Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31829.t1 | KEH40424.1 | 62 | 581 | 99 | 4 | 1 | 459 | 1 | 581 | 1.50E-148 | 536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31829.t1 | A0A072VEK3 | 62.0 | 581 | 99 | 4 | 1 | 459 | 1 | 581 | 1.1e-148 | 536.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05415 | MS.gene31829 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene31829 | -0.800951 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31829.t1 | MTR_1g028620 | 82.724 | 301 | 39 | 3 | 1 | 288 | 1 | 301 | 1.59e-157 | 459 |
| MS.gene31829.t1 | MTR_1g028620 | 80.347 | 173 | 34 | 0 | 287 | 459 | 409 | 581 | 3.71e-93 | 293 |
| MS.gene31829.t1 | MTR_1g028880 | 57.994 | 319 | 83 | 8 | 1 | 288 | 1 | 299 | 3.15e-88 | 280 |
| MS.gene31829.t1 | MTR_1g028880 | 63.934 | 183 | 63 | 3 | 280 | 460 | 393 | 574 | 1.39e-58 | 202 |
| MS.gene31829.t1 | MTR_1g028880 | 38.462 | 208 | 79 | 7 | 36 | 202 | 228 | 427 | 2.00e-15 | 79.0 |
| MS.gene31829.t1 | MTR_1g028850 | 41.748 | 206 | 90 | 6 | 261 | 441 | 74 | 274 | 7.99e-33 | 126 |
| MS.gene31829.t1 | MTR_1g028850 | 47.899 | 119 | 24 | 2 | 1 | 115 | 33 | 117 | 8.05e-20 | 89.7 |
| MS.gene31829.t1 | MTR_1g028700 | 40.678 | 177 | 43 | 3 | 97 | 270 | 13 | 130 | 4.54e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
| MS.gene31829.t1 | AT5G53220 | 51.471 | 136 | 65 | 1 | 325 | 459 | 227 | 362 | 2.64e-39 | 145 |
Find 82 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCTTTCCTTCTTCTT+TGG | 0.158836 | 1.1:+14430132 | None:intergenic |
| CTTGAACAATGAAGAAAATT+TGG | 0.181705 | 1.1:-14430113 | MS.gene31829:CDS |
| TTCCTTATACGTTTACTAAT+TGG | 0.210834 | 1.1:+14429434 | None:intergenic |
| AGGGAGGAAAATTCTGATTT+AGG | 0.258564 | 1.1:-14429551 | MS.gene31829:CDS |
| ACTGACATGCGTGCAGTATT+TGG | 0.275393 | 1.1:-14428915 | MS.gene31829:CDS |
| CTGCAAATTTCAACTCCTTC+GGG | 0.292903 | 1.1:+14427518 | None:intergenic |
| TCATATTCCCACTTAATTTC+CGG | 0.304941 | 1.1:+14428939 | None:intergenic |
| GGTAGTAGTCAAGGGAAATT+TGG | 0.327311 | 1.1:+14427437 | None:intergenic |
| ATTGCAAGGCCGTTTCCTTT+TGG | 0.341522 | 1.1:+14430057 | None:intergenic |
| TTTCTCAGAGGCTGTACTTT+GGG | 0.347215 | 1.1:-14427611 | MS.gene31829:intron |
| CGGGATGATAAAACGTCTTC+AGG | 0.347846 | 1.1:-14429899 | MS.gene31829:CDS |
| TCTGCAAATTTCAACTCCTT+CGG | 0.360255 | 1.1:+14427517 | None:intergenic |
| ATCTTGTGAGCTACTCAAAT+TGG | 0.362571 | 1.1:+14429703 | None:intergenic |
| CTCACAATATTTCGCTAGAT+AGG | 0.379331 | 1.1:-14430192 | MS.gene31829:CDS |
| GAAATATTGTGAGAAATATC+AGG | 0.389706 | 1.1:+14430202 | None:intergenic |
| GGACAAGTCTAATAGTGATT+TGG | 0.391336 | 1.1:-14429729 | MS.gene31829:CDS |
| AATGAAGAAAATTTGGACTT+TGG | 0.403938 | 1.1:-14430106 | MS.gene31829:CDS |
| TCTAAAATTCAGAGGAAGAA+AGG | 0.406307 | 1.1:-14428963 | MS.gene31829:CDS |
| ATGTGCAAAATGTATCTGAT+AGG | 0.428965 | 1.1:-14429655 | MS.gene31829:CDS |
