AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31508.t1 MTR_2g090155 96.886 289 9 0 1 289 1 289 0.0 577
MS.gene31508.t1 MTR_2g090155 96.886 289 9 0 1 289 1 289 0.0 577
MS.gene31508.t1 MTR_2g090155 95.156 289 9 1 1 289 1 284 0.0 558
MS.gene31508.t1 MTR_2g080040 76.126 222 53 0 68 289 122 343 2.47e-131 377
MS.gene31508.t1 MTR_1g106775 23.256 172 131 1 118 288 76 247 2.15e-13 68.9
MS.gene31508.t1 MTR_2g090170 68.000 50 15 1 241 289 20 69 2.83e-13 64.3
MS.gene31508.t1 MTR_6g038540 25.517 145 108 0 126 270 56 200 3.37e-13 68.2
MS.gene31508.t1 MTR_1g075540 26.190 168 120 2 123 288 9 174 1.03e-12 65.9
MS.gene31508.t1 MTR_1g075540 26.380 163 116 2 123 283 9 169 4.46e-12 63.5
MS.gene31508.t1 MTR_8g103490 25.389 193 116 3 123 288 8 199 5.65e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31508.t1 AT4G03410 68.750 288 81 2 5 289 13 294 4.45e-148 418
MS.gene31508.t1 AT4G03410 68.750 288 81 2 5 289 13 294 7.03e-148 419
MS.gene31508.t1 AT1G52870 58.333 336 90 5 2 289 3 336 3.37e-134 384
MS.gene31508.t1 AT1G52870 52.751 309 92 6 2 262 3 305 3.62e-105 308
MS.gene31508.t1 AT4G33905 27.044 159 116 0 126 284 86 244 3.91e-15 73.9
MS.gene31508.t1 AT2G14860 26.380 163 120 0 126 288 77 239 2.37e-13 68.9
MS.gene31508.t1 AT5G43140 23.313 163 125 0 126 288 82 244 6.74e-13 67.4

Find 74 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCTACTTTGTGGTTT+TGG 0.095576 2.4:-10915474 MS.gene31508:CDS
CTGTGGAACAAAGGCTTCTT+TGG 0.173165 2.4:-10914845 MS.gene31508:CDS
CACAGGCAGGCTGGAAGCTT+TGG 0.250296 2.4:-10914902 MS.gene31508:intron
TTCGCCCATCTGATTACTTA+TGG 0.254055 2.4:-10914876 MS.gene31508:CDS
GACTCTTTGGATAACATCTA+TGG 0.262207 2.4:-10915437 MS.gene31508:CDS
TTTGTTGCGTTTCGACTCTT+TGG 0.263346 2.4:-10915450 MS.gene31508:CDS
GCTGCAATCGTTCTCGGATT+TGG 0.274226 2.4:-10916730 MS.gene31508:CDS
AAACTGTGTGGTCAGCTATT+TGG 0.279478 2.4:-10915499 MS.gene31508:CDS
TGGACTGTATTGAGCTCATC+TGG 0.292811 2.4:-10914821 MS.gene31508:CDS
GAAAGGAGGTAGGGAGATGT+GGG 0.356126 2.4:+10916927 None:intergenic
TCACCATTGATCATGATTAC+TGG 0.368079 2.4:-10916684 MS.gene31508:CDS
TGTGGAACAAAGGCTTCTTT+GGG 0.369696 2.4:-10914844 MS.gene31508:CDS
AGAAAGGAGGTAGGGAGATG+TGG 0.370599 2.4:+10916926 None:intergenic
ATGATCAATGGTGAGCAATT+TGG 0.384077 2.4:+10916693 None:intergenic
CTTGTTGGGTTTACTCTCCA+TGG 0.385473 2.4:-10915699 MS.gene31508:CDS
CTATTTAGATCAGGTCTTGT+TGG 0.390942 2.4:-10915714 MS.gene31508:CDS
AGTGGAGTTGTCTACTCAAT+TGG 0.403111 2.4:-10915884 MS.gene31508:CDS
TTGGAACACCATCTACTTTG+TGG 0.406483 2.4:-10915480 MS.gene31508:CDS
