AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058720.t1 MTR_7g079850 98.239 284 5 0 1 284 1 284 0.0 561
MS.gene058720.t1 MTR_1g111390 40.351 228 109 3 74 281 6 226 1.28e-51 169
MS.gene058720.t1 MTR_1g046730 41.232 211 117 2 76 279 152 362 1.82e-41 147
MS.gene058720.t1 MTR_5g009810 36.019 211 114 5 82 279 145 347 2.75e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058720.t1 AT5G36290 73.852 283 62 5 13 283 11 293 2.33e-132 377
MS.gene058720.t1 AT5G36290 73.852 283 62 5 13 283 11 293 2.33e-132 377
MS.gene058720.t1 AT1G68650 43.946 223 111 2 72 281 4 225 9.43e-56 179
MS.gene058720.t1 AT1G25520 41.991 231 100 2 72 278 4 224 2.98e-55 178
MS.gene058720.t1 AT4G13590 40.741 216 111 4 76 279 146 356 1.20e-41 147
MS.gene058720.t1 AT4G13590 40.741 216 111 4 76 279 146 356 1.32e-41 147
MS.gene058720.t1 AT1G64150 34.559 272 143 8 27 274 101 361 5.66e-25 102

Find 67 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTTCTGTGAAGATTT+TGG 0.120668 7.4:+26272571 None:intergenic
TGCTTCTTTGAAATCAAATT+TGG 0.183884 7.4:+26272985 None:intergenic
TCTCTTAGCTTGGATTCTTC+TGG 0.261688 7.4:-26274183 MS.gene058720:CDS
ATTTATTATAGCAGCTCTTA+TGG 0.317879 7.4:-26273281 MS.gene058720:CDS
TTTATATTCATAGGATTCTC+TGG 0.357110 7.4:-26274381 MS.gene058720:intron
AGCTTGGATTCTTCTGGTGT+TGG 0.387172 7.4:-26274177 MS.gene058720:CDS
TTCGGTCATTTCTCTTAGCT+TGG 0.388909 7.4:-26274193 MS.gene058720:CDS
TACGACTGCTGTACATTGCT+TGG 0.393896 7.4:-26272603 MS.gene058720:CDS
CCTAAGTCAATTGTCTTGTC+TGG 0.404108 7.4:-26273247 MS.gene058720:CDS
TTACTGCAATTGTCGCAATC+TGG 0.411024 7.4:+26271884 None:intergenic
GTAGCAGCTGGGGCCACCAT+AGG 0.426028 7.4:-26271670 MS.gene058720:CDS
GTCCATTAGGTACTTTCTAC+AGG 0.433115 7.4:-26273024 MS.gene058720:intron
GACAAGGGAAAACTTCATTT+CGG 0.446559 7.4:-26272067 MS.gene058720:CDS
ATCTTCACAGAAGAAAGAAA+TGG 0.475060 7.4:-26272566 MS.gene058720:CDS
GTCGGTGGTCTTCTCTTCCT+AGG 0.477783 7.4:-26271568 MS.gene058720:CDS
GACAGTGGCTACAGAGCGTT+GGG 0.479778 7.4:+26271588 None:intergenic
AATGCAATCGGAGTAGCAGC+TGG 0.484261 7.4:-26271682 MS.gene058720:CDS
ACTTACCGTCATTATAATCA+AGG 0.489547 7.4:+26273213 None:intergenic
ATTCTCTGGCTCACGACGAC+AGG 0.492028 7.4:-26274367 MS.gene058720:CDS
GCACTACGATTCAACATCAA+TGG 0.507707 7.4:-26274523 MS.gene058720:CDS
CACGACGACAGGCAAGAATC+CGG 0.512240 7.4:-26274356 MS.gene058720:CDS
GCGTTGAATGATATAGAGAA+TGG 0.513923 7.4:-26274216 MS.gene058720:CDS
CATACAAATAGTGCTGCTAC+AGG 0.516828 7.4:-26272964 MS.gene058720:intron
TAGCAGCTGGGGCCACCATA+GGG 0.516894 7.4:-26271669 MS.gene058720:CDS
CGTCGTTCAAACCTTCGCTC+AGG 0.518400 7.4:-26274467 MS.gene058720:intron
GAGGAAGCATGCTGGCATCT+AGG 0.521221 7.4:-26271615 MS.gene058720:CDS
ATGAAGACAAAGAAAAGCCT+AGG 0.528533 7.4:+26271551 None:intergenic
ATGTACCTCAGTGGCAGTGG+TGG 0.534768 7.4:-26271638 MS.gene058720:CDS
CAATTGTCGCAATCTGGCTA+CGG 0.543283 7.4:+26271890 None:intergenic
ATGCAATCGGAGTAGCAGCT+GGG 0.543597 7.4:-26271681 MS.gene058720:CDS
