Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31835.t1 | XP_013466398.1 | 94.9 | 216 | 10 | 1 | 1 | 215 | 8 | 223 | 3.00E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31835.t1 | Q9LU33 | 52.3 | 218 | 99 | 1 | 2 | 214 | 15 | 232 | 1.4e-57 | 224.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31835.t1 | A0A072VEL1 | 94.9 | 216 | 10 | 1 | 1 | 215 | 8 | 223 | 2.2e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene31835 | 0.804739 | 1.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31835.t1 | MTR_1g028960 | 94.907 | 216 | 10 | 1 | 1 | 215 | 8 | 223 | 1.55e-148 | 412 |
| MS.gene31835.t1 | MTR_1g028970 | 91.163 | 215 | 19 | 0 | 1 | 215 | 9 | 223 | 2.01e-143 | 399 |
| MS.gene31835.t1 | MTR_1g028970 | 91.667 | 204 | 17 | 0 | 1 | 204 | 9 | 212 | 1.77e-136 | 381 |
| MS.gene31835.t1 | MTR_3g090530 | 68.519 | 216 | 67 | 1 | 1 | 215 | 7 | 222 | 9.58e-109 | 311 |
| MS.gene31835.t1 | MTR_1g028970 | 91.720 | 157 | 13 | 0 | 1 | 157 | 9 | 165 | 6.59e-103 | 295 |
| MS.gene31835.t1 | MTR_3g090530 | 68.780 | 205 | 63 | 1 | 1 | 204 | 7 | 211 | 5.53e-102 | 294 |
| MS.gene31835.t1 | MTR_3g090530 | 68.354 | 158 | 49 | 1 | 1 | 157 | 7 | 164 | 5.69e-77 | 229 |
| MS.gene31835.t1 | MTR_3g090530 | 67.550 | 151 | 48 | 1 | 66 | 215 | 7 | 157 | 1.63e-71 | 214 |
| MS.gene31835.t1 | MTR_3g090530 | 67.857 | 140 | 44 | 1 | 66 | 204 | 7 | 146 | 3.82e-65 | 198 |
| MS.gene31835.t1 | MTR_3g090530 | 66.667 | 93 | 30 | 1 | 66 | 157 | 7 | 99 | 9.31e-40 | 132 |
| MS.gene31835.t1 | MTR_1g075710 | 33.511 | 188 | 121 | 1 | 28 | 215 | 19 | 202 | 2.61e-38 | 132 |
| MS.gene31835.t1 | MTR_1g041495 | 31.383 | 188 | 125 | 1 | 28 | 215 | 19 | 202 | 1.35e-33 | 119 |
| MS.gene31835.t1 | MTR_1g041495 | 29.949 | 197 | 125 | 2 | 28 | 215 | 19 | 211 | 2.04e-30 | 111 |
| MS.gene31835.t1 | MTR_1g075700 | 35.862 | 145 | 89 | 1 | 28 | 172 | 19 | 159 | 1.03e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31835.t1 | AT1G21360 | 52.582 | 213 | 100 | 1 | 2 | 214 | 11 | 222 | 2.27e-76 | 229 |
| MS.gene31835.t1 | AT3G21260 | 52.294 | 218 | 99 | 1 | 2 | 214 | 15 | 232 | 2.08e-69 | 212 |
| MS.gene31835.t1 | AT1G21360 | 56.410 | 156 | 67 | 1 | 2 | 157 | 11 | 165 | 2.98e-57 | 180 |
| MS.gene31835.t1 | AT1G21360 | 51.250 | 160 | 78 | 0 | 55 | 214 | 1 | 160 | 8.77e-54 | 170 |
| MS.gene31835.t1 | AT3G21260 | 54.422 | 147 | 67 | 0 | 68 | 214 | 2 | 148 | 3.06e-46 | 150 |
| MS.gene31835.t1 | AT3G21260 | 53.846 | 143 | 66 | 0 | 72 | 214 | 1 | 143 | 1.48e-44 | 145 |
| MS.gene31835.t1 | AT2G33470 | 33.516 | 182 | 117 | 1 | 34 | 215 | 25 | 202 | 1.91e-34 | 122 |
| MS.gene31835.t1 | AT2G33470 | 33.516 | 182 | 117 | 1 | 34 | 215 | 25 | 202 | 1.91e-34 | 122 |
Find 37 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTCTCTATATGTTATT+TGG | 0.165815 | 1.1:+14534527 | MS.gene31835:CDS |
| ACTAAATTTAGATTCGTTAT+TGG | 0.175775 | 1.1:-14535705 | None:intergenic |
