Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31937.t1 | XP_013457050.1 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 6.20E-81 | 310.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31937.t1 | Q40152 | 57.6 | 99 | 37 | 1 | 31 | 129 | 37 | 130 | 5.7e-27 | 122.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31937.t1 | G7ZZ89 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 4.4e-81 | 310.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31937.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052478 | MS.gene31937 | 0.818037 | 2.42E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31937.t1 | MTR_4g088900 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.17e-150 | 416 |
MS.gene31937.t1 | MTR_7g091370 | 44.318 | 176 | 77 | 4 | 31 | 199 | 20 | 181 | 4.42e-39 | 134 |
MS.gene31937.t1 | MTR_5g010680 | 37.931 | 203 | 88 | 4 | 30 | 199 | 21 | 218 | 4.58e-39 | 137 |
MS.gene31937.t1 | MTR_1g100777 | 36.585 | 205 | 103 | 4 | 17 | 203 | 4 | 199 | 4.35e-36 | 129 |
MS.gene31937.t1 | MTR_1g071360 | 41.341 | 179 | 85 | 4 | 31 | 202 | 30 | 195 | 5.42e-35 | 127 |
MS.gene31937.t1 | MTR_1g071360 | 41.341 | 179 | 85 | 4 | 31 | 202 | 27 | 192 | 6.50e-35 | 127 |
MS.gene31937.t1 | MTR_5g089170 | 38.547 | 179 | 97 | 3 | 30 | 200 | 22 | 195 | 1.56e-34 | 123 |
MS.gene31937.t1 | MTR_3g101870 | 35.349 | 215 | 90 | 3 | 30 | 200 | 21 | 230 | 1.19e-33 | 124 |
MS.gene31937.t1 | MTR_0020s0020 | 54.545 | 99 | 40 | 1 | 31 | 129 | 31 | 124 | 1.45e-33 | 123 |
MS.gene31937.t1 | MTR_6g043060 | 55.102 | 98 | 39 | 1 | 32 | 129 | 21 | 113 | 3.76e-33 | 121 |
MS.gene31937.t1 | MTR_1g102860 | 42.683 | 164 | 84 | 3 | 31 | 192 | 38 | 193 | 8.45e-33 | 120 |
MS.gene31937.t1 | MTR_5g017470 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 1.01e-32 | 119 |
MS.gene31937.t1 | MTR_5g029680 | 54.000 | 100 | 41 | 1 | 30 | 129 | 29 | 123 | 3.56e-32 | 122 |
MS.gene31937.t1 | MTR_1g061170 | 41.935 | 155 | 79 | 4 | 27 | 175 | 38 | 187 | 9.15e-32 | 120 |
MS.gene31937.t1 | MTR_7g095680 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 1.89e-31 | 117 |
MS.gene31937.t1 | MTR_2g100670 | 39.888 | 178 | 91 | 5 | 31 | 207 | 31 | 193 | 3.53e-31 | 116 |
MS.gene31937.t1 | MTR_2g100680 | 47.009 | 117 | 51 | 2 | 13 | 129 | 17 | 122 | 1.43e-30 | 117 |
MS.gene31937.t1 | MTR_2g100670 | 39.888 | 178 | 91 | 5 | 31 | 207 | 139 | 301 | 1.49e-30 | 116 |
MS.gene31937.t1 | MTR_4g077970 | 54.082 | 98 | 40 | 1 | 33 | 130 | 12 | 104 | 6.10e-30 | 115 |
MS.gene31937.t1 | MTR_8g083100 | 54.167 | 96 | 39 | 1 | 34 | 129 | 23 | 113 | 1.03e-29 | 115 |
MS.gene31937.t1 | MTR_8g087540 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 1.48e-29 | 113 |
MS.gene31937.t1 | MTR_3g104550 | 38.372 | 172 | 95 | 4 | 31 | 199 | 44 | 207 | 5.83e-29 | 111 |
MS.gene31937.t1 | MTR_2g017890 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 2.58e-28 | 109 |
MS.gene31937.t1 | MTR_8g105780 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 2.90e-26 | 104 |
MS.gene31937.t1 | MTR_6g086805 | 48.980 | 98 | 45 | 1 | 32 | 129 | 10 | 102 | 3.68e-26 | 103 |