CGACAGTGGCTACAGAGCGT+TGG 0.546302 7.4:+26271587 None:intergenic
TCCGGTGGATCTGTGGATCT+CGG 0.548999 7.4:-26274338 MS.gene058720:CDS
TTTAACATTCCTTGCTGAGT+GGG 0.550817 7.4:-26271917 MS.gene058720:CDS
GCAGAGGAGAAGAACGAAAA+CGG 0.558746 7.4:+26274492 None:intergenic
AGTGGTGGGAGGAAGCATGC+TGG 0.559364 7.4:-26271623 MS.gene058720:CDS
GCAAGAATCCGGTGGATCTG+TGG 0.559609 7.4:-26274345 MS.gene058720:CDS
ATCAATGATTCTCGTTAGTG+AGG 0.560283 7.4:-26274127 MS.gene058720:intron
CCAGACAAGACAATTGACTT+AGG 0.562706 7.4:+26273247 None:intergenic
AATATGTACCTCAGTGGCAG+TGG 0.565729 7.4:-26271641 MS.gene058720:CDS
CAACGCTCTGTAGCCACTGT+CGG 0.569412 7.4:-26271586 MS.gene058720:CDS
TAGGTACTTTCTACAGGACT+AGG 0.570677 7.4:-26273018 MS.gene058720:CDS
GGTACATATTGTGTGCCCTA+TGG 0.570961 7.4:+26271654 None:intergenic
GAATGATATAGAGAATGGTT+CGG 0.572567 7.4:-26274211 MS.gene058720:CDS
AGCACTTGTATTAATCTAGA+GGG 0.573165 7.4:+26271518 None:intergenic
AGGTTTGAACGACGAAGCAG+AGG 0.579424 7.4:+26274476 None:intergenic
TACGGTCACCCCACTCAGCA+AGG 0.586363 7.4:+26271908 None:intergenic
ACATATTGTGTGCCCTATGG+TGG 0.588291 7.4:+26271657 None:intergenic
ACCTCAGTGGCAGTGGTGGG+AGG 0.588861 7.4:-26271634 MS.gene058720:CDS
CAGCACTTGTATTAATCTAG+AGG 0.589972 7.4:+26271517 None:intergenic
ACCGAGATCCACAGATCCAC+CGG 0.590630 7.4:+26274337 None:intergenic
AAGTGCCTTGATTATAATGA+CGG 0.591556 7.4:-26273218 MS.gene058720:intron
CACTTGTATTAATCTAGAGG+GGG 0.603175 7.4:+26271520 None:intergenic
TACTTTCTACAGGACTAGGA+AGG 0.605041 7.4:-26273014 MS.gene058720:CDS
TTAACATTCCTTGCTGAGTG+GGG 0.606715 7.4:-26271916 MS.gene058720:CDS
CGCTCTGTAGCCACTGTCGG+TGG 0.611670 7.4:-26271583 MS.gene058720:CDS
AATGAAGCTGACCTGAGCGA+AGG 0.623925 7.4:+26274456 None:intergenic
TGTACCTCAGTGGCAGTGGT+GGG 0.630607 7.4:-26271637 MS.gene058720:CDS
TCCTCCCACCACTGCCACTG+AGG 0.633636 7.4:+26271633 None:intergenic
GAAGAGAAGACCACCGACAG+TGG 0.640727 7.4:+26271573 None:intergenic
TGCAATCGGAGTAGCAGCTG+GGG 0.642034 7.4:-26271680 MS.gene058720:CDS
GCACTTGTATTAATCTAGAG+GGG 0.643990 7.4:+26271519 None:intergenic
AAGGGAAAACTTCATTTCGG+CGG 0.657157 7.4:-26272064 MS.gene058720:CDS
TAGAGATGCTTACTTTGGCG+CGG 0.657983 7.4:+26274312 None:intergenic
ACTTGTATTAATCTAGAGGG+GGG 0.683100 7.4:+26271521 None:intergenic
GACGACAGGCAAGAATCCGG+TGG 0.690791 7.4:-26274353 MS.gene058720:CDS
GATGTTGAATCGTAGTGCCA+TGG 0.692820 7.4:+26274528 None:intergenic
GCACACAATATGTACCTCAG+TGG 0.739190 7.4:-26271647 MS.gene058720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAGTATTATAAATAAAATT+AGG + chr7.4:26271986-26272005 None:intergenic 10.0%
!! TACAAATAATCAAATATTTA+GGG + chr7.4:26274218-26274237 None:intergenic 10.0%
!! GTACAAATAATCAAATATTT+AGG + chr7.4:26274219-26274238 None:intergenic 15.0%
!!! ATACTAATTGTTATTTCAAT+TGG - chr7.4:26272552-26272571 MS.gene058720:intron 15.0%
!!! TACTAATTGTTATTTCAATT+GGG - chr7.4:26272553-26272572 MS.gene058720:intron 15.0%
!!! TTTGTACAAACTTTTTATAA+CGG + chr7.4:26272427-26272446 None:intergenic 15.0%