| TTTAGTTGAAATATTGAAAT+TGG | 0.200840 | 1.1:+14535722 | MS.gene31835:CDS |
| AAAATAATTACAGATAAAAT+AGG | 0.215881 | 1.1:+14534665 | MS.gene31835:intron |
| TAAGCAGAAAATGCAGATAT+TGG | 0.283442 | 1.1:+14536457 | MS.gene31835:CDS |
| AAAAGATCCTGAAAAGAAAA+TGG | 0.298748 | 1.1:+14536044 | MS.gene31835:CDS |
| GTTGTGATAGTTAAGCCTTC+TGG | 0.336106 | 1.1:+14534468 | MS.gene31835:CDS |
| TATTTGGTTCTACAAGTTCT+TGG | 0.341649 | 1.1:+14534543 | MS.gene31835:CDS |
| GGTCTTCATCTTCAGTCTTA+AGG | 0.359906 | 1.1:-14536424 | None:intergenic |
| GCTGCAGTAAGGCCTTTGTT+TGG | 0.415497 | 1.1:+14535778 | MS.gene31835:CDS |
| CACTAAAACCATGGCATGGA+TGG | 0.433073 | 1.1:+14536097 | MS.gene31835:CDS |
| TGTCTCAAAACAGCCATTGT+TGG | 0.436087 | 1.1:-14534689 | None:intergenic |
| AACAGAAGGCAATGCAAAGA+AGG | 0.452284 | 1.1:+14535749 | MS.gene31835:CDS |
| AAATAATTACAGATAAAATA+GGG | 0.461666 | 1.1:+14534666 | MS.gene31835:intron |
| TTTGCAGAGATTATATAACT+TGG | 0.500380 | 1.1:+14536596 | MS.gene31835:intron |
| ATAATAACGAGGTGAAATCC+AGG | 0.506807 | 1.1:-14536008 | None:intergenic |
| CAGTGGATATCCTCAAGAAA+AGG | 0.513380 | 1.1:-14536494 | None:intergenic |
| AGGCCTTTGTTTGGCTCACA+AGG | 0.523024 | 1.1:+14535787 | MS.gene31835:CDS |
| ATAGAGAGGAAAGGCTGAGT+GGG | 0.530057 | 1.1:-14534516 | None:intergenic |
| ACAGAAGGCAATGCAAAGAA+GGG | 0.552195 | 1.1:+14535750 | MS.gene31835:CDS |
| GAAGGGGTCTAGCTGCAGTA+AGG | 0.554936 | 1.1:+14535767 | MS.gene31835:CDS |
| AGATGTGTATCAAAATATCA+AGG | 0.576462 | 1.1:+14534712 | MS.gene31835:CDS |
| GATGAAATCCATCCATGCCA+TGG | 0.583812 | 1.1:-14536105 | None:intergenic |
| TTGAAATTGGAAGCAACAGA+AGG | 0.584098 | 1.1:+14535735 | MS.gene31835:CDS |
| ATGAAGTTACACTAAAACCA+TGG | 0.602033 | 1.1:+14536088 | MS.gene31835:CDS |
| GAACCAAATAACATATAGAG+AGG | 0.617617 | 1.1:-14534530 | None:intergenic |
| AGATAAAATAGGGCCAACAA+TGG | 0.630676 | 1.1:+14534676 | MS.gene31835:intron |
| AAATAACATATAGAGAGGAA+AGG | 0.630937 | 1.1:-14534525 | None:intergenic |
| GTTACACTAAAACCATGGCA+TGG | 0.631869 | 1.1:+14536093 | MS.gene31835:CDS |
| CTACATATTCTACAGGACCC+TGG | 0.634914 | 1.1:+14535990 | MS.gene31835:intron |
| TAATAACGAGGTGAAATCCA+GGG | 0.641040 | 1.1:-14536007 | None:intergenic |
| CAGAAGGCAATGCAAAGAAG+GGG | 0.645808 | 1.1:+14535751 | MS.gene31835:CDS |
| TCACCTTGTGAGCCAAACAA+AGG | 0.647841 | 1.1:-14535790 | None:intergenic |
| TAGAATTTGTAATAATAACG+AGG | 0.659525 | 1.1:-14536019 | None:intergenic |
| TAGAGAGGAAAGGCTGAGTG+GGG | 0.664205 | 1.1:-14534515 | None:intergenic |
| TATAGAGAGGAAAGGCTGAG+TGG | 0.667479 | 1.1:-14534517 | None:intergenic |
| TCAAGCTTACTAAGATACAG+TGG | 0.685224 | 1.1:-14536511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTATAAAATATTT+AGG | + | chr1.1:14536255-14536274 | MS.gene31835:intron | 0.0% |
| !! | AAAATAATTACAGATAAAAT+AGG | + | chr1.1:14534665-14534684 | MS.gene31835:intron | 10.0% |
