AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31572

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31572.t1 MTR_2g089140 98.969 291 3 0 1 291 1 291 0.0 610
MS.gene31572.t1 MTR_4g045853 78.351 291 62 1 2 291 3 293 0.0 500
MS.gene31572.t1 MTR_2g089140 98.684 228 3 0 64 291 1 228 9.38e-174 479
MS.gene31572.t1 MTR_7g084770 51.203 291 121 4 11 288 7 289 5.72e-105 308
MS.gene31572.t1 MTR_7g084760 50.172 291 124 4 11 288 7 289 4.75e-103 303
MS.gene31572.t1 MTR_7g084750 53.383 266 114 3 25 288 32 289 3.17e-102 300
MS.gene31572.t1 MTR_6g033055 47.945 292 135 5 5 288 7 289 8.17e-101 297
MS.gene31572.t1 MTR_4g097700 51.095 274 122 3 17 287 61 325 6.37e-100 296
MS.gene31572.t1 MTR_6g033085 48.454 291 133 5 6 288 8 289 9.93e-100 294
MS.gene31572.t1 MTR_4g097640 51.866 268 117 3 23 287 30 288 1.21e-99 294
MS.gene31572.t1 MTR_4g097670 51.866 268 117 3 23 287 30 288 1.21e-99 294
MS.gene31572.t1 MTR_4g128410 50.549 273 123 4 17 286 17 280 2.69e-97 288
MS.gene31572.t1 MTR_7g093530 50.000 274 125 4 17 287 16 280 2.17e-94 280
MS.gene31572.t1 MTR_3g084620 49.306 288 125 6 5 288 9 279 2.32e-94 280
MS.gene31572.t1 MTR_3g084630 48.958 288 126 6 5 288 9 279 6.67e-94 279
MS.gene31572.t1 MTR_4g126920 49.091 275 129 4 15 286 15 281 2.50e-93 278
MS.gene31572.t1 MTR_2g038860 49.117 283 137 3 8 287 9 287 2.80e-92 275
MS.gene31572.t1 MTR_2g038705 49.117 283 137 3 8 287 9 287 2.80e-92 275
MS.gene31572.t1 MTR_8g081040 47.183 284 126 4 13 286 12 281 4.84e-92 274
MS.gene31572.t1 MTR_1g105495 49.265 272 126 4 20 286 30 294 2.70e-91 273
MS.gene31572.t1 MTR_4g128570 47.387 287 125 5 4 287 10 273 6.06e-91 271
MS.gene31572.t1 MTR_6g088320 44.718 284 147 3 10 288 7 285 2.97e-90 270
MS.gene31572.t1 MTR_4g128400 47.122 278 136 4 12 287 16 284 1.70e-89 268
MS.gene31572.t1 MTR_4g128580 48.327 269 131 4 22 287 23 286 8.22e-89 266
MS.gene31572.t1 MTR_1g105900 44.330 291 139 5 12 286 8 291 9.02e-87 261
MS.gene31572.t1 MTR_8g102910 44.211 285 151 4 7 288 2 281 2.68e-85 257
MS.gene31572.t1 MTR_8g102220 44.521 292 130 5 3 290 7 270 1.02e-83 253
MS.gene31572.t1 MTR_5g091730 44.326 282 140 5 8 288 15 280 2.25e-81 247
MS.gene31572.t1 MTR_4g128590 44.948 287 134 5 4 286 9 275 1.17e-80 245
MS.gene31572.t1 MTR_8g013055 42.642 265 141 4 25 287 31 286 9.08e-77 236
MS.gene31572.t1 MTR_3g089540 43.284 268 137 4 25 291 34 287 1.12e-74 230
MS.gene31572.t1 MTR_7g056090 40.484 289 147 8 4 279 1 277 1.06e-64 204
MS.gene31572.t1 MTR_2g049130 36.824 296 160 9 6 290 2 281 6.12e-58 187
MS.gene31572.t1 MTR_2g049030 38.224 259 143 8 25 280 30 274 8.67e-58 187
MS.gene31572.t1 MTR_7g102260 36.170 282 152 6 18 286 25 291 1.81e-55 181
MS.gene31572.t1 MTR_1g033420 36.424 302 167 8 1 287 1 292 2.12e-55 182
MS.gene31572.t1 MTR_5g029100 38.247 251 145 5 41 286 60 305 7.70e-55 181
MS.gene31572.t1 MTR_1g063020 36.000 275 153 5 20 286 35 294 3.12e-54 178
