Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31805.t1 | XP_013466362.1 | 93.3 | 343 | 23 | 0 | 1 | 343 | 28 | 370 | 1.40E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31805.t1 | Q94BN2 | 78.6 | 332 | 67 | 1 | 6 | 333 | 25 | 356 | 2.9e-153 | 542.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31805.t1 | A0A072VG69 | 93.3 | 343 | 23 | 0 | 1 | 343 | 28 | 370 | 1.0e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054120 | MS.gene31805 | 0.807855 | 4.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31805.t1 | MTR_1g028360 | 93.294 | 343 | 23 | 0 | 1 | 343 | 28 | 370 | 0.0 | 630 |
| MS.gene31805.t1 | MTR_3g091090 | 81.602 | 337 | 58 | 2 | 2 | 334 | 21 | 357 | 0.0 | 537 |
| MS.gene31805.t1 | MTR_5g034470 | 63.110 | 328 | 103 | 6 | 7 | 331 | 27 | 339 | 2.29e-153 | 434 |
| MS.gene31805.t1 | MTR_8g063940 | 62.379 | 311 | 104 | 3 | 21 | 330 | 39 | 337 | 4.59e-148 | 421 |
| MS.gene31805.t1 | MTR_5g034470 | 63.462 | 312 | 96 | 6 | 7 | 315 | 27 | 323 | 9.80e-145 | 413 |
| MS.gene31805.t1 | MTR_3g078190 | 53.821 | 301 | 105 | 5 | 33 | 328 | 41 | 312 | 2.37e-106 | 314 |
| MS.gene31805.t1 | MTR_5g006140 | 32.174 | 230 | 147 | 6 | 64 | 288 | 42 | 267 | 7.34e-32 | 122 |
| MS.gene31805.t1 | MTR_5g006140 | 32.273 | 220 | 142 | 5 | 64 | 278 | 42 | 259 | 1.70e-31 | 119 |
| MS.gene31805.t1 | MTR_1g015300 | 30.992 | 242 | 160 | 5 | 61 | 297 | 46 | 285 | 1.13e-30 | 119 |
| MS.gene31805.t1 | MTR_3g104960 | 28.634 | 227 | 146 | 6 | 61 | 282 | 48 | 263 | 1.46e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 21 | 356 | 0.0 | 519 |
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 21 | 356 | 0.0 | 519 |
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 21 | 356 | 0.0 | 519 |
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 21 | 356 | 0.0 | 519 |
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 21 | 356 | 0.0 | 519 |
| MS.gene31805.t1 | AT5G53120 | 77.976 | 336 | 70 | 1 | 2 | 333 | 38 | 373 | 0.0 | 518 |
| MS.gene31805.t1 | AT5G53120 | 69.972 | 363 | 78 | 3 | 2 | 333 | 21 | 383 | 0.0 | 508 |
| MS.gene31805.t1 | AT1G23820 | 61.635 | 318 | 108 | 3 | 12 | 328 | 23 | 327 | 4.41e-151 | 428 |
| MS.gene31805.t1 | AT1G70310 | 63.607 | 305 | 99 | 2 | 25 | 328 | 40 | 333 | 2.01e-147 | 419 |
| MS.gene31805.t1 | AT1G23820 | 62.308 | 260 | 86 | 2 | 12 | 270 | 67 | 315 | 1.39e-123 | 358 |
| MS.gene31805.t1 | AT5G19530 | 30.222 | 225 | 150 | 5 | 61 | 280 | 40 | 262 | 7.02e-31 | 119 |
| MS.gene31805.t1 | AT5G19530 | 30.222 | 225 | 150 | 5 | 61 | 280 | 47 | 269 | 9.12e-31 | 119 |
Find 61 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTCCAAGAGGTTT+TGG | 0.268721 | 1.1:+14066015 | MS.gene31805:CDS |
| GTGGAGATGGTGGAGTTCTA+AGG | 0.279701 | 1.1:+14066420 | MS.gene31805:CDS |
| TATTTGTGAGATAGATAAAA+TGG | 0.298775 | 1.1:+14066478 | MS.gene31805:CDS |
| GGAGATGAGTTATCATTTCT+TGG | 0.301977 | 1.1:-14066200 | None:intergenic |
| TGTCATTCTACTGTTGTATC+TGG | 0.325189 | 1.1:+14065100 | MS.gene31805:CDS |
| GCTTCATACTCACCTTATTC+AGG | 0.325838 | 1.1:+14067407 | MS.gene31805:CDS |
| TGACACTTTCCCTCAAGTTC+AGG | 0.333249 | 1.1:-14065082 | None:intergenic |
| TGACATTAGCCAAGGCATTA+AGG | 0.340482 | 1.1:+14067346 | MS.gene31805:CDS |
| ATCAGAGGAATCAACAATTA+TGG | 0.349717 | 1.1:-14066840 | None:intergenic |
| TGGAGATCATGTCCTGAATA+AGG | 0.362663 | 1.1:-14067419 | None:intergenic |
| TTAGTTGTTGGTGGTGGAGA+TGG | 0.363986 | 1.1:+14066407 | MS.gene31805:CDS |