| !! | AAATAATTACAGATAAAATA+GGG | + | chr1.1:14534666-14534685 | MS.gene31835:intron | 10.0% |
| !! | TATTGAAGAAATTTATAAAT+AGG | + | chr1.1:14535917-14535936 | MS.gene31835:intron | 10.0% |
| !!! | GTTATAATTTTTTTTATCTT+TGG | + | chr1.1:14535261-14535280 | MS.gene31835:intron | 10.0% |
| !!! | TTTATAAAATATTTAGGATT+CGG | + | chr1.1:14536261-14536280 | MS.gene31835:intron | 10.0% |
| !! | AACACATTGTTTATTAAATA+TGG | + | chr1.1:14534640-14534659 | MS.gene31835:intron | 15.0% |
| !! | AAGAAGAAATTTAACATAAA+AGG | + | chr1.1:14535449-14535468 | MS.gene31835:intron | 15.0% |
| !! | ACACATTGTTTATTAAATAT+GGG | + | chr1.1:14534641-14534660 | MS.gene31835:intron | 15.0% |
| !! | ATATTATAATGAAAAGAGAA+GGG | - | chr1.1:14535519-14535538 | None:intergenic | 15.0% |
| !! | TATATTATAATGAAAAGAGA+AGG | - | chr1.1:14535520-14535539 | None:intergenic | 15.0% |
| !! | TTTAGTTGAAATATTGAAAT+TGG | + | chr1.1:14535722-14535741 | MS.gene31835:CDS | 15.0% |
| !!! | TCTCTTTTCATTATAATATA+GGG | + | chr1.1:14535520-14535539 | MS.gene31835:intron | 15.0% |
| !!! | TTCTCTTTTCATTATAATAT+AGG | + | chr1.1:14535519-14535538 | MS.gene31835:intron | 15.0% |
| !! | AAGCTACTCAAATTATTAAA+AGG | - | chr1.1:14535051-14535070 | None:intergenic | 20.0% |
| !! | ACAAAATTGTAATAAGAGAA+AGG | - | chr1.1:14534810-14534829 | None:intergenic | 20.0% |
| !! | ACTAAATTTAGATTCGTTAT+TGG | - | chr1.1:14535708-14535727 | None:intergenic | 20.0% |
| !! | AGGTGTGATTATATTATTAT+AGG | - | chr1.1:14535820-14535839 | None:intergenic | 20.0% |
| !! | ATGAAATACAGATTGAAAAA+TGG | - | chr1.1:14536172-14536191 | None:intergenic | 20.0% |
| !! | ATGAATGATGTTAGTTATTA+GGG | + | chr1.1:14534857-14534876 | MS.gene31835:intron | 20.0% |
| !! | ATTTCATGCTATTAATTAGA+TGG | + | chr1.1:14536185-14536204 | MS.gene31835:intron | 20.0% |
| !! | TAATAAGAGAAAGGTTAAAT+GGG | - | chr1.1:14534801-14534820 | None:intergenic | 20.0% |
| !! | TAGAATTTGTAATAATAACG+AGG | - | chr1.1:14536022-14536041 | None:intergenic | 20.0% |
| !! | TGAAACGCAATATATATTTA+GGG | - | chr1.1:14536359-14536378 | None:intergenic | 20.0% |
| !! | TTCTCTACCAAAAAAAAAAT+TGG | + | chr1.1:14535228-14535247 | MS.gene31835:intron | 20.0% |
| !!! | AAAGGTATCATCTTAATTTA+TGG | + | chr1.1:14535965-14535984 | MS.gene31835:intron | 20.0% |
| !!! | TCAATGAATGTTTTATTTTC+TGG | - | chr1.1:14536401-14536420 | None:intergenic | 20.0% |
| !!! | TTCTACAATATTTAGAACTA+TGG | + | chr1.1:14535010-14535029 | MS.gene31835:intron | 20.0% |
| ! | AAAAGATCCTGAAAAGAAAA+TGG | + | chr1.1:14536044-14536063 | MS.gene31835:CDS | 25.0% |
| ! | AAATAACATATAGAGAGGAA+AGG | - | chr1.1:14534528-14534547 | None:intergenic | 25.0% |
| ! | AGATAAAGTTTGCAATATGT+AGG | - | chr1.1:14536559-14536578 | None:intergenic | 25.0% |
| ! | AGATGTGTATCAAAATATCA+AGG | + | chr1.1:14534712-14534731 | MS.gene31835:CDS | 25.0% |
| ! | CTAAATATATATTGCGTTTC+AGG | + | chr1.1:14536358-14536377 | MS.gene31835:intron | 25.0% |