MS.gene31572.t1 MTR_2g095800 35.273 275 156 5 20 286 49 309 3.40e-54 178
MS.gene31572.t1 MTR_4g057450 33.455 275 160 4 20 286 45 304 6.47e-53 175
MS.gene31572.t1 MTR_5g029100 35.034 294 160 10 4 286 1 274 6.00e-51 170
MS.gene31572.t1 MTR_8g090100 34.420 276 164 8 20 287 16 282 1.79e-49 167
MS.gene31572.t1 MTR_8g064180 33.214 280 168 8 16 286 41 310 1.54e-47 161
MS.gene31572.t1 MTR_8g479340 44.118 102 50 2 185 286 41 135 2.33e-23 93.6
MS.gene31572.t1 MTR_8g032640 34.254 181 108 6 45 220 33 207 1.67e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31572.t1 AT4G03210 68.836 292 84 4 1 291 4 289 7.96e-157 439
MS.gene31572.t1 AT4G03210 74.262 237 55 3 55 291 31 261 6.54e-138 390
MS.gene31572.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene31572.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene31572.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene31572.t1 AT4G37800 50.175 285 124 5 10 286 15 289 1.40e-99 294
MS.gene31572.t1 AT5G65730 48.772 285 132 5 6 286 16 290 3.88e-97 288
MS.gene31572.t1 AT3G23730 48.582 282 137 3 12 290 14 290 1.45e-96 286
MS.gene31572.t1 AT2G06850 51.128 266 120 3 25 288 35 292 3.91e-96 285
MS.gene31572.t1 AT4G14130 46.758 293 143 5 2 290 5 288 3.65e-92 275
MS.gene31572.t1 AT1G11545 48.161 299 129 7 5 286 10 299 4.33e-92 275
MS.gene31572.t1 AT5G57560 46.996 283 137 4 12 287 6 282 1.21e-91 273
MS.gene31572.t1 AT4G25810 46.975 281 139 4 10 287 11 284 4.24e-91 272
MS.gene31572.t1 AT2G06850 52.542 236 104 2 53 288 5 232 2.57e-90 268
MS.gene31572.t1 AT5G57530 48.708 271 125 5 20 286 22 282 2.09e-89 268
MS.gene31572.t1 AT4G28850 43.729 295 154 3 4 290 1 291 7.15e-89 266
MS.gene31572.t1 AT5G57540 50.794 252 112 4 37 286 40 281 8.08e-89 266
MS.gene31572.t1 AT5G57550 46.667 285 135 7 8 289 14 284 2.51e-88 265
MS.gene31572.t1 AT4G30270 47.600 250 107 3 39 287 40 266 1.02e-84 255
MS.gene31572.t1 AT2G14620 43.599 289 153 4 1 286 13 294 1.27e-84 256
MS.gene31572.t1 AT4G25820 46.182 275 136 4 15 286 20 285 7.74e-84 254
MS.gene31572.t1 AT5G48070 43.390 295 141 6 4 286 1 281 1.07e-81 248
MS.gene31572.t1 AT2G14620 47.436 234 115 3 54 286 18 244 4.60e-80 243
MS.gene31572.t1 AT2G18800 42.953 298 153 7 4 290 9 300 6.35e-80 244
MS.gene31572.t1 AT4G13090 41.356 295 157 6 1 286 1 288 5.26e-79 241
MS.gene31572.t1 AT2G14620 47.556 225 110 3 63 286 16 233 2.62e-77 235
MS.gene31572.t1 AT3G25050 42.188 256 137 5 33 286 43 289 1.77e-74 230
MS.gene31572.t1 AT4G30280 40.541 296 148 7 3 286 2 281 8.16e-72 223
MS.gene31572.t1 AT4G30290 45.299 234 114 4 54 286 56 276 9.37e-72 223
MS.gene31572.t1 AT4G13080 42.424 264 139 5 25 286 39 291 2.74e-71 222
MS.gene31572.t1 AT1G65310 44.681 235 116 4 54 287 61 282 6.62e-71 220
MS.gene31572.t1 AT1G65310 44.681 235 116 4 54 287 83 304 9.02e-71 221
MS.gene31572.t1 AT3G44990 38.909 275 145 7 20 286 34 293 1.55e-58 189
MS.gene31572.t1 AT1G32170 37.838 296 157 8 7 287 11 294 4.39e-57 187