| CTTTATCGACAGCAAATGCT+TGG | 0.431929 | 1.1:-14428855 | MS.gene31829:CDS |
| TTTATCGACAGCAAATGCTT+GGG | 0.435305 | 1.1:-14428854 | MS.gene31829:CDS |
| AACATGTACTGTAGCAGAAA+GGG | 0.448253 | 1.1:-14429606 | MS.gene31829:CDS |
| CTCAGAGGCTGTACTTTGGG+AGG | 0.449009 | 1.1:-14427608 | MS.gene31829:intron |
| TTATGATACTTGATCTTATG+AGG | 0.452680 | 1.1:+14429872 | None:intergenic |
| AGAAAGGGCCGGAAATTAAG+TGG | 0.454905 | 1.1:-14428947 | MS.gene31829:CDS |
| ATTTCTCAGAGGCTGTACTT+TGG | 0.475823 | 1.1:-14427612 | MS.gene31829:intron |
| AGGAAACATTTGGCCGTGAC+GGG | 0.476824 | 1.1:-14428818 | MS.gene31829:CDS |
| ACATTTGGCCGTGACGGGCG+TGG | 0.479632 | 1.1:-14428813 | MS.gene31829:CDS |
| AAAGAAAACTGTGGAGGAGT+TGG | 0.490542 | 1.1:-14427552 | MS.gene31829:CDS |
| TCAGAGGCTGTACTTTGGGA+GGG | 0.491157 | 1.1:-14427607 | MS.gene31829:intron |
| CTAAAATTCAGAGGAAGAAA+GGG | 0.491197 | 1.1:-14428962 | MS.gene31829:CDS |
| ACATGCTTTGCCAAAGAAGA+AGG | 0.501982 | 1.1:-14430142 | MS.gene31829:CDS |
| CAGATGTATGAGGAAACATT+TGG | 0.507685 | 1.1:-14428828 | MS.gene31829:CDS |
| CAACATGTACTGTAGCAGAA+AGG | 0.508098 | 1.1:-14429607 | MS.gene31829:CDS |
| CATGTGCTGTAATTCCGAAA+AGG | 0.513552 | 1.1:-14429517 | MS.gene31829:CDS |
| TATTTGCTGCAAATACCAAA+AGG | 0.524727 | 1.1:-14430072 | MS.gene31829:CDS |
| TTCTTCTTTGGCAAAGCATG+TGG | 0.528255 | 1.1:+14430144 | None:intergenic |
| AACTCTGACAAGTCACAAGA+TGG | 0.530624 | 1.1:-14429104 | MS.gene31829:CDS |
| CGAGTCTGCAGACGACGCCT+TGG | 0.533607 | 1.1:+14429944 | None:intergenic |
| ACTCCAATTATGCTCAAAAG+AGG | 0.544573 | 1.1:-14429571 | MS.gene31829:CDS |
| GCTTGGGGAACAGATGTATG+AGG | 0.550064 | 1.1:-14428838 | MS.gene31829:CDS |
| GAGGAAACATTTGGCCGTGA+CGG | 0.554171 | 1.1:-14428819 | MS.gene31829:CDS |
| TACTAAATCCACGCCCGTCA+CGG | 0.555909 | 1.1:+14428805 | None:intergenic |
| TAACAAGGATTCTGATTCAC+AGG | 0.563864 | 1.1:-14429024 | MS.gene31829:CDS |
| GATTCACAGGACGTGTCGGA+TGG | 0.569176 | 1.1:-14429011 | MS.gene31829:CDS |
| CTGCAAATACCAAAAGGAAA+CGG | 0.569805 | 1.1:-14430066 | MS.gene31829:CDS |
| TTAGTAAGTATGATGCTGCC+AGG | 0.569814 | 1.1:-14428788 | MS.gene31829:intron |
| TTCTGATTCACAGGACGTGT+CGG | 0.577234 | 1.1:-14429015 | MS.gene31829:CDS |
| GTATCTGATAGGCAAGGTAT+CGG | 0.577831 | 1.1:-14429644 | MS.gene31829:CDS |
| TCGCTAGATAGGCAAGGTAG+TGG | 0.578997 | 1.1:-14430181 | MS.gene31829:CDS |
| GGATGCAGTGTTATGTATGA+AGG | 0.583376 | 1.1:-14428889 | MS.gene31829:CDS |
| ACTGATGACAGTCCTTATGA+TGG | 0.585553 | 1.1:-14427578 | MS.gene31829:CDS |
| CTCCAATTATGCTCAAAAGA+GGG | 0.590031 | 1.1:-14429570 | MS.gene31829:CDS |
| AAGTTGACATTCAAATGCCA+AGG | 0.590040 | 1.1:-14429961 | MS.gene31829:CDS |
| GCAGCATCTACTACACCCAC+TGG | 0.592205 | 1.1:-14430277 | MS.gene31829:CDS |
| TTATCGACAGCAAATGCTTG+GGG | 0.592426 | 1.1:-14428853 | MS.gene31829:CDS |
| AATTCAGAGGAAGAAAGGGC+CGG | 0.592702 | 1.1:-14428958 | MS.gene31829:CDS |