| GATTTGCAGTCATTAACATA+TGG | 0.373520 | 1.1:+14066120 | MS.gene31805:intron |
| AGCAAATGTTTGTTGACAAA+TGG | 0.374139 | 1.1:-14067439 | None:intergenic |
| TTGGCATGCAGTGGTGTGAT+AGG | 0.401422 | 1.1:+14067704 | MS.gene31805:intron |
| TGGTGGTGTGCTATGTAATA+TGG | 0.402346 | 1.1:+14067371 | MS.gene31805:CDS |
| CAATAATACCTTGGATATGT+TGG | 0.427530 | 1.1:-14067489 | None:intergenic |
| AATTCCTTCTTGTTGCTTGA+AGG | 0.435232 | 1.1:+14065045 | MS.gene31805:CDS |
| GGGAAAGTGCTTGTACTTGA+TGG | 0.443480 | 1.1:+14066141 | MS.gene31805:CDS |
| ATCGGGTTTACAAAATCAAC+TGG | 0.444824 | 1.1:-14067755 | None:intergenic |
| ATTTGCAGTCATTAACATAT+GGG | 0.463554 | 1.1:+14066121 | MS.gene31805:intron |
| GACACTTTCCCTCAAGTTCA+GGG | 0.465351 | 1.1:-14065081 | None:intergenic |
| GTTTCAGACCCTGAACTTGA+GGG | 0.474172 | 1.1:+14065073 | MS.gene31805:CDS |
| TGGTGGTTTAGGTCCTGCTC+AGG | 0.476181 | 1.1:+14067299 | MS.gene31805:intron |
| GTTGTTGGTGGTGGAGATGG+TGG | 0.478081 | 1.1:+14066410 | MS.gene31805:CDS |
| TTCTTGTTGCTTGAAGGCTA+AGG | 0.482024 | 1.1:+14065051 | MS.gene31805:CDS |
| TTGCTTCTGTACTTTATGCA+TGG | 0.488714 | 1.1:+14067457 | MS.gene31805:CDS |
| TTTCTTAGATGCACTTCTGA+AGG | 0.496400 | 1.1:+14066806 | MS.gene31805:CDS |
| TTCAACAATCCAATGTGGCC+AGG | 0.498571 | 1.1:+14065274 | MS.gene31805:CDS |
| TCACAATCTCAATCTTCCTA+TGG | 0.502719 | 1.1:+14065130 | MS.gene31805:CDS |
| ACCACCAGGCCTTAATGCCT+TGG | 0.505979 | 1.1:-14067355 | None:intergenic |
| CTTTATCTTATGCTCAAAAG+AGG | 0.509069 | 1.1:+14067727 | MS.gene31805:CDS |
| TCAAATCCAACAGCTAACTC+TGG | 0.513813 | 1.1:-14066617 | None:intergenic |
| GGTTTCAGACCCTGAACTTG+AGG | 0.516083 | 1.1:+14065072 | MS.gene31805:CDS |
| TTTATCTTATGCTCAAAAGA+GGG | 0.518661 | 1.1:+14067728 | MS.gene31805:CDS |
| ATTCTACTGTTGTATCTGGA+TGG | 0.519409 | 1.1:+14065104 | MS.gene31805:CDS |
| TTGGACAAACCTGGCCACAT+TGG | 0.519525 | 1.1:-14065283 | None:intergenic |
| CTAAGCACATAAGAGAACTT+AGG | 0.523416 | 1.1:+14067807 | MS.gene31805:CDS |
| CCAACATGCAGGTGTACTCT+AGG | 0.528257 | 1.1:-14066644 | None:intergenic |
| TGGAGATGGTGGAGTTCTAA+GGG | 0.538304 | 1.1:+14066421 | MS.gene31805:CDS |
| GTAATATGGCAGAAAGTATG+TGG | 0.561543 | 1.1:+14067385 | MS.gene31805:CDS |
| GTTGATTCCTCTGATCCAGT+TGG | 0.564389 | 1.1:+14066848 | MS.gene31805:CDS |
| TTAGCCAAGGCATTAAGGCC+TGG | 0.569982 | 1.1:+14067351 | MS.gene31805:CDS |
| AGATACCATCACCAACATGC+AGG | 0.601847 | 1.1:-14066655 | None:intergenic |
| TGACATACCAACTGGATCAG+AGG | 0.601887 | 1.1:-14066855 | None:intergenic |
| TTAGCCTTCAAGCAACAAGA+AGG | 0.606773 | 1.1:-14065049 | None:intergenic |
| AGAACTTAGGTTCTATAACT+CGG | 0.610249 | 1.1:+14067820 | MS.gene31805:CDS |
| GGGACTGAATTGAACAAAGT+GGG | 0.612644 | 1.1:-14066221 | None:intergenic |
| ATATTACATAGCACACCACC+AGG | 0.623470 | 1.1:-14067369 | None:intergenic |
| GGGGACTGAATTGAACAAAG+TGG | 0.629263 | 1.1:-14066222 | None:intergenic |
| TTATCTTATGCTCAAAAGAG+GGG | 0.634919 | 1.1:+14067729 | MS.gene31805:CDS |
| AATTGTTCAGTTGACTGAGA+AGG | 0.638902 | 1.1:+14066164 | MS.gene31805:CDS |
| CCTAGAGTACACCTGCATGT+TGG | 0.640270 | 1.1:+14066644 | MS.gene31805:CDS |
| TTTATTTCAACAATCCAATG+TGG | 0.648236 | 1.1:+14065269 | MS.gene31805:CDS |
| GAATTGTGTAGATATAGAGA+AGG | 0.649083 | 1.1:+14065021 | MS.gene31805:CDS |
| CTAGTGTTCCAACATATCCA+AGG | 0.650334 | 1.1:+14067481 | MS.gene31805:CDS |
| GTACACCTGCATGTTGGTGA+TGG | 0.658823 | 1.1:+14066650 | MS.gene31805:CDS |
| GCCAAGGCATTAAGGCCTGG+TGG | 0.681200 | 1.1:+14067354 | MS.gene31805:CDS |