!!! TTTTATAATTTTATGTGACT+AGG - chr7.4:26272613-26272632 MS.gene058720:CDS 15.0%
!! ATGTGTTTGTTTATATTCAT+AGG - chr7.4:26271664-26271683 MS.gene058720:CDS 20.0%
!! CAAATTATGCAATAAAATCA+AGG + chr7.4:26272037-26272056 None:intergenic 20.0%
!! CTAATAGTTAAATATCAGTT+AGG + chr7.4:26272353-26272372 None:intergenic 20.0%
!! GAATATAAACAAACACATTA+CGG + chr7.4:26271662-26271681 None:intergenic 20.0%
!! TAACTGATAAAATAGTTGAT+AGG - chr7.4:26272241-26272260 MS.gene058720:intron 20.0%
!! TACTATAATTAACATTGTTC+TGG - chr7.4:26273187-26273206 MS.gene058720:intron 20.0%
!!! AAAAAGCATTTATAGAAAAG+AGG + chr7.4:26272597-26272616 None:intergenic 20.0%
!!! ACTAATTGTTATTTCAATTG+GGG - chr7.4:26272554-26272573 MS.gene058720:intron 20.0%
!!! CATTCATTATCTTGTTTTTA+TGG - chr7.4:26273330-26273349 MS.gene058720:intron 20.0%
!!! TTTTAGTTGTAAACTATGAT+AGG - chr7.4:26272081-26272100 MS.gene058720:CDS 20.0%
! ACAACTAAAAAATTCTTCAC+TGG + chr7.4:26272071-26272090 None:intergenic 25.0%
! AGACAAAGCTATAGTATAAA+TGG + chr7.4:26273572-26273591 None:intergenic 25.0%
! ATTCAAATGAACAAAAAGAG+AGG + chr7.4:26271769-26271788 None:intergenic 25.0%
! ATTTATTATAGCAGCTCTTA+TGG - chr7.4:26272773-26272792 MS.gene058720:intron 25.0%
! ATTTGAATTGTTCATTCAAC+TGG - chr7.4:26271781-26271800 MS.gene058720:intron 25.0%
! CAAGATAATGAATGAAGATT+TGG + chr7.4:26273324-26273343 None:intergenic 25.0%
! GTAGTGTTTGGTAAAATTAT+CGG - chr7.4:26272307-26272326 MS.gene058720:intron 25.0%
! TATAGCATGTTTACAATTAC+AGG + chr7.4:26273847-26273866 None:intergenic 25.0%
! TGAATTGAATTTGTAGTGTT+TGG - chr7.4:26272295-26272314 MS.gene058720:intron 25.0%
! TTAAAGAAAAGAGTCAAACT+TGG - chr7.4:26273911-26273930 MS.gene058720:intron 25.0%
! TTTATATTCATAGGATTCTC+TGG - chr7.4:26271673-26271692 MS.gene058720:CDS 25.0%
!! AGAATTTGTTCTTGTTAACT+AGG - chr7.4:26273943-26273962 MS.gene058720:intron 25.0%
!! GTCATTACCTCTAAAAATAT+GGG + chr7.4:26274037-26274056 None:intergenic 25.0%
!! TAATATAGAGCACTATTTCT+TGG - chr7.4:26272956-26272975 MS.gene058720:intron 25.0%
!! TGTCATTACCTCTAAAAATA+TGG + chr7.4:26274038-26274057 None:intergenic 25.0%
!!! TGCTTCTTTGAAATCAAATT+TGG + chr7.4:26273072-26273091 None:intergenic 25.0%
AAGTGCCTTGATTATAATGA+CGG - chr7.4:26272836-26272855 MS.gene058720:intron 30.0%
AAGTTCTTATGAGCTTGTAA+AGG - chr7.4:26272449-26272468 MS.gene058720:intron 30.0%
ACTTACCGTCATTATAATCA+AGG + chr7.4:26272844-26272863 None:intergenic 30.0%
ATCTTCACAGAAGAAAGAAA+TGG - chr7.4:26273488-26273507 MS.gene058720:intron 30.0%
ATTAATGAGAACAGAAAAGC+AGG + chr7.4:26272895-26272914 None:intergenic 30.0%
GAATGATATAGAGAATGGTT+CGG - chr7.4:26271843-26271862 MS.gene058720:intron 30.0%
GCAACACATAAAAATGCAAT+CGG - chr7.4:26274360-26274379 MS.gene058720:CDS 30.0%
GCGTATGACAAAAAAATGAT+AGG + chr7.4:26273408-26273427 None:intergenic 30.0%
GTTATTTGTTTGTGTCCATT+AGG - chr7.4:26273017-26273036 MS.gene058720:CDS 30.0%
TAACCACCGACAAAAATTAA+AGG + chr7.4:26274277-26274296 None:intergenic 30.0%