MS.gene31572.t1 AT2G36870 35.740 277 155 5 20 288 38 299 5.71e-55 180
MS.gene31572.t1 AT2G01850 36.897 290 168 6 4 287 11 291 1.03e-54 181
MS.gene31572.t1 AT1G14720 35.764 288 161 8 15 287 13 291 9.87e-54 178
MS.gene31572.t1 AT4G18990 36.727 275 149 6 34 287 43 313 4.46e-52 174
MS.gene31572.t1 AT1G10550 35.857 251 154 4 42 286 60 309 2.07e-51 171
MS.gene31572.t1 AT3G48580 35.081 248 138 7 39 286 49 273 2.71e-47 160
MS.gene31572.t1 AT3G48580 35.043 234 129 7 53 286 4 214 2.79e-45 152
MS.gene31572.t1 AT4G18990 37.931 203 112 4 95 287 41 239 1.62e-41 145
MS.gene31572.t1 AT3G48580 30.242 248 130 8 39 286 49 253 1.29e-31 118
MS.gene31572.t1 AT2G36870 39.716 141 77 2 20 152 38 178 2.39e-28 107

Find 72 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAGTCATCAACTTATT+TGG 0.098056 2.4:-11714375 MS.gene31572:CDS
ACACCCATTGCTTGGTCTTT+TGG 0.201495 2.4:+11714619 None:intergenic
TTCACACCTACTCAATCTTT+TGG 0.243898 2.4:-11714819 MS.gene31572:CDS
AAATTTGTGTGTACCCTTAT+TGG 0.244898 2.4:+11714664 None:intergenic
AATAAGGGTACACACAAATT+TGG 0.249258 2.4:-11714662 MS.gene31572:CDS
CTCAAACTTGACAATTATTC+TGG 0.264743 2.4:-11715961 MS.gene31572:intron
CCTATGGTTTGATCCATCTA+AGG 0.284782 2.4:-11714845 MS.gene31572:CDS
GTTTAAGCAAATCTCCTTCA+TGG 0.300049 2.4:+11715983 None:intergenic
ATTAATCTCAAAATCTTTGT+AGG 0.312339 2.4:+11714510 None:intergenic
ATGTGAATGGTGTTGGTAAT+AGG 0.322678 2.4:-11714882 MS.gene31572:CDS
TCTAAGAGCAAGTATATGTT+TGG 0.325807 2.4:-11715681 MS.gene31572:CDS
CGCCGATACCGCTAGGTTCC+CGG 0.343049 2.4:-11714320 MS.gene31572:CDS
AATCTCCTTCATGGACAAAA+TGG 0.349803 2.4:+11715992 None:intergenic
TCAGAGTCATCAACTTATTT+GGG 0.358684 2.4:-11714374 MS.gene31572:CDS
AGGAACTCTTCCAACCTGGC+TGG 0.378050 2.4:-11716023 MS.gene31572:CDS
CATTCACATACACATTGGTT+TGG 0.378407 2.4:+11714896 None:intergenic
GTCATCAACTTATTTGGGTT+AGG 0.378827 2.4:-11714369 MS.gene31572:CDS
GACTAGGATGTCTTGTCTCT+TGG 0.394663 2.4:-11716097 MS.gene31572:CDS
TGTGAATGGTGTTGGTAATA+GGG 0.395674 2.4:-11714881 MS.gene31572:CDS
TTGGGTTAGGGCTAATCATA+TGG 0.396546 2.4:-11714356 MS.gene31572:CDS
TAGTGGATGAGACACCAATA+AGG 0.397181 2.4:-11714678 MS.gene31572:CDS
AATCAAATTCATTATGAGTT+GGG 0.401796 2.4:+11714959 None:intergenic
TCATCAACTTATTTGGGTTA+GGG 0.410906 2.4:-11714368 MS.gene31572:CDS
GCATTATCATTTGATGTCAC+TGG 0.424930 2.4:+11714469 None:intergenic
AGTTGCTTCTTCTAAATTTG+AGG 0.431441 2.4:-11716043 MS.gene31572:CDS
ACTAGGATGTCTTGTCTCTT+GGG 0.432912 2.4:-11716096 MS.gene31572:CDS
CTAAGAGCAAGTATATGTTT+GGG 0.441320 2.4:-11715680 MS.gene31572:CDS
ACATTGGTTTGGACTGAGTA+AGG 0.449690 2.4:+11714907 None:intergenic
CAATATGGAATGCAGATGAT+TGG 0.451938 2.4:-11714588 MS.gene31572:CDS
AAATCAAATTCATTATGAGT+TGG 0.460794 2.4:+11714958 None:intergenic
CTTCCAACCTGGCTGGGCTA+TGG 0.469649 2.4:-11716016 MS.gene31572:CDS
GTAGTGAAGATAAGAAATAC+TGG 0.473390 2.4:-11714432 MS.gene31572:CDS