TATTTAGATCAGGTCTTGTT+GGG 0.406785 2.4:-10915713 MS.gene31508:CDS
TGGTCAAAAGCAACTTTAGC+AGG 0.412786 2.4:+10915521 None:intergenic
ATCAATGCTGCAATCGTTCT+CGG 0.414955 2.4:-10916736 MS.gene31508:CDS
GAGAACGATTGCAGCATTGA+TGG 0.419624 2.4:+10916738 None:intergenic
AAATAGCTGACCACACAGTT+TGG 0.423298 2.4:+10915501 None:intergenic
CAGGGACAACCCACCATTGT+TGG 0.429883 2.4:+10915540 None:intergenic
TTGTCTACTCAATTGGAGAT+TGG 0.442062 2.4:-10915877 MS.gene31508:CDS
TAGGCAATCCAATTGTGTTC+AGG 0.443916 2.4:+10915953 None:intergenic
TGCAGCATTGATGGCACGTC+CGG 0.446757 2.4:+10916747 None:intergenic
GAGATGTGGGGCTTTGAGAA+GGG 0.453423 2.4:+10916940 None:intergenic
ACCCAAAACCACAAAGTAGA+TGG 0.457211 2.4:+10915472 None:intergenic
AGAGGATCGTGAAGCAGCTT+CGG 0.458460 2.4:-10916857 MS.gene31508:CDS
CAAAATATATAGTGCTATGA+AGG 0.459856 2.4:-10915768 MS.gene31508:intron
TTTGGGAAGAGAAAGGAGGT+AGG 0.471467 2.4:+10916917 None:intergenic
GGATTCTTCTTCGCCTTCCA+AGG 0.473472 2.4:-10916806 MS.gene31508:CDS
GGAGATGTGGGGCTTTGAGA+AGG 0.481259 2.4:+10916939 None:intergenic
AATATGTGCCTGAACACAAT+TGG 0.484652 2.4:-10915961 MS.gene31508:CDS
AATTGGAGATTGGATTGCTC+AGG 0.486533 2.4:-10915867 MS.gene31508:intron
TGCTTTCAGAGATTGCTCAT+AGG 0.490513 2.4:+10915934 None:intergenic
TTAGCTAAAATGGCAATAAG+TGG 0.494093 2.4:-10915902 MS.gene31508:CDS
TTGGGAAGAGAAAGGAGGTA+GGG 0.500264 2.4:+10916918 None:intergenic
AATATGCTTCACAGGCAGGC+TGG 0.502341 2.4:-10914911 MS.gene31508:intron
TACTTATGGTGTGGTTCCTG+TGG 0.517838 2.4:-10914862 MS.gene31508:CDS
GGGGCTTTGAGAAGGGAAGG+AGG 0.527578 2.4:+10916947 None:intergenic
CGAGCGCGGCTATTTAGATC+AGG 0.532514 2.4:-10915723 MS.gene31508:CDS
CAAAGAAGCCTTTGTTCCAC+AGG 0.539036 2.4:+10914846 None:intergenic
TTGGTTTGGGAAGAGAAAGG+AGG 0.539173 2.4:+10916913 None:intergenic
TGTGGGGCTTTGAGAAGGGA+AGG 0.541270 2.4:+10916944 None:intergenic
GGAACAAAGGCTTCTTTGGG+TGG 0.543292 2.4:-10914841 MS.gene31508:CDS
ATAAGTTCTTACAGTGAGCA+TGG 0.545807 2.4:+10915391 None:intergenic
AGCAACCTCTGTAATACCCT+TGG 0.551215 2.4:+10916789 None:intergenic
ATGCCAGTAATCATGATCAA+TGG 0.555376 2.4:+10916681 None:intergenic
CCACACCATAAGTAATCAGA+TGG 0.560187 2.4:+10914871 None:intergenic
GGACTGTATTGAGCTCATCT+GGG 0.562988 2.4:-10914820 MS.gene31508:CDS
GATTCTTCTTCGCCTTCCAA+GGG 0.565561 2.4:-10916805 MS.gene31508:CDS
CCATCTGATTACTTATGGTG+TGG 0.569311 2.4:-10914871 MS.gene31508:CDS
AATAGTGAGAAAGAGATCCA+TGG 0.572551 2.4:+10915682 None:intergenic
ACAACCCACCATTGTTGGAA+AGG 0.581867 2.4:+10915545 None:intergenic
TAAGTTCTTACAGTGAGCAT+GGG 0.590336 2.4:+10915392 None:intergenic