TATAAACAAACACATTACGG+CGG + chr7.4:26271659-26271678 None:intergenic 30.0%
TCAAGTTCCTTTATTCTAGA+TGG - chr7.4:26273621-26273640 MS.gene058720:intron 30.0%
TCTATTCTATGTTTGCGTTA+TGG - chr7.4:26272706-26272725 MS.gene058720:intron 30.0%
TTTATGGAAAGAAAACGACT+AGG - chr7.4:26272182-26272201 MS.gene058720:intron 30.0%
! AAAAGTACATGGAGTTAAAC+AGG + chr7.4:26273217-26273236 None:intergenic 30.0%
! AAACGTGTAACAAAAGTACA+TGG + chr7.4:26273228-26273247 None:intergenic 30.0%
! AAATGTGCCATCTAGAATAA+AGG + chr7.4:26273631-26273650 None:intergenic 30.0%
! ATCTAGAATAAAGGAACTTG+AGG + chr7.4:26273622-26273641 None:intergenic 30.0%
! CAGTTCTTTATCTTTTCTTC+GGG - chr7.4:26273427-26273446 MS.gene058720:intron 30.0%
! GCAGTTCTTTATCTTTTCTT+CGG - chr7.4:26273426-26273445 MS.gene058720:intron 30.0%
! TAGGTTGAAGAAAAACTTGA+AGG - chr7.4:26273962-26273981 MS.gene058720:intron 30.0%
! TCTTTCTTCTGTGAAGATTT+TGG + chr7.4:26273486-26273505 None:intergenic 30.0%
! TGCTTTTCTGTTCTCATTAA+TGG - chr7.4:26272894-26272913 MS.gene058720:intron 30.0%
!! ATTGTTGATGACACATTAGT+TGG - chr7.4:26273882-26273901 MS.gene058720:intron 30.0%
!!! AACCTTTTTTCATGCTAGAT+TGG - chr7.4:26272741-26272760 MS.gene058720:intron 30.0%
!!! ACCTTTTTTCATGCTAGATT+GGG - chr7.4:26272742-26272761 MS.gene058720:intron 30.0%
!!! TTGTACACCCATATTTTTAG+AGG - chr7.4:26274027-26274046 MS.gene058720:intron 30.0%
!!! TTTTTTACATTGTGCTGTGA+TGG - chr7.4:26272921-26272940 MS.gene058720:intron 30.0%
AAAAACTTGAAGGTGGACAA+GGG - chr7.4:26273972-26273991 MS.gene058720:intron 35.0%
AAATGGAGAGAATTGAACTG+TGG + chr7.4:26273555-26273574 None:intergenic 35.0%
AACAGTTACTGTATTTGTGC+TGG - chr7.4:26273655-26273674 MS.gene058720:intron 35.0%
ACATATTTAAACAGCCATCG+AGG + chr7.4:26273709-26273728 None:intergenic 35.0%
AGCATGACGAATTTAGTTAG+AGG - chr7.4:26272104-26272123 MS.gene058720:intron 35.0%
ATAAACAAACACATTACGGC+GGG + chr7.4:26271658-26271677 None:intergenic 35.0%
ATCAATGATTCTCGTTAGTG+AGG - chr7.4:26271927-26271946 MS.gene058720:CDS 35.0%
ATGAAGACAAAGAAAAGCCT+AGG + chr7.4:26274506-26274525 None:intergenic 35.0%
ATTATAGTAGCTTTCGTCAC+AGG + chr7.4:26273176-26273195 None:intergenic 35.0%
CTGGAGACATAAAATCGATA+AGG + chr7.4:26274254-26274273 None:intergenic 35.0%
GACAAGGGAAAACTTCATTT+CGG - chr7.4:26273987-26274006 MS.gene058720:intron 35.0%
GCGTTGAATGATATAGAGAA+TGG - chr7.4:26271838-26271857 MS.gene058720:intron 35.0%
GTTGAAGAAAAACTTGAAGG+TGG - chr7.4:26273965-26273984 MS.gene058720:intron 35.0%
TAAACATGCTATAGCATGCA+GGG - chr7.4:26273854-26273873 MS.gene058720:intron 35.0%
TAATATAGATGCGACTCTTC+AGG - chr7.4:26273744-26273763 MS.gene058720:intron 35.0%
TAGTTAGAGGAAGCTCAAAT+TGG - chr7.4:26272117-26272136 MS.gene058720:intron 35.0%
TGTGCATTCTGGATTCATAA+TGG - chr7.4:26273132-26273151 MS.gene058720:intron 35.0%
TTTAACATTCCTTGCTGAGT+GGG - chr7.4:26274137-26274156 MS.gene058720:CDS 35.0%
! ATCTCGATGTTGTTGATAGA+AGG + chr7.4:26272993-26273012 None:intergenic 35.0%
! TTTTAACATTCCTTGCTGAG+TGG - chr7.4:26274136-26274155 MS.gene058720:CDS 35.0%