| ! | CTAATAATCTGATAACTACT+CGG | - | chr1.1:14534961-14534980 | None:intergenic | 25.0% |
| ! | CTGAAACGCAATATATATTT+AGG | - | chr1.1:14536360-14536379 | None:intergenic | 25.0% |
| ! | GATGAATGATGTTAGTTATT+AGG | + | chr1.1:14534856-14534875 | MS.gene31835:intron | 25.0% |
| ! | GTAATAAGAGAAAGGTTAAA+TGG | - | chr1.1:14534802-14534821 | None:intergenic | 25.0% |
| ! | GTTAGCTGGTTATAAAATTA+AGG | + | chr1.1:14535490-14535509 | MS.gene31835:intron | 25.0% |
| ! | TTTAATGCACAACTAATCAT+TGG | - | chr1.1:14535642-14535661 | None:intergenic | 25.0% |
| ! | TTTCCTCTCTATATGTTATT+TGG | + | chr1.1:14534527-14534546 | MS.gene31835:CDS | 25.0% |
| ! | TTTGCAGAGATTATATAACT+TGG | + | chr1.1:14536596-14536615 | MS.gene31835:intron | 25.0% |
| !! | ATTTTCTCCATTTTCTTTTC+AGG | - | chr1.1:14536054-14536073 | None:intergenic | 25.0% |
| !! | TTTTATTGAAGAGCTTTCTA+TGG | + | chr1.1:14534446-14534465 | MS.gene31835:CDS | 25.0% |
| !!! | AAACGTGCCAATTTTTTTTT+TGG | - | chr1.1:14535238-14535257 | None:intergenic | 25.0% |
| !!! | ATAAAACGAGAAGCATTATT+AGG | - | chr1.1:14535840-14535859 | None:intergenic | 25.0% |
| !!! | ATGCGAAATAGAATGTTTTT+TGG | + | chr1.1:14535086-14535105 | MS.gene31835:intron | 25.0% |
| !!! | TGCGAAATAGAATGTTTTTT+GGG | + | chr1.1:14535087-14535106 | MS.gene31835:intron | 25.0% |
| AATATATATTGCGTTTCAGG+TGG | + | chr1.1:14536361-14536380 | MS.gene31835:intron | 30.0% | |
| AATCTACACACTTAGATCAA+TGG | - | chr1.1:14535376-14535395 | None:intergenic | 30.0% | |
| ATCTACACACTTAGATCAAT+GGG | - | chr1.1:14535375-14535394 | None:intergenic | 30.0% | |
| ATGAAGTTACACTAAAACCA+TGG | + | chr1.1:14536088-14536107 | MS.gene31835:CDS | 30.0% | |
| GAACCAAATAACATATAGAG+AGG | - | chr1.1:14534533-14534552 | None:intergenic | 30.0% | |
| TAAAGATAGGACACATGTTA+AGG | - | chr1.1:14535289-14535308 | None:intergenic | 30.0% | |
| TAAGCAGAAAATGCAGATAT+TGG | + | chr1.1:14536457-14536476 | MS.gene31835:CDS | 30.0% | |
| TAGTAAGCTTGATCATCAAT+TGG | + | chr1.1:14536522-14536541 | MS.gene31835:intron | 30.0% | |
| TGTGCGAGAAAAAAAAACAT+GGG | - | chr1.1:14535336-14535355 | None:intergenic | 30.0% | |
| TTCCAATCTCTACAATCAAA+CGG | - | chr1.1:14535667-14535686 | None:intergenic | 30.0% | |
| ! | CTAAAGTGTTATAAGTTAGC+TGG | + | chr1.1:14535476-14535495 | MS.gene31835:intron | 30.0% |
| ! | GAATTGAAAGTTTTCAGCTA+TGG | - | chr1.1:14534750-14534769 | None:intergenic | 30.0% |
| !! | TATTTGGTTCTACAAGTTCT+TGG | + | chr1.1:14534543-14534562 | MS.gene31835:CDS | 30.0% |
| !!! | TATAGGGATTGTTTTTGTGT+CGG | + | chr1.1:14535536-14535555 | MS.gene31835:intron | 30.0% |
| AGATAAAATAGGGCCAACAA+TGG | + | chr1.1:14534676-14534695 | MS.gene31835:intron | 35.0% | |
| ATAATAACGAGGTGAAATCC+AGG | - | chr1.1:14536011-14536030 | None:intergenic | 35.0% | |
| CAGCAATATGTGCTAAAGAT+AGG | - | chr1.1:14535302-14535321 | None:intergenic | 35.0% | |