| GGGTTTACAAAATCAACTGG+TGG | 0.688551 | 1.1:-14067752 | None:intergenic |
| CATGAGTTACAGAACTGTGG+CGG | 0.698296 | 1.1:-14066451 | None:intergenic |
| ACTTAGGTTCTATAACTCGG+AGG | 0.698666 | 1.1:+14067823 | MS.gene31805:CDS |
| CAACATGAGTTACAGAACTG+TGG | 0.702544 | 1.1:-14066454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATCAACTATA+TGG | - | chr1.1:14066540-14066559 | None:intergenic | 10.0% |
| !!! | ATATTATATAACTTTTTCTT+TGG | + | chr1.1:14066951-14066970 | MS.gene31805:intron | 10.0% |
| !!! | GAAAATTAGTTTATATATTA+GGG | - | chr1.1:14067586-14067605 | None:intergenic | 10.0% |
| !!! | TGAAAATTAGTTTATATATT+AGG | - | chr1.1:14067587-14067606 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATCAAATAGCA+TGG | - | chr1.1:14065166-14065185 | None:intergenic | 15.0% |
| !!! | AAAAATAACATAACTGTTTT+GGG | - | chr1.1:14066246-14066265 | None:intergenic | 15.0% |
| !!! | AAAGTAAATTTTATCTAGAA+AGG | - | chr1.1:14068452-14068471 | None:intergenic | 15.0% |
| !!! | AATACTTGTAATATTTTCAT+AGG | + | chr1.1:14065312-14065331 | MS.gene31805:intron | 15.0% |
| !!! | CATTTAGGATATTTATAAAA+CGG | - | chr1.1:14066363-14066382 | None:intergenic | 15.0% |
| !!! | GAATTGTTTGTAATAATTTT+TGG | + | chr1.1:14065394-14065413 | MS.gene31805:intron | 15.0% |
| !!! | TGATATTTTAAAAAAATCAG+AGG | + | chr1.1:14067062-14067081 | MS.gene31805:intron | 15.0% |
| !!! | TTAGTGATAATATTTTCTTA+GGG | - | chr1.1:14065217-14065236 | None:intergenic | 15.0% |
| !!! | TTTAGTGATAATATTTTCTT+AGG | - | chr1.1:14065218-14065237 | None:intergenic | 15.0% |
| !! | AAAACGCAATCATTAATAAA+AGG | - | chr1.1:14067666-14067685 | None:intergenic | 20.0% |
| !! | AAAGAATAGTTGTAAAAAAG+AGG | - | chr1.1:14065875-14065894 | None:intergenic | 20.0% |
| !! | AAGAATAGTTGTAAAAAAGA+GGG | - | chr1.1:14065874-14065893 | None:intergenic | 20.0% |
| !! | ACAAACATATAGTATAGATT+TGG | - | chr1.1:14065632-14065651 | None:intergenic | 20.0% |
| !! | CAAACATATAGTATAGATTT+GGG | - | chr1.1:14065631-14065650 | None:intergenic | 20.0% |
| !! | GTATTTGAAAATCCAAAATA+AGG | - | chr1.1:14068153-14068172 | None:intergenic | 20.0% |
| !! | TAACAACATTAAAACCATTT+AGG | - | chr1.1:14066378-14066397 | None:intergenic | 20.0% |
| !! | TATTACAAGTATTATGCAAT+TGG | - | chr1.1:14065305-14065324 | None:intergenic | 20.0% |
| !! | TATTTGTGAGATAGATAAAA+TGG | + | chr1.1:14066478-14066497 | MS.gene31805:CDS | 20.0% |
| !!! | AAAATAACATAACTGTTTTG+GGG | - | chr1.1:14066245-14066264 | None:intergenic | 20.0% |
| !!! | AGATTCTAAAATCCTTATTT+TGG | + | chr1.1:14068138-14068157 | MS.gene31805:intron | 20.0% |
| !!! | CAAAAATAACATAACTGTTT+TGG | - | chr1.1:14066247-14066266 | None:intergenic | 20.0% |
| !!! | CGTTTTATAAATATCCTAAA+TGG | + | chr1.1:14066361-14066380 | MS.gene31805:intron | 20.0% |
| !!! | CTTTTCTAACTACTAAAATT+TGG | + | chr1.1:14065837-14065856 | MS.gene31805:intron | 20.0% |
| !!! | GAAAATAGAATAATTTGCTT+TGG | - | chr1.1:14067171-14067190 | None:intergenic | 20.0% |
| !!! | TAGTGATAATATTTTCTTAG+GGG | - | chr1.1:14065216-14065235 | None:intergenic | 20.0% |
| !!! | TTTCTGTCATTTTTTAAAAC+AGG | + | chr1.1:14065238-14065257 | MS.gene31805:intron | 20.0% |
| !!! | TTTGTAATAATTTTTGGCTA+AGG | + | chr1.1:14065400-14065419 | MS.gene31805:intron | 20.0% |
| ! | ACAATACAAGAAAGAAAAAC+AGG | - | chr1.1:14068352-14068371 | None:intergenic | 25.0% |
| ! | ACCAAAATCATCAAAACTAA+CGG | - | chr1.1:14065937-14065956 | None:intergenic | 25.0% |