| TCGCTCATAACGACATTGCA+AGG | 0.594315 | 1.1:+14430043 | None:intergenic |
| GGCGTCGTCTGCAGACTCGA+AGG | 0.597338 | 1.1:-14429940 | MS.gene31829:CDS |
| GATTTGTCATACAGTGAGGA+AGG | 0.597633 | 1.1:-14429812 | MS.gene31829:CDS |
| GAAAGTGATCATGATGATGA+TGG | 0.603517 | 1.1:-14430016 | MS.gene31829:CDS |
| AAGACGTGTCTGATAAGTCA+CGG | 0.615640 | 1.1:-14429751 | MS.gene31829:CDS |
| TACTGTAGCAGAAAGGGGAA+AGG | 0.618230 | 1.1:-14429600 | MS.gene31829:CDS |
| AAGTCACAAGATGGATGTAA+CGG | 0.628561 | 1.1:-14429095 | MS.gene31829:CDS |
| AGATATTATCTAAAATTCAG+AGG | 0.636003 | 1.1:-14428971 | MS.gene31829:CDS |
| AGATGGATGTAACGGTGATG+TGG | 0.636636 | 1.1:-14429087 | MS.gene31829:CDS |
| CAAAATGTATCTGATAGGCA+AGG | 0.636969 | 1.1:-14429650 | MS.gene31829:CDS |
| AGACGTGTCTGATAAGTCAC+GGG | 0.639683 | 1.1:-14429750 | MS.gene31829:CDS |
| ACATGTACTGTAGCAGAAAG+GGG | 0.647225 | 1.1:-14429605 | MS.gene31829:CDS |
| TGATGATGATGACTTAGGAG+TGG | 0.647743 | 1.1:-14429834 | MS.gene31829:CDS |
| TTGGAAGAATATAATCCCGA+AGG | 0.647955 | 1.1:-14427533 | MS.gene31829:CDS |
| AGATTTAACAGATCGTAACA+AGG | 0.654306 | 1.1:-14429039 | MS.gene31829:CDS |
| AATATTTCGCTAGATAGGCA+AGG | 0.656349 | 1.1:-14430187 | MS.gene31829:CDS |
| GAAAGGGCCGGAAATTAAGT+GGG | 0.658462 | 1.1:-14428946 | MS.gene31829:CDS |
| TGATGGTCTAAAGAAAACTG+TGG | 0.662748 | 1.1:-14427561 | MS.gene31829:CDS |
| TGGTCTAAAGAAAACTGTGG+AGG | 0.668082 | 1.1:-14427558 | MS.gene31829:CDS |
| CAATTATGCTCAAAAGAGGG+AGG | 0.674083 | 1.1:-14429567 | MS.gene31829:CDS |
| CATGCGTGCAGTATTTGGAA+AGG | 0.681411 | 1.1:-14428910 | MS.gene31829:CDS |
| AGTGGATTTGTCATACAGTG+AGG | 0.704776 | 1.1:-14429816 | MS.gene31829:CDS |
| CATAAGGACTGTCATCAGTG+AGG | 0.734650 | 1.1:+14427582 | None:intergenic |
| TGAATCTGAAAATGACGACG+AGG | 0.739287 | 1.1:-14429468 | MS.gene31829:CDS |
| AGATTTACAAGATAACAACA+AGG | 0.742840 | 1.1:-14429684 | MS.gene31829:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAACAATTTTCTATC+AGG | - | chr1.1:14430062-14430081 | MS.gene31829:CDS | 15.0% |
| !!! | GTTTTTATTTTACTTTTTTG+TGG | - | chr1.1:14429518-14429537 | MS.gene31829:CDS | 15.0% |
| !! | TTAAAAAGTTAAATTCAGCA+AGG | + | chr1.1:14429987-14430006 | None:intergenic | 20.0% |
| !! | TTGTAATTCCATGTTATTAA+AGG | - | chr1.1:14429377-14429396 | MS.gene31829:intron | 20.0% |
| !!! | AATTGGTGATGTAAAATATT+AGG | + | chr1.1:14429653-14429672 | None:intergenic | 20.0% |
| !!! | AGATATTATCTAAAATTCAG+AGG | - | chr1.1:14428754-14428773 | MS.gene31829:intron | 20.0% |
| !!! | ATTTGCTATGTAACTTTTTT+TGG | - | chr1.1:14430006-14430025 | MS.gene31829:CDS | 20.0% |
| !!! | ATTTTTCCTTTTACATTACT+TGG | - | chr1.1:14429268-14429287 | MS.gene31829:intron | 20.0% |
| !!! | GATGTTAAATTTTTGATGTA+AGG | - | chr1.1:14429599-14429618 | MS.gene31829:CDS | 20.0% |
| ! | AATGAAGAAAATTTGGACTT+TGG | - | chr1.1:14427619-14427638 | MS.gene31829:intron | 25.0% |
