314 | 0.0 | 560 |
| MS.gene055840.t1 | MTR_4g044297 | 76.779 | 267 | 56 | 3 | 12 | 278 | 46 | 306 | 4.27e-140 | 397 |
| MS.gene055840.t1 | MTR_6g066280 | 42.812 | 313 | 117 | 6 | 11 | 272 | 22 | 323 | 7.68e-76 | 234 |
| MS.gene055840.t1 | MTR_1g077460 | 45.424 | 295 | 122 | 10 | 11 | 272 | 50 | 338 | 1.87e-68 | 216 |
| MS.gene055840.t1 | MTR_1g110070 | 39.649 | 285 | 141 | 7 | 15 | 272 | 126 | 406 | 2.92e-57 | 189 |
| MS.gene055840.t1 | MTR_6g082450 | 38.585 | 311 | 122 | 10 | 15 | 278 | 109 | 397 | 1.96e-55 | 184 |
| MS.gene055840.t1 | MTR_2g035080 | 38.699 | 292 | 132 | 10 | 15 | 272 | 115 | 393 | 1.41e-53 | 179 |
| MS.gene055840.t1 | MTR_4g120990 | 37.979 | 287 | 144 | 8 | 15 | 273 | 108 | 388 | 8.88e-53 | 177 |
| MS.gene055840.t1 | MTR_1g087830 | 33.460 | 263 | 120 | 5 | 15 | 273 | 89 | 300 | 1.77e-47 | 160 |
| MS.gene055840.t1 | MTR_1g087810 | 33.962 | 265 | 131 | 7 | 15 | 278 | 91 | 312 | 2.98e-40 | 142 |
| MS.gene055840.t1 | MTR_6g044130 | 44.094 | 127 | 52 | 6 | 150 | 258 | 1 | 126 | 3.70e-19 | 81.6 |
| MS.gene055840.t1 | MTR_6g077930 | 29.181 | 281 | 128 | 13 | 20 | 265 | 826 | 1070 | 9.17e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055840.t1 | AT4G03420 | 72.325 | 271 | 65 | 7 | 11 | 277 | 44 | 308 | 8.53e-123 | 353 |
| MS.gene055840.t1 | AT1G03610 | 67.033 | 273 | 70 | 5 | 11 | 277 | 48 | 306 | 3.16e-122 | 351 |
| MS.gene055840.t1 | AT4G28150 | 61.303 | 261 | 63 | 6 | 11 | 266 | 45 | 272 | 4.20e-99 | 292 |
| MS.gene055840.t1 | AT4G28150 | 61.303 | 261 | 63 | 6 | 11 | 266 | 43 | 270 | 4.43e-99 | 292 |
| MS.gene055840.t1 | AT1G03610 | 71.649 | 194 | 39 | 2 | 11 | 200 | 48 | 229 | 1.91e-92 | 273 |
| MS.gene055840.t1 | AT1G73210 | 50.178 | 281 | 114 | 7 | 12 | 274 | 37 | 309 | 2.22e-84 | 255 |
| MS.gene055840.t1 | AT1G73210 | 50.178 | 281 | 114 | 7 | 12 | 274 | 39 | 311 | 2.55e-84 | 255 |
| MS.gene055840.t1 | AT1G73210 | 50.178 | 281 | 114 | 7 | 12 | 274 | 39 | 311 | 2.55e-84 | 255 |
| MS.gene055840.t1 | AT1G17830 | 50.172 | 291 | 111 | 10 | 8 | 272 | 49 | 331 | 6.42e-79 | 242 |
| MS.gene055840.t1 | AT4G28150 | 61.728 | 162 | 42 | 4 | 11 | 167 | 45 | 191 | 1.01e-57 | 184 |
| MS.gene055840.t1 | AT1G15030 | 38.516 | 283 | 153 | 6 | 8 | 272 | 78 | 357 | 2.57e-54 | 180 |
| MS.gene055840.t1 | AT5G49220 | 38.745 | 271 | 147 | 6 | 13 | 272 | 139 | 401 | 4.26e-54 | 181 |
| MS.gene055840.t1 | AT4G16100 | 38.722 | 266 | 153 | 4 | 15 | 273 | 124 | 386 | 1.38e-52 | 176 |
| MS.gene055840.t1 | AT2G01260 | 39.929 | 283 | 126 | 11 | 15 | 272 | 103 | 366 | 4.02e-50 | 169 |
| MS.gene055840.t1 | AT1G15030 | 40.670 | 209 | 105 | 4 | 8 | 198 | 78 | 285 | 3.34e-41 | 144 |
| MS.gene055840.t1 | AT5G23380 | 37.308 | 260 | 141 | 6 | 16 | 273 | 53 | 292 | 1.04e-37 | 135 |
| MS.gene055840.t1 | AT2G01260 | 41.584 | 202 | 92 | 6 | 15 | 198 | 103 | 296 | 1.60e-36 | 132 |
| MS.gene055840.t1 | AT5G23380 | 38.172 | 186 | 96 | 3 | 15 | 198 | 52 | 220 | 9.84e-26 | 101 |
| MS.gene055840.t1 | AT5G23380 | 38.172 | 186 | 96 | 3 | 15 | 198 | 52 | 220 | 9.84e-26 | 101 |
| MS.gene055840.t1 | AT5G08360 | 35.714 | 182 | 88 | 7 | 95 | 274 | 12 | 166 | 3.53e-21 | 88.6 |
| MS.gene055840.t1 | AT5G08360 | 36.496 | 137 | 68 | 5 | 139 | 274 | 3 | 121 | 2.19e-17 | 77.4 |
Find 72 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACACCTTATCCATTAA+AGG | 0.190222 | 2.1:+11040190 | None:intergenic |
| CCCATGGGGATGTGATATAT+TGG | 0.259003 | 2.1:+11039392 | None:intergenic |
| ATTTCACCTTAGGTGATCTT+TGG | 0.262043 | 2.1:-11041124 | MS.gene055840:intron |
| ATATGGAAGAGTTCCTTTAA+TGG | 0.267910 | 2.1:-11040203 | MS.gene055840:CDS |
