Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052478.t1 | XP_013457050.1 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 6.20E-81 | 310.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052478.t1 | Q40152 | 58.6 | 99 | 36 | 1 | 31 | 129 | 37 | 130 | 8.8e-28 | 125.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052478.t1 | G7ZZ89 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 4.4e-81 | 310.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene052478.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052478 | MS.gene065145 | 0.805266 | 1.45E-49 | -1.69E-46 |
MS.gene052478 | MS.gene23090 | 0.811077 | 8.39E-51 | -1.69E-46 |
MS.gene052478 | MS.gene27835 | 0.817459 | 3.26E-52 | -1.69E-46 |
MS.gene052478 | MS.gene31937 | 0.818037 | 2.42E-52 | -1.69E-46 |
MS.gene052478 | MS.gene33789 | 0.848614 | 5.48E-60 | -1.69E-46 |
MS.gene052478 | MS.gene54303 | 0.816055 | 6.74E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052478.t1 | MTR_4g088900 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 1.06e-150 | 417 |
MS.gene052478.t1 | MTR_7g091370 | 44.886 | 176 | 76 | 4 | 31 | 199 | 20 | 181 | 2.05e-40 | 138 |
MS.gene052478.t1 | MTR_5g010680 | 38.424 | 203 | 87 | 4 | 30 | 199 | 21 | 218 | 2.22e-40 | 141 |
MS.gene052478.t1 | MTR_1g100777 | 37.073 | 205 | 102 | 4 | 17 | 203 | 4 | 199 | 2.41e-37 | 132 |
MS.gene052478.t1 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 30 | 195 | 3.38e-36 | 130 |
MS.gene052478.t1 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 27 | 192 | 4.48e-36 | 130 |
MS.gene052478.t1 | MTR_5g089170 | 39.106 | 179 | 96 | 3 | 30 | 200 | 22 | 195 | 7.90e-36 | 127 |
MS.gene052478.t1 | MTR_3g101870 | 35.814 | 215 | 89 | 3 | 30 | 200 | 21 | 230 | 5.77e-35 | 127 |
MS.gene052478.t1 | MTR_0020s0020 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 8.74e-35 | 126 |
MS.gene052478.t1 | MTR_6g043060 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 2.26e-34 | 125 |
MS.gene052478.t1 | MTR_1g102860 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 5.52e-34 | 124 |
MS.gene052478.t1 | MTR_5g029680 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 1.93e-33 | 125 |
MS.gene052478.t1 | MTR_5g017470 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 2.16e-33 | 121 |
MS.gene052478.t1 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 31 | 193 | 1.59e-32 | 119 |
MS.gene052478.t1 | MTR_1g061170 | 41.935 | 155 | 79 | 4 | 27 | 175 | 38 | 187 | 1.96e-32 | 122 |
MS.gene052478.t1 | MTR_7g095680 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 4.78e-32 | 119 |
MS.gene052478.t1 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 139 | 301 | 6.64e-32 | 120 |
MS.gene052478.t1 | MTR_2g100680 | 47.863 | 117 | 50 | 2 | 13 | 129 | 17 | 122 | 9.40e-32 | 120 |
MS.gene052478.t1 | MTR_4g077970 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 3.33e-31 | 119 |
MS.gene052478.t1 | MTR_8g083100 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 7.15e-31 | 118 |
MS.gene052478.t1 | MTR_3g104550 | 38.953 | 172 | 94 | 4 | 31 | 199 | 44 | 207 | 3.62e-30 | 114 |
MS.gene052478.t1 | MTR_8g087540 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 5.39e-30 | 114 |