MS.gene31937.t1 | MTR_4g045757 | 50.704 | 71 | 29 | 2 | 33 | 102 | 14 | 79 | 5.38e-14 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31937.t1 | AT5G62020 | 34.518 | 197 | 98 | 3 | 30 | 200 | 20 | 211 | 7.11e-36 | 128 |
MS.gene31937.t1 | AT4G36990 | 37.264 | 212 | 100 | 5 | 22 | 211 | 3 | 203 | 7.45e-36 | 127 |
MS.gene31937.t1 | AT2G41690 | 37.949 | 195 | 100 | 4 | 21 | 199 | 28 | 217 | 2.65e-34 | 122 |
MS.gene31937.t1 | AT4G17750 | 55.446 | 101 | 40 | 1 | 30 | 130 | 49 | 144 | 1.71e-33 | 125 |
MS.gene31937.t1 | AT1G46264 | 48.305 | 118 | 56 | 1 | 30 | 147 | 31 | 143 | 5.09e-33 | 121 |
MS.gene31937.t1 | AT4G11660 | 53.465 | 101 | 42 | 1 | 30 | 130 | 56 | 151 | 2.62e-32 | 120 |
MS.gene31937.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 3.27e-32 | 120 |
MS.gene31937.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 3.27e-32 | 120 |
MS.gene31937.t1 | AT4G13980 | 37.569 | 181 | 90 | 3 | 34 | 211 | 24 | 184 | 4.17e-32 | 121 |
MS.gene31937.t1 | AT1G32330 | 52.000 | 100 | 43 | 1 | 30 | 129 | 34 | 128 | 1.25e-31 | 120 |
MS.gene31937.t1 | AT1G32330 | 52.000 | 100 | 43 | 1 | 30 | 129 | 34 | 128 | 1.27e-31 | 120 |
MS.gene31937.t1 | AT5G43840 | 50.450 | 111 | 50 | 1 | 31 | 141 | 17 | 122 | 1.39e-31 | 116 |
MS.gene31937.t1 | AT3G22830 | 52.000 | 100 | 43 | 1 | 31 | 130 | 59 | 153 | 2.14e-31 | 118 |
MS.gene31937.t1 | AT3G63350 | 54.082 | 98 | 40 | 1 | 31 | 128 | 26 | 118 | 1.26e-30 | 114 |
MS.gene31937.t1 | AT5G16820 | 52.427 | 103 | 44 | 1 | 27 | 129 | 21 | 118 | 1.28e-30 | 117 |
MS.gene31937.t1 | AT5G16820 | 52.427 | 103 | 44 | 1 | 27 | 129 | 21 | 118 | 1.28e-30 | 117 |
MS.gene31937.t1 | AT2G26150 | 39.053 | 169 | 86 | 4 | 31 | 193 | 42 | 199 | 2.71e-30 | 114 |
MS.gene31937.t1 | AT2G26150 | 39.053 | 169 | 86 | 4 | 31 | 193 | 42 | 199 | 2.71e-30 | 114 |
MS.gene31937.t1 | AT3G51910 | 47.414 | 116 | 54 | 3 | 30 | 144 | 26 | 135 | 2.36e-29 | 110 |
MS.gene31937.t1 | AT3G02990 | 51.546 | 97 | 42 | 1 | 33 | 129 | 23 | 114 | 1.36e-27 | 108 |
MS.gene31937.t1 | AT3G24520 | 45.370 | 108 | 54 | 1 | 32 | 139 | 16 | 118 | 2.11e-27 | 106 |
MS.gene31937.t1 | AT5G54070 | 50.515 | 97 | 43 | 1 | 32 | 128 | 70 | 161 | 3.39e-27 | 105 |
MS.gene31937.t1 | AT4G18880 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 2.85e-25 | 102 |
MS.gene31937.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 1.80e-24 | 99.0 |
MS.gene31937.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 1.80e-24 | 99.0 |
MS.gene31937.t1 | AT1G67970 | 45.455 | 99 | 48 | 2 | 32 | 129 | 18 | 111 | 8.24e-23 | 94.7 |
MS.gene31937.t1 | AT4G18870 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 4.52e-14 | 69.7 |
MS.gene31937.t1 | AT4G18870 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 1.06e-11 | 63.2 |
Find 40 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAAATATCATCTAAAATA+TGG | 0.168089 | 4.1:-20930930 | MS.gene31937:CDS |
ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4.1:+20930620 | None:intergenic |
TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4.1:+20932026 | None:intergenic |