| ATAGTGACACAAGTCTTTCT+TGG | 0.321291 | 2.1:+11038396 | None:intergenic |
| AGCATCTCTTTGCCAGCATT+TGG | 0.333274 | 2.1:-11038479 | MS.gene055840:CDS |
| ACACTTTCATCTTCATTTCA+AGG | 0.353986 | 2.1:-11039326 | MS.gene055840:intron |
| CTGGCATTTGAATGATAGAT+TGG | 0.354804 | 2.1:-11040263 | MS.gene055840:CDS |
| TCTCCACTAGTTAAGGTGAT+TGG | 0.360355 | 2.1:+11041062 | None:intergenic |
| AAAATCATGATTTATAATAA+AGG | 0.361231 | 2.1:-11041403 | None:intergenic |
| TCATGACTTTAATTACTTCA+TGG | 0.367498 | 2.1:-11038330 | MS.gene055840:CDS |
| GGGTGGTAAAGAGAAGAAAA+AGG | 0.372996 | 2.1:-11038510 | MS.gene055840:CDS |
| ATTAAAGGAACTCTTCCATA+TGG | 0.392939 | 2.1:+11040205 | None:intergenic |
| CCATGGGGATGTGATATATT+GGG | 0.398329 | 2.1:+11039393 | None:intergenic |
| AAGTGTTTCTCCACTAGTTA+AGG | 0.398520 | 2.1:+11041055 | None:intergenic |
| TATGATGAATGGAGTGCTTA+TGG | 0.401502 | 2.1:-11041095 | MS.gene055840:CDS |
| AAGAGTTCCTTTAATGGATA+AGG | 0.405516 | 2.1:-11040197 | MS.gene055840:intron |
| TTTGGAAATGTTATGATGAA+TGG | 0.405932 | 2.1:-11041106 | MS.gene055840:CDS |
| TTTGAAAGATCAAATCCATA+TGG | 0.414270 | 2.1:-11040220 | MS.gene055840:CDS |
| CTCTTTGCCAGCATTTGGAT+TGG | 0.419974 | 2.1:-11038474 | MS.gene055840:CDS |
| AGAGTGAATGTGATAAATTA+TGG | 0.427860 | 2.1:-11040336 | MS.gene055840:CDS |
| GCAACAGCCATCCAACTTGC+TGG | 0.433093 | 2.1:+11039537 | None:intergenic |
| CATGACTTTAATTACTTCAT+GGG | 0.433693 | 2.1:-11038329 | MS.gene055840:CDS |
| TATTGAGTGTGGCAGATTCA+TGG | 0.445660 | 2.1:-11038376 | MS.gene055840:CDS |
| ATTCATGGTTGAAGCAACTA+AGG | 0.449277 | 2.1:-11038361 | MS.gene055840:CDS |
| TTCAGGGAAGAAACGGAATC+AGG | 0.449720 | 2.1:-11040403 | MS.gene055840:intron |
| ATCTTTGATTGTTCTTCCCA+TGG | 0.455135 | 2.1:+11039376 | None:intergenic |
| GGAGGGAATGTGTGGATTGG+AGG | 0.458294 | 2.1:-11038434 | MS.gene055840:CDS |
| CAAGGAGGGAATGTGTGGAT+TGG | 0.461911 | 2.1:-11038437 | MS.gene055840:CDS |
| GATATGAACAAGATTGTCTC+TGG | 0.489869 | 2.1:-11040282 | MS.gene055840:CDS |
| TGGGTATTTCAGGGAAGAAA+CGG | 0.490647 | 2.1:-11040410 | MS.gene055840:intron |
| TCTTTGATTGTTCTTCCCAT+GGG | 0.503871 | 2.1:+11039377 | None:intergenic |
| GGACCTAGATGATGATATTG+AGG | 0.510983 | 2.1:-11038531 | MS.gene055840:CDS |
| TGGCATTTGAATGATAGATT+GGG | 0.514072 | 2.1:-11040262 | MS.gene055840:CDS |
| CTTCTTAATGACATCAACCC+TGG | 0.520998 | 2.1:+11039573 | None:intergenic |
| CACCCTCAATATCATCATCT+AGG | 0.535416 | 2.1:+11038528 | None:intergenic |
| ATCTGAATTGCAGAAAGATA+AGG | 0.538537 | 2.1:+11041017 | None:intergenic |
| GATTGGAGGAAATCGTGGTC+GGG | 0.544061 | 2.1:-11038420 | MS.gene055840:CDS |
| TGGATCTTTCACCAGCAAGT+TGG | 0.547423 | 2.1:-11039548 | MS.gene055840:CDS |
| GAATGGAGTGCTTATGGAGC+TGG | 0.554473 | 2.1:-11041089 | MS.gene055840:CDS |
| ATGTGATAAATTATGGAGAT+GGG | 0.556071 | 2.1:-11040329 | MS.gene055840:CDS |
| CAAGTTGGATGGCTGTTGCT+TGG | 0.557839 | 2.1:-11039533 | MS.gene055840:intron |
| TACTTCATGGGCATTCGTCA+TGG | 0.562894 | 2.1:-11038317 | MS.gene055840:CDS |
| TTCTTAATGACATCAACCCT+GGG | 0.571402 | 2.1:+11039574 | None:intergenic |
| TCTTTCACCAGCAAGTTGGA+TGG | 0.574620 | 2.1:-11039544 | MS.gene055840:CDS |
| CCCAATATATCACATCCCCA+TGG | 0.578170 | 2.1:-11039393 | MS.gene055840:CDS |
| CTTTGATTGTTCTTCCCATG+GGG | 0.578586 | 2.1:+11039378 | None:intergenic |
| GTTGATGTCATTAAGAAGTG+TGG | 0.579821 | 2.1:-11039568 | MS.gene055840:CDS |
| AATGTGATAAATTATGGAGA+TGG | 0.580770 | 2.1:-11040330 | MS.gene055840:CDS |
| ATGAAAGTGTGTGGTAAGTG+AGG | 0.583785 | 2.1:+11039339 | None:intergenic |