AACTGTATACACCCATTGCT+TGG 0.473431 2.4:+11714611 None:intergenic
AATATGGAATGCAGATGATT+GGG 0.477902 2.4:-11714587 MS.gene31572:CDS
TGGGTGTATACAGTTCAATA+TGG 0.480547 2.4:-11714603 MS.gene31572:CDS
GGCCGGGAACCTAGCGGTAT+CGG 0.482358 2.4:+11714318 None:intergenic
GGGAGCAAAGACTTAACCTA+TGG 0.510533 2.4:-11714861 MS.gene31572:CDS
TTCCCAAAAGACCAAGCAAT+GGG 0.521563 2.4:-11714622 MS.gene31572:CDS
ACACATTCAAGTGGTATGGC+CGG 0.522372 2.4:+11714301 None:intergenic
GGAACTCTTCCAACCTGGCT+GGG 0.527978 2.4:-11716022 MS.gene31572:CDS
GGTCCATAGCCCAGCCAGGT+TGG 0.529268 2.4:+11716013 None:intergenic
TAGGTGTGAAAATCCTTAGA+TGG 0.533288 2.4:+11714832 None:intergenic
CACATTCAAGTGGTATGGCC+GGG 0.541820 2.4:+11714302 None:intergenic
GACTGTGCATCTCAAACTTG+TGG 0.545064 2.4:-11715652 MS.gene31572:CDS
ACGAACACATTCAAGTGGTA+TGG 0.546680 2.4:+11714297 None:intergenic
AGTGGATGAGACACCAATAA+GGG 0.548753 2.4:-11714677 MS.gene31572:CDS
CTTGTGGAGGGTGATTCTGC+TGG 0.558882 2.4:-11715636 MS.gene31572:CDS
AAATGGTCCATAGCCCAGCC+AGG 0.563840 2.4:+11716009 None:intergenic
AACACCATTCACATACACAT+TGG 0.567232 2.4:+11714891 None:intergenic
AATATTGTGTAGGTTTCTAG+TGG 0.568671 2.4:-11714695 MS.gene31572:intron
ACTATTGCGCCGATACCGCT+AGG 0.569309 2.4:-11714327 MS.gene31572:CDS
CCTTAGATGGATCAAACCAT+AGG 0.576783 2.4:+11714845 None:intergenic
CAAACCAATGTGTATGTGAA+TGG 0.577035 2.4:-11714895 MS.gene31572:CDS
GTGGTCGTGTGAAAACAGAT+TGG 0.584545 2.4:-11714555 MS.gene31572:CDS
GTGTTGTAGATGTCATCTGA+AGG 0.588529 2.4:-11714982 MS.gene31572:intron
TTTGAGGAACTCTTCCAACC+TGG 0.592452 2.4:-11716027 MS.gene31572:CDS
AATGTGTATGTGAATGGTGT+TGG 0.599839 2.4:-11714889 MS.gene31572:CDS
TCTTTGTAGGTAGCAATGAA+AGG 0.607300 2.4:+11714523 None:intergenic
TGTGCATCTCAAACTTGTGG+AGG 0.612180 2.4:-11715649 MS.gene31572:CDS
TTGGTTCCAAAAGATTGAGT+AGG 0.615031 2.4:+11714813 None:intergenic
GTGCTTACACTACTTGACGT+TGG 0.615604 2.4:+11714794 None:intergenic
CTTCCCAAAAGACCAAGCAA+TGG 0.618909 2.4:-11714623 MS.gene31572:CDS
TGAAGATAAGAAATACTGGT+GGG 0.627242 2.4:-11714428 MS.gene31572:CDS
GTGAAGATAAGAAATACTGG+TGG 0.630914 2.4:-11714429 MS.gene31572:CDS
GCAGATGATTGGGCAACACA+AGG 0.635399 2.4:-11714577 MS.gene31572:CDS
ATAGTGAGCTCATTCAACAT+TGG 0.637932 2.4:+11714400 None:intergenic
GTGCATCTCAAACTTGTGGA+GGG 0.658391 2.4:-11715648 MS.gene31572:CDS
CACACAAATTTGGAACACAA+AGG 0.661364 2.4:-11714652 MS.gene31572:CDS
GACTGAGTAAGGTTCACCAG+TGG 0.675614 2.4:+11714918 None:intergenic
TGGTGACGAACACATTCAAG+TGG 0.684113 2.4:+11714292 None:intergenic
GATGATTGGGCAACACAAGG+TGG 0.684504 2.4:-11714574 MS.gene31572:CDS
TGGTATGGCCGGGAACCTAG+CGG 0.737450 2.4:+11714312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATTAAATTATTAACATA+TGG + chr2.4:11715625-11715644 None:intergenic 10.0%
!!! ATTTAACATTTGTTTTTTTA+AGG - chr2.4:11714456-11714475 MS.gene31572:CDS 10.0%
!! AATCCATAATTAAACTTAAA+AGG + chr2.4:11714553-11714572 None:intergenic 15.0%