| ! | AGATTTACAAGATAACAACA+AGG | - | chr1.1:14428041-14428060 | MS.gene31829:intron | 25.0% |
| ! | CAAAAATTTAACATCACAGT+TGG | + | chr1.1:14429594-14429613 | None:intergenic | 25.0% |
| ! | CAATTAATATACGCATGTTT+GGG | - | chr1.1:14429668-14429687 | MS.gene31829:CDS | 25.0% |
| ! | CTTGAACAATGAAGAAAATT+TGG | - | chr1.1:14427612-14427631 | MS.gene31829:intron | 25.0% |
| ! | GAAATATTGTGAGAAATATC+AGG | + | chr1.1:14427526-14427545 | None:intergenic | 25.0% |
| ! | GCAAGATTCTTATGTAATAA+AGG | + | chr1.1:14429001-14429020 | None:intergenic | 25.0% |
| ! | TCCATGTTATTAAAGGAATA+GGG | - | chr1.1:14429384-14429403 | MS.gene31829:intron | 25.0% |
| ! | TGTGAATTTGAACTATCATA+AGG | - | chr1.1:14429477-14429496 | MS.gene31829:CDS | 25.0% |
| ! | TTATGATACTTGATCTTATG+AGG | + | chr1.1:14427856-14427875 | None:intergenic | 25.0% |
| ! | TTCCATGTTATTAAAGGAAT+AGG | - | chr1.1:14429383-14429402 | MS.gene31829:intron | 25.0% |
| ! | TTCCTTATACGTTTACTAAT+TGG | + | chr1.1:14428294-14428313 | None:intergenic | 25.0% |
| ! | TTCTTTATAACCTGACTAAT+TGG | + | chr1.1:14428402-14428421 | None:intergenic | 25.0% |
| ! | TTGAAATTACAATTTCTCAG+AGG | - | chr1.1:14430102-14430121 | MS.gene31829:CDS | 25.0% |
| !! | AAAAATGATGATGATGACTT+AGG | - | chr1.1:14427886-14427905 | MS.gene31829:intron | 25.0% |
| !! | ATTCTGATTTTCAATTACAC+AGG | + | chr1.1:14430042-14430061 | None:intergenic | 25.0% |
| !!! | ATCAGGTTTCTAACATTTTT+TGG | - | chr1.1:14430079-14430098 | MS.gene31829:CDS | 25.0% |
| !!! | CTTTAAAATCCTTTATGTTG+TGG | - | chr1.1:14429861-14429880 | MS.gene31829:CDS | 25.0% |
| ACATGACCAAGTAATGTAAA+AGG | + | chr1.1:14429277-14429296 | None:intergenic | 30.0% | |
| AGATTTAACAGATCGTAACA+AGG | - | chr1.1:14428686-14428705 | MS.gene31829:intron | 30.0% | |
| ATGTGCAAAATGTATCTGAT+AGG | - | chr1.1:14428070-14428089 | MS.gene31829:intron | 30.0% | |
| CCAAACATGCGTATATTAAT+TGG | + | chr1.1:14429670-14429689 | None:intergenic | 30.0% | |
| CCAATTAATATACGCATGTT+TGG | - | chr1.1:14429667-14429686 | MS.gene31829:CDS | 30.0% | |
| CTAAAATTCAGAGGAAGAAA+GGG | - | chr1.1:14428763-14428782 | MS.gene31829:intron | 30.0% | |
| CTTTATATTGCGGAAAAATG+TGG | - | chr1.1:14429808-14429827 | MS.gene31829:CDS | 30.0% | |
| GAAACTTGTAAGCAAAAATC+GGG | - | chr1.1:14427807-14427826 | MS.gene31829:intron | 30.0% | |
| GGAAACTTGTAAGCAAAAAT+CGG | - | chr1.1:14427806-14427825 | MS.gene31829:intron | 30.0% | |
| GTCAGGTTATAAAGAAGAAA+AGG | - | chr1.1:14428406-14428425 | MS.gene31829:intron | 30.0% | |
| TCATATTCCCACTTAATTTC+CGG | + | chr1.1:14428789-14428808 | None:intergenic | 30.0% | |
| TCCCTATTCCTTTAATAACA+TGG | + | chr1.1:14429388-14429407 | None:intergenic | 30.0% | |
| TGCCAATTAGTAAACGTATA+AGG | - | chr1.1:14428289-14428308 | MS.gene31829:intron | 30.0% | |
| TGTTGCAAACCTTTATATTG+CGG | - | chr1.1:14429798-14429817 | MS.gene31829:CDS | 30.0% | |