| GTGTGCGAGAAAAAAAAACA+TGG | - | chr1.1:14535337-14535356 | None:intergenic | 35.0% | |
| TAAGAGAAAGGTTAAATGGG+TGG | - | chr1.1:14534798-14534817 | None:intergenic | 35.0% | |
| TAATAACGAGGTGAAATCCA+GGG | - | chr1.1:14536010-14536029 | None:intergenic | 35.0% | |
| TCAAGCTTACTAAGATACAG+TGG | - | chr1.1:14536514-14536533 | None:intergenic | 35.0% | |
| TTCCGTTTGATTGTAGAGAT+TGG | + | chr1.1:14535662-14535681 | MS.gene31835:intron | 35.0% | |
| TTGAAATTGGAAGCAACAGA+AGG | + | chr1.1:14535735-14535754 | MS.gene31835:CDS | 35.0% | |
| ! | TTTTCTGCTTAAGCATGTCA+CGG | - | chr1.1:14536448-14536467 | None:intergenic | 35.0% |
| !! | TATGGTGCTACATATTCTAC+AGG | + | chr1.1:14535983-14536002 | MS.gene31835:intron | 35.0% |
| AACAGAAGGCAATGCAAAGA+AGG | + | chr1.1:14535749-14535768 | MS.gene31835:CDS | 40.0% | |
| ACAGAAGGCAATGCAAAGAA+GGG | + | chr1.1:14535750-14535769 | MS.gene31835:CDS | 40.0% | |
| CAGTGGATATCCTCAAGAAA+AGG | - | chr1.1:14536497-14536516 | None:intergenic | 40.0% | |
| GGTACTAGCTAAGAAATCCA+GGG | - | chr1.1:14534889-14534908 | None:intergenic | 40.0% | |
| GGTCTTCATCTTCAGTCTTA+AGG | - | chr1.1:14536427-14536446 | None:intergenic | 40.0% | |
| GTTACACTAAAACCATGGCA+TGG | + | chr1.1:14536093-14536112 | MS.gene31835:CDS | 40.0% | |
| GTTGTGATAGTTAAGCCTTC+TGG | + | chr1.1:14534468-14534487 | MS.gene31835:CDS | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | - | chr1.1:14534692-14534711 | None:intergenic | 40.0% | |
| ! | GCTTCAAGATTTTCTCCAGA+AGG | - | chr1.1:14534486-14534505 | None:intergenic | 40.0% |
| ! | TCTACTTGTGCCTTTTCTTG+AGG | + | chr1.1:14536484-14536503 | MS.gene31835:CDS | 40.0% |
| !!! | GGATTGTTTTTGTGTCGGAT+GGG | + | chr1.1:14535541-14535560 | MS.gene31835:intron | 40.0% |
| AGCTAAGAAATCCAGGGTTC+AGG | - | chr1.1:14534883-14534902 | None:intergenic | 45.0% | |
| ATAGAGAGGAAAGGCTGAGT+GGG | - | chr1.1:14534519-14534538 | None:intergenic | 45.0% | |
| ATTGAGCTGTGGGACACAAA+AGG | - | chr1.1:14534911-14534930 | None:intergenic | 45.0% | |
| CACTAAAACCATGGCATGGA+TGG | + | chr1.1:14536097-14536116 | MS.gene31835:CDS | 45.0% | |
| CAGAAGGCAATGCAAAGAAG+GGG | + | chr1.1:14535751-14535770 | MS.gene31835:CDS | 45.0% | |
| CTACATATTCTACAGGACCC+TGG | + | chr1.1:14535990-14536009 | MS.gene31835:intron | 45.0% | |
| GATGAAATCCATCCATGCCA+TGG | - | chr1.1:14536108-14536127 | None:intergenic | 45.0% | |
| GGGTACTAGCTAAGAAATCC+AGG | - | chr1.1:14534890-14534909 | None:intergenic | 45.0% | |
| TATAGAGAGGAAAGGCTGAG+TGG | - | chr1.1:14534520-14534539 | None:intergenic | 45.0% | |
| TCACCTTGTGAGCCAAACAA+AGG | - | chr1.1:14535793-14535812 | None:intergenic | 45.0% | |
| TTGAGCTGTGGGACACAAAA+GGG | - | chr1.1:14534910-14534929 | None:intergenic | 45.0% | |
| !! | AGTCTCAAGCATTGAGCTGT+GGG | - | chr1.1:14534921-14534940 | None:intergenic | 45.0% |
| !! | TAGTCTCAAGCATTGAGCTG+TGG | - | chr1.1:14534922-14534941 | None:intergenic | 45.0% |