!! ACGACTAGGTGTTATTGTTA+AGG - chr7.4:26272196-26272215 MS.gene058720:intron 35.0%
!! CGACTAGGTGTTATTGTTAA+GGG - chr7.4:26272197-26272216 MS.gene058720:intron 35.0%
!! CTATAGCTTTGTCTTTGTAC+AGG - chr7.4:26273578-26273597 MS.gene058720:intron 35.0%
!! CTCCAGCCTTTAATTTTTGT+CGG - chr7.4:26274268-26274287 MS.gene058720:intron 35.0%
!! GTGTTATTGTTAAGGGTGTT+TGG - chr7.4:26272204-26272223 MS.gene058720:intron 35.0%
!!! CCTTTTTTCATGCTAGATTG+GGG - chr7.4:26272743-26272762 MS.gene058720:intron 35.0%
AAGGGAAAACTTCATTTCGG+CGG - chr7.4:26273990-26274009 MS.gene058720:intron 40.0%
ATAATGGCTGAGTATGCACT+CGG - chr7.4:26273148-26273167 MS.gene058720:intron 40.0%
ATGAAAACGCGTAGAATGGA+AGG + chr7.4:26271626-26271645 None:intergenic 40.0%
ATGCATGAAAACGCGTAGAA+TGG + chr7.4:26271630-26271649 None:intergenic 40.0%
CACCGACAAAAATTAAAGGC+TGG + chr7.4:26274273-26274292 None:intergenic 40.0%
CCCCAATCTAGCATGAAAAA+AGG + chr7.4:26272746-26272765 None:intergenic 40.0%
CCTAAGTCAATTGTCTTGTC+TGG - chr7.4:26272807-26272826 MS.gene058720:intron 40.0%
GAAAAACTTGAAGGTGGACA+AGG - chr7.4:26273971-26273990 MS.gene058720:intron 40.0%
GAGGTTAGAGATGCTTACTT+TGG + chr7.4:26271750-26271769 None:intergenic 40.0%
GAGTCAATGTGACGCATTTA+TGG - chr7.4:26272166-26272185 MS.gene058720:intron 40.0%
GCACTACGATTCAACATCAA+TGG - chr7.4:26271531-26271550 MS.gene058720:CDS 40.0%
GCTGCTACAGGTAAACTTAT+CGG - chr7.4:26273102-26273121 MS.gene058720:intron 40.0%
GGGTGTTTGGTAAAAAGTAG+TGG - chr7.4:26272217-26272236 MS.gene058720:intron 40.0%
GTAAACATGCTATAGCATGC+AGG - chr7.4:26273853-26273872 MS.gene058720:intron 40.0%
GTCCATTAGGTACTTTCTAC+AGG - chr7.4:26273030-26273049 MS.gene058720:intron 40.0%
TAAACAAACACATTACGGCG+GGG + chr7.4:26271657-26271676 None:intergenic 40.0%
TACTTTCTACAGGACTAGGA+AGG - chr7.4:26273040-26273059 MS.gene058720:intron 40.0%
TAGGTACTTTCTACAGGACT+AGG - chr7.4:26273036-26273055 MS.gene058720:intron 40.0%
TGAAAACGCGTAGAATGGAA+GGG + chr7.4:26271625-26271644 None:intergenic 40.0%
TTAACATTCCTTGCTGAGTG+GGG - chr7.4:26274138-26274157 MS.gene058720:CDS 40.0%
TTAATTGAGCTCTGCTCTCA+TGG + chr7.4:26273821-26273840 None:intergenic 40.0%
TTACTGCAATTGTCGCAATC+TGG + chr7.4:26274173-26274192 None:intergenic 40.0%
TTCGGTCATTTCTCTTAGCT+TGG - chr7.4:26271861-26271880 MS.gene058720:intron 40.0%
TTCTATCTATGCCTTGCTTC+TGG - chr7.4:26273275-26273294 MS.gene058720:CDS 40.0%
! ATCAGTGAAAGTGTGCGATA+CGG - chr7.4:26272144-26272163 MS.gene058720:intron 40.0%
! CATACAAATAGTGCTGCTAC+AGG - chr7.4:26273090-26273109 MS.gene058720:intron 40.0%
! CCAGACAAGACAATTGACTT+AGG + chr7.4:26272810-26272829 None:intergenic 40.0%
! TCTCTTAGCTTGGATTCTTC+TGG - chr7.4:26271871-26271890 MS.gene058720:intron 40.0%
! TGCGAGTGATTTTTGTGAAC+AGG - chr7.4:26271813-26271832 MS.gene058720:intron 40.0%
!! CAGCCTTTAATTTTTGTCGG+TGG - chr7.4:26274271-26274290 MS.gene058720:intron 40.0%
!! GTCCTGTAGAAAGTACCTAA+TGG + chr7.4:26273035-26273054 None:intergenic 40.0%