!! ATAAAAGTCATAATAATTGA+TGG - chr2.4:11715345-11715364 MS.gene31572:intron 15.0%
!! GTTACTTATAGTAAAAAATA+TGG - chr2.4:11714655-11714674 MS.gene31572:CDS 15.0%
!! TATTAGATACTATGAATTAT+TGG + chr2.4:11715328-11715347 None:intergenic 15.0%
!! AAAAAATATGGAAATATTGC+AGG - chr2.4:11714667-11714686 MS.gene31572:CDS 20.0%
!! AAATCAAATTCATTATGAGT+TGG + chr2.4:11715429-11715448 None:intergenic 20.0%
!! AATCAAATTCATTATGAGTT+GGG + chr2.4:11715428-11715447 None:intergenic 20.0%
!! ATTAATCTCAAAATCTTTGT+AGG + chr2.4:11715877-11715896 None:intergenic 20.0%
!! TAGATCTTATTGTTTATAGA+TGG - chr2.4:11714583-11714602 MS.gene31572:CDS 20.0%
!! TATTAACATATGGATAATGT+AGG + chr2.4:11715615-11715634 None:intergenic 20.0%
!!! GAATTTGATTTTGAGTTTTT+GGG - chr2.4:11715438-11715457 MS.gene31572:intron 20.0%
!!! TGAATTTGATTTTGAGTTTT+TGG - chr2.4:11715437-11715456 MS.gene31572:intron 20.0%
!!! TGTCCTTTTAAGTTTAATTA+TGG - chr2.4:11714547-11714566 MS.gene31572:CDS 20.0%
! AAATTCCATATGGTTATTAG+AGG + chr2.4:11715258-11715277 None:intergenic 25.0%
! AATGTGGAATAAATTCCATA+TGG + chr2.4:11715268-11715287 None:intergenic 25.0%
! ATACTATGAATTATTGGTAC+GGG + chr2.4:11715322-11715341 None:intergenic 25.0%
! GATACTATGAATTATTGGTA+CGG + chr2.4:11715323-11715342 None:intergenic 25.0%
! GTTTGTTTATGTCCAAATAT+CGG + chr2.4:11714986-11715005 None:intergenic 25.0%
! TAATGAATGCAAGAATCAAT+TGG + chr2.4:11715180-11715199 None:intergenic 25.0%
! TATACATGTGAATATTGTGT+AGG - chr2.4:11715679-11715698 MS.gene31572:CDS 25.0%
! TTAAAAACAAGTAGGTAGAT+AGG + chr2.4:11715136-11715155 None:intergenic 25.0%
! TTCAATGGTTAAAAACAAGT+AGG + chr2.4:11715144-11715163 None:intergenic 25.0%
!! TTTTCTTGATTGCAAATATG+TGG - chr2.4:11715230-11715249 MS.gene31572:intron 25.0%
!!! CTTTGTGTTTTTTGTTTGTT+GGG - chr2.4:11714316-11714335 MS.gene31572:CDS 25.0%
!!! TCTTTGTGTTTTTTGTTTGT+TGG - chr2.4:11714315-11714334 MS.gene31572:CDS 25.0%
AAATTTGTGTGTACCCTTAT+TGG + chr2.4:11715723-11715742 None:intergenic 30.0%
AATATGGAATGCAGATGATT+GGG - chr2.4:11715797-11715816 MS.gene31572:intron 30.0%
AGTTGCTTCTTCTAAATTTG+AGG - chr2.4:11714341-11714360 MS.gene31572:CDS 30.0%
ATCAGAGTCATCAACTTATT+TGG - chr2.4:11716009-11716028 MS.gene31572:CDS 30.0%
CAGAATGTGTTCAATACAAT+CGG - chr2.4:11714951-11714970 MS.gene31572:CDS 30.0%
CTAAGAGCAAGTATATGTTT+GGG - chr2.4:11714704-11714723 MS.gene31572:intron 30.0%
CTCAAACTTGACAATTATTC+TGG - chr2.4:11714423-11714442 MS.gene31572:CDS 30.0%
GTAGTGAAGATAAGAAATAC+TGG - chr2.4:11715952-11715971 MS.gene31572:intron 30.0%
TCAGAGTCATCAACTTATTT+GGG - chr2.4:11716010-11716029 MS.gene31572:CDS 30.0%
TCATAAAGGGCAATAAAATG+TGG + chr2.4:11715284-11715303 None:intergenic 30.0%
TCTAAGAGCAAGTATATGTT+TGG - chr2.4:11714703-11714722 MS.gene31572:intron 30.0%
TGAAGATAAGAAATACTGGT+GGG - chr2.4:11715956-11715975 MS.gene31572:intron 30.0%
TTAAAAGGACATTCAGTTTC+AGG + chr2.4:11714538-11714557 None:intergenic 30.0%
! AATAAGGGTACACACAAATT+TGG - chr2.4:11715722-11715741 MS.gene31572:intron 30.0%