| ! | AGGATATTTATAAAACGGTT+TGG | - | chr1.1:14066358-14066377 | None:intergenic | 25.0% |
| ! | AGTAGAAAAAATATTGTACG+AGG | + | chr1.1:14065988-14066007 | MS.gene31805:CDS | 25.0% |
| ! | ATGCTATTATTACTCGAAAA+TGG | - | chr1.1:14068271-14068290 | None:intergenic | 25.0% |
| ! | ATTTGCAGTCATTAACATAT+GGG | + | chr1.1:14066121-14066140 | MS.gene31805:intron | 25.0% |
| ! | TAATAAAATGACATACCAAC+TGG | - | chr1.1:14066866-14066885 | None:intergenic | 25.0% |
| ! | TAGAAGCAACAAATATCTTT+GGG | - | chr1.1:14067866-14067885 | None:intergenic | 25.0% |
| ! | TCAATAGACAGAATAAAACT+TGG | - | chr1.1:14068396-14068415 | None:intergenic | 25.0% |
| ! | TCATCAACAACTATAATATC+CGG | + | chr1.1:14066977-14066996 | MS.gene31805:intron | 25.0% |
| ! | TCTCTTATTATCTCTTTCTT+TGG | + | chr1.1:14067279-14067298 | MS.gene31805:intron | 25.0% |
| ! | TTGATTAACACCAATTGTTA+TGG | + | chr1.1:14066098-14066117 | MS.gene31805:intron | 25.0% |
| ! | TTGGATCGATTAAAATCAAA+CGG | - | chr1.1:14066339-14066358 | None:intergenic | 25.0% |
| ! | TTTATCTTATGCTCAAAAGA+GGG | + | chr1.1:14067728-14067747 | MS.gene31805:CDS | 25.0% |
| ! | TTTATTTCAACAATCCAATG+TGG | + | chr1.1:14065269-14065288 | MS.gene31805:CDS | 25.0% |
| !! | AAATATGCATGCATTTTGAA+CGG | + | chr1.1:14068178-14068197 | MS.gene31805:intron | 25.0% |
| !! | ACTTGTAATATTTTCATAGG+TGG | + | chr1.1:14065315-14065334 | MS.gene31805:intron | 25.0% |
| !! | TTTTTGTGTTTTGTCATGAA+TGG | + | chr1.1:14068298-14068317 | MS.gene31805:intron | 25.0% |
| !!! | AAATAACATAACTGTTTTGG+GGG | - | chr1.1:14066244-14066263 | None:intergenic | 25.0% |
| !!! | TAATAATTTTTGGCTAAGGA+TGG | + | chr1.1:14065404-14065423 | MS.gene31805:intron | 25.0% |
| !!! | TATTTGTTTTCTTCCTTGTT+TGG | + | chr1.1:14067685-14067704 | MS.gene31805:intron | 25.0% |
| !!! | TGATTTTGGTTTCTATCATT+AGG | + | chr1.1:14065947-14065966 | MS.gene31805:intron | 25.0% |
| !!! | TGTCTTCAACTTTTTCAATA+GGG | - | chr1.1:14067784-14067803 | None:intergenic | 25.0% |
| !!! | TTGTCTTCAACTTTTTCAAT+AGG | - | chr1.1:14067785-14067804 | None:intergenic | 25.0% |
| AAATGATTGAGAACCTATGT+AGG | + | chr1.1:14067089-14067108 | MS.gene31805:intron | 30.0% | |
| AGAACTTAGGTTCTATAACT+CGG | + | chr1.1:14067820-14067839 | MS.gene31805:CDS | 30.0% | |
| ATCAGAGGAATCAACAATTA+TGG | - | chr1.1:14066843-14066862 | None:intergenic | 30.0% | |
| CAATAATACCTTGGATATGT+TGG | - | chr1.1:14067492-14067511 | None:intergenic | 30.0% | |
| CAATATCCAAACAAGATCAT+CGG | - | chr1.1:14065481-14065500 | None:intergenic | 30.0% | |
| CAATTGATCATTCATTCACT+AGG | + | chr1.1:14066577-14066596 | MS.gene31805:intron | 30.0% | |
| CTTATTATCTCTTTCTTTGG+TGG | + | chr1.1:14067282-14067301 | MS.gene31805:intron | 30.0% | |
| CTTTATCTTATGCTCAAAAG+AGG | + | chr1.1:14067727-14067746 | MS.gene31805:CDS | 30.0% | |
| GAATTGTGTAGATATAGAGA+AGG | + | chr1.1:14065021-14065040 | MS.gene31805:CDS | 30.0% | |
| GATTTGCAGTCATTAACATA+TGG | + | chr1.1:14066120-14066139 | MS.gene31805:intron | 30.0% | |
| GTAGAAGCAACAAATATCTT+TGG | - | chr1.1:14067867-14067886 | None:intergenic | 30.0% | |
| TAGCAACAAAAAGATACAAG+AGG | - | chr1.1:14066901-14066920 | None:intergenic | 30.0% | |
| TCGATTAAAATCAAACGGTT+TGG | - | chr1.1:14066334-14066353 | None:intergenic | 30.0% | |
| TGGCAAAAGAATAAATGAGT+GGG | - | chr1.1:14068376-14068395 | None:intergenic | 30.0% | |
| TGTTGTAGAGAATGTAGAAT+AGG | + | chr1.1:14065347-14065366 | MS.gene31805:intron | 30.0% | |
| TTATCTTATGCTCAAAAGAG+GGG | + | chr1.1:14067729-14067748 | MS.gene31805:CDS | 30.0% | |