ACTCTAACCTCTCTTTCTTT+AGG | 0.266225 | 4.1:+20930719 | None:intergenic |
AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4.1:+20932182 | None:intergenic |
TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4.1:-20932159 | MS.gene31937:CDS |
AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4.1:-20930894 | MS.gene31937:CDS |
GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4.1:-20932196 | MS.gene31937:CDS |
CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4.1:-20930902 | MS.gene31937:CDS |
CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4.1:+20932189 | None:intergenic |
TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4.1:+20932164 | None:intergenic |
GAAAATATCATCTAAAATAT+GGG | 0.436004 | 4.1:-20930929 | MS.gene31937:CDS |
ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4.1:-20930627 | MS.gene31937:CDS |
GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4.1:-20930671 | MS.gene31937:CDS |
GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4.1:-20930650 | MS.gene31937:CDS |
GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4.1:+20930823 | None:intergenic |
CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4.1:-20930901 | MS.gene31937:CDS |
ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4.1:-20932156 | MS.gene31937:CDS |
GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4.1:+20932170 | None:intergenic |
GTGAGCTCTGAGAATTCAGC+TGG | 0.504092 | 4.1:+20932053 | None:intergenic |
ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4.1:+20932148 | None:intergenic |
TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4.1:-20932092 | MS.gene31937:CDS |
AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4.1:+20932190 | None:intergenic |
AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4.1:+20930835 | None:intergenic |
TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4.1:-20930755 | MS.gene31937:CDS |
AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4.1:-20930884 | MS.gene31937:CDS |
ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4.1:-20932098 | MS.gene31937:CDS |
ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4.1:-20932149 | MS.gene31937:CDS |
GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4.1:-20932128 | MS.gene31937:CDS |
ACAAGAACCTAAAGAAAGAG+AGG | 0.577303 | 4.1:-20930726 | MS.gene31937:CDS |
AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4.1:-20932251 | MS.gene31937:CDS |
ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4.1:-20932109 | MS.gene31937:CDS |
AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4.1:-20930692 | MS.gene31937:CDS |
TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4.1:-20932264 | None:intergenic |
GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4.1:+20932031 | None:intergenic |
ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4.1:-20930870 | MS.gene31937:CDS |
ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4.1:-20930818 | MS.gene31937:CDS |
TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4.1:-20932140 | MS.gene31937:CDS |
TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4.1:+20932171 | None:intergenic |
CAATCATGAACTACTCATGG+AGG | 0.704767 | 4.1:-20930752 | MS.gene31937:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAAAATATCATCTAAAATA+TGG | - | chr4.1:20931945-20931964 | MS.gene31937:intron | 15.0% |
!!! | ATGACTAATATTTCTTTTTT+AGG | + | chr4.1:20931107-20931126 | None:intergenic | 15.0% |
!!! | GAAAATATCATCTAAAATAT+GGG | - | chr4.1:20931946-20931965 | MS.gene31937:intron | 15.0% |
!! | AAAAGTTCTTTGAATTACTT+GGG | - | chr4.1:20931283-20931302 | MS.gene31937:intron | 20.0% |
!! | ACTAATTAATTACTTCAACA+GGG | - | chr4.1:20931917-20931936 | MS.gene31937:intron | 20.0% |
!! | ATTGTTCTATACTTTCTATT+AGG | + | chr4.1:20931027-20931046 | None:intergenic | 20.0% |
!!! | AAATCTCACTTTATTTTGAA+TGG | - | chr4.1:20930987-20931006 | MS.gene31937:intron | 20.0% |
!!! | ATTGATATATTGATTCATCA+AGG | - | chr4.1:20931183-20931202 | MS.gene31937:intron | 20.0% |
!!! | TAATAGAAAGTATAGAACAA+TGG | - | chr4.1:20931026-20931045 | MS.gene31937:intron | 20.0% |
!!! | TAATATCAACATTCTTTTGA+AGG | + | chr4.1:20931144-20931163 | None:intergenic | 20.0% |
!!! | TTGATATATTGATTCATCAA+GGG | - | chr4.1:20931184-20931203 | MS.gene31937:intron | 20.0% |
! | AAAGTTCTTTGAATTACTTG+GGG | - | chr4.1:20931284-20931303 | MS.gene31937:intron | 25.0% |
! | AGTTAGTGACACAAATTATA+AGG | - | chr4.1:20931605-20931624 | MS.gene31937:intron | 25.0% |
! | ATAGTTAACCTTCATATTAG+TGG | + | chr4.1:20931064-20931083 | None:intergenic | 25.0% |
! | ATGCATATATTAACACAACA+TGG | - | chr4.1:20931844-20931863 | MS.gene31937:intron | 25.0% |
! | CAAAAGTTCTTTGAATTACT+TGG | - | chr4.1:20931282-20931301 | MS.gene31937:intron | 25.0% |
! | CACTAATTAATTACTTCAAC+AGG | - | chr4.1:20931916-20931935 | MS.gene31937:intron | 25.0% |
! | CAGTGAACAAACAAAAAATT+CGG | + | chr4.1:20931238-20931257 | None:intergenic | 25.0% |
! | CTAATTAATTACTTCAACAG+GGG | - | chr4.1:20931918-20931937 | MS.gene31937:intron | 25.0% |
! | TGCTATATTTAACGTTATAC+TGG | - | chr4.1:20931675-20931694 | MS.gene31937:intron | 25.0% |
! | TTGTTGTGCTTGAAATATTT+AGG | + | chr4.1:20930852-20930871 | None:intergenic | 25.0% |
!! | AAAAGACCGAATTTGAAATT+TGG | - | chr4.1:20931426-20931445 | MS.gene31937:intron | 25.0% |
!! | AGTAATTCAAAGAACTTTTG+AGG | + | chr4.1:20931282-20931301 | None:intergenic | 25.0% |
!! | CAATTTTCTTCTGATCAAAA+TGG | - | chr4.1:20930657-20930676 | MS.gene31937:CDS | 25.0% |
!!! | ATAGTCTCCTAACTTTATTT+TGG | + | chr4.1:20932258-20932277 | None:intergenic | 25.0% |
!!! | ATTCTTTTGAAGGAATAAAC+AGG | + | chr4.1:20931134-20931153 | None:intergenic | 25.0% |
AAGTTCTTTGAATTACTTGG+GGG | - | chr4.1:20931285-20931304 | MS.gene31937:intron | 30.0% | |
ATAACCGCCAAAATAAAGTT+AGG | - | chr4.1:20932248-20932267 | MS.gene31937:CDS | 30.0% | |
ATGGCATTAAAATTGTGTCA+TGG | - | chr4.1:20930766-20930785 | MS.gene31937:CDS | 30.0% | |
CAGCATGAGAAATTTCAAAA+GGG | - | chr4.1:20931974-20931993 | MS.gene31937:intron | 30.0% | |
GATGGTCCAAATTTCAAATT+CGG | + | chr4.1:20931435-20931454 | None:intergenic | 30.0% | |