GGGCTTTGAGAAGGGAAGGA+GGG 0.590501 2.4:+10916948 None:intergenic
GGTCAAAAGCAACTTTAGCA+GGG 0.608265 2.4:+10915522 None:intergenic
TAAGTAATCAGATGGGCGAA+AGG 0.609767 2.4:+10914879 None:intergenic
CATAATCAGCTCCGTTACAG+AGG 0.615880 2.4:-10916875 MS.gene31508:CDS
TGCTTCACGATCCTCTGTAA+CGG 0.624438 2.4:+10916864 None:intergenic
CAATAATCACCTCACACAGT+TGG 0.632374 2.4:+10915655 None:intergenic
AATAGAAGAAGCAACTGACA+TGG 0.637698 2.4:+10916975 None:intergenic
GCCTTCCAAGGGTATTACAG+AGG 0.638135 2.4:-10916794 MS.gene31508:CDS
ACCTCTGTAATACCCTTGGA+AGG 0.643738 2.4:+10916793 None:intergenic
GTGTGGTTCCTGTGGAACAA+AGG 0.645875 2.4:-10914854 MS.gene31508:CDS
AAAAGACAGAAAAGTCCTTG+AGG 0.646563 2.4:-10916827 MS.gene31508:CDS
CATTGATGGCACGTCCGGTG+AGG 0.652622 2.4:+10916752 None:intergenic
CTATTACTACCAACTGTGTG+AGG 0.652660 2.4:-10915664 MS.gene31508:intron
GCTGACACTGATATCCTCAC+CGG 0.657443 2.4:-10916766 MS.gene31508:CDS
AAGGCGAAGAAGAATCCTCA+AGG 0.659435 2.4:+10916812 None:intergenic
AAAGGAGGTAGGGAGATGTG+GGG 0.663791 2.4:+10916928 None:intergenic
CACACCATAAGTAATCAGAT+GGG 0.679652 2.4:+10914872 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAAGAAACATAGTT+TGG + chr2.4:10915544-10915563 None:intergenic 15.0%
!! ATAGAAAAAGAAGCAAAATT+TGG + chr2.4:10915146-10915165 None:intergenic 20.0%
!! GATAAAAAATCAATTCAAAC+AGG + chr2.4:10916427-10916446 None:intergenic 20.0%
!! TGTTACAAAAATAAAGCAAA+AGG - chr2.4:10916690-10916709 MS.gene31508:CDS 20.0%
!!! AAGAACTTATTTGTTTCTTA+GGG - chr2.4:10916401-10916420 MS.gene31508:intron 20.0%
!!! TAAGAACTTATTTGTTTCTT+AGG - chr2.4:10916400-10916419 MS.gene31508:intron 20.0%
!!! TCAATAATAAGCTAGTTTAT+TGG + chr2.4:10915220-10915239 None:intergenic 20.0%
!!! TGAATTGATTTTTTATCTAC+TGG - chr2.4:10916430-10916449 MS.gene31508:intron 20.0%
!!! TGTATTTTCTGTATTGTAAA+TGG - chr2.4:10915734-10915753 MS.gene31508:CDS 20.0%
! AAGAAGTTGAAAACTGATTA+GGG - chr2.4:10915757-10915776 MS.gene31508:CDS 25.0%
! AGAAAATTGATGAAAGAAAG+GGG - chr2.4:10916713-10916732 MS.gene31508:CDS 25.0%
! AGTTTGGTATAGATAGAATA+TGG + chr2.4:10915528-10915547 None:intergenic 25.0%
! ATGTATTATAGTAAAGCAGA+CGG - chr2.4:10915687-10915706 MS.gene31508:CDS 25.0%
! ATTATTGTACATCTTTGGTT+TGG - chr2.4:10916140-10916159 MS.gene31508:intron 25.0%
! CAAAATATATAGTGCTATGA+AGG - chr2.4:10916011-10916030 MS.gene31508:intron 25.0%
! GAGAAAATTGATGAAAGAAA+GGG - chr2.4:10916712-10916731 MS.gene31508:CDS 25.0%
! TAAAGCCAAATTAAGAAACA+CGG + chr2.4:10915588-10915607 None:intergenic 25.0%
! TGCTATAATCTAGTAGAAAA+AGG - chr2.4:10915346-10915365 MS.gene31508:intron 25.0%