! AATATTGTGTAGGTTTCTAG+TGG - chr2.4:11715689-11715708 MS.gene31572:CDS 30.0%
! TCATCAACTTATTTGGGTTA+GGG - chr2.4:11716016-11716035 MS.gene31572:CDS 30.0%
AACACCATTCACATACACAT+TGG + chr2.4:11715496-11715515 None:intergenic 35.0%
AATCTCCTTCATGGACAAAA+TGG + chr2.4:11714395-11714414 None:intergenic 35.0%
AATGTGTATGTGAATGGTGT+TGG - chr2.4:11715495-11715514 MS.gene31572:intron 35.0%
ATAGTGAGCTCATTCAACAT+TGG + chr2.4:11715987-11716006 None:intergenic 35.0%
ATGCAAGAATCAATTGGATG+TGG + chr2.4:11715174-11715193 None:intergenic 35.0%
CAAACCAATGTGTATGTGAA+TGG - chr2.4:11715489-11715508 MS.gene31572:intron 35.0%
CAATATGGAATGCAGATGAT+TGG - chr2.4:11715796-11715815 MS.gene31572:intron 35.0%
CGATTGTATTGAACACATTC+TGG + chr2.4:11714953-11714972 None:intergenic 35.0%
CGGATATATCATCCGATATT+TGG - chr2.4:11714971-11714990 MS.gene31572:CDS 35.0%
GAGTCACATTCACTCATAAA+GGG + chr2.4:11715297-11715316 None:intergenic 35.0%
GCATTATCATTTGATGTCAC+TGG + chr2.4:11715918-11715937 None:intergenic 35.0%
GTGAAGATAAGAAATACTGG+TGG - chr2.4:11715955-11715974 MS.gene31572:intron 35.0%
GTTAGCAGTCTTAGTCTATT+AGG + chr2.4:11715099-11715118 None:intergenic 35.0%
GTTTAAGCAAATCTCCTTCA+TGG + chr2.4:11714404-11714423 None:intergenic 35.0%
TAGGTGTGAAAATCCTTAGA+TGG + chr2.4:11715555-11715574 None:intergenic 35.0%
TCTTTGTAGGTAGCAATGAA+AGG + chr2.4:11715864-11715883 None:intergenic 35.0%
TGGGTGTATACAGTTCAATA+TGG - chr2.4:11715781-11715800 MS.gene31572:intron 35.0%
TGGTACCTCTAATAACCATA+TGG - chr2.4:11715250-11715269 MS.gene31572:intron 35.0%
TTGGTTCCAAAAGATTGAGT+AGG + chr2.4:11715574-11715593 None:intergenic 35.0%
! CACACAAATTTGGAACACAA+AGG - chr2.4:11715732-11715751 MS.gene31572:intron 35.0%
! CATTCACATACACATTGGTT+TGG + chr2.4:11715491-11715510 None:intergenic 35.0%
! GTCATCAACTTATTTGGGTT+AGG - chr2.4:11716015-11716034 MS.gene31572:CDS 35.0%
! TTCACACCTACTCAATCTTT+TGG - chr2.4:11715565-11715584 MS.gene31572:intron 35.0%
!! ATGTGAATGGTGTTGGTAAT+AGG - chr2.4:11715502-11715521 MS.gene31572:intron 35.0%
!! TGTGAATGGTGTTGGTAATA+GGG - chr2.4:11715503-11715522 MS.gene31572:intron 35.0%
AACTGTATACACCCATTGCT+TGG + chr2.4:11715776-11715795 None:intergenic 40.0%
ACGAACACATTCAAGTGGTA+TGG + chr2.4:11716090-11716109 None:intergenic 40.0%
ACTAGGATGTCTTGTCTCTT+GGG - chr2.4:11714288-11714307 MS.gene31572:CDS 40.0%
AGTGGATGAGACACCAATAA+GGG - chr2.4:11715707-11715726 MS.gene31572:intron 40.0%
CCTATGGTTTGATCCATCTA+AGG - chr2.4:11715539-11715558 MS.gene31572:intron 40.0%
CCTTAGATGGATCAAACCAT+AGG + chr2.4:11715542-11715561 None:intergenic 40.0%
CTATGAATTATTGGTACGGG+TGG + chr2.4:11715319-11715338 None:intergenic 40.0%
GGAGTCACATTCACTCATAA+AGG + chr2.4:11715298-11715317 None:intergenic 40.0%
GGATGTGGATGCAAATTCAA+TGG + chr2.4:11715159-11715178 None:intergenic 40.0%
GTGTTGTAGATGTCATCTGA+AGG - chr2.4:11715402-11715421 MS.gene31572:intron 40.0%