| ! | AAGGAAACTTTTGTCTCTAT+AGG | - | chr1.1:14429496-14429515 | MS.gene31829:CDS | 30.0% |
| ! | CACATTTTTCCGCAATATAA+AGG | + | chr1.1:14429810-14429829 | None:intergenic | 30.0% |
| ! | GTCTTTTGCTTACACATTTT+CGG | + | chr1.1:14428461-14428480 | None:intergenic | 30.0% |
| ! | GTTTTCTTTAGACCATCATA+AGG | + | chr1.1:14430162-14430181 | None:intergenic | 30.0% |
| ! | TATTTGCTGCAAATACCAAA+AGG | - | chr1.1:14427653-14427672 | MS.gene31829:intron | 30.0% |
| ! | TCTAAAATTCAGAGGAAGAA+AGG | - | chr1.1:14428762-14428781 | MS.gene31829:intron | 30.0% |
| ! | TTTTACATTACTTGGTCATG+TGG | - | chr1.1:14429276-14429295 | MS.gene31829:intron | 30.0% |
| !! | ATGCTTTTTGTATATGTCGA+TGG | - | chr1.1:14429745-14429764 | MS.gene31829:CDS | 30.0% |
| !! | TGAGATTTTCAAGAACAAAG+AGG | - | chr1.1:14430263-14430282 | MS.gene31829:CDS | 30.0% |
| !!! | TGCTATGTAACTTTTTTTGG+AGG | - | chr1.1:14430009-14430028 | MS.gene31829:CDS | 30.0% |
| AAATTGCGACCACAACATAA+AGG | + | chr1.1:14429873-14429892 | None:intergenic | 35.0% | |
| AACATGTACTGTAGCAGAAA+GGG | - | chr1.1:14428119-14428138 | MS.gene31829:intron | 35.0% | |
| AAGTCACAAGATGGATGTAA+CGG | - | chr1.1:14428630-14428649 | MS.gene31829:intron | 35.0% | |
| AAGTTGACATTCAAATGCCA+AGG | - | chr1.1:14427764-14427783 | MS.gene31829:intron | 35.0% | |
| AATAGGGAAAATATCAGAGG+AGG | - | chr1.1:14429400-14429419 | MS.gene31829:intron | 35.0% | |
| AATATTTCGCTAGATAGGCA+AGG | - | chr1.1:14427538-14427557 | MS.gene31829:CDS | 35.0% | |
| ACTCCAATTATGCTCAAAAG+AGG | - | chr1.1:14428154-14428173 | MS.gene31829:intron | 35.0% | |
| AGGAATAGGGAAAATATCAG+AGG | - | chr1.1:14429397-14429416 | MS.gene31829:intron | 35.0% | |
| AGGGAGGAAAATTCTGATTT+AGG | - | chr1.1:14428174-14428193 | MS.gene31829:intron | 35.0% | |
| ATCTTGTGAGCTACTCAAAT+TGG | + | chr1.1:14428025-14428044 | None:intergenic | 35.0% | |
| CAAAATGTATCTGATAGGCA+AGG | - | chr1.1:14428075-14428094 | MS.gene31829:intron | 35.0% | |
| CAAGTTCTTTCCTTCTTCTT+TGG | + | chr1.1:14427596-14427615 | None:intergenic | 35.0% | |
| CAGATGTATGAGGAAACATT+TGG | - | chr1.1:14428897-14428916 | MS.gene31829:CDS | 35.0% | |
| CTCACAATATTTCGCTAGAT+AGG | - | chr1.1:14427533-14427552 | MS.gene31829:CDS | 35.0% | |
| CTCCAATTATGCTCAAAAGA+GGG | - | chr1.1:14428155-14428174 | MS.gene31829:intron | 35.0% | |
| CTGCAAATACCAAAAGGAAA+CGG | - | chr1.1:14427659-14427678 | MS.gene31829:intron | 35.0% | |
| GAAAGCTACCATTTGATAGA+AGG | + | chr1.1:14429045-14429064 | None:intergenic | 35.0% | |
| GGACAAGTCTAATAGTGATT+TGG | - | chr1.1:14427996-14428015 | MS.gene31829:intron | 35.0% | |
| TAACAAGGATTCTGATTCAC+AGG | - | chr1.1:14428701-14428720 | MS.gene31829:intron | 35.0% | |
| TCATGAGCATCATCATTTGT+TGG | + | chr1.1:14428510-14428529 | None:intergenic | 35.0% | |
| TCTGCAAATTTCAACTCCTT+CGG | + | chr1.1:14430211-14430230 | None:intergenic | 35.0% | |