!! TAGGGTGTTGAGTTAAGAGA+TGG + chr7.4:26274200-26274219 None:intergenic 40.0%
AATATGTACCTCAGTGGCAG+TGG - chr7.4:26274413-26274432 MS.gene058720:intron 45.0%
ACATATTGTGTGCCCTATGG+TGG + chr7.4:26274400-26274419 None:intergenic 45.0%
AGCTTGGATTCTTCTGGTGT+TGG - chr7.4:26271877-26271896 MS.gene058720:intron 45.0%
AGTTTCCTTGTTACTCCACC+TGG - chr7.4:26273788-26273807 MS.gene058720:intron 45.0%
ATCAGTGAACTCCAGAAGCA+AGG + chr7.4:26273289-26273308 None:intergenic 45.0%
CAATTGTCGCAATCTGGCTA+CGG + chr7.4:26274167-26274186 None:intergenic 45.0%
CAGCTGCACAAGGAAATTGA+AGG + chr7.4:26274340-26274359 None:intergenic 45.0%
CTTCAATTTCCTTGTGCAGC+TGG - chr7.4:26274338-26274357 MS.gene058720:CDS 45.0%
GCACACAATATGTACCTCAG+TGG - chr7.4:26274407-26274426 MS.gene058720:intron 45.0%
GCAGAGGAGAAGAACGAAAA+CGG + chr7.4:26271565-26271584 None:intergenic 45.0%
GGTACATATTGTGTGCCCTA+TGG + chr7.4:26274403-26274422 None:intergenic 45.0%
TACGACTGCTGTACATTGCT+TGG - chr7.4:26273451-26273470 MS.gene058720:intron 45.0%
TAGAGATGCTTACTTTGGCG+CGG + chr7.4:26271745-26271764 None:intergenic 45.0%
! ATACTGACTAGTGACCTCGA+TGG - chr7.4:26273692-26273711 MS.gene058720:intron 45.0%
!!! GTGCTGTGATGGACTGATTT+TGG - chr7.4:26272932-26272951 MS.gene058720:intron 45.0%
AATGAAGCTGACCTGAGCGA+AGG + chr7.4:26271601-26271620 None:intergenic 50.0%
AATGCAATCGGAGTAGCAGC+TGG - chr7.4:26274372-26274391 MS.gene058720:intron 50.0%
AGGTTTGAACGACGAAGCAG+AGG + chr7.4:26271581-26271600 None:intergenic 50.0%
AGTGACCAGGTGGAGTAACA+AGG + chr7.4:26273796-26273815 None:intergenic 50.0%
ATGCAATCGGAGTAGCAGCT+GGG - chr7.4:26274373-26274392 MS.gene058720:intron 50.0%
TATGTGTTGCCAGCTGCACA+AGG + chr7.4:26274350-26274369 None:intergenic 50.0%
TCGGCGATACTTGTGCATTC+TGG - chr7.4:26273121-26273140 MS.gene058720:intron 50.0%
ACCGAGATCCACAGATCCAC+CGG + chr7.4:26271720-26271739 None:intergenic 55.0%
ATGTACCTCAGTGGCAGTGG+TGG - chr7.4:26274416-26274435 MS.gene058720:intron 55.0%
CAACGCTCTGTAGCCACTGT+CGG - chr7.4:26274468-26274487 MS.gene058720:CDS 55.0%
CACGACGACAGGCAAGAATC+CGG - chr7.4:26271698-26271717 MS.gene058720:CDS 55.0%
CGTCGTTCAAACCTTCGCTC+AGG - chr7.4:26271587-26271606 MS.gene058720:CDS 55.0%
GAAGAGAAGACCACCGACAG+TGG + chr7.4:26274484-26274503 None:intergenic 55.0%
GCAAGAATCCGGTGGATCTG+TGG - chr7.4:26271709-26271728 MS.gene058720:intron 55.0%
GTCGGTGGTCTTCTCTTCCT+AGG - chr7.4:26274486-26274505 MS.gene058720:CDS 55.0%
TCCGGTGGATCTGTGGATCT+CGG - chr7.4:26271716-26271735 MS.gene058720:intron 55.0%
TCTCATGGCAAGTGACCAGG+TGG + chr7.4:26273806-26273825 None:intergenic 55.0%
TGCAATCGGAGTAGCAGCTG+GGG - chr7.4:26274374-26274393 MS.gene058720:intron 55.0%
TGCTCTCATGGCAAGTGACC+AGG + chr7.4:26273809-26273828 None:intergenic 55.0%
TGTACCTCAGTGGCAGTGGT+GGG - chr7.4:26274417-26274436 MS.gene058720:intron 55.0%
! ATTCTCTGGCTCACGACGAC+AGG - chr7.4:26271687-26271706 MS.gene058720:CDS 55.0%
! GACAGTGGCTACAGAGCGTT+GGG + chr7.4:26274469-26274488 None:intergenic 55.0%
