AlfalfaGEDB | MS.gene32078

M. sativa cultivar XinJiangDaYe / MS.gene32078

KEGG: K22519
GO: -
PFAM: PF01471.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32078.t1	XP_003590698.1	84.8	396	55	2	1	395	1	392	3.80E-132	481.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32078.t1	A1A6M1	52.0	256	116	4	117	370	112	362	3.0e-61	237.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32078.t1	G7I2L5	84.8	396	55	2	1	395	1	392	2.7e-132	481.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053907	MS.gene32078	0.828893	6.98E-55	-1.69E-46
MS.gene053971	MS.gene32078	0.816802	4.58E-52	-1.69E-46
MS.gene058746	MS.gene32078	0.809332	1.99E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32078.t1	MTR_1g072690	89.141	396	38	2	1	395	1	392	0.0	667

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32078.t1	AT4G13670	53.807	394	168	9	3	392	1	384	2.44e-133	387
MS.gene32078.t1	AT4G13670	50.284	352	161	9	3	350	1	342	5.14e-100	301
MS.gene32078.t1	AT4G13670	53.358	268	117	6	3	267	1	263	6.09e-76	237
MS.gene32078.t1	AT4G13670	53.358	268	117	6	3	267	1	263	6.09e-76	237

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Find 109 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGATGAAGTGGAAG+TGG	0.443894	1.2:-55520059	MS.gene32078:CDS
AACAGGTTCTGAAGGAGAGG+AGG	0.634473	1.2:-55519948	MS.gene32078:CDS
AAGAATTTGGTTCTTGAGAG+TGG	0.516277	1.2:-55520115	MS.gene32078:CDS
AAGATAGAATTCGGTGCTCG+AGG	0.544211	1.2:+55520209	None:intergenic
AAGGAGGAAAACTCTTGGAT+GGG	0.591075	1.2:+55518534	None:intergenic
AAGGGAATTGAATTTATAGG+AGG	0.518169	1.2:+55520396	None:intergenic
AAGGTGATGAAGATAGAATT+CGG	0.485136	1.2:+55520200	None:intergenic
AATCACAAGTTATATGCCCT+AGG	0.642779	1.2:+55517561	None:intergenic
AATGGAGCAGTGAGAGATAA+GGG	0.477503	1.2:+55520378	None:intergenic
AATTTATAGGAGGGAAAGTT+AGG	0.352656	1.2:+55520406	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAACAACCTAGATGAA+AGG	+	chr1.2:55519749-55519768	None:intergenic	30.0%
AACTAAAAGTGAAAACAACG+GGG	+	chr1.2:55519662-55519681	None:intergenic	30.0%
AAGGGAATTGAATTTATAGG+AGG	+	chr1.2:55517641-55517660	None:intergenic	30.0%
AAGGTGATGAAGATAGAATT+CGG	+	chr1.2:55517837-55517856	None:intergenic	30.0%
AATGGCTATTGTGTGAATTT+GGG	-	chr1.2:55520009-55520028	MS.gene32078:CDS	30.0%
AATTTATAGGAGGGAAAGTT+AGG	+	chr1.2:55517631-55517650	None:intergenic	30.0%
ACATTCTGCAATCAAAGAAA+CGG	+	chr1.2:55520276-55520295	None:intergenic	30.0%
AGAATCTGTTGAACAAGTAA+AGG	-	chr1.2:55518008-55518027	MS.gene32078:intron	30.0%
AGGGAATTGAATTTATAGGA+GGG	+	chr1.2:55517640-55517659	None:intergenic	30.0%
AGTTCAGTTTGATGTGATAA+TGG	-	chr1.2:55519991-55520010	MS.gene32078:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	55517535	55520521	55517535	ID=MS.gene32078
chr1.2	mRNA	55517535	55520521	55517535	ID=MS.gene32078.t1;Parent=MS.gene32078
chr1.2	exon	55519934	55520521	55519934	ID=MS.gene32078.t1.exon1;Parent=MS.gene32078.t1
chr1.2	CDS	55519934	55520521	55519934	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1
chr1.2	exon	55519723	55519818	55519723	ID=MS.gene32078.t1.exon2;Parent=MS.gene32078.t1
chr1.2	CDS	55519723	55519818	55519723	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1
chr1.2	exon	55519264	55519392	55519264	ID=MS.gene32078.t1.exon3;Parent=MS.gene32078.t1
chr1.2	CDS	55519264	55519392	55519264	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1
chr1.2	exon	55518410	55518650	55518410	ID=MS.gene32078.t1.exon4;Parent=MS.gene32078.t1
chr1.2	CDS	55518410	55518650	55518410	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1
chr1.2	exon	55517728	55517765	55517728	ID=MS.gene32078.t1.exon5;Parent=MS.gene32078.t1
chr1.2	CDS	55517728	55517765	55517728	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1
chr1.2	exon	55517535	55517630	55517535	ID=MS.gene32078.t1.exon6;Parent=MS.gene32078.t1
chr1.2	CDS	55517535	55517630	55517535	ID=cds.MS.gene32078.t1;Parent=MS.gene32078.t1