!! AAATTATGAAGTGCTTATGT+TGG - chr2.4:10915959-10915978 MS.gene31508:CDS 25.0%
!! AGTCAAACTATTTTCATACA+AGG + chr2.4:10916505-10916524 None:intergenic 25.0%
!! CTTCATAGCACTATATATTT+TGG + chr2.4:10916013-10916032 None:intergenic 25.0%
!! TATTTTCTAATGACTCTGTT+CGG + chr2.4:10915451-10915470 None:intergenic 25.0%
!!! AAATCCAGTTTTAGCTAAAA+TGG - chr2.4:10915867-10915886 MS.gene31508:intron 25.0%
AGGTGATTATTGTACATCTT+TGG - chr2.4:10916135-10916154 MS.gene31508:intron 30.0%
ATTGTTCATCCTTGAATTGT+TGG + chr2.4:10916764-10916783 None:intergenic 30.0%
GAAGAAGTTGAAAACTGATT+AGG - chr2.4:10915756-10915775 MS.gene31508:CDS 30.0%
GATTAGGGTTTCATAATTCA+GGG - chr2.4:10915772-10915791 MS.gene31508:intron 30.0%
GGAGAAAATTGATGAAAGAA+AGG - chr2.4:10916711-10916730 MS.gene31508:CDS 30.0%
TAGTTCAAACCAACAATTCA+AGG - chr2.4:10916752-10916771 MS.gene31508:CDS 30.0%
TCTAAACAAACAATTGTCTG+TGG + chr2.4:10916812-10916831 None:intergenic 30.0%
TGATTAGGGTTTCATAATTC+AGG - chr2.4:10915771-10915790 MS.gene31508:intron 30.0%
TGATTGAACTTAGCTTATAG+AGG - chr2.4:10915175-10915194 MS.gene31508:intron 30.0%
TGTATTATAGTAAAGCAGAC+GGG - chr2.4:10915688-10915707 MS.gene31508:CDS 30.0%
TTAGCTAAAATGGCAATAAG+TGG - chr2.4:10915877-10915896 MS.gene31508:CDS 30.0%
TTTGACTATAATGATCTGTC+AGG + chr2.4:10915612-10915631 None:intergenic 30.0%
! ATTGAGTTGTTTATCCAAAG+AGG - chr2.4:10915486-10915505 MS.gene31508:CDS 30.0%
!! CTCAGGTATGTTTTTGAATT+TGG - chr2.4:10915929-10915948 MS.gene31508:CDS 30.0%
!! TATTTAGATCAGGTCTTGTT+GGG - chr2.4:10916066-10916085 MS.gene31508:intron 30.0%
!!! ATTGCCATTTTAGCTAAAAC+TGG + chr2.4:10915874-10915893 None:intergenic 30.0%
!!! GATTTTTTATCTACTGGCAT+AGG - chr2.4:10916436-10916455 MS.gene31508:intron 30.0%
!!! TACATCTTTGGTTTGGATTT+TGG - chr2.4:10916147-10916166 MS.gene31508:intron 30.0%
AAAAGACAGAAAAGTCCTTG+AGG - chr2.4:10914952-10914971 MS.gene31508:intron 35.0%
AATAGAAGAAGCAACTGACA+TGG + chr2.4:10914807-10914826 None:intergenic 35.0%
AATAGTGAGAAAGAGATCCA+TGG + chr2.4:10916100-10916119 None:intergenic 35.0%
AATATGTGCCTGAACACAAT+TGG - chr2.4:10915818-10915837 MS.gene31508:intron 35.0%
ATAAGTTCTTACAGTGAGCA+TGG + chr2.4:10916391-10916410 None:intergenic 35.0%
ATCTCATATTCACACCTCTT+TGG + chr2.4:10915503-10915522 None:intergenic 35.0%
ATGATCAATGGTGAGCAATT+TGG + chr2.4:10915089-10915108 None:intergenic 35.0%
ATGCCAGTAATCATGATCAA+TGG + chr2.4:10915101-10915120 None:intergenic 35.0%
ATTACAGCATGTGAACAAAG+AGG + chr2.4:10916614-10916633 None:intergenic 35.0%
CACACCATAAGTAATCAGAT+GGG + chr2.4:10916910-10916929 None:intergenic 35.0%