TATGGAAATATTGCAGGTGC+TGG - chr2.4:11714673-11714692 MS.gene31572:CDS 40.0%
TTCCCAAAAGACCAAGCAAT+GGG - chr2.4:11715762-11715781 MS.gene31572:intron 40.0%
! ATGGACCATTTTGTCCATGA+AGG - chr2.4:11714387-11714406 MS.gene31572:CDS 40.0%
! TAGTGGATGAGACACCAATA+AGG - chr2.4:11715706-11715725 MS.gene31572:intron 40.0%
! TTGGGTTAGGGCTAATCATA+TGG - chr2.4:11716028-11716047 MS.gene31572:CDS 40.0%
!! ACATTGGTTTGGACTGAGTA+AGG + chr2.4:11715480-11715499 None:intergenic 40.0%
!! ATTGCTTGGTCTTTTGGGAA+GGG + chr2.4:11715762-11715781 None:intergenic 40.0%
ACACATTCAAGTGGTATGGC+CGG + chr2.4:11716086-11716105 None:intergenic 45.0%
CTTCCCAAAAGACCAAGCAA+TGG - chr2.4:11715761-11715780 MS.gene31572:intron 45.0%
GACTAGGATGTCTTGTCTCT+TGG - chr2.4:11714287-11714306 MS.gene31572:CDS 45.0%
GACTGTGCATCTCAAACTTG+TGG - chr2.4:11714732-11714751 MS.gene31572:intron 45.0%
GGGAGCAAAGACTTAACCTA+TGG - chr2.4:11715523-11715542 MS.gene31572:intron 45.0%
GTGCATCTCAAACTTGTGGA+GGG - chr2.4:11714736-11714755 MS.gene31572:intron 45.0%
GTGCTTACACTACTTGACGT+TGG + chr2.4:11715593-11715612 None:intergenic 45.0%
GTGGTCGTGTGAAAACAGAT+TGG - chr2.4:11715829-11715848 MS.gene31572:intron 45.0%
TGTGCATCTCAAACTTGTGG+AGG - chr2.4:11714735-11714754 MS.gene31572:intron 45.0%
TTTGAGGAACTCTTCCAACC+TGG - chr2.4:11714357-11714376 MS.gene31572:CDS 45.0%
! TGGTGACGAACACATTCAAG+TGG + chr2.4:11716095-11716114 None:intergenic 45.0%
!! ACACCCATTGCTTGGTCTTT+TGG + chr2.4:11715768-11715787 None:intergenic 45.0%
!! CACCCATTGCTTGGTCTTTT+GGG + chr2.4:11715767-11715786 None:intergenic 45.0%
!! CATTGCTTGGTCTTTTGGGA+AGG + chr2.4:11715763-11715782 None:intergenic 45.0%
CACATTCAAGTGGTATGGCC+GGG + chr2.4:11716085-11716104 None:intergenic 50.0%
GACTGAGTAAGGTTCACCAG+TGG + chr2.4:11715469-11715488 None:intergenic 50.0%
GATGATTGGGCAACACAAGG+TGG - chr2.4:11715810-11715829 MS.gene31572:intron 50.0%
GCAGATGATTGGGCAACACA+AGG - chr2.4:11715807-11715826 MS.gene31572:intron 50.0%
!! GAGTTTTTGGGCAACACCAC+TGG - chr2.4:11715450-11715469 MS.gene31572:intron 50.0%
AAATGGTCCATAGCCCAGCC+AGG + chr2.4:11714378-11714397 None:intergenic 55.0%
AGGAACTCTTCCAACCTGGC+TGG - chr2.4:11714361-11714380 MS.gene31572:CDS 55.0%
CTTGTGGAGGGTGATTCTGC+TGG - chr2.4:11714748-11714767 MS.gene31572:intron 55.0%
GGAACTCTTCCAACCTGGCT+GGG - chr2.4:11714362-11714381 MS.gene31572:CDS 55.0%
! ACTATTGCGCCGATACCGCT+AGG - chr2.4:11716057-11716076 MS.gene31572:CDS 55.0%
CTTCCAACCTGGCTGGGCTA+TGG - chr2.4:11714368-11714387 MS.gene31572:CDS 60.0%
TGGTATGGCCGGGAACCTAG+CGG + chr2.4:11716075-11716094 None:intergenic 60.0%
CGCCGATACCGCTAGGTTCC+CGG - chr2.4:11716064-11716083 MS.gene31572:CDS 65.0%
GGCCGGGAACCTAGCGGTAT+CGG + chr2.4:11716069-11716088 None:intergenic 65.0%
GGTCCATAGCCCAGCCAGGT+TGG + chr2.4:11714374-11714393 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 11714285 11716121 11714285 ID=MS.gene31572
chr2.4 mRNA 11714285 11716121 11714285 ID=MS.gene31572.t1;Parent=MS.gene31572