MS.gene052478.t1 | MTR_2g017890 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 1.38e-27 | 107 |
MS.gene052478.t1 | MTR_6g086805 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 1.84e-27 | 107 |
MS.gene052478.t1 | MTR_8g105780 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 1.29e-26 | 105 |
MS.gene052478.t1 | MTR_4g045757 | 50.704 | 71 | 29 | 2 | 33 | 102 | 14 | 79 | 5.00e-14 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052478.t1 | AT5G62020 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 3.42e-37 | 131 |
MS.gene052478.t1 | AT4G36990 | 39.000 | 200 | 89 | 5 | 30 | 207 | 11 | 199 | 4.47e-36 | 128 |
MS.gene052478.t1 | AT2G41690 | 38.462 | 195 | 99 | 4 | 21 | 199 | 28 | 217 | 1.64e-35 | 125 |
MS.gene052478.t1 | AT4G17750 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 8.40e-35 | 129 |
MS.gene052478.t1 | AT1G46264 | 54.455 | 101 | 41 | 1 | 30 | 130 | 31 | 126 | 2.69e-34 | 125 |
MS.gene052478.t1 | AT4G11660 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 1.60e-33 | 123 |
MS.gene052478.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.02e-33 | 122 |
MS.gene052478.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.02e-33 | 122 |
MS.gene052478.t1 | AT5G43840 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 7.40e-33 | 119 |
MS.gene052478.t1 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 7.63e-33 | 123 |
MS.gene052478.t1 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.11e-33 | 123 |
MS.gene052478.t1 | AT4G13980 | 37.989 | 179 | 88 | 3 | 34 | 209 | 24 | 182 | 1.32e-32 | 122 |
MS.gene052478.t1 | AT3G22830 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.54e-32 | 121 |
MS.gene052478.t1 | AT3G63350 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 6.30e-32 | 117 |
MS.gene052478.t1 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 7.06e-32 | 120 |
MS.gene052478.t1 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 7.06e-32 | 120 |
MS.gene052478.t1 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 1.99e-31 | 117 |
MS.gene052478.t1 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 1.99e-31 | 117 |
MS.gene052478.t1 | AT3G51910 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.37e-30 | 113 |
MS.gene052478.t1 | AT3G02990 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 6.65e-29 | 112 |
MS.gene052478.t1 | AT3G24520 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.22e-28 | 109 |
MS.gene052478.t1 | AT5G54070 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 1.73e-28 | 109 |
MS.gene052478.t1 | AT4G18880 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 9.63e-26 | 103 |
MS.gene052478.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 4.85e-25 | 100 |
MS.gene052478.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 4.85e-25 | 100 |
MS.gene052478.t1 | AT1G67970 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 3.79e-24 | 98.6 |
MS.gene052478.t1 | AT4G18870 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 8.44e-15 | 71.6 |
MS.gene052478.t1 | AT4G18870 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 1.88e-12 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4.3:+24188065 | None:intergenic |