GACTCTTTGGATAACATCTA+TGG - chr2.4:10916342-10916361 MS.gene31508:intron 35.0%
GCTCGATCAAACTCAAAAAT+AGG + chr2.4:10916041-10916060 None:intergenic 35.0%
GTATTATAGTAAAGCAGACG+GGG - chr2.4:10915689-10915708 MS.gene31508:CDS 35.0%
TAAGTTCTTACAGTGAGCAT+GGG + chr2.4:10916390-10916409 None:intergenic 35.0%
TCACCATTGATCATGATTAC+TGG - chr2.4:10915095-10915114 MS.gene31508:intron 35.0%
TTCACTCTAATATGCTTCAC+AGG - chr2.4:10916860-10916879 MS.gene31508:CDS 35.0%
TTGTCTACTCAATTGGAGAT+TGG - chr2.4:10915902-10915921 MS.gene31508:CDS 35.0%
! ACCATCTACTTTGTGGTTTT+GGG - chr2.4:10916306-10916325 MS.gene31508:intron 35.0%
! ATGAAGTGCTTATGTTGGAT+AGG - chr2.4:10915964-10915983 MS.gene31508:CDS 35.0%
! CTATTTAGATCAGGTCTTGT+TGG - chr2.4:10916065-10916084 MS.gene31508:intron 35.0%
! CTCTTTTTCCTTTCCAACAA+TGG - chr2.4:10916226-10916245 MS.gene31508:intron 35.0%
! TGAAGTGCTTATGTTGGATA+GGG - chr2.4:10915965-10915984 MS.gene31508:CDS 35.0%
! TTTTCCTTTCCAACAATGGT+GGG - chr2.4:10916230-10916249 MS.gene31508:intron 35.0%
! TTTTTCCTTTCCAACAATGG+TGG - chr2.4:10916229-10916248 MS.gene31508:intron 35.0%
!!! TATGATACGACGTCGTTTTT+TGG + chr2.4:10914888-10914907 None:intergenic 35.0%
!!! TTTTTGGTTTGGGAAGAGAA+AGG + chr2.4:10914872-10914891 None:intergenic 35.0%
AAACTGTGTGGTCAGCTATT+TGG - chr2.4:10916280-10916299 MS.gene31508:intron 40.0%
AAATAGCTGACCACACAGTT+TGG + chr2.4:10916281-10916300 None:intergenic 40.0%
AATTGGAGATTGGATTGCTC+AGG - chr2.4:10915912-10915931 MS.gene31508:CDS 40.0%
ACCCAAAACCACAAAGTAGA+TGG + chr2.4:10916310-10916329 None:intergenic 40.0%
AGGGTTTCATAATTCAGGGT+TGG - chr2.4:10915776-10915795 MS.gene31508:intron 40.0%
AGTGGAGTTGTCTACTCAAT+TGG - chr2.4:10915895-10915914 MS.gene31508:CDS 40.0%
ATCAATGCTGCAATCGTTCT+CGG - chr2.4:10915043-10915062 MS.gene31508:intron 40.0%
CAATAATCACCTCACACAGT+TGG + chr2.4:10916127-10916146 None:intergenic 40.0%
CCACACCATAAGTAATCAGA+TGG + chr2.4:10916911-10916930 None:intergenic 40.0%
CCATCTGATTACTTATGGTG+TGG - chr2.4:10916908-10916927 MS.gene31508:CDS 40.0%
CGTTGCCGTGTTTCTTAATT+TGG - chr2.4:10915580-10915599 MS.gene31508:intron 40.0%
CTATTACTACCAACTGTGTG+AGG - chr2.4:10916115-10916134 MS.gene31508:intron 40.0%
GGTCAAAAGCAACTTTAGCA+GGG + chr2.4:10916260-10916279 None:intergenic 40.0%
TAAGTAATCAGATGGGCGAA+AGG + chr2.4:10916903-10916922 None:intergenic 40.0%
TAGGCAATCCAATTGTGTTC+AGG + chr2.4:10915829-10915848 None:intergenic 40.0%
TGCTTTCAGAGATTGCTCAT+AGG + chr2.4:10915848-10915867 None:intergenic 40.0%
TGGTCAAAAGCAACTTTAGC+AGG + chr2.4:10916261-10916280 None:intergenic 40.0%