| TTGGCAAAAGAATAAATGAG+TGG | - | chr1.1:14068377-14068396 | None:intergenic | 30.0% | |
| TTGGCTAATGTCACAAAAAA+TGG | - | chr1.1:14067339-14067358 | None:intergenic | 30.0% | |
| ! | AAATTTAGCCCAAAAGTATG+AGG | - | chr1.1:14067006-14067025 | None:intergenic | 30.0% |
| ! | AGCAAATGTTTGTTGACAAA+TGG | - | chr1.1:14067442-14067461 | None:intergenic | 30.0% |
| ! | CAAAAGCAAGAATCTTTTGT+TGG | + | chr1.1:14067244-14067263 | MS.gene31805:intron | 30.0% |
| ! | GTTTTACCTTATCATTGTGA+CGG | + | chr1.1:14066266-14066285 | MS.gene31805:intron | 30.0% |
| ! | TAATATTTTCTTAGGGGTGA+TGG | - | chr1.1:14065210-14065229 | None:intergenic | 30.0% |
| ! | TAGCTTTTGCAAAATCAAGA+TGG | + | chr1.1:14065758-14065777 | MS.gene31805:intron | 30.0% |
| ! | TGTCTATTGATTGCATTAGA+TGG | + | chr1.1:14068406-14068425 | MS.gene31805:intron | 30.0% |
| ! | TGTTGCTTCTACAAAGTTAA+AGG | + | chr1.1:14067875-14067894 | MS.gene31805:intron | 30.0% |
| ! | TTTCGAGTAATAATAGCATG+TGG | + | chr1.1:14068272-14068291 | MS.gene31805:intron | 30.0% |
| !! | CTATACCGTCTAATTTTGAT+CGG | + | chr1.1:14065567-14065586 | MS.gene31805:intron | 30.0% |
| !! | TTTACCAGCATTTTTGAAGA+GGG | + | chr1.1:14068550-14068569 | MS.gene31805:CDS | 30.0% |
| !!! | ACCGTTAGTTTTGATGATTT+TGG | + | chr1.1:14065933-14065952 | MS.gene31805:intron | 30.0% |
| !!! | ACTTTTTCAATAGGGTTGAT+CGG | - | chr1.1:14067776-14067795 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTGACATTAGCCA+AGG | + | chr1.1:14067338-14067357 | MS.gene31805:CDS | 30.0% |
| AATTGTTCAGTTGACTGAGA+AGG | + | chr1.1:14066164-14066183 | MS.gene31805:CDS | 35.0% | |
| ACCATCCGATCAAAATTAGA+CGG | - | chr1.1:14065575-14065594 | None:intergenic | 35.0% | |
| ATCGGGTTTACAAAATCAAC+TGG | - | chr1.1:14067758-14067777 | None:intergenic | 35.0% | |
| ATTATGCAATTGGACAAACC+TGG | - | chr1.1:14065295-14065314 | None:intergenic | 35.0% | |
| ATTCTACTGTTGTATCTGGA+TGG | + | chr1.1:14065104-14065123 | MS.gene31805:CDS | 35.0% | |
| CATTCTCTACAACAACTCAA+TGG | - | chr1.1:14065341-14065360 | None:intergenic | 35.0% | |
| CTAAGCACATAAGAGAACTT+AGG | + | chr1.1:14067807-14067826 | MS.gene31805:CDS | 35.0% | |
| GACTGCAAATCCATAACAAT+TGG | - | chr1.1:14066111-14066130 | None:intergenic | 35.0% | |
| GGAGATGAGTTATCATTTCT+TGG | - | chr1.1:14066203-14066222 | None:intergenic | 35.0% | |
| GTTGCGAACAATCATCATAT+TGG | + | chr1.1:14068087-14068106 | MS.gene31805:intron | 35.0% | |
| TCACAATCTCAATCTTCCTA+TGG | + | chr1.1:14065130-14065149 | MS.gene31805:CDS | 35.0% | |
| TGAGCTGAACAATAATACCT+TGG | - | chr1.1:14067501-14067520 | None:intergenic | 35.0% | |
| TGTAATCACAAGTGTCCTAT+CGG | - | chr1.1:14067929-14067948 | None:intergenic | 35.0% | |
| TGTCATTCTACTGTTGTATC+TGG | + | chr1.1:14065100-14065119 | MS.gene31805:CDS | 35.0% | |
| TGTTGATGTCACATTGAGTT+AGG | - | chr1.1:14065800-14065819 | None:intergenic | 35.0% | |
| TTGCTTCTGTACTTTATGCA+TGG | + | chr1.1:14067457-14067476 | MS.gene31805:CDS | 35.0% | |
| TTTCTTAGATGCACTTCTGA+AGG | + | chr1.1:14066806-14066825 | MS.gene31805:CDS | 35.0% | |
| ! | AATTCCTTCTTGTTGCTTGA+AGG | + | chr1.1:14065045-14065064 | MS.gene31805:CDS | 35.0% |
| ! | ATCTCTTTCTTTGGTGGTTT+AGG | + | chr1.1:14067288-14067307 | MS.gene31805:intron | 35.0% |
| ! | CGATGATCTTGTTTGGATAT+TGG | + | chr1.1:14065479-14065498 | MS.gene31805:intron | 35.0% |
| ! | CTTTACGTTGAAGGTGTATT+TGG | + | chr1.1:14067119-14067138 | MS.gene31805:intron | 35.0% |