| TGATGAGGATGAATTAGAAG+AGG | - | chr1.1:14428530-14428549 | MS.gene31829:intron | 35.0% | |
| TGATGATATGCCAATTAGTC+AGG | - | chr1.1:14428389-14428408 | MS.gene31829:intron | 35.0% | |
| TGATGGTCTAAAGAAAACTG+TGG | - | chr1.1:14430164-14430183 | MS.gene31829:CDS | 35.0% | |
| TTGGAAGAATATAATCCCGA+AGG | - | chr1.1:14430192-14430211 | MS.gene31829:CDS | 35.0% | |
| TTTATCGACAGCAAATGCTT+GGG | - | chr1.1:14428871-14428890 | MS.gene31829:CDS | 35.0% | |
| ! | GAAAGTGATCATGATGATGA+TGG | - | chr1.1:14427709-14427728 | MS.gene31829:intron | 35.0% |
| ! | GAATCTTGCACTTTGTGTTT+TGG | - | chr1.1:14429012-14429031 | MS.gene31829:CDS | 35.0% |
| ! | TTACGAGTCTGTTTCCTTTT+CGG | + | chr1.1:14428225-14428244 | None:intergenic | 35.0% |
| ! | TTATGTTGTGGTCGCAATTT+TGG | - | chr1.1:14429873-14429892 | MS.gene31829:CDS | 35.0% |
| ! | TTTTGTGCAAAAGCTTGAAC+TGG | + | chr1.1:14429343-14429362 | None:intergenic | 35.0% |
| !!! | TTGCACTTTGTGTTTTGGTT+TGG | - | chr1.1:14429017-14429036 | MS.gene31829:CDS | 35.0% |
| AAAGAAAACTGTGGAGGAGT+TGG | - | chr1.1:14430173-14430192 | MS.gene31829:CDS | 40.0% | |
| AACTCTGACAAGTCACAAGA+TGG | - | chr1.1:14428621-14428640 | MS.gene31829:intron | 40.0% | |
| AAGACGTGTCTGATAAGTCA+CGG | - | chr1.1:14427974-14427993 | MS.gene31829:intron | 40.0% | |
| ACATGCTTTGCCAAAGAAGA+AGG | - | chr1.1:14427583-14427602 | MS.gene31829:CDS | 40.0% | |
| ACATGTACTGTAGCAGAAAG+GGG | - | chr1.1:14428120-14428139 | MS.gene31829:intron | 40.0% | |
| ACTGATGACAGTCCTTATGA+TGG | - | chr1.1:14430147-14430166 | MS.gene31829:CDS | 40.0% | |
| AGAAGAAAAGGAAAGCGAGT+AGG | - | chr1.1:14428418-14428437 | MS.gene31829:intron | 40.0% | |
| AGAGGACATATCAAACAGTG+AGG | - | chr1.1:14428548-14428567 | MS.gene31829:intron | 40.0% | |
| AGTATTGCTAGATGTCACGA+AGG | - | chr1.1:14429088-14429107 | MS.gene31829:CDS | 40.0% | |
| ATTTCTCAGAGGCTGTACTT+TGG | - | chr1.1:14430113-14430132 | MS.gene31829:CDS | 40.0% | |
| CAACATGTACTGTAGCAGAA+AGG | - | chr1.1:14428118-14428137 | MS.gene31829:intron | 40.0% | |
| CAATTATGCTCAAAAGAGGG+AGG | - | chr1.1:14428158-14428177 | MS.gene31829:intron | 40.0% | |
| CATGTGCTGTAATTCCGAAA+AGG | - | chr1.1:14428208-14428227 | MS.gene31829:intron | 40.0% | |
| CTGCAAATTTCAACTCCTTC+GGG | + | chr1.1:14430210-14430229 | None:intergenic | 40.0% | |
| CTTTATCGACAGCAAATGCT+TGG | - | chr1.1:14428870-14428889 | MS.gene31829:CDS | 40.0% | |
| GAGGACATATCAAACAGTGA+GGG | - | chr1.1:14428549-14428568 | MS.gene31829:intron | 40.0% | |
| GATTTGTCATACAGTGAGGA+AGG | - | chr1.1:14427913-14427932 | MS.gene31829:intron | 40.0% | |
| GGATGCAGTGTTATGTATGA+AGG | - | chr1.1:14428836-14428855 | MS.gene31829:CDS | 40.0% | |
| GTATCTGATAGGCAAGGTAT+CGG | - | chr1.1:14428081-14428100 | MS.gene31829:intron | 40.0% | |
| TCCTGTTTGATGGAAAACAC+TGG | - | chr1.1:14429173-14429192 | MS.gene31829:intron | 40.0% | |