ACTCTAACCTCTCCTTCTTT+AGG | 0.266225 | 4.3:+24186757 | None:intergenic |
ATTGTCTCCTAACTTTATTT+TGG | 0.297142 | 4.3:+24186658 | None:intergenic |
AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4.3:+24188221 | None:intergenic |
TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4.3:-24188198 | MS.gene052478:CDS |
AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4.3:-24186932 | MS.gene052478:CDS |
GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4.3:-24188235 | MS.gene052478:CDS |
CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4.3:-24186940 | MS.gene052478:CDS |
CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4.3:+24188228 | None:intergenic |
AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4.3:-24186968 | MS.gene052478:CDS |
TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4.3:+24188203 | None:intergenic |
ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4.3:-24186665 | MS.gene052478:CDS |
GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4.3:-24186709 | MS.gene052478:CDS |
GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4.3:-24186688 | MS.gene052478:CDS |
GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4.3:+24186861 | None:intergenic |
CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4.3:-24186939 | MS.gene052478:CDS |
ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4.3:-24188195 | MS.gene052478:CDS |
GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4.3:+24188209 | None:intergenic |
GTGAGCTCTGAGAATTCAGC+TGG | 0.504092 | 4.3:+24188092 | None:intergenic |
ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4.3:+24188187 | None:intergenic |
GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4.3:-24186967 | MS.gene052478:CDS |
TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4.3:-24188131 | MS.gene052478:CDS |
AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4.3:+24188229 | None:intergenic |
AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4.3:+24186873 | None:intergenic |
TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4.3:-24186793 | MS.gene052478:CDS |
AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4.3:-24186922 | MS.gene052478:CDS |
ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4.3:-24188137 | MS.gene052478:CDS |
GGAGAACAAGAACCTAAAGA+AGG | 0.564741 | 4.3:-24186769 | MS.gene052478:CDS |
ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4.3:-24188188 | MS.gene052478:CDS |
GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4.3:-24188167 | MS.gene052478:CDS |
AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4.3:-24188290 | MS.gene052478:CDS |
ACAAGAACCTAAAGAAGGAG+AGG | 0.585621 | 4.3:-24186764 | MS.gene052478:CDS |
ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4.3:-24188148 | MS.gene052478:CDS |
AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4.3:-24186730 | MS.gene052478:CDS |
TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4.3:-24188303 | None:intergenic |
GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4.3:+24188070 | None:intergenic |
ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4.3:-24186908 | MS.gene052478:CDS |
ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4.3:-24186856 | MS.gene052478:CDS |
TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4.3:-24188179 | MS.gene052478:CDS |
TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4.3:+24188210 | None:intergenic |
CAATCATGAACTACTCATGG+AGG | 0.704767 | 4.3:-24186790 | MS.gene052478:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGACTAATATTTCTTTTTT+AGG | + | chr4.3:24187145-24187164 | None:intergenic | 15.0% |
!! | ACTAATTAATTACTTCAACA+GGG | - | chr4.3:24187956-24187975 | MS.gene052478:intron | 20.0% |
!! | AGAAAATATCATCTAAAAGA+TGG | - | chr4.3:24187984-24188003 | MS.gene052478:intron | 20.0% |
!! | ATTGTTCTATACTTTCTATT+AGG | + | chr4.3:24187065-24187084 | None:intergenic | 20.0% |
!! | GAAAATATCATCTAAAAGAT+GGG | - | chr4.3:24187985-24188004 | MS.gene052478:intron | 20.0% |
!!! | AAATCTCACTTTATTTTGAA+TGG | - | chr4.3:24187025-24187044 | MS.gene052478:intron | 20.0% |
!!! | ATTGATATATTGATTCATCA+AGG | - | chr4.3:24187221-24187240 | MS.gene052478:intron | 20.0% |
!!! | TAATATCAACATTCTTTTGA+AGG | + | chr4.3:24187182-24187201 | None:intergenic | 20.0% |
!!! | TTGATATATTGATTCATCAA+GGG | - | chr4.3:24187222-24187241 | MS.gene052478:intron | 20.0% |
! | AGTTAGTGACACAAATTATA+AGG | - | chr4.3:24187643-24187662 | MS.gene052478:intron | 25.0% |
! | ATAGTTAACCTTCATATTAG+TGG | + | chr4.3:24187102-24187121 | None:intergenic | 25.0% |
! | ATGCATATATTAACACAACA+TGG | - | chr4.3:24187882-24187901 | MS.gene052478:intron | 25.0% |
! | CACTAATTAATTACTTCAAC+AGG | - | chr4.3:24187955-24187974 | MS.gene052478:intron | 25.0% |
! | CAGTGAACAAACAAAAAATT+CGG | + | chr4.3:24187276-24187295 | None:intergenic | 25.0% |
! | CTAATTAATTACTTCAACAG+GGG | - | chr4.3:24187957-24187976 | MS.gene052478:intron | 25.0% |
! | TGCTATATTTAACGTTATAC+TGG | - | chr4.3:24187713-24187732 | MS.gene052478:intron | 25.0% |
! | TTGTTGTGCTTGAAATATTT+AGG | + | chr4.3:24186890-24186909 | None:intergenic | 25.0% |
!! | AAAAGACCGAATTTGAAATT+TGG | - | chr4.3:24187464-24187483 | MS.gene052478:intron | 25.0% |
!! | CAATTTTCTTCTGATCAAAA+TGG | - | chr4.3:24186695-24186714 | MS.gene052478:CDS | 25.0% |
!!! | ATTCTTTTGAAGGAATAAAC+AGG | + | chr4.3:24187172-24187191 | None:intergenic | 25.0% |
!!! | ATTGTCTCCTAACTTTATTT+TGG | + | chr4.3:24188297-24188316 | None:intergenic | 25.0% |
AAAAGTTCTTTGAATTACCC+GGG | - | chr4.3:24187321-24187340 | MS.gene052478:intron | 30.0% | |
ATAACCGCCAAAATAAAGTT+AGG | - | chr4.3:24188287-24188306 | MS.gene052478:CDS | 30.0% | |
ATGGCATTAAAATTGTGTCA+TGG | - | chr4.3:24186804-24186823 | MS.gene052478:CDS | 30.0% | |
CAAAAGTTCTTTGAATTACC+CGG | - | chr4.3:24187320-24187339 | MS.gene052478:intron | 30.0% | |
CAGCATGAGAAATTTCAAAA+GGG | - | chr4.3:24188013-24188032 | MS.gene052478:intron | 30.0% | |
GATGGTCCAAATTTCAAATT+CGG | + | chr4.3:24187473-24187492 | None:intergenic | 30.0% | |
GGAGTAAAAACTCAAAAACT+TGG | + | chr4.3:24187255-24187274 | None:intergenic | 30.0% | |
TCATAGGTCTTCAATAGAAA+TGG | + | chr4.3:24186752-24186771 | None:intergenic | 30.0% | |
TCTATTGAAGACCTATGATT+TGG | - | chr4.3:24186754-24186773 | MS.gene052478:CDS | 30.0% | |