| ! | GTAATATGGCAGAAAGTATG+TGG | + | chr1.1:14067385-14067404 | MS.gene31805:CDS | 35.0% |
| ! | TACAAAGTTAAAGGCGTGTT+TGG | + | chr1.1:14067884-14067903 | MS.gene31805:intron | 35.0% |
| ! | TATTTTCCAGAGTTAGCTGT+TGG | + | chr1.1:14066611-14066630 | MS.gene31805:CDS | 35.0% |
| ! | TTTTTGTACGCGTACATGTT+TGG | + | chr1.1:14065704-14065723 | MS.gene31805:intron | 35.0% |
| !! | CTTTACCAGCATTTTTGAAG+AGG | + | chr1.1:14068549-14068568 | MS.gene31805:CDS | 35.0% |
| !! | GGTTTTAATGTTGTTAGTCC+AGG | + | chr1.1:14066382-14066401 | MS.gene31805:intron | 35.0% |
| !!! | CTTTTTCAATAGGGTTGATC+GGG | - | chr1.1:14067775-14067794 | None:intergenic | 35.0% |
| !!! | TAATTTTTGGCTAAGGATGG+TGG | + | chr1.1:14065407-14065426 | MS.gene31805:intron | 35.0% |
| !!! | TTAGTCCAGGTTTTAGTTGT+TGG | + | chr1.1:14066395-14066414 | MS.gene31805:intron | 35.0% |
| ACACCTTCAACGTAAAGTGT+TGG | - | chr1.1:14067116-14067135 | None:intergenic | 40.0% | |
| ACTTAGGTTCTATAACTCGG+AGG | + | chr1.1:14067823-14067842 | MS.gene31805:CDS | 40.0% | |
| ATATTACATAGCACACCACC+AGG | - | chr1.1:14067372-14067391 | None:intergenic | 40.0% | |
| CAACATGAGTTACAGAACTG+TGG | - | chr1.1:14066457-14066476 | None:intergenic | 40.0% | |
| CCTCAAAAACCAAAACCTCT+TGG | - | chr1.1:14066027-14066046 | None:intergenic | 40.0% | |
| CGAATTCCGTCACAATGATA+AGG | - | chr1.1:14066275-14066294 | None:intergenic | 40.0% | |
| CTAGTGTTCCAACATATCCA+AGG | + | chr1.1:14067481-14067500 | MS.gene31805:CDS | 40.0% | |
| GACTATCCGATGATCTTGTT+TGG | + | chr1.1:14065472-14065491 | MS.gene31805:intron | 40.0% | |
| GCGAACAATCATCATATTGG+TGG | + | chr1.1:14068090-14068109 | MS.gene31805:intron | 40.0% | |
| GCTTCATACTCACCTTATTC+AGG | + | chr1.1:14067407-14067426 | MS.gene31805:CDS | 40.0% | |
| GGAAAAATCAGAGTTCCAAG+AGG | + | chr1.1:14066009-14066028 | MS.gene31805:CDS | 40.0% | |
| GGGACTGAATTGAACAAAGT+GGG | - | chr1.1:14066224-14066243 | None:intergenic | 40.0% | |
| GGGTTTACAAAATCAACTGG+TGG | - | chr1.1:14067755-14067774 | None:intergenic | 40.0% | |
| TCAAATCCAACAGCTAACTC+TGG | - | chr1.1:14066620-14066639 | None:intergenic | 40.0% | |
| TGGAGATCATGTCCTGAATA+AGG | - | chr1.1:14067422-14067441 | None:intergenic | 40.0% | |
| ! | ATCAGAGTTCCAAGAGGTTT+TGG | + | chr1.1:14066015-14066034 | MS.gene31805:CDS | 40.0% |
| ! | ATCATCATATTGGTGGCCAT+TGG | + | chr1.1:14068097-14068116 | MS.gene31805:intron | 40.0% |
| ! | ATCCGGTTTCCTCATACTTT+TGG | + | chr1.1:14066994-14067013 | MS.gene31805:intron | 40.0% |
| ! | ATTGGTCGAGATTTTGAGCT+CGG | + | chr1.1:14065497-14065516 | MS.gene31805:intron | 40.0% |
| ! | TCCGGTTTCCTCATACTTTT+GGG | + | chr1.1:14066995-14067014 | MS.gene31805:intron | 40.0% |
| ! | TGACATTAGCCAAGGCATTA+AGG | + | chr1.1:14067346-14067365 | MS.gene31805:CDS | 40.0% |
| ! | TGGTGGTGTGCTATGTAATA+TGG | + | chr1.1:14067371-14067390 | MS.gene31805:CDS | 40.0% |
| ! | TTAGCCTTCAAGCAACAAGA+AGG | - | chr1.1:14065052-14065071 | None:intergenic | 40.0% |
| ! | TTCTTGTTGCTTGAAGGCTA+AGG | + | chr1.1:14065051-14065070 | MS.gene31805:CDS | 40.0% |
| ! | TTTTCTACAAGTTCCTGAGC+AGG | - | chr1.1:14067315-14067334 | None:intergenic | 40.0% |
| !! | ACCGTCTAATTTTGATCGGA+TGG | + | chr1.1:14065571-14065590 | MS.gene31805:intron | 40.0% |
| !! | GTAAAGTGTTGGTCCTACAT+AGG | - | chr1.1:14067105-14067124 | None:intergenic | 40.0% |
| !!! | CCAAGAGGTTTTGGTTTTTG+AGG | + | chr1.1:14066024-14066043 | MS.gene31805:CDS | 40.0% |
| AATGAATATCCACGACCGCA+TGG | - | chr1.1:14066301-14066320 | None:intergenic | 45.0% | |