chr2.4 exon 11715962 11716121 11715962 ID=MS.gene31572.t1.exon1;Parent=MS.gene31572.t1
chr2.4 CDS 11715962 11716121 11715962 ID=cds.MS.gene31572.t1;Parent=MS.gene31572.t1
chr2.4 exon 11715617 11715717 11715617 ID=MS.gene31572.t1.exon2;Parent=MS.gene31572.t1
chr2.4 CDS 11715617 11715717 11715617 ID=cds.MS.gene31572.t1;Parent=MS.gene31572.t1
chr2.4 exon 11714802 11714995 11714802 ID=MS.gene31572.t1.exon3;Parent=MS.gene31572.t1
chr2.4 CDS 11714802 11714995 11714802 ID=cds.MS.gene31572.t1;Parent=MS.gene31572.t1
chr2.4 exon 11714285 11714705 11714285 ID=MS.gene31572.t1.exon4;Parent=MS.gene31572.t1
chr2.4 CDS 11714285 11714705 11714285 ID=cds.MS.gene31572.t1;Parent=MS.gene31572.t1
Gene Sequence

>MS.gene31572

ATGACTAGGATGTCTTGTCTCTTGGGACTTTCTTTGTGTTTTTTGTTTGTTGGGCTAGTTGCTTCTTCTAAATTTGAGGAACTCTTCCAACCTGGCTGGGCTATGGACCATTTTGTCCATGAAGGAGATTTGCTTAAACTCAAACTTGACAATTATTCTGGTAACTAACTAATTTAACATTTGTTTTTTTAAGGTTGCAAGAATGAGACATTATTAAAAAAAAAAAACATTTTTGTATTAAGTATTGTTTCCTGAAACTGAATGTCCTTTTAAGTTTAATTATGGATTATTTAAAGCTTAGATCTTATTGTTTATAGATGGTTTAATAAATTTTATAATGATGTACATTCATGATTAATTATTTATTTGTGTTACTTATAGTAAAAAATATGGAAATATTGCAGGTGCTGGATTTCAATCTAAGAGCAAGTATATGTTTGGGAAAGTGACTGTGCATCTCAAACTTGTGGAGGGTGATTCTGCTGGAACTGTAACTGCTTTCTATGTAAGCAAAAATATTATAAATATAAATCAGCTTTTACTTTAATTTGCTCTTAGTTCTCTTGTTAATATGTTGATATGAAATTTAATAGTATTATTAGTACTCACTAGTGCATAAATATATTACATTTTGTTAAGAAACAATTATCACAGTGTATCATTAACCAGAATGTGTTCAATACAATCGGATATATCATCCGATATTTGGACATAAACAAACTCAATATTAGAGTTTACATAAAAATTCATATATAAATTTATAATGTGCATAAATACTACTCAATACATTGAACATTTGTTAAATGTGACACCTAATAGACTAAGACTGCTAACAGAGCTATTGAGTGCCTATCTACCTACTTGTTTTTAACCATTGAATTTGCATCCACATCCAATTGATTCTTGCATTCATTATCTTTGTCGCTATATCAATCTAGCAACTAATTTTCTTGATTGCAAATATGTGGTACCTCTAATAACCATATGGAATTTATTCCACATTTTATTGCCCTTTATGAGTGAATGTGACTCCACCCGTACCAATAATTCATAGTATCTAATAAAAGTCATAATAATTGATGGTATCTAACTTTGAAATTTGATTCTTATAATTTTTGTGTTGTAGATGTCATCTGAAGGCCCAACTCATAATGAATTTGATTTTGAGTTTTTGGGCAACACCACTGGTGAACCTTACTCAGTCCAAACCAATGTGTATGTGAATGGTGTTGGTAATAGGGAGCAAAGACTTAACCTATGGTTTGATCCATCTAAGGATTTTCACACCTACTCAATCTTTTGGAACCAACGTCAAGTAGTGTAAGCACCTACATTATCCATATGTTAATAATTTAATCTAATAAACTTTAATTAATTATTATTCTAACATATTTTATACATGTGAATATTGTGTAGGTTTCTAGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATTCCCTTCCCAAAAGACCAAGCAATGGGTGTATACAGTTCAATATGGAATGCAGATGATTGGGCAACACAAGGTGGTCGTGTGAAAACAGATTGGACTCATGCACCTTTCATTGCTACCTACAAAGATTTTGAGATTAATGCTTGTGAAGTTGCTGTGCCAGTGACATCAAATGATAATGCTAAGAAATGTGCTAGTAGTGAAGATAAGAAATACTGGTGGGATGAACCAATGTTGAATGAGCTCACTATTCATCAGAGTCATCAACTTATTTGGGTTAGGGCTAATCATATGGTTTATGACTATTGCGCCGATACCGCTAGGTTCCCGGCCATACCACTTGAATGTGTTCGTCACCACCACTAG
Protein sequence

>MS.gene31572.t1

MTRMSCLLGLSLCFLFVGLVASSKFEELFQPGWAMDHFVHEGDLLKLKLDNYSGAGFQSKSKYMFGKVTVHLKLVEGDSAGTVTAFYMSSEGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWTHAPFIATYKDFEINACEVAVPVTSNDNAKKCASSEDKKYWWDEPMLNELTIHQSHQLIWVRANHMVYDYCADTARFPAIPLECVRHHH