Gene Sequence

>MS.gene32078

ATGTCTCTCTCTACACCTACTATTCCCATAACCGTCACTGTAAGTGTGAATTCCACACTCTCTTTCCCCACTAAAACCCTCCCATTTCTCAAACCTAACTTTCCCTCCTATAAATTCAATTCCCTTATCTCTCACTGCTCCATTCCCGATCGTGAAGAACACCGCTGGCTCCGCGAAGAACAACGATGGCTCCGTGAGGAGCAACGGTGGATTCGCGAGGAGAATCGTTGGAATCGTGAACGTGATGAGCTTCTCCGAGAGATTTCTGAACTTAAACTTCAAATTCAATCCCTCGAGCACCGAATTCTATCTTCATCACCTTCTTCTTCTACATCTTCCGATGCGGTTTCGAATGTTGCGGCGTTGTTACAGGTGTTGAAGGATAAGAATTTGGTTCTTGAGAGTGGTTCTAGTCAGAGGAGGTTGGTGCTTGAGGAGGAAAAGGAAGATGAAGTGGAAGTGGAAGAAGAGAAAGAATCTGTTGAACAAGTAAAGGAGATTGTGGTTGTTGAAAAACCTGCTGTTACGGTAGAAAAGAGGACCGTTTTGCGAACAGGTTCTGAAGGAGAGGAGGTTCAAAAGTTGCAGGTTCGATTTATTCTGAAGGATACACTATTTTCATGAATTACATTTATGATGTTGTAGTAGTTGATACATTACAATTCGTGAACTCTTATTTTTGTGATGAATTGTGTTACAATAGGAAGCATTGCTAAAATTGGGATTTTACTCGGGTGAGGAGGACATGGAATTCTCTAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGTTAGTAGTCTTTGTTTTCAATACTACTACTGTTTTGATGTGAATCGTGAAGAGAATAATAATCATCTTGATTTTATTTTTGTTACAAACTGATTATTTTACTGTATGTTTGGATTGGCGGTGATTTCAGCAAATTCATGGTGGCACCGTCATTTTGTGAAGCTCTAATGTGTAGCTTTTGCAAAACCACGGTGATTTACTGTGATTCTGCCAATGTCATCATCAATCCAAACACGCACTCGGTACTATTATTGTGTTTTGTATATGCTATGCTATTTTTGGAGTTTTTAAATGTCATGATTTTGATGGGTATGTTATATTGTTTAACAGTCTTCATTGGGTATCCCTGAGGATGGGATCATGACATCTAAACTTCTTGAGAGGCTGTATTTGGATATAAGGACTACGGATGTAGATAGTGTAAATGAAACCAAAAAATCTGCTACTGTTTTACCGAAGGTATGTTTGTTATATAAGTTGTACTTTTTGCTCTTGAGTACGGAGAACATGCAACCATATTTTTGTAGTTACTCTTAAATATGTCGTCTAAAAAACAGTAGTAGTATTAATCCCATGCTATGTAGCAACAACACTTTACATTGAATACATGTTTGGTGTCTGACACATGTTAGTGTCCATCACCTACACAACACCAGCACATGTGGTCACATTGAATCACTTATATTTTCTTAAATTGTTATTAGTATCTACACGTTGGTATCGTGTCGAGGTCCATGTCTCTGTCAGTGTTTCATAGATGATAGATGCCATGTCTCTAAGGGACTGGTCAATGATTGGTCTTGATGGAAATCTGAACAAGGAACACAAAATATATGCAAGACCTCAACATATGAAAAAAAAAAATCTTTTAAATTTTTTAGAACATAAATTTTAATTTTTTATAGAGCACAAATTTGTTTTCATTATTTGACAGTTATCAAGGACCCGCTCTCCTAAAAGTTTAAGCTTTTAGGTGCAAGCCTGGGAGTAGTAGATTTTGTAGTTCTAAACCAATGAAGAGACAAGATATGAACCATTTGTATTTGATTCTTTATCAATCTGTGAGTTCTAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCTGTGACAGAAATTTCAGAGGTTCAGCAAAAAGTCGTGGGAGAAGTTGACCAAGAAACAGAAGCATCCCATCCAAGAGTTTTCCTCCTTGGGGAAAATCGGTGGGAAGAACCATCAAGACTTTCGACGAAGGTTAGAGTTGATAGGGGCAAGAACAAGGACGGAACAATGAAATGCCTTCAATGTTCTGGGCAAGGTATCTTGTTGTGTACAGGTATGTAATTGTCCCCGTTGTTTTCACTTTTAGTTCAATATATAAGCCCCAGTAAGGAAATCAATTCTTGAAAAGTGAAATGTATTTTTTGAGAGTATACCTTTCATCTAGGTTGTTTTGTTCCTCCAACTGGAGCTTCTCATACTCTTAATTTTTGTGAAGTTTGTTTATTTTTCCTCACAATGTCATCTTGTTGACAAGGCCTCTCCTAATCCCAATTCATCCGAGTAATTTGAATACCTCGAGAAAAAAACCATGTGAACGTAGGTCAATCCACTCAAATTGGCTTAACTAGAGATTTGATTTGTAGACCATTAGAAAATCAACAGTGTGATAATGGTTAGAGTTCAGTTTGATGTGATAATGGCTATTGTGTGAATTTGGGAATCAGAATCATGATAGTAGTATTCATAACAGCAGGCATGGCCCAATGACTCCAATGAAGCAGCAAGCGTTAAGATGGTTTATCCTCACATTTAGGTCTTCATAAATAATGACCATTACATGGAAAATCATAAAGGCAGATTCTGAGAGCTCAGCATCTTTATTATACTGATCTCCTAAATATATTATGCATGATATCAACTTTGGAAATCTTCCATATATCTCAAGTCTCAAGTCAACTTCCGTTTCTTTGATTGCAGAATGTGATGGATCTGGTGAGCCAAATATTGAACCTCAAGTAAGGGATAATTGTGCTTTTTATGAAAATTAACTTTCATAGTTACTCTTTTGTGTTGCATAAGCTTTTGAGTTTACAAATGAGATCTGTGATACAGTTTATGGAATGGGTGGGTGAGGATACAAAATGCCCATATTGTGAAGGCCTAGGGCATATAACTTGTGATTTGTGTCGAGGGAAAACGATGGTGTAG

Protein sequence

>MS.gene32078.t1

MSLSTPTIPITVTVSVNSTLSFPTKTLPFLKPNFPSYKFNSLISHCSIPDREEHRWLREEQRWLREEQRWIREENRWNRERDELLREISELKLQIQSLEHRILSSSPSSSTSSDAVSNVAALLQVLKDKNLVLESGSSQRRLVLEEEKEDEVEVEEEKESVEQVKEIVVVEKPAVTVEKRTVLRTGSEGEEVQKLQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQSSLGIPEDGIMTSKLLERLYLDIRTTDVDSVNETKKSATVLPKEVENGAAVASVTEISEVQQKVVGEVDQETEASHPRVFLLGENRWEEPSRLSTKVRVDRGKNKDGTMKCLQCSGQGILLCTECDGSGEPNIEPQFMEWVGEDTKCPYCEGLGHITCDLCRGKTMV