| ACCTCCCTCTTCAAAAATGC+TGG | - | chr1.1:14068557-14068576 | None:intergenic | 45.0% | |
| AGATACCATCACCAACATGC+AGG | - | chr1.1:14066658-14066677 | None:intergenic | 45.0% | |
| CACCACCAACAACTAAAACC+TGG | - | chr1.1:14066403-14066422 | None:intergenic | 45.0% | |
| CATGAGTTACAGAACTGTGG+CGG | - | chr1.1:14066454-14066473 | None:intergenic | 45.0% | |
| GACACTTTCCCTCAAGTTCA+GGG | - | chr1.1:14065084-14065103 | None:intergenic | 45.0% | |
| GGACCAACACTTTACGTTGA+AGG | + | chr1.1:14067110-14067129 | MS.gene31805:intron | 45.0% | |
| GGATGGTTCAGATGAATGTG+TGG | + | chr1.1:14065588-14065607 | MS.gene31805:intron | 45.0% | |
| GGGGACTGAATTGAACAAAG+TGG | - | chr1.1:14066225-14066244 | None:intergenic | 45.0% | |
| GTTTCAGACCCTGAACTTGA+GGG | + | chr1.1:14065073-14065092 | MS.gene31805:CDS | 45.0% | |
| TGACACTTTCCCTCAAGTTC+AGG | - | chr1.1:14065085-14065104 | None:intergenic | 45.0% | |
| TGACATACCAACTGGATCAG+AGG | - | chr1.1:14066858-14066877 | None:intergenic | 45.0% | |
| TGACGGAATTCGATTCCATG+CGG | + | chr1.1:14066283-14066302 | MS.gene31805:intron | 45.0% | |
| TTCAACAATCCAATGTGGCC+AGG | + | chr1.1:14065274-14065293 | MS.gene31805:CDS | 45.0% | |
| ! | GCCCAAAAGTATGAGGAAAC+CGG | - | chr1.1:14066999-14067018 | None:intergenic | 45.0% |
| ! | GTTGATTCCTCTGATCCAGT+TGG | + | chr1.1:14066848-14066867 | MS.gene31805:CDS | 45.0% |
| !! | ACCAGCATTTTTGAAGAGGG+AGG | + | chr1.1:14068553-14068572 | MS.gene31805:CDS | 45.0% |
| !! | ATGGTGGAGGTGGACTATAT+GGG | + | chr1.1:14065423-14065442 | MS.gene31805:intron | 45.0% |
| !! | GCATGGTTGATGATGACCAT+AGG | - | chr1.1:14065149-14065168 | None:intergenic | 45.0% |
| !! | GGGAAAGTGCTTGTACTTGA+TGG | + | chr1.1:14066141-14066160 | MS.gene31805:CDS | 45.0% |
| !! | TGGAGATGGTGGAGTTCTAA+GGG | + | chr1.1:14066421-14066440 | MS.gene31805:CDS | 45.0% |
| !! | TTAGTTGTTGGTGGTGGAGA+TGG | + | chr1.1:14066407-14066426 | MS.gene31805:CDS | 45.0% |
| !!! | CAGGTTTTAGTTGTTGGTGG+TGG | + | chr1.1:14066401-14066420 | MS.gene31805:intron | 45.0% |
| !!! | GTCCAGGTTTTAGTTGTTGG+TGG | + | chr1.1:14066398-14066417 | MS.gene31805:intron | 45.0% |
| !!! | TTTTTGGCTAAGGATGGTGG+AGG | + | chr1.1:14065410-14065429 | MS.gene31805:intron | 45.0% |
| AATTCGATTCCATGCGGTCG+TGG | + | chr1.1:14066289-14066308 | MS.gene31805:intron | 50.0% | |
| ACACCACTGCATGCCAAACA+AGG | - | chr1.1:14067701-14067720 | None:intergenic | 50.0% | |
| ACCCTGCATTCACACAGCTA+GGG | - | chr1.1:14068230-14068249 | None:intergenic | 50.0% | |
| ACCGTCCCATCTTGATCCAA+TGG | - | chr1.1:14068116-14068135 | None:intergenic | 50.0% | |
| CCAACATGCAGGTGTACTCT+AGG | - | chr1.1:14066647-14066666 | None:intergenic | 50.0% | |
| CCTAGAGTACACCTGCATGT+TGG | + | chr1.1:14066644-14066663 | MS.gene31805:CDS | 50.0% | |
| GCCATTGGATCAAGATGGGA+CGG | + | chr1.1:14068112-14068131 | MS.gene31805:intron | 50.0% | |
| GGTGGCCATTGGATCAAGAT+GGG | + | chr1.1:14068108-14068127 | MS.gene31805:intron | 50.0% | |
| GGTTTCAGACCCTGAACTTG+AGG | + | chr1.1:14065072-14065091 | MS.gene31805:CDS | 50.0% | |
| TACCCTGCATTCACACAGCT+AGG | - | chr1.1:14068231-14068250 | None:intergenic | 50.0% | |
| TGGTGGCCATTGGATCAAGA+TGG | + | chr1.1:14068107-14068126 | MS.gene31805:intron | 50.0% | |
| TTGGACAAACCTGGCCACAT+TGG | - | chr1.1:14065286-14065305 | None:intergenic | 50.0% | |
| TTGGCATGCAGTGGTGTGAT+AGG | + | chr1.1:14067704-14067723 | MS.gene31805:intron | 50.0% | |
| ! | CTTCCTTGTTTGGCATGCAG+TGG | + | chr1.1:14067695-14067714 | MS.gene31805:intron | 50.0% |