| AATCAGGTGACTGTGAGACA+AGG | 0.587107 | 2.1:-11040387 | MS.gene055840:CDS |
| GACCTAGATGATGATATTGA+GGG | 0.593084 | 2.1:-11038530 | MS.gene055840:CDS |
| GATAAATTATGGAGATGGGA+TGG | 0.595846 | 2.1:-11040325 | MS.gene055840:CDS |
| TATGTTGCCAATCCAAATGC+TGG | 0.595862 | 2.1:+11038467 | None:intergenic |
| GAATTAGCTCAAAGATACCC+AGG | 0.596726 | 2.1:-11039591 | MS.gene055840:CDS |
| TTCATGGTTGAAGCAACTAA+GGG | 0.598042 | 2.1:-11038360 | MS.gene055840:CDS |
| GATGGAACTTCATCAGAAGA+AGG | 0.598419 | 2.1:-11040307 | MS.gene055840:CDS |
| GTTCCAATCACCTTAACTAG+TGG | 0.599506 | 2.1:-11041065 | MS.gene055840:CDS |
| CAACATACAAGATGCAAGGA+GGG | 0.610968 | 2.1:-11038451 | MS.gene055840:CDS |
| AGATGCAAGGAGGGAATGTG+TGG | 0.611060 | 2.1:-11038442 | MS.gene055840:CDS |
| GGATTGGAGGAAATCGTGGT+CGG | 0.614411 | 2.1:-11038421 | MS.gene055840:CDS |
| CCAATATATCACATCCCCAT+GGG | 0.620327 | 2.1:-11039392 | MS.gene055840:CDS |
| ATCAGGTGACTGTGAGACAA+GGG | 0.627184 | 2.1:-11040386 | MS.gene055840:CDS |
| TTGGCAACATACAAGATGCA+AGG | 0.637692 | 2.1:-11038455 | MS.gene055840:CDS |
| AATTAGCTCAAAGATACCCA+GGG | 0.669343 | 2.1:-11039590 | MS.gene055840:CDS |
| GGAACTTCATCAGAAGAAGG+AGG | 0.670655 | 2.1:-11040304 | MS.gene055840:CDS |
| CTAGATGATGATATTGAGGG+TGG | 0.674253 | 2.1:-11038527 | MS.gene055840:CDS |
| GTGTGGATTGGAGGAAATCG+TGG | 0.675124 | 2.1:-11038425 | MS.gene055840:CDS |
| GCAACATACAAGATGCAAGG+AGG | 0.683064 | 2.1:-11038452 | MS.gene055840:CDS |
| GTGGTAAGTGAGGAAGCATG+TGG | 0.683787 | 2.1:+11039349 | None:intergenic |
| GAAATGAAGATGAAAGTGTG+TGG | 0.729995 | 2.1:+11039330 | None:intergenic |
| ACTTGTGTCACTATTGAGTG+TGG | 0.731178 | 2.1:-11038387 | MS.gene055840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATAATTTTTAAATTA+CGG | - | chr2.1:11038977-11038996 | MS.gene055840:intron | 0.0% |
| !! | AATCATATCATATAAATAAA+TGG | - | chr2.1:11040021-11040040 | MS.gene055840:intron | 10.0% |
| !! | ATTAATTAATGAATTTGAAA+TGG | - | chr2.1:11039280-11039299 | MS.gene055840:intron | 10.0% |
| !! | GTAACAAATTTATTTAATTA+AGG | - | chr2.1:11040270-11040289 | MS.gene055840:CDS | 10.0% |
| !! | TTAAAAAAACATAAAATCTA+AGG | + | chr2.1:11038470-11038489 | None:intergenic | 10.0% |
| !!! | ATATTTTTGTTTTACTATAT+TGG | - | chr2.1:11039017-11039036 | MS.gene055840:intron | 10.0% |
| !!! | TATAAATTAACTTTTAATCA+AGG | + | chr2.1:11039689-11039708 | None:intergenic | 10.0% |
| !!! | TTAATTAATGAATTTGAAAT+GGG | - | chr2.1:11039281-11039300 | MS.gene055840:intron | 10.0% |
| !!! | TTTTTTATAGGTAAATATTT+TGG | - | chr2.1:11039571-11039590 | MS.gene055840:CDS | 10.0% |
| !! | AAAAAAAATTCAATTGAAGA+CGG | - | chr2.1:11040941-11040960 | MS.gene055840:intron | 15.0% |
| !! | AATAAAAATTTCATGAAAGT+TGG | + | chr2.1:11040772-11040791 | None:intergenic | 15.0% |
| !! | ATAAAAATTTCATGAAAGTT+GGG | + | chr2.1:11040771-11040790 | None:intergenic | 15.0% |
| !! | GTAATAAATTTGATTCATTA+TGG | - | chr2.1:11038737-11038756 | MS.gene055840:intron | 15.0% |
| !! | TAATTAATTAAAGTGTGAAT+AGG | + | chr2.1:11041095-11041114 | None:intergenic | 15.0% |
| !! | TGAATTCAATATACTAATAA+AGG | + | chr2.1:11040835-11040854 | None:intergenic | 15.0% |
| !! | TTGATAAGAAATAAAGATAA+AGG | + | chr2.1:11039898-11039917 | None:intergenic | 15.0% |
| !!! | AGTTAGAATTTATCTTTTTT+AGG | + | chr2.1:11039810-11039829 | None:intergenic | 15.0% |
| !!! | ATTTTTTGATGTTAAATTGA+GGG | - | chr2.1:11040426-11040445 | MS.gene055840:intron | 15.0% |
| !!! | GTTAGAATTTATCTTTTTTA+GGG | + | chr2.1:11039809-11039828 | None:intergenic | 15.0% |
| !!! | TTAGAATTTATCTTTTTTAG+GGG | + | chr2.1:11039808-11039827 | None:intergenic | 15.0% |