| TGAATCTGAAAATGACGACG+AGG | - | chr1.1:14428257-14428276 | MS.gene31829:intron | 40.0% | |
| TGGAAAACACTGGAGGATAA+AGG | - | chr1.1:14429183-14429202 | MS.gene31829:intron | 40.0% | |
| TGGTCTAAAGAAAACTGTGG+AGG | - | chr1.1:14430167-14430186 | MS.gene31829:CDS | 40.0% | |
| TGTATATGTCGATGGCAGTA+TGG | - | chr1.1:14429753-14429772 | MS.gene31829:CDS | 40.0% | |
| TGTTTGATGGAAAACACTGG+AGG | - | chr1.1:14429176-14429195 | MS.gene31829:intron | 40.0% | |
| TTAGTAAGTATGATGCTGCC+AGG | - | chr1.1:14428937-14428956 | MS.gene31829:CDS | 40.0% | |
| TTATCGACAGCAAATGCTTG+GGG | - | chr1.1:14428872-14428891 | MS.gene31829:CDS | 40.0% | |
| TTCTTCTTTGGCAAAGCATG+TGG | + | chr1.1:14427584-14427603 | None:intergenic | 40.0% | |
| TTGTATCTTCTCTACCTACC+TGG | + | chr1.1:14428958-14428977 | None:intergenic | 40.0% | |
| TTTCTCAGAGGCTGTACTTT+GGG | - | chr1.1:14430114-14430133 | MS.gene31829:CDS | 40.0% | |
| ! | AGAACTAGATTTTGCACCAG+TGG | + | chr1.1:14427467-14427486 | None:intergenic | 40.0% |
| ! | AGTGGATTTGTCATACAGTG+AGG | - | chr1.1:14427909-14427928 | MS.gene31829:intron | 40.0% |
| ! | CACCTCTTTCTGCTGTTTAA+CGG | - | chr1.1:14429923-14429942 | MS.gene31829:CDS | 40.0% |
| ! | CTCCCTCTTTTGAGCATAAT+TGG | + | chr1.1:14428160-14428179 | None:intergenic | 40.0% |
| ! | GAACTAGATTTTGCACCAGT+GGG | + | chr1.1:14427466-14427485 | None:intergenic | 40.0% |
| ! | GTTTGGAGCCTTCTATCAAA+TGG | - | chr1.1:14429034-14429053 | MS.gene31829:CDS | 40.0% |
| ! | TCCAGTGTTTTCCATCAAAC+AGG | + | chr1.1:14429177-14429196 | None:intergenic | 40.0% |
| ! | TCTGCTGTTTAACGGTGTTA+CGG | - | chr1.1:14429931-14429950 | MS.gene31829:CDS | 40.0% |
| ! | TGATGATGATGACTTAGGAG+TGG | - | chr1.1:14427891-14427910 | MS.gene31829:intron | 40.0% |
| ! | TGATGATGCTCATGATGATG+AGG | - | chr1.1:14428515-14428534 | MS.gene31829:intron | 40.0% |
| !! | ATTTTCGGAGACGCTTTAGA+TGG | + | chr1.1:14428446-14428465 | None:intergenic | 40.0% |
| AATTCAGAGGAAGAAAGGGC+CGG | - | chr1.1:14428767-14428786 | MS.gene31829:intron | 45.0% | |
| ACCTTCAACGTCCTGTTTGA+TGG | - | chr1.1:14429163-14429182 | MS.gene31829:intron | 45.0% | |
| ACGGCTTCTCAGTATATGCA+TGG | - | chr1.1:14429950-14429969 | MS.gene31829:CDS | 45.0% | |
| ACTGACATGCGTGCAGTATT+TGG | - | chr1.1:14428810-14428829 | MS.gene31829:CDS | 45.0% | |
| AGAAAGGGCCGGAAATTAAG+TGG | - | chr1.1:14428778-14428797 | MS.gene31829:intron | 45.0% | |
| AGACGTGTCTGATAAGTCAC+GGG | - | chr1.1:14427975-14427994 | MS.gene31829:intron | 45.0% | |
| AGATGGATGTAACGGTGATG+TGG | - | chr1.1:14428638-14428657 | MS.gene31829:intron | 45.0% | |
| CACCGTTAAACAGCAGAAAG+AGG | + | chr1.1:14429928-14429947 | None:intergenic | 45.0% | |
| CATAAGGACTGTCATCAGTG+AGG | + | chr1.1:14430146-14430165 | None:intergenic | 45.0% | |
| CATGCGTGCAGTATTTGGAA+AGG | - | chr1.1:14428815-14428834 | MS.gene31829:CDS | 45.0% | |
| CGGGATGATAAAACGTCTTC+AGG | - | chr1.1:14427826-14427845 | MS.gene31829:intron | 45.0% | |