! GAGGAAGCATGCTGGCATCT+AGG - chr7.4:26274439-26274458 MS.gene058720:intron 55.0%
CGACAGTGGCTACAGAGCGT+TGG + chr7.4:26274470-26274489 None:intergenic 60.0%
GACGACAGGCAAGAATCCGG+TGG - chr7.4:26271701-26271720 MS.gene058720:intron 60.0%
TACGGTCACCCCACTCAGCA+AGG + chr7.4:26274149-26274168 None:intergenic 60.0%
TAGCAGCTGGGGCCACCATA+GGG - chr7.4:26274385-26274404 MS.gene058720:intron 60.0%
! AGTGGTGGGAGGAAGCATGC+TGG - chr7.4:26274431-26274450 MS.gene058720:intron 60.0%
CGCTCTGTAGCCACTGTCGG+TGG - chr7.4:26274471-26274490 MS.gene058720:CDS 65.0%
GTAGCAGCTGGGGCCACCAT+AGG - chr7.4:26274384-26274403 MS.gene058720:intron 65.0%
TCCTCCCACCACTGCCACTG+AGG + chr7.4:26274424-26274443 None:intergenic 65.0%
! ACCTCAGTGGCAGTGGTGGG+AGG - chr7.4:26274420-26274439 MS.gene058720:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 26271528 26274548 26271528 ID=MS.gene058720
chr7.4 mRNA 26271528 26274548 26271528 ID=MS.gene058720.t1;Parent=MS.gene058720
chr7.4 exon 26274468 26274548 26274468 ID=MS.gene058720.t1.exon1;Parent=MS.gene058720.t1
chr7.4 CDS 26274468 26274548 26274468 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26274325 26274390 26274325 ID=MS.gene058720.t1.exon2;Parent=MS.gene058720.t1
chr7.4 CDS 26274325 26274390 26274325 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26274128 26274241 26274128 ID=MS.gene058720.t1.exon3;Parent=MS.gene058720.t1
chr7.4 CDS 26274128 26274241 26274128 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26273219 26273317 26273219 ID=MS.gene058720.t1.exon4;Parent=MS.gene058720.t1
chr7.4 CDS 26273219 26273317 26273219 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26272965 26273037 26272965 ID=MS.gene058720.t1.exon5;Parent=MS.gene058720.t1
chr7.4 CDS 26272965 26273037 26272965 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26272561 26272646 26272561 ID=MS.gene058720.t1.exon6;Parent=MS.gene058720.t1
chr7.4 CDS 26272561 26272646 26272561 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26272028 26272111 26272028 ID=MS.gene058720.t1.exon7;Parent=MS.gene058720.t1
chr7.4 CDS 26272028 26272111 26272028 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26271888 26271947 26271888 ID=MS.gene058720.t1.exon8;Parent=MS.gene058720.t1
chr7.4 CDS 26271888 26271947 26271888 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
chr7.4 exon 26271528 26271719 26271528 ID=MS.gene058720.t1.exon9;Parent=MS.gene058720.t1
chr7.4 CDS 26271528 26271719 26271528 ID=cds.MS.gene058720.t1;Parent=MS.gene058720.t1
Gene Sequence

>MS.gene058720

ATGGCACTACGATTCAACATCAATGGAAGAATCACCGTTTTCGTTCTTCTCCTCTGCTTCGTCGTTCAAACCTTCGCTCAGGTCAGCTTCATTTCCCTTCCATTCTACGCGTTTTCATGCATCAATCCCCGCCGTAATGTGTTTGTTTATATTCATAGGATTCTCTGGCTCACGACGACAGGCAAGAATCCGGTGGATCTGTGGATCTCGGTCGCCGCGCCAAAGTAAGCATCTCTAACCTCTCTTTTTGTTCATTTGAATTGTTCATTCAACTGGAATTGAATGTGCGAGTGATTTTTGTGAACAGGTTGCGTTGAATGATATAGAGAATGGTTCGGTCATTTCTCTTAGCTTGGATTCTTCTGGTGTTGGACTCTTTGATGCATTCTTTGCTAGTTTATCAATGATTCTCGTTAGTGAGGTTAGTTTCACAAAACATTGCTCAATTTTAATTACCTAATTTTATTTATAATACTAGTTTTGTCAAGCATTATCACTTGATCTAACCTTGATTTTATTGCATAATTTGCACTATATAAACCAGTGAAGAATTTTTTAGTTGTAAACTATGATAGGAGCATGACGAATTTAGTTAGAGGAAGCTCAAATTGGTTAGATCAGTGAAAGTGTGCGATACGGAGTCAATGTGACGCATTTATGGAAAGAAAACGACTAGGTGTTATTGTTAAGGGTGTTTGGTAAAAAGTAGTGGATAACTGATAAAATAGTTGATAGGAGACGAACTTAAAGCAGATAAGCTAGTAGATTGAATTGAATTTGTAGTGTTTGGTAAAATTATCGGTTATAATATTTTCTAGCTTACCTAACTGATATTTAACTATTAGTAATCAAACTGAAGTTGATTATAGATCAGCATCTAGCTTACAGAAGCTTATCCGTTATAAAAAGTTTGTACAAAAAAAGTTCTTATGAGCTTGTAAAGGTTGAAGTTAAATGAGTGATGTTCTGAAAAAACTGAGATGCAGATGCTAATTTCTACTCAATCGTGAAATGATTGTTTAAAATACTAATTGTTATTTCAATTGGGGCAATATTCTTTAAATAACCTCTTTTCTATAAATGCTTTTTATAATTTTATGTGACTAGGCTGTAGCTATGATGTAACGAGCAATCAGATTTCTAAGAATTATTTTGTTGCTGTTGTATGTTGTATCTTTTCTATTCTATGTTTGCGTTATGGCATTTAACTGAAAACCTTTTTTCATGCTAGATTGGGGATGAGACATTTATTATAGCAGCTCTTATGGCTATGCGTCATCCTAAGTCAATTGTCTTGTCTGGTGCACTAAGTGCCTTGATTATAATGACGGTAAGTGCAACAATAATGCTTTAGTTTTAATGTTCCTGCTTTTCTGTTCTCATTAATGGATGCTTTTTTACATTGTGCTGTGATGGACTGATTTTGGCTAATATAGAGCACTATTTCTTGGTGCTCTTAACTCCTTCTATCAACAACATCGAGATTAAAGTTATTTGTTTGTGTCCATTAGGTACTTTCTACAGGACTAGGAAGGATTGTGCCAAATTTGATTTCAAAGAAGCATACAAATAGTGCTGCTACAGGTAAACTTATCGGCGATACTTGTGCATTCTGGATTCATAATGGCTGAGTATGCACTCGGCACCTGTGACGAAAGCTACTATAATTAACATTGTTCTGGTGTTCCTGTTTAACTCCATGTACTTTTGTTACACGTTTCAATATTAATTGATTTTGTTTGTTTCATTCTATCTATGCCTTGCTTCTGGAGTTCACTGATATATAATTGTTTCCAAATCTTCATTCATTATCTTGTTTTTATGGATAGTTGCTACTTTCATTTATATGTTCAAATTTTTTGTAAGATGAAGCTAAGCCTATCATTTTTTTGTCATACGCAGTTCTTTATCTTTTCTTCGGGTTACGACTGCTGTACATTGCTTGGAAATCAGATCCAAAATCTTCACAGAAGAAAGAAATGGAAGAAGTATGTCTTTAATGACTCTCTATAGTAAAATATCTGCCACAGTTCAATTCTCTCCATTTATACTATAGCTTTGTCTTTGTACAGGCATGCAACAAATGCATTGCCTCAAGTTCCTTTATTCTAGATGGCACATTTTTTTAACAGTTACTGTATTTGTGCTGGTTATAAATTCAAATATACTGACTAGTGACCTCGATGGCTGTTTAAATATGTTAATATCTTGAATCTTAATATAGATGCGACTCTTCAGGTTGCTAGTTTGTTTCTGTTATAGTTTCCTTGTTACTCCACCTGGTCACTTGCCATGAGAGCAGAGCTCAATTAAATACCTGTAATTGTAAACATGCTATAGCATGCAGGGATTCAATTGTTGATGACACATTAGTTGGTTTAGTTTAAAGAAAAGAGTCAAACTTGGTAATTGCTAAGAATTTGTTCTTGTTAACTAGGTTGAAGAAAAACTTGAAGGTGGACAAGGGAAAACTTCATTTCGGCGGTTCTTCTCAAGATTTTGTACACCCATATTTTTAGAGGTAATGACAACTCTTGCATCATTCTCTTTACTTGAAGATAATAACAATAATTTAGTAACACTTTCTTCTAATTTATGCAGTCTTTTGTTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATTGCGACAATTGCAGTAAGAAACCATCTCTTAACTCAACACCCTAAATATTTGATTATTTGTACATTTTATGCTTTCCTTATCGATTTTATGTCTCCAGCCTTTAATTTTTGTCGGTGGTTATTGTTTCTATTCTGTATTTGTTTTGTACTTTTGTTCATGACCTTCAATTTCCTTGTGCAGCTGGCAACACATAAAAATGCAATCGGAGTAGCAGCTGGGGCCACCATAGGGCACACAATATGTACCTCAGTGGCAGTGGTGGGAGGAAGCATGCTGGCATCTAGGATTTCCCAACGCTCTGTAGCCACTGTCGGTGGTCTTCTCTTCCTAGGCTTTTCTTTGTCTTCATACTTCTACCCCCCTCTAGATTAA

Protein sequence

>MS.gene058720.t1

MALRFNINGRITVFVLLLCFVVQTFAQDSLAHDDRQESGGSVDLGRRAKVALNDIENGSVISLSLDSSGVGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALIIMTVLSTGLGRIVPNLISKKHTNSAATVLYLFFGLRLLYIAWKSDPKSSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAIGVAAGATIGHTICTSVAVVGGSMLASRISQRSVATVGGLLFLGFSLSSYFYPPLD