| !! | AATTATTATTATACAACCAG+TGG | + | chr2.1:11038968-11038987 | None:intergenic | 20.0% |
| !! | AATTGATTAGGGATATAAAT+TGG | - | chr2.1:11039736-11039755 | MS.gene055840:intron | 20.0% |
| !! | ATATTCTATTGTTGAATTTG+TGG | - | chr2.1:11040062-11040081 | MS.gene055840:intron | 20.0% |
| !! | ATTGATTAGGGATATAAATT+GGG | - | chr2.1:11039737-11039756 | MS.gene055840:intron | 20.0% |
| !! | GAATAATAAATAGTTGTGAT+TGG | - | chr2.1:11039243-11039262 | MS.gene055840:intron | 20.0% |
| !! | TAGTAAATTTGACGAAATTA+TGG | - | chr2.1:11039045-11039064 | MS.gene055840:intron | 20.0% |
| !! | TATTCACCAAATTATTGTTA+GGG | + | chr2.1:11039772-11039791 | None:intergenic | 20.0% |
| !! | TGGATTTCTTAAATTGATTA+GGG | - | chr2.1:11039725-11039744 | MS.gene055840:intron | 20.0% |
| !! | TTGGATTTCTTAAATTGATT+AGG | - | chr2.1:11039724-11039743 | MS.gene055840:intron | 20.0% |
| !!! | AATATCTCAGATTTTTGATT+TGG | - | chr2.1:11039191-11039210 | MS.gene055840:intron | 20.0% |
| !!! | ATTTTTAAATTACGGGTTTT+AGG | - | chr2.1:11038985-11039004 | MS.gene055840:intron | 20.0% |
| !!! | GAATATACTTTTTGTTTTTC+AGG | - | chr2.1:11040292-11040311 | MS.gene055840:CDS | 20.0% |
| !!! | GATTTTTTGATGTTAAATTG+AGG | - | chr2.1:11040425-11040444 | MS.gene055840:intron | 20.0% |
| !!! | TATATCTATGTTTTGTCTTT+TGG | - | chr2.1:11039705-11039724 | MS.gene055840:intron | 20.0% |
| !!! | TTCTTACTCTGATTTTTTAT+AGG | - | chr2.1:11039559-11039578 | MS.gene055840:CDS | 20.0% |
| ! | AAACATGATCTTTACATAGT+GGG | + | chr2.1:11038903-11038922 | None:intergenic | 25.0% |
| ! | AAAGTTGAATATTTCACCTT+AGG | - | chr2.1:11038576-11038595 | MS.gene055840:intron | 25.0% |
| ! | AAATCAGAGTAAGAAAACTA+AGG | + | chr2.1:11039554-11039573 | None:intergenic | 25.0% |
| ! | AATAGTTCCTACTTATTCAA+AGG | + | chr2.1:11039838-11039857 | None:intergenic | 25.0% |
| ! | AATGTGATAAATTATGGAGA+TGG | - | chr2.1:11039380-11039399 | MS.gene055840:CDS | 25.0% |
| ! | ACAATGGTAGAATTTAATGA+AGG | + | chr2.1:11038817-11038836 | None:intergenic | 25.0% |
| ! | ACCGTACAAAAGTAAAATAA+CGG | + | chr2.1:11040596-11040615 | None:intergenic | 25.0% |
| ! | AGAGTGAATGTGATAAATTA+TGG | - | chr2.1:11039374-11039393 | MS.gene055840:CDS | 25.0% |
| ! | ATAACTTAGCTATAGTATCA+TGG | - | chr2.1:11040451-11040470 | MS.gene055840:intron | 25.0% |
| ! | ATAAGAAGAACAAAAACCTT+AGG | + | chr2.1:11038400-11038419 | None:intergenic | 25.0% |
| ! | ATGTGATAAATTATGGAGAT+GGG | - | chr2.1:11039381-11039400 | MS.gene055840:CDS | 25.0% |
| ! | ATTATGGTTGAAAATTGGAT+TGG | - | chr2.1:11038753-11038772 | MS.gene055840:intron | 25.0% |
| ! | CATGACTTTAATTACTTCAT+GGG | - | chr2.1:11041381-11041400 | MS.gene055840:CDS | 25.0% |
| ! | CTATTACCCTAACAATAATT+TGG | - | chr2.1:11039763-11039782 | MS.gene055840:intron | 25.0% |
| ! | CTATTCACCAAATTATTGTT+AGG | + | chr2.1:11039773-11039792 | None:intergenic | 25.0% |
| ! | GATTCATTATGGTTGAAAAT+TGG | - | chr2.1:11038748-11038767 | MS.gene055840:intron | 25.0% |
| ! | TAAACATGATCTTTACATAG+TGG | + | chr2.1:11038904-11038923 | None:intergenic | 25.0% |
| ! | TCATGACTTTAATTACTTCA+TGG | - | chr2.1:11041380-11041399 | MS.gene055840:CDS | 25.0% |
| ! | TTTGAAAGATCAAATCCATA+TGG | - | chr2.1:11039490-11039509 | MS.gene055840:intron | 25.0% |
| ! | TTTGGAAATGTTATGATGAA+TGG | - | chr2.1:11038604-11038623 | MS.gene055840:intron | 25.0% |
| ! | TTTGGTAGGATAATTAACAT+AGG | - | chr2.1:11039209-11039228 | MS.gene055840:intron | 25.0% |
| !! | AAGGTGTTTGTTTATGTATA+GGG | - | chr2.1:11041154-11041173 | MS.gene055840:intron | 25.0% |