TGTGGAACAAAGGCTTCTTT+GGG - chr2.4:10916935-10916954 MS.gene31508:CDS 40.0%
TTCGCCCATCTGATTACTTA+TGG - chr2.4:10916903-10916922 MS.gene31508:CDS 40.0%
TTGGAACACCATCTACTTTG+TGG - chr2.4:10916299-10916318 MS.gene31508:intron 40.0%
TTGTTTGCGTTGTGTAACAC+AGG - chr2.4:10916203-10916222 MS.gene31508:intron 40.0%
TTTGTTGCGTTTCGACTCTT+TGG - chr2.4:10916329-10916348 MS.gene31508:intron 40.0%
! CACCATCTACTTTGTGGTTT+TGG - chr2.4:10916305-10916324 MS.gene31508:intron 40.0%
!! TTGCTTTTGACCAAACTGTG+TGG - chr2.4:10916268-10916287 MS.gene31508:intron 40.0%
!!! ACGACGTCGTTTTTTGGTTT+GGG + chr2.4:10914882-10914901 None:intergenic 40.0%
!!! TACGACGTCGTTTTTTGGTT+TGG + chr2.4:10914883-10914902 None:intergenic 40.0%
!!! TTTTTGAGTTTGATCGAGCG+CGG - chr2.4:10916042-10916061 MS.gene31508:intron 40.0%
AAGGCGAAGAAGAATCCTCA+AGG + chr2.4:10914970-10914989 None:intergenic 45.0%
ACAACCCACCATTGTTGGAA+AGG + chr2.4:10916237-10916256 None:intergenic 45.0%
ACCTCTGTAATACCCTTGGA+AGG + chr2.4:10914989-10915008 None:intergenic 45.0%
AGCAACCTCTGTAATACCCT+TGG + chr2.4:10914993-10915012 None:intergenic 45.0%
ATGAAAGAAAGGGGTCAGAG+AGG - chr2.4:10916722-10916741 MS.gene31508:CDS 45.0%
CAAAGAAGCCTTTGTTCCAC+AGG + chr2.4:10916936-10916955 None:intergenic 45.0%
CATAATCAGCTCCGTTACAG+AGG - chr2.4:10914904-10914923 MS.gene31508:intron 45.0%
CTCTAATATGCTTCACAGGC+AGG - chr2.4:10916864-10916883 MS.gene31508:CDS 45.0%
CTGTGGAACAAAGGCTTCTT+TGG - chr2.4:10916934-10916953 MS.gene31508:CDS 45.0%
CTTGTTGGGTTTACTCTCCA+TGG - chr2.4:10916080-10916099 MS.gene31508:intron 45.0%
GATTCTTCTTCGCCTTCCAA+GGG - chr2.4:10914974-10914993 MS.gene31508:intron 45.0%
GGACTGTATTGAGCTCATCT+GGG - chr2.4:10916959-10916978 MS.gene31508:CDS 45.0%
TACTTATGGTGTGGTTCCTG+TGG - chr2.4:10916917-10916936 MS.gene31508:CDS 45.0%
TAGGCACTTGCGAAACTCTT+TGG - chr2.4:10916455-10916474 MS.gene31508:intron 45.0%
TGCTTCACGATCCTCTGTAA+CGG + chr2.4:10914918-10914937 None:intergenic 45.0%
TGGACTGTATTGAGCTCATC+TGG - chr2.4:10916958-10916977 MS.gene31508:CDS 45.0%
TTATAGTAAAGCAGACGGGG+AGG - chr2.4:10915692-10915711 MS.gene31508:CDS 45.0%
TTGGGAAGAGAAAGGAGGTA+GGG + chr2.4:10914864-10914883 None:intergenic 45.0%
TTTGGGAAGAGAAAGGAGGT+AGG + chr2.4:10914865-10914884 None:intergenic 45.0%
! GAGAACGATTGCAGCATTGA+TGG + chr2.4:10915044-10915063 None:intergenic 45.0%
!! TTGGTTTGGGAAGAGAAAGG+AGG + chr2.4:10914869-10914888 None:intergenic 45.0%
AAAGGAGGTAGGGAGATGTG+GGG + chr2.4:10914854-10914873 None:intergenic 50.0%
AATATGCTTCACAGGCAGGC+TGG - chr2.4:10916868-10916887 MS.gene31508:CDS 50.0%
AGAAAGGAGGTAGGGAGATG+TGG + chr2.4:10914856-10914875 None:intergenic 50.0%