| !!! | GGGATTGTTTTTGTGTCGGA+TGG | + | chr1.1:14535540-14535559 | MS.gene31835:intron | 45.0% |
| !!! | ATAATTTTTATTCAAAAAAA+AGG | + | chr1.1:14535947-14535966 | MS.gene31835:intron | 5.0% |
| AGTTATTAGGGCCTGAACCC+TGG | + | chr1.1:14534869-14534888 | MS.gene31835:intron | 50.0% | |
| CGTGCTAATATGTGCCCCTA+GGG | + | chr1.1:14535111-14535130 | MS.gene31835:intron | 50.0% | |
| GCTGCAGTAAGGCCTTTGTT+TGG | + | chr1.1:14535778-14535797 | MS.gene31835:CDS | 50.0% | |
| TAATATGTGCCCCTAGGGCA+GGG | + | chr1.1:14535116-14535135 | MS.gene31835:intron | 50.0% | |
| TAGAGAGGAAAGGCTGAGTG+GGG | - | chr1.1:14534518-14534537 | None:intergenic | 50.0% | |
| TCGTGCTAATATGTGCCCCT+AGG | + | chr1.1:14535110-14535129 | MS.gene31835:intron | 50.0% | |
| ! | AGGCCTTTGTTTGGCTCACA+AGG | + | chr1.1:14535787-14535806 | MS.gene31835:CDS | 50.0% |
| AATATGTGCCCCTAGGGCAG+GGG | + | chr1.1:14535117-14535136 | MS.gene31835:intron | 55.0% | |
| CTAATATGTGCCCCTAGGGC+AGG | + | chr1.1:14535115-14535134 | MS.gene31835:intron | 55.0% | |
| GAAGGGGTCTAGCTGCAGTA+AGG | + | chr1.1:14535767-14535786 | MS.gene31835:CDS | 55.0% | |
| TAACATGTGCCCCTGCCCTA+GGG | - | chr1.1:14535129-14535148 | None:intergenic | 55.0% | |
| TTAACATGTGCCCCTGCCCT+AGG | - | chr1.1:14535130-14535149 | None:intergenic | 55.0% | |
| AACATGTGCCCCTGCCCTAG+GGG | - | chr1.1:14535128-14535147 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14534420 | 14536638 | 14534420 | ID=MS.gene31835 |
| chr1.1 | mRNA | 14534420 | 14536638 | 14534420 | ID=MS.gene31835.t1;Parent=MS.gene31835 |
| chr1.1 | exon | 14534420 | 14534564 | 14534420 | ID=MS.gene31835.t1.exon1;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14534420 | 14534564 | 14534420 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| chr1.1 | exon | 14534678 | 14534733 | 14534678 | ID=MS.gene31835.t1.exon2;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14534678 | 14534733 | 14534678 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| chr1.1 | exon | 14535678 | 14535808 | 14535678 | ID=MS.gene31835.t1.exon3;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14535678 | 14535808 | 14535678 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| chr1.1 | exon | 14536005 | 14536140 | 14536005 | ID=MS.gene31835.t1.exon4;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14536005 | 14536140 | 14536005 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| chr1.1 | exon | 14536380 | 14536523 | 14536380 | ID=MS.gene31835.t1.exon5;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14536380 | 14536523 | 14536380 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| chr1.1 | exon | 14536603 | 14536638 | 14536603 | ID=MS.gene31835.t1.exon6;Parent=MS.gene31835.t1 |
| chr1.1 | CDS | 14536603 | 14536638 | 14536603 | ID=cds.MS.gene31835.t1;Parent=MS.gene31835.t1 |
| Gene Sequence |
| Protein sequence |