TTAACGTTATACTGGTACTT+GGG | - | chr4.3:24187721-24187740 | MS.gene052478:intron | 30.0% | |
TTTAACGTTATACTGGTACT+TGG | - | chr4.3:24187720-24187739 | MS.gene052478:intron | 30.0% | |
TTTAGAGAGAAAATCGATCA+AGG | + | chr4.3:24186957-24186976 | None:intergenic | 30.0% | |
TTTGTTGAATCGAAATTGGA+TGG | + | chr4.3:24187491-24187510 | None:intergenic | 30.0% | |
! | ATATGTTGGTTGAAATCAGT+AGG | - | chr4.3:24188044-24188063 | MS.gene052478:CDS | 30.0% |
! | GGTAATTCAAAGAACTTTTG+AGG | + | chr4.3:24187320-24187339 | None:intergenic | 30.0% |
! | GTCATTTGTTGAATCGAAAT+TGG | + | chr4.3:24187495-24187514 | None:intergenic | 30.0% |
!!! | CGAATTTTTTGTTTGTTCAC+TGG | - | chr4.3:24187274-24187293 | MS.gene052478:intron | 30.0% |
AAAGAGCTACTGCAAAGTAA+TGG | + | chr4.3:24187555-24187574 | None:intergenic | 35.0% | |
AAAGTTCTTTGAATTACCCG+GGG | - | chr4.3:24187322-24187341 | MS.gene052478:intron | 35.0% | |
AACAAATGACTCTAACTGTG+TGG | - | chr4.3:24187505-24187524 | MS.gene052478:intron | 35.0% | |
AATGCAAATAGCTGAATGCA+AGG | - | chr4.3:24188222-24188241 | MS.gene052478:CDS | 35.0% | |
AATTCATGCAGTCAAGACAT+CGG | - | chr4.3:24187375-24187394 | MS.gene052478:intron | 35.0% | |
AGAAATTTCAAAAGGGTTGC+AGG | - | chr4.3:24188020-24188039 | MS.gene052478:intron | 35.0% | |
ATTACTTTGCAGTAGCTCTT+TGG | - | chr4.3:24187554-24187573 | MS.gene052478:intron | 35.0% | |
ATTGTGTCATGGAATGAAGA+AGG | - | chr4.3:24186815-24186834 | MS.gene052478:CDS | 35.0% | |
CCAGCATGAGAAATTTCAAA+AGG | - | chr4.3:24188012-24188031 | MS.gene052478:intron | 35.0% | |
CGTGCACAAAATGAAGAATT+TGG | - | chr4.3:24187617-24187636 | MS.gene052478:intron | 35.0% | |
GAACAAGACTTGAGATATTG+AGG | + | chr4.3:24188094-24188113 | None:intergenic | 35.0% | |
GTGCTTGAAATATTTAGGCA+AGG | + | chr4.3:24186885-24186904 | None:intergenic | 35.0% | |
TAGCAATCATGAACTACTCA+TGG | - | chr4.3:24188159-24188178 | MS.gene052478:CDS | 35.0% | |
TCATGGAATGAAGAAGGAAA+TGG | - | chr4.3:24186821-24186840 | MS.gene052478:CDS | 35.0% | |
TCTTCAATAGAAATGGTGCA+GGG | + | chr4.3:24186745-24186764 | None:intergenic | 35.0% | |
! | AATGTGATGGAGCTAAACTT+TGG | - | chr4.3:24186662-24186681 | MS.gene052478:CDS | 35.0% |
! | AATTCTTCATTTTGTGCACG+TGG | + | chr4.3:24187617-24187636 | None:intergenic | 35.0% |
! | ATTCTTCATTTTGTGCACGT+GGG | + | chr4.3:24187616-24187635 | None:intergenic | 35.0% |
! | ATTGAAGACCTATGATTTGG+TGG | - | chr4.3:24186757-24186776 | MS.gene052478:CDS | 35.0% |
!! | AAAGAACTTTTGAGGAAGCT+AGG | + | chr4.3:24187312-24187331 | None:intergenic | 35.0% |
!! | AAGAACTTTTGAGGAAGCTA+GGG | + | chr4.3:24187311-24187330 | None:intergenic | 35.0% |
!! | ATATCTCAAGTCTTGTTCAG+AGG | - | chr4.3:24188096-24188115 | MS.gene052478:CDS | 35.0% |
!! | CTACTGCAAAGTAATGGATT+TGG | + | chr4.3:24187549-24187568 | None:intergenic | 35.0% |
!! | TGTACGACGATATTGACTTT+GGG | + | chr4.3:24187689-24187708 | None:intergenic | 35.0% |
!!! | AAGGAAATGGTTTTGTTGTG+TGG | - | chr4.3:24186834-24186853 | MS.gene052478:CDS | 35.0% |
!!! | CCTTTTGAAATTTCTCATGC+TGG | + | chr4.3:24188015-24188034 | None:intergenic | 35.0% |
!!! | GTCTCCTAACTTTATTTTGG+CGG | + | chr4.3:24188294-24188313 | None:intergenic | 35.0% |