| ! | GTACACCTGCATGTTGGTGA+TGG | + | chr1.1:14066650-14066669 | MS.gene31805:CDS | 50.0% |
| ! | TTAGCCAAGGCATTAAGGCC+TGG | + | chr1.1:14067351-14067370 | MS.gene31805:CDS | 50.0% |
| !! | GATGGTGGAGGTGGACTATA+TGG | + | chr1.1:14065422-14065441 | MS.gene31805:intron | 50.0% |
| !! | GTGGAGATGGTGGAGTTCTA+AGG | + | chr1.1:14066420-14066439 | MS.gene31805:CDS | 50.0% |
| ACCACCAGGCCTTAATGCCT+TGG | - | chr1.1:14067358-14067377 | None:intergenic | 55.0% | |
| CGACGTGTCAGTGTCATGTC+AGG | + | chr1.1:14067985-14068004 | MS.gene31805:intron | 55.0% | |
| GCCCTAGCTGTGTGAATGCA+GGG | + | chr1.1:14068226-14068245 | MS.gene31805:intron | 55.0% | |
| TGACACGTGTCGTGTCCGAT+AGG | + | chr1.1:14067911-14067930 | MS.gene31805:intron | 55.0% | |
| TGCCCTAGCTGTGTGAATGC+AGG | + | chr1.1:14068225-14068244 | MS.gene31805:intron | 55.0% | |
| TGGTGGTTTAGGTCCTGCTC+AGG | + | chr1.1:14067299-14067318 | MS.gene31805:intron | 55.0% | |
| !! | GTTGTTGGTGGTGGAGATGG+TGG | + | chr1.1:14066410-14066429 | MS.gene31805:CDS | 55.0% |
| !! | TTGGCTAAGGATGGTGGAGG+TGG | + | chr1.1:14065413-14065432 | MS.gene31805:intron | 55.0% |
| ! | GCCAAGGCATTAAGGCCTGG+TGG | + | chr1.1:14067354-14067373 | MS.gene31805:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14065019 | 14068625 | 14065019 | ID=MS.gene31805 |
| chr1.1 | mRNA | 14065019 | 14068625 | 14065019 | ID=MS.gene31805.t1;Parent=MS.gene31805 |
| chr1.1 | exon | 14065019 | 14065151 | 14065019 | ID=MS.gene31805.t1.exon1;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14065019 | 14065151 | 14065019 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14065260 | 14065295 | 14065260 | ID=MS.gene31805.t1.exon2;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14065260 | 14065295 | 14065260 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14065969 | 14066045 | 14065969 | ID=MS.gene31805.t1.exon3;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14065969 | 14066045 | 14065969 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14066129 | 14066251 | 14066129 | ID=MS.gene31805.t1.exon4;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14066129 | 14066251 | 14066129 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14066404 | 14066508 | 14066404 | ID=MS.gene31805.t1.exon5;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14066404 | 14066508 | 14066404 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14066599 | 14066671 | 14066599 | ID=MS.gene31805.t1.exon6;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14066599 | 14066671 | 14066599 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14066798 | 14066869 | 14066798 | ID=MS.gene31805.t1.exon7;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14066798 | 14066869 | 14066798 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14067310 | 14067502 | 14067310 | ID=MS.gene31805.t1.exon8;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14067310 | 14067502 | 14067310 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14067715 | 14067844 | 14067715 | ID=MS.gene31805.t1.exon9;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14067715 | 14067844 | 14067715 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| chr1.1 | exon | 14068530 | 14068625 | 14068530 | ID=MS.gene31805.t1.exon10;Parent=MS.gene31805.t1 |
| chr1.1 | CDS | 14068530 | 14068625 | 14068530 | ID=cds.MS.gene31805.t1;Parent=MS.gene31805.t1 |
| Gene Sequence |
| Protein sequence |