AGAGGATCGTGAAGCAGCTT+CGG - chr2.4:10914922-10914941 MS.gene31508:intron 50.0%
GAAAGGAGGTAGGGAGATGT+GGG + chr2.4:10914855-10914874 None:intergenic 50.0%
GCTGACACTGATATCCTCAC+CGG - chr2.4:10915013-10915032 MS.gene31508:intron 50.0%
GCTGCAATCGTTCTCGGATT+TGG - chr2.4:10915049-10915068 MS.gene31508:intron 50.0%
GGAACAAAGGCTTCTTTGGG+TGG - chr2.4:10916938-10916957 MS.gene31508:CDS 50.0%
GGATTCTTCTTCGCCTTCCA+AGG - chr2.4:10914973-10914992 MS.gene31508:intron 50.0%
GTGTGGTTCCTGTGGAACAA+AGG - chr2.4:10916925-10916944 MS.gene31508:CDS 50.0%
!! GAGATGTGGGGCTTTGAGAA+GGG + chr2.4:10914842-10914861 None:intergenic 50.0%
!! GCCTTCCAAGGGTATTACAG+AGG - chr2.4:10914985-10915004 MS.gene31508:intron 50.0%
AGTAAAGCAGACGGGGAGGA+TGG - chr2.4:10915696-10915715 MS.gene31508:CDS 55.0%
CAGGGACAACCCACCATTGT+TGG + chr2.4:10916242-10916261 None:intergenic 55.0%
CGAGCGCGGCTATTTAGATC+AGG - chr2.4:10916056-10916075 MS.gene31508:intron 55.0%
!! GGAGATGTGGGGCTTTGAGA+AGG + chr2.4:10914843-10914862 None:intergenic 55.0%
!! GGGCTTTGAGAAGGGAAGGA+GGG + chr2.4:10914834-10914853 None:intergenic 55.0%
!! TGCAGCATTGATGGCACGTC+CGG + chr2.4:10915035-10915054 None:intergenic 55.0%
!! TGTGGGGCTTTGAGAAGGGA+AGG + chr2.4:10914838-10914857 None:intergenic 55.0%
CACAGGCAGGCTGGAAGCTT+TGG - chr2.4:10916877-10916896 MS.gene31508:CDS 60.0%
! CATTGATGGCACGTCCGGTG+AGG + chr2.4:10915030-10915049 None:intergenic 60.0%
!! GGGGCTTTGAGAAGGGAAGG+AGG + chr2.4:10914835-10914854 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 10914800 10917001 10914800 ID=MS.gene31508
chr2.4 mRNA 10914800 10917001 10914800 ID=MS.gene31508.t1;Parent=MS.gene31508
chr2.4 exon 10916681 10917001 10916681 ID=MS.gene31508.t1.exon1;Parent=MS.gene31508.t1
chr2.4 CDS 10916681 10917001 10916681 ID=cds.MS.gene31508.t1;Parent=MS.gene31508.t1
chr2.4 exon 10915868 10916008 10915868 ID=MS.gene31508.t1.exon2;Parent=MS.gene31508.t1
chr2.4 CDS 10915868 10916008 10915868 ID=cds.MS.gene31508.t1;Parent=MS.gene31508.t1
chr2.4 exon 10915665 10915778 10915665 ID=MS.gene31508.t1.exon3;Parent=MS.gene31508.t1
chr2.4 CDS 10915665 10915778 10915665 ID=cds.MS.gene31508.t1;Parent=MS.gene31508.t1
chr2.4 exon 10915403 10915576 10915403 ID=MS.gene31508.t1.exon4;Parent=MS.gene31508.t1
chr2.4 CDS 10915403 10915576 10915403 ID=cds.MS.gene31508.t1;Parent=MS.gene31508.t1
chr2.4 exon 10914800 10914919 10914800 ID=MS.gene31508.t1.exon5;Parent=MS.gene31508.t1
chr2.4 CDS 10914800 10914919 10914800 ID=cds.MS.gene31508.t1;Parent=MS.gene31508.t1
Gene Sequence

>MS.gene31508