| !! | AATTTGAAATGGGTATTTCA+GGG | - | chr2.1:11039291-11039310 | MS.gene055840:intron | 25.0% |
| !!! | AAAGGTGTTTGTTTATGTAT+AGG | - | chr2.1:11041153-11041172 | MS.gene055840:intron | 25.0% |
| !!! | AATTCAGATTTTTTGTACCA+TGG | - | chr2.1:11040849-11040868 | MS.gene055840:intron | 25.0% |
| !!! | ACCGTTATTTTACTTTTGTA+CGG | - | chr2.1:11040592-11040611 | MS.gene055840:intron | 25.0% |
| !!! | GATTTTGTTACTGTTTCTTA+GGG | - | chr2.1:11038932-11038951 | MS.gene055840:intron | 25.0% |
| !!! | TGATTTTGTTACTGTTTCTT+AGG | - | chr2.1:11038931-11038950 | MS.gene055840:intron | 25.0% |
| AACATGATCTTTACATAGTG+GGG | + | chr2.1:11038902-11038921 | None:intergenic | 30.0% | |
| AATAAGAAGTAGCTAAGAGT+AGG | + | chr2.1:11040226-11040245 | None:intergenic | 30.0% | |
| ACACCTTTCTTTAGTTAGTA+TGG | + | chr2.1:11041141-11041160 | None:intergenic | 30.0% | |
| ACACTTTCATCTTCATTTCA+AGG | - | chr2.1:11040384-11040403 | MS.gene055840:CDS | 30.0% | |
| AGAAATTGAGATTGAACAAC+CGG | + | chr2.1:11038376-11038395 | None:intergenic | 30.0% | |
| ATATGGAAGAGTTCCTTTAA+TGG | - | chr2.1:11039507-11039526 | MS.gene055840:intron | 30.0% | |
| ATCTGAATTGCAGAAAGATA+AGG | + | chr2.1:11038696-11038715 | None:intergenic | 30.0% | |
| ATTAAAGGAACTCTTCCATA+TGG | + | chr2.1:11039508-11039527 | None:intergenic | 30.0% | |
| CACCTTTCTTTAGTTAGTAT+GGG | + | chr2.1:11041140-11041159 | None:intergenic | 30.0% | |
| CTATTGACCTTTGAATAAGT+AGG | - | chr2.1:11039828-11039847 | MS.gene055840:intron | 30.0% | |
| GTAAAGAGAAGAAAAAGGAA+GGG | - | chr2.1:11041205-11041224 | MS.gene055840:intron | 30.0% | |
| TAAAGAGAAGAAAAAGGAAG+GGG | - | chr2.1:11041206-11041225 | MS.gene055840:intron | 30.0% | |
| TCAATCTCAATTTCTACCTA+AGG | - | chr2.1:11038381-11038400 | MS.gene055840:CDS | 30.0% | |
| TGATGAATTTGTCAGAATCA+CGG | + | chr2.1:11039131-11039150 | None:intergenic | 30.0% | |
| TGGCATTTGAATGATAGATT+GGG | - | chr2.1:11039448-11039467 | MS.gene055840:intron | 30.0% | |
| TGTTGAATTTGTGGCATAAA+TGG | - | chr2.1:11040071-11040090 | MS.gene055840:intron | 30.0% | |
| TGTTTGTTTATGTATAGGGA+TGG | - | chr2.1:11041158-11041177 | MS.gene055840:intron | 30.0% | |
| TTACACACCTTATCCATTAA+AGG | + | chr2.1:11039523-11039542 | None:intergenic | 30.0% | |
| TTCCATCTTGATAAGTTTAG+AGG | + | chr2.1:11039863-11039882 | None:intergenic | 30.0% | |
| TTCCCATACTAACTAAAGAA+AGG | - | chr2.1:11041135-11041154 | MS.gene055840:intron | 30.0% | |
| TTCCTCTAAACTTATCAAGA+TGG | - | chr2.1:11039858-11039877 | MS.gene055840:intron | 30.0% | |
| ! | AAGAGTTCCTTTAATGGATA+AGG | - | chr2.1:11039513-11039532 | MS.gene055840:intron | 30.0% |
| ! | GAATTTGAAATGGGTATTTC+AGG | - | chr2.1:11039290-11039309 | MS.gene055840:intron | 30.0% |
| ! | TTTTAGTCATATGATGTGAG+AGG | - | chr2.1:11041022-11041041 | MS.gene055840:CDS | 30.0% |
| ! | TTTTCACTAGCAATAGTTTC+AGG | - | chr2.1:11038715-11038734 | MS.gene055840:intron | 30.0% |
| !! | ATCTAGTTCTATAGTATCGT+AGG | - | chr2.1:11040663-11040682 | MS.gene055840:intron | 30.0% |
| !! | TAACTTGGATGGATTATCTA+TGG | - | chr2.1:11039967-11039986 | MS.gene055840:intron | 30.0% |
| !!! | TCTCAGATTTTTGATTTGGT+AGG | - | chr2.1:11039195-11039214 | MS.gene055840:intron | 30.0% |
| !!! | TTTAAATTACGGGTTTTAGG+TGG | - | chr2.1:11038988-11039007 | MS.gene055840:intron | 30.0% |
| AACACCTATGAAAGCAACAA+TGG | + | chr2.1:11038833-11038852 | None:intergenic | 35.0% | |
| AAGTGTTTCTCCACTAGTTA+AGG | + | chr2.1:11038658-11038677 | None:intergenic | 35.0% | |
| AATTAGCTCAAAGATACCCA+GGG | - | chr2.1:11040120-11040139 | MS.gene055840:intron | 35.0% | |
| ACAAAATGTCCTATCACCTA+TGG | + | chr2.1:11038871-11038890 | None:intergenic | 35.0% | |