| GAAAGGGCCGGAAATTAAGT+GGG | - | chr1.1:14428779-14428798 | MS.gene31829:intron | 45.0% | |
| GGTCGATGCAGTTGAAATTG+TGG | - | chr1.1:14429829-14429848 | MS.gene31829:CDS | 45.0% | |
| TAAGTATGATGCTGCCAGGT+AGG | - | chr1.1:14428941-14428960 | MS.gene31829:CDS | 45.0% | |
| TACTGTAGCAGAAAGGGGAA+AGG | - | chr1.1:14428125-14428144 | MS.gene31829:intron | 45.0% | |
| TCCATCAAACAGGACGTTGA+AGG | + | chr1.1:14429167-14429186 | None:intergenic | 45.0% | |
| TCGCTCATAACGACATTGCA+AGG | + | chr1.1:14427685-14427704 | None:intergenic | 45.0% | |
| TTCTGATTCACAGGACGTGT+CGG | - | chr1.1:14428710-14428729 | MS.gene31829:intron | 45.0% | |
| ! | ATTGCAAGGCCGTTTCCTTT+TGG | + | chr1.1:14427671-14427690 | None:intergenic | 45.0% |
| !!! | TGTGGTCGCAATTTTGGTTG+CGG | - | chr1.1:14429879-14429898 | MS.gene31829:CDS | 45.0% |
| AGGAAACATTTGGCCGTGAC+GGG | - | chr1.1:14428907-14428926 | MS.gene31829:CDS | 50.0% | |
| GAGGAAACATTTGGCCGTGA+CGG | - | chr1.1:14428906-14428925 | MS.gene31829:CDS | 50.0% | |
| GCTTGGGGAACAGATGTATG+AGG | - | chr1.1:14428887-14428906 | MS.gene31829:CDS | 50.0% | |
| TACTAAATCCACGCCCGTCA+CGG | + | chr1.1:14428923-14428942 | None:intergenic | 50.0% | |
| TCGCTAGATAGGCAAGGTAG+TGG | - | chr1.1:14427544-14427563 | MS.gene31829:CDS | 50.0% | |
| ! | ACAGCAGAAAGAGGTGTGTC+TGG | + | chr1.1:14429919-14429938 | None:intergenic | 50.0% |
| ! | TCAGAGGCTGTACTTTGGGA+GGG | - | chr1.1:14430118-14430137 | MS.gene31829:CDS | 50.0% |
| CTCAGAGGCTGTACTTTGGG+AGG | - | chr1.1:14430117-14430136 | MS.gene31829:CDS | 55.0% | |
| GATTCACAGGACGTGTCGGA+TGG | - | chr1.1:14428714-14428733 | MS.gene31829:intron | 55.0% | |
| GCAGCATCTACTACACCCAC+TGG | - | chr1.1:14427448-14427467 | MS.gene31829:CDS | 55.0% | |
| CGAGTCTGCAGACGACGCCT+TGG | + | chr1.1:14427784-14427803 | None:intergenic | 65.0% | |
| GGCGTCGTCTGCAGACTCGA+AGG | - | chr1.1:14427785-14427804 | MS.gene31829:intron | 65.0% | |
| !! | ACATTTGGCCGTGACGGGCG+TGG | - | chr1.1:14428912-14428931 | MS.gene31829:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14427445 | 14430302 | 14427445 | ID=MS.gene31829 |
| chr1.1 | mRNA | 14427445 | 14430302 | 14427445 | ID=MS.gene31829.t1;Parent=MS.gene31829 |
| chr1.1 | exon | 14429444 | 14430302 | 14429444 | ID=MS.gene31829.t1.exon1;Parent=MS.gene31829.t1 |
| chr1.1 | CDS | 14429444 | 14430302 | 14429444 | ID=cds.MS.gene31829.t1;Parent=MS.gene31829.t1 |
| chr1.1 | exon | 14428789 | 14429131 | 14428789 | ID=MS.gene31829.t1.exon2;Parent=MS.gene31829.t1 |
| chr1.1 | CDS | 14428789 | 14429131 | 14428789 | ID=cds.MS.gene31829.t1;Parent=MS.gene31829.t1 |
| chr1.1 | exon | 14427445 | 14427625 | 14427445 | ID=MS.gene31829.t1.exon3;Parent=MS.gene31829.t1 |
| chr1.1 | CDS | 14427445 | 14427625 | 14427445 | ID=cds.MS.gene31829.t1;Parent=MS.gene31829.t1 |
| Gene Sequence |
| Protein sequence |