AAGTTCTTTGAATTACCCGG+GGG | - | chr4.3:24187323-24187342 | MS.gene052478:intron | 40.0% | |
ACAAGAACCTAAAGAAGGAG+AGG | - | chr4.3:24188188-24188207 | MS.gene052478:CDS | 40.0% | |
ACCTTGTTCCACCAAATCAT+AGG | + | chr4.3:24186768-24186787 | None:intergenic | 40.0% | |
ACTCTAACCTCTCCTTCTTT+AGG | + | chr4.3:24188198-24188217 | None:intergenic | 40.0% | |
AGATATTGAGGAAACACGCT+TGG | + | chr4.3:24188082-24188101 | None:intergenic | 40.0% | |
CAATCATGAACTACTCATGG+AGG | - | chr4.3:24188162-24188181 | MS.gene052478:CDS | 40.0% | |
CCTTCATATTAGTGGCAGAA+AGG | + | chr4.3:24187094-24187113 | None:intergenic | 40.0% | |
CCTTTCTGCCACTAATATGA+AGG | - | chr4.3:24187091-24187110 | MS.gene052478:intron | 40.0% | |
CTAGAGAAAATTCAATCCCC+CGG | + | chr4.3:24187342-24187361 | None:intergenic | 40.0% | |
GAGAGAAAATCGATCAAGGT+AGG | + | chr4.3:24186953-24186972 | None:intergenic | 40.0% | |
GGAGAACAAGAACCTAAAGA+AGG | - | chr4.3:24188183-24188202 | MS.gene052478:CDS | 40.0% | |
GGCACTTGAAATGAAGTTGT+TGG | - | chr4.3:24188243-24188262 | MS.gene052478:CDS | 40.0% | |
GTCTTCAATAGAAATGGTGC+AGG | + | chr4.3:24186746-24186765 | None:intergenic | 40.0% | |
TAGAGAAAATTCAATCCCCC+GGG | + | chr4.3:24187341-24187360 | None:intergenic | 40.0% | |
!! | ACCTATGATTTGGTGGAACA+AGG | - | chr4.3:24186764-24186783 | MS.gene052478:CDS | 40.0% |
!! | AGTAATGGATTTGGATCTGC+TGG | + | chr4.3:24187540-24187559 | None:intergenic | 40.0% |
!! | GTAATGGATTTGGATCTGCT+GGG | + | chr4.3:24187539-24187558 | None:intergenic | 40.0% |
!! | GTGTACGACGATATTGACTT+TGG | + | chr4.3:24187690-24187709 | None:intergenic | 40.0% |
AAAGGGTTGCAGGCATATGT+TGG | - | chr4.3:24188030-24188049 | MS.gene052478:intron | 45.0% | |
GAGTGTCCCTTAAGCCATTA+AGG | - | chr4.3:24186717-24186736 | MS.gene052478:CDS | 45.0% | |
GGTAGTGAAGGTGAAGAAGA+TGG | - | chr4.3:24186785-24186804 | MS.gene052478:CDS | 45.0% | |
GTCTTGACTGCATGAATTCG+TGG | + | chr4.3:24187373-24187392 | None:intergenic | 45.0% | |
TTGGTGGAACAAGGTAGTGA+AGG | - | chr4.3:24186773-24186792 | MS.gene052478:CDS | 45.0% | |
! | AGGGCACCTTAATGGCTTAA+GGG | + | chr4.3:24186726-24186745 | None:intergenic | 45.0% |
! | AATGGTGCAGGGCACCTTAA+TGG | + | chr4.3:24186734-24186753 | None:intergenic | 50.0% |
! | CAGGGCACCTTAATGGCTTA+AGG | + | chr4.3:24186727-24186746 | None:intergenic | 50.0% |
! | CTTCATTTTGTGCACGTGGG+TGG | + | chr4.3:24187613-24187632 | None:intergenic | 50.0% |
! | GGAGTGTCTCTCTCAGCATA+TGG | - | chr4.3:24188264-24188283 | MS.gene052478:CDS | 50.0% |
!! | GTGAGCTCTGAGAATTCAGC+TGG | + | chr4.3:24186863-24186882 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 24186653 | 24188321 | 24186653 | ID=MS.gene052478 |
chr4.3 | mRNA | 24186653 | 24188321 | 24186653 | ID=MS.gene052478.t1;Parent=MS.gene052478 |
chr4.3 | exon | 24188031 | 24188321 | 24188031 | ID=MS.gene052478.t1.exon1;Parent=MS.gene052478.t1 |
chr4.3 | CDS | 24188031 | 24188321 | 24188031 | ID=cds.MS.gene052478.t1;Parent=MS.gene052478.t1 |
chr4.3 | exon | 24186653 | 24186997 | 24186653 | ID=MS.gene052478.t1.exon2;Parent=MS.gene052478.t1 |
chr4.3 | CDS | 24186653 | 24186997 | 24186653 | ID=cds.MS.gene052478.t1;Parent=MS.gene052478.t1 |
Gene Sequence |
Protein sequence |