| ACAACTTTGTCTAACTTGGA+TGG | - | chr2.1:11039956-11039975 | MS.gene055840:intron | 35.0% | |
| ACACACTTGGATACATAACT+AGG | + | chr2.1:11041061-11041080 | None:intergenic | 35.0% | |
| ACATTTCCAAAGATCACCTA+AGG | + | chr2.1:11038595-11038614 | None:intergenic | 35.0% | |
| ACCTATGGTTAGACATGTTT+GGG | + | chr2.1:11038856-11038875 | None:intergenic | 35.0% | |
| AGATCAAACTGTGTGAAAAC+TGG | - | chr2.1:11040555-11040574 | MS.gene055840:intron | 35.0% | |
| ATAGTGACACAAGTCTTTCT+TGG | + | chr2.1:11041317-11041336 | None:intergenic | 35.0% | |
| ATCCAAGTTAGACAAAGTTG+TGG | + | chr2.1:11039957-11039976 | None:intergenic | 35.0% | |
| ATCTTTGATTGTTCTTCCCA+TGG | + | chr2.1:11040337-11040356 | None:intergenic | 35.0% | |
| ATTCATGGTTGAAGCAACTA+AGG | - | chr2.1:11041349-11041368 | MS.gene055840:intron | 35.0% | |
| ATTTCACCTTAGGTGATCTT+TGG | - | chr2.1:11038586-11038605 | MS.gene055840:intron | 35.0% | |
| CATAGACATGTCTATGACAT+TGG | - | chr2.1:11040796-11040815 | MS.gene055840:intron | 35.0% | |
| CATGAAAGTTGGGATTTGAA+AGG | + | chr2.1:11040761-11040780 | None:intergenic | 35.0% | |
| CTGGCATTTGAATGATAGAT+TGG | - | chr2.1:11039447-11039466 | MS.gene055840:intron | 35.0% | |
| GACCTAGATGATGATATTGA+GGG | - | chr2.1:11041180-11041199 | MS.gene055840:intron | 35.0% | |
| GATAAATTATGGAGATGGGA+TGG | - | chr2.1:11039385-11039404 | MS.gene055840:CDS | 35.0% | |
| GATATGAACAAGATTGTCTC+TGG | - | chr2.1:11039428-11039447 | MS.gene055840:intron | 35.0% | |
| GGCAACAAACAATAGAAAGT+AGG | + | chr2.1:11039668-11039687 | None:intergenic | 35.0% | |
| GGTAAAGAGAAGAAAAAGGA+AGG | - | chr2.1:11041204-11041223 | MS.gene055840:intron | 35.0% | |
| GTTGATGTCATTAAGAAGTG+TGG | - | chr2.1:11040142-11040161 | MS.gene055840:intron | 35.0% | |
| TCAGCCGTTTGATCTTTAAT+CGG | - | chr2.1:11040526-11040545 | MS.gene055840:intron | 35.0% | |
| TCTTTGATTGTTCTTCCCAT+GGG | + | chr2.1:11040336-11040355 | None:intergenic | 35.0% | |
| TTACAAACCTGAACGGTTTA+TGG | - | chr2.1:11038535-11038554 | MS.gene055840:CDS | 35.0% | |
| TTCATGGTTGAAGCAACTAA+GGG | - | chr2.1:11041350-11041369 | MS.gene055840:intron | 35.0% | |
| TTCCACAACTTTGTCTAACT+TGG | - | chr2.1:11039952-11039971 | MS.gene055840:intron | 35.0% | |
| TTCTTAATGACATCAACCCT+GGG | + | chr2.1:11040139-11040158 | None:intergenic | 35.0% | |
| TTTCGAATTTCGATGTTCCT+CGG | - | chr2.1:11039603-11039622 | MS.gene055840:intron | 35.0% | |
| ! | GAAATGAAGATGAAAGTGTG+TGG | + | chr2.1:11040383-11040402 | None:intergenic | 35.0% |
| ! | GTCACCGATTAAAGATCAAA+CGG | + | chr2.1:11040533-11040552 | None:intergenic | 35.0% |
| ! | TAGTTCTATAGTATCGTAGG+TGG | - | chr2.1:11040666-11040685 | MS.gene055840:intron | 35.0% |
| ! | TATGATGAATGGAGTGCTTA+TGG | - | chr2.1:11038615-11038634 | MS.gene055840:intron | 35.0% |
| ! | TCTGAGATTACAAACCTGAA+CGG | - | chr2.1:11038528-11038547 | MS.gene055840:CDS | 35.0% |
| !! | TCTACCATTGTTGCTTTCAT+AGG | - | chr2.1:11038826-11038845 | MS.gene055840:intron | 35.0% |
| AGACATGATCTCAACTCGTT+TGG | + | chr2.1:11040921-11040940 | None:intergenic | 40.0% | |
| CAACATACAAGATGCAAGGA+GGG | - | chr2.1:11041259-11041278 | MS.gene055840:intron | 40.0% | |
| CACCCTCAATATCATCATCT+AGG | + | chr2.1:11041185-11041204 | None:intergenic | 40.0% | |
| CACCTATGGTTAGACATGTT+TGG | + | chr2.1:11038857-11038876 | None:intergenic | 40.0% | |
| CATGTCTAACCATAGGTGAT+AGG | - | chr2.1:11038859-11038878 | MS.gene055840:intron | 40.0% | |
| CCAATATATCACATCCCCAT+GGG | - | chr2.1:11040318-11040337 | MS.gene055840:CDS | 40.0% | |