GGAGTAAAAACTCAAAAACT+TGG | + | chr4.1:20931217-20931236 | None:intergenic | 30.0% | |
TCATAGGTCTTCAATAGAAA+TGG | + | chr4.1:20930714-20930733 | None:intergenic | 30.0% | |
TCTATTGAAGACCTATGATT+TGG | - | chr4.1:20930716-20930735 | MS.gene31937:CDS | 30.0% | |
TTAACGTTATACTGGTACTT+GGG | - | chr4.1:20931683-20931702 | MS.gene31937:intron | 30.0% | |
TTTAACGTTATACTGGTACT+TGG | - | chr4.1:20931682-20931701 | MS.gene31937:intron | 30.0% | |
TTTAGAGAGAAAATCGATCA+AGG | + | chr4.1:20930919-20930938 | None:intergenic | 30.0% | |
TTTGTTGAATCGAAATTGGA+TGG | + | chr4.1:20931453-20931472 | None:intergenic | 30.0% | |
! | ATATGTTGGTTGAAATCAGT+AGG | - | chr4.1:20932005-20932024 | MS.gene31937:CDS | 30.0% |
! | GTCATTTGTTGAATCGAAAT+TGG | + | chr4.1:20931457-20931476 | None:intergenic | 30.0% |
!!! | CGAATTTTTTGTTTGTTCAC+TGG | - | chr4.1:20931236-20931255 | MS.gene31937:intron | 30.0% |
AAAGAGCTACTGCAAAGTAA+TGG | + | chr4.1:20931517-20931536 | None:intergenic | 35.0% | |
AACAAATGACTCTAACTGTG+TGG | - | chr4.1:20931467-20931486 | MS.gene31937:intron | 35.0% | |
AATGCAAATAGCTGAATGCA+AGG | - | chr4.1:20932183-20932202 | MS.gene31937:CDS | 35.0% | |
AATTCATGCAGTCAAGACAT+CGG | - | chr4.1:20931337-20931356 | MS.gene31937:intron | 35.0% | |
ACAAGAACCTAAAGAAAGAG+AGG | - | chr4.1:20932149-20932168 | MS.gene31937:CDS | 35.0% | |
ACTCTAACCTCTCTTTCTTT+AGG | + | chr4.1:20932159-20932178 | None:intergenic | 35.0% | |
AGAAATTTCAAAAGGGTTGC+AGG | - | chr4.1:20931981-20932000 | MS.gene31937:intron | 35.0% | |
ATTACTTTGCAGTAGCTCTT+TGG | - | chr4.1:20931516-20931535 | MS.gene31937:intron | 35.0% | |
ATTGTGTCATGGAATGAAGA+AGG | - | chr4.1:20930777-20930796 | MS.gene31937:CDS | 35.0% | |
CCAGCATGAGAAATTTCAAA+AGG | - | chr4.1:20931973-20931992 | MS.gene31937:intron | 35.0% | |
CGTGCACAAAATGAAGAATT+TGG | - | chr4.1:20931579-20931598 | MS.gene31937:intron | 35.0% | |
GAACAAGACTTGAGATATTG+AGG | + | chr4.1:20932055-20932074 | None:intergenic | 35.0% | |
GTGCTTGAAATATTTAGGCA+AGG | + | chr4.1:20930847-20930866 | None:intergenic | 35.0% | |
TAGCAATCATGAACTACTCA+TGG | - | chr4.1:20932120-20932139 | MS.gene31937:CDS | 35.0% | |
TCATGGAATGAAGAAGGAAA+TGG | - | chr4.1:20930783-20930802 | MS.gene31937:CDS | 35.0% | |
TCTTCAATAGAAATGGTGCA+GGG | + | chr4.1:20930707-20930726 | None:intergenic | 35.0% | |
! | AATGTGATGGAGCTAAACTT+TGG | - | chr4.1:20930624-20930643 | MS.gene31937:CDS | 35.0% |
! | AATTCTTCATTTTGTGCACG+TGG | + | chr4.1:20931579-20931598 | None:intergenic | 35.0% |
! | ATTCTTCATTTTGTGCACGT+GGG | + | chr4.1:20931578-20931597 | None:intergenic | 35.0% |
! | ATTGAAGACCTATGATTTGG+TGG | - | chr4.1:20930719-20930738 | MS.gene31937:CDS | 35.0% |
!! | AAAGAACTTTTGAGGAAGCT+AGG | + | chr4.1:20931274-20931293 | None:intergenic | 35.0% |
!! | AAGAACTTTTGAGGAAGCTA+GGG | + | chr4.1:20931273-20931292 | None:intergenic | 35.0% |
!! | ATATCTCAAGTCTTGTTCAG+AGG | - | chr4.1:20932057-20932076 | MS.gene31937:CDS | 35.0% |
!! | CTACTGCAAAGTAATGGATT+TGG | + | chr4.1:20931511-20931530 | None:intergenic | 35.0% |