ATGGCCATGTCAGTTGCTTCTTCTATTTGCACCCTCCTTCCCTTCTCAAAGCCCCACATCTCCCTACCTCCTTTCTCTTCCCAAACCAAAAAACGACGTCGTATCATAATCAGCTCCGTTACAGAGGATCGTGAAGCAGCTTCGGTTGTGTCAAAAGACAGAAAAGTCCTTGAGGATTCTTCTTCGCCTTCCAAGGGTATTACAGAGGTTGCTGCTGACACTGATATCCTCACCGGACGTGCCATCAATGCTGCAATCGTTCTCGGATTTGGAGCTTTTGCTGTCACCAAATTGCTCACCATTGATCATGATTACTGGCATGTTAGTTTCTTCTATTTTATATCCAAATTTTGCTTCTTTTTCTATTTTAGTTAGTGATTGAACTTAGCTTATAGAGGATCAATTTATAGCGAATAACCAATAAACTAGCTTATTATTGACAACAGATAAGCTAGCTGATTGAACTTGTAGTGTTCGATAAAATTAACGATTGAACTAGATGATAAATCTGAAGTTATAACTTGCTTGAAGTAGCTTATCAAAAACTGCTATAATCTAGTAGAAAAAGGATATAGCTTGTGAGAAAAAATTGACAAGTTTTGATTAGTCATACGAACTTATAAGCTATAAGTTCAAAATTTTGTCTTGCCGAACAGAGTCATTAGAAAATAGTTCATATGCGCTTAATTGAGTTGTTTATCCAAAGAGGTGTGAATATGAGATGACCATATTCTATCTATACCAAACTATGTTTCTTAATTTATTTCTTTACTTTGTGTTCGTTGCCGTGTTTCTTAATTTGGCTTTAACCTGACAGATCATTATAGTCAAATGTGATACTTCAAGATTTTCAATTAGTTGATCGCAAAAGTCACTCGCTTTTTACAATGTATTATAGTAAAGCAGACGGGGAGGATGGTTGAATTGATTCTAGTGTATTTTCTGTATTGTAAATGGAAGAAGTTGAAAACTGATTAGGGTTTCATAATTCAGGGTTGGACACTTTATGAGATACTGAAATATGTGCCTGAACACAATTGGATTGCCTATGAGCAATCTCTGAAAGCAAATCCAGTTTTAGCTAAAATGGCAATAAGTGGAGTTGTCTACTCAATTGGAGATTGGATTGCTCAGGTATGTTTTTGAATTTGGCTTGAAAAAATTATGAAGTGCTTATGTTGGATAGGGTTTTCGTATTAACTTCTTCTTACCAAAATATATAGTGCTATGAAGGAAAGCCTATTTTTGAGTTTGATCGAGCGCGGCTATTTAGATCAGGTCTTGTTGGGTTTACTCTCCATGGATCTCTTTCTCACTATTACTACCAACTGTGTGAGGTGATTATTGTACATCTTTGGTTTGGATTTTGGAACAATTAGTTTGTATTATGTCAATTGCTAAAATTGTTTGCGTTGTGTAACACAGGCTCTTTTTCCTTTCCAACAATGGTGGGTTGTCCCTGCTAAAGTTGCTTTTGACCAAACTGTGTGGTCAGCTATTTGGAACACCATCTACTTTGTGGTTTTGGGTTTGTTGCGTTTCGACTCTTTGGATAACATCTATGGTGAACTCAAATCAACATTTTTTCCCATGCTCACTGTAAGAACTTATTTGTTTCTTAGGGCCTGTTTGAATTGATTTTTTATCTACTGGCATAGGCACTTGCGAAACTCTTTGGAAGAGCTTATTAAAAGAATTTATACCTTGTATGAAAATAGTTTGACTTGATTTCATATTTTGTTATAGAAATAGCTTATACATAAACACTTATATGATAAGTGCTTAATTAAGACGTTATCTGTAATAACTCGCCTCTTTGTTCACATGCTGTAATTTTATTGTACTGTCACTGAGAAACGTTCAAAATCACGTTTCAAATAATCGAAATCATGTTACAAAAATAAAGCAAAAGGAGAAAATTGATGAAAGAAAGGGGTCAGAGAGGAATTCTATAGTTCAAACCAACAATTCAAGGATGAACAATCGAATGATGAATAAATGAACTGTATCCACAGACAATTGTTTGTTTAGAAATTCAGTTCTGTTTTGATGACTAAAATTTCACTCTAATATGCTTCACAGGCAGGCTGGAAGCTTTGGCCTTTCGCCCATCTGATTACTTATGGTGTGGTTCCTGTGGAACAAAGGCTTCTTTGGGTGGACTGTATTGAGCTCATCTGGGTCACAATACTTTCAACGTAA
Protein sequence

>MS.gene31508.t1

MAMSVASSICTLLPFSKPHISLPPFSSQTKKRRRIIISSVTEDREAASVVSKDRKVLEDSSSPSKGITEVAADTDILTGRAINAAIVLGFGAFAVTKLLTIDHDYWHGWTLYEILKYVPEHNWIAYEQSLKANPVLAKMAISGVVYSIGDWIAQCYEGKPIFEFDRARLFRSGLVGFTLHGSLSHYYYQLCEALFPFQQWWVVPAKVAFDQTVWSAIWNTIYFVVLGLLRFDSLDNIYGELKSTFFPMLTAGWKLWPFAHLITYGVVPVEQRLLWVDCIELIWVTILST