| CCATGGGGATGTGATATATT+GGG | + | chr2.1:11040320-11040339 | None:intergenic | 40.0% | |
| CTAGATGATGATATTGAGGG+TGG | - | chr2.1:11041183-11041202 | MS.gene055840:intron | 40.0% | |
| CTTCTTAATGACATCAACCC+TGG | + | chr2.1:11040140-11040159 | None:intergenic | 40.0% | |
| CTTTGATTGTTCTTCCCATG+GGG | + | chr2.1:11040335-11040354 | None:intergenic | 40.0% | |
| GAAGTAGCTAAGAGTAGGAT+AGG | + | chr2.1:11040221-11040240 | None:intergenic | 40.0% | |
| GAATTAGCTCAAAGATACCC+AGG | - | chr2.1:11040119-11040138 | MS.gene055840:intron | 40.0% | |
| GATGGAACTTCATCAGAAGA+AGG | - | chr2.1:11039403-11039422 | MS.gene055840:intron | 40.0% | |
| GGACCTAGATGATGATATTG+AGG | - | chr2.1:11041179-11041198 | MS.gene055840:intron | 40.0% | |
| GGGTGGTAAAGAGAAGAAAA+AGG | - | chr2.1:11041200-11041219 | MS.gene055840:intron | 40.0% | |
| GGTAATCAATGTGACACACT+TGG | + | chr2.1:11041074-11041093 | None:intergenic | 40.0% | |
| GTTCCAATCACCTTAACTAG+TGG | - | chr2.1:11038645-11038664 | MS.gene055840:intron | 40.0% | |
| TAGCTATAGTATCATGGACC+TGG | - | chr2.1:11040457-11040476 | MS.gene055840:intron | 40.0% | |
| TATGTTGCCAATCCAAATGC+TGG | + | chr2.1:11041246-11041265 | None:intergenic | 40.0% | |
| TATTGAGTGTGGCAGATTCA+TGG | - | chr2.1:11041334-11041353 | MS.gene055840:intron | 40.0% | |
| TCCCAAACATGTCTAACCAT+AGG | - | chr2.1:11038852-11038871 | MS.gene055840:intron | 40.0% | |
| TCTCCACTAGTTAAGGTGAT+TGG | + | chr2.1:11038651-11038670 | None:intergenic | 40.0% | |
| TGGGTATTTCAGGGAAGAAA+CGG | - | chr2.1:11039300-11039319 | MS.gene055840:intron | 40.0% | |
| TTGGCAACATACAAGATGCA+AGG | - | chr2.1:11041255-11041274 | MS.gene055840:intron | 40.0% | |
| TTTCGTTCGATGTACTACAC+CGG | - | chr2.1:11038354-11038373 | MS.gene055840:CDS | 40.0% | |
| ! | ACTTGTGTCACTATTGAGTG+TGG | - | chr2.1:11041323-11041342 | MS.gene055840:intron | 40.0% |
| ! | ATGAAAGTGTGTGGTAAGTG+AGG | + | chr2.1:11040374-11040393 | None:intergenic | 40.0% |
| ! | TTAGGGTCAAACTTTTCCAC+TGG | - | chr2.1:11038949-11038968 | MS.gene055840:intron | 40.0% |
| !! | TCAACTTTTTCTCTCTCCCA+TGG | + | chr2.1:11038564-11038583 | None:intergenic | 40.0% |
| !!! | AAATTACGGGTTTTAGGTGG+TGG | - | chr2.1:11038991-11039010 | MS.gene055840:intron | 40.0% |
| !!! | AATTACGGGTTTTAGGTGGT+GGG | - | chr2.1:11038992-11039011 | MS.gene055840:intron | 40.0% |
| AATCAGGTGACTGTGAGACA+AGG | - | chr2.1:11039323-11039342 | MS.gene055840:intron | 45.0% | |
| AGCATCTCTTTGCCAGCATT+TGG | - | chr2.1:11041231-11041250 | MS.gene055840:intron | 45.0% | |
| ATCAGGTGACTGTGAGACAA+GGG | - | chr2.1:11039324-11039343 | MS.gene055840:intron | 45.0% | |
| ATCGAGCTAGAAAGACACCA+TGG | + | chr2.1:11040869-11040888 | None:intergenic | 45.0% | |
| ATGGTTGCCATAAACCGTTC+AGG | + | chr2.1:11038545-11038564 | None:intergenic | 45.0% | |
| ATGTGAGAGGATCCTAACTC+GGG | - | chr2.1:11041035-11041054 | MS.gene055840:CDS | 45.0% | |
| CCCAATATATCACATCCCCA+TGG | - | chr2.1:11040317-11040336 | MS.gene055840:CDS | 45.0% | |
| CCCATGGGGATGTGATATAT+TGG | + | chr2.1:11040321-11040340 | None:intergenic | 45.0% | |
| CTATAGTATCGTAGGTGGCT+AGG | - | chr2.1:11040671-11040690 | MS.gene055840:intron | 45.0% | |
| CTCTTTGCCAGCATTTGGAT+TGG | - | chr2.1:11041236-11041255 | MS.gene055840:intron | 45.0% | |
| GAACGGTTTATGGCAACCAT+GGG | - | chr2.1:11038545-11038564 | MS.gene055840:intron | 45.0% | |
| GATGTGAGAGGATCCTAACT+CGG | - | chr2.1:11041034-11041053 | MS.gene055840:CDS | 45.0% | |
| GCAACATACAAGATGCAAGG+AGG | - | chr2.1:11041258-11041277 | MS.gene055840:intron | 45.0% | |
| GGAACTTCATCAGAAGAAGG+AGG | - | chr2.1:11039406-11039425 | MS.gene055840:intron | 45.0% | |