!! | TGTACGACGATATTGACTTT+GGG | + | chr4.1:20931651-20931670 | None:intergenic | 35.0% |
!!! | AAGGAAATGGTTTTGTTGTG+TGG | - | chr4.1:20930796-20930815 | MS.gene31937:CDS | 35.0% |
!!! | CCTTTTGAAATTTCTCATGC+TGG | + | chr4.1:20931976-20931995 | None:intergenic | 35.0% |
!!! | GTCTCCTAACTTTATTTTGG+CGG | + | chr4.1:20932255-20932274 | None:intergenic | 35.0% |
ACCTTGTTCCACCAAATCAT+AGG | + | chr4.1:20930730-20930749 | None:intergenic | 40.0% | |
AGATATTGAGGAAACACGCT+TGG | + | chr4.1:20932043-20932062 | None:intergenic | 40.0% | |
CAATCATGAACTACTCATGG+AGG | - | chr4.1:20932123-20932142 | MS.gene31937:CDS | 40.0% | |
CCTTCATATTAGTGGCAGAA+AGG | + | chr4.1:20931056-20931075 | None:intergenic | 40.0% | |
CCTTTCTGCCACTAATATGA+AGG | - | chr4.1:20931053-20931072 | MS.gene31937:intron | 40.0% | |
CTTTGAATTACTTGGGGGAT+TGG | - | chr4.1:20931290-20931309 | MS.gene31937:intron | 40.0% | |
GAGAGAAAATCGATCAAGGT+AGG | + | chr4.1:20930915-20930934 | None:intergenic | 40.0% | |
GGCACTTGAAATGAAGTTGT+TGG | - | chr4.1:20932204-20932223 | MS.gene31937:CDS | 40.0% | |
GTCTTCAATAGAAATGGTGC+AGG | + | chr4.1:20930708-20930727 | None:intergenic | 40.0% | |
!! | ACCTATGATTTGGTGGAACA+AGG | - | chr4.1:20930726-20930745 | MS.gene31937:CDS | 40.0% |
!! | AGTAATGGATTTGGATCTGC+TGG | + | chr4.1:20931502-20931521 | None:intergenic | 40.0% |
!! | GTAATGGATTTGGATCTGCT+GGG | + | chr4.1:20931501-20931520 | None:intergenic | 40.0% |
!! | GTGTACGACGATATTGACTT+TGG | + | chr4.1:20931652-20931671 | None:intergenic | 40.0% |
AAAGGGTTGCAGGCATATGT+TGG | - | chr4.1:20931991-20932010 | MS.gene31937:intron | 45.0% | |
GAGTGTCCCTTAAGCCATTA+AGG | - | chr4.1:20930679-20930698 | MS.gene31937:CDS | 45.0% | |
GGTAGTGAAGGTGAAGAAGA+TGG | - | chr4.1:20930747-20930766 | MS.gene31937:CDS | 45.0% | |
GTCTTGACTGCATGAATTCG+TGG | + | chr4.1:20931335-20931354 | None:intergenic | 45.0% | |
TTGGTGGAACAAGGTAGTGA+AGG | - | chr4.1:20930735-20930754 | MS.gene31937:CDS | 45.0% | |
! | AGGGCACCTTAATGGCTTAA+GGG | + | chr4.1:20930688-20930707 | None:intergenic | 45.0% |
! | AATGGTGCAGGGCACCTTAA+TGG | + | chr4.1:20930696-20930715 | None:intergenic | 50.0% |
! | CAGGGCACCTTAATGGCTTA+AGG | + | chr4.1:20930689-20930708 | None:intergenic | 50.0% |
! | CTTCATTTTGTGCACGTGGG+TGG | + | chr4.1:20931575-20931594 | None:intergenic | 50.0% |
! | GGAGTGTCTCTCTCAGCATA+TGG | - | chr4.1:20932225-20932244 | MS.gene31937:CDS | 50.0% |
!! | GTGAGCTCTGAGAATTCAGC+TGG | + | chr4.1:20930825-20930844 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 20930615 | 20932282 | 20930615 | ID=MS.gene31937 |
chr4.1 | mRNA | 20930615 | 20932282 | 20930615 | ID=MS.gene31937.t1;Parent=MS.gene31937 |
chr4.1 | exon | 20931992 | 20932282 | 20931992 | ID=MS.gene31937.t1.exon1;Parent=MS.gene31937.t1 |
chr4.1 | CDS | 20931992 | 20932282 | 20931992 | ID=cds.MS.gene31937.t1;Parent=MS.gene31937.t1 |
chr4.1 | exon | 20930615 | 20930959 | 20930615 | ID=MS.gene31937.t1.exon2;Parent=MS.gene31937.t1 |
chr4.1 | CDS | 20930615 | 20930959 | 20930615 | ID=cds.MS.gene31937.t1;Parent=MS.gene31937.t1 |
Gene Sequence |
Protein sequence |