| TACATAACTAGGCCCGAGTT+AGG | + | chr2.1:11041050-11041069 | None:intergenic | 45.0% | |
| TACTGCGTGTAATTGCGTGA+AGG | + | chr2.1:11040499-11040518 | None:intergenic | 45.0% | |
| TACTTCATGGGCATTCGTCA+TGG | - | chr2.1:11041393-11041412 | MS.gene055840:CDS | 45.0% | |
| TGAACGGTTTATGGCAACCA+TGG | - | chr2.1:11038544-11038563 | MS.gene055840:intron | 45.0% | |
| TGGATCTTTCACCAGCAAGT+TGG | - | chr2.1:11040162-11040181 | MS.gene055840:intron | 45.0% | |
| TTCAGGGAAGAAACGGAATC+AGG | - | chr2.1:11039307-11039326 | MS.gene055840:intron | 45.0% | |
| ! | TCTTTCACCAGCAAGTTGGA+TGG | - | chr2.1:11040166-11040185 | MS.gene055840:intron | 45.0% |
| !!! | AATAATAATTTTTAAATTAC+GGG | - | chr2.1:11038978-11038997 | MS.gene055840:intron | 5.0% |
| AGATGCAAGGAGGGAATGTG+TGG | - | chr2.1:11041268-11041287 | MS.gene055840:intron | 50.0% | |
| CAAGGAGGGAATGTGTGGAT+TGG | - | chr2.1:11041273-11041292 | MS.gene055840:intron | 50.0% | |
| CTGCGTGAAGCAATTACAGC+AGG | - | chr2.1:11040638-11040657 | MS.gene055840:intron | 50.0% | |
| GATTGGAGGAAATCGTGGTC+GGG | - | chr2.1:11041290-11041309 | MS.gene055840:intron | 50.0% | |
| GGAGTTACAGCAGGAAATCC+AGG | + | chr2.1:11040478-11040497 | None:intergenic | 50.0% | |
| GGATTGGAGGAAATCGTGGT+CGG | - | chr2.1:11041289-11041308 | MS.gene055840:intron | 50.0% | |
| TTGCGTGAAGGAGTTACAGC+AGG | + | chr2.1:11040487-11040506 | None:intergenic | 50.0% | |
| ! | CAAGTTGGATGGCTGTTGCT+TGG | - | chr2.1:11040177-11040196 | MS.gene055840:intron | 50.0% |
| ! | GAATGGAGTGCTTATGGAGC+TGG | - | chr2.1:11038621-11038640 | MS.gene055840:intron | 50.0% |
| ! | GTGGTAAGTGAGGAAGCATG+TGG | + | chr2.1:11040364-11040383 | None:intergenic | 50.0% |
| !! | GTGTGGATTGGAGGAAATCG+TGG | - | chr2.1:11041285-11041304 | MS.gene055840:intron | 50.0% |
| GCAACAGCCATCCAACTTGC+TGG | + | chr2.1:11040176-11040195 | None:intergenic | 55.0% | |
| TCAGCTCAGATGATGAGCCG+AGG | + | chr2.1:11039623-11039642 | None:intergenic | 55.0% | |
| !! | GGAGGGAATGTGTGGATTGG+AGG | - | chr2.1:11041276-11041295 | MS.gene055840:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 11038313 | 11041419 | 11038313 | ID=MS.gene055840 |
| chr2.1 | mRNA | 11038313 | 11041419 | 11038313 | ID=MS.gene055840.t1;Parent=MS.gene055840 |
| chr2.1 | exon | 11041368 | 11041419 | 11041368 | ID=MS.gene055840.t1.exon1;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11041368 | 11041419 | 11041368 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| chr2.1 | exon | 11040996 | 11041134 | 11040996 | ID=MS.gene055840.t1.exon2;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11040996 | 11041134 | 11040996 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| chr2.1 | exon | 11040198 | 11040420 | 11040198 | ID=MS.gene055840.t1.exon3;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11040198 | 11040420 | 11040198 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| chr2.1 | exon | 11039534 | 11039619 | 11039534 | ID=MS.gene055840.t1.exon4;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11039534 | 11039619 | 11039534 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| chr2.1 | exon | 11039327 | 11039418 | 11039327 | ID=MS.gene055840.t1.exon5;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11039327 | 11039418 | 11039327 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| chr2.1 | exon | 11038313 | 11038557 | 11038313 | ID=MS.gene055840.t1.exon6;Parent=MS.gene055840.t1 |
| chr2.1 | CDS | 11038313 | 11038557 | 11038313 | ID=cds.MS.gene055840.t1;Parent=MS.gene055840.t1 |
| Gene Sequence |
| Protein sequence |
