AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053971


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053971.t1 MTR_1g017380 69.043 533 162 1 1 533 46 575 0.0 757
MS.gene053971.t1 MTR_1g017390 69.043 533 162 1 1 533 46 575 0.0 756
MS.gene053971.t1 MTR_4g057970 45.772 544 285 5 2 544 49 583 6.14e-167 487
MS.gene053971.t1 MTR_1g090140 44.129 528 287 3 17 543 47 567 1.04e-153 452
MS.gene053971.t1 MTR_1g090130 44.618 511 280 2 17 526 47 555 1.06e-151 447
MS.gene053971.t1 MTR_4g084130 44.423 520 282 6 17 533 54 569 7.96e-150 443
MS.gene053971.t1 MTR_8g017080 40.809 544 312 5 1 540 34 571 5.75e-139 415
MS.gene053971.t1 MTR_4g084130 44.858 457 246 5 80 533 4 457 1.43e-130 389
MS.gene053971.t1 MTR_0991s0010 72.143 140 39 0 1 140 46 185 3.31e-62 203
MS.gene053971.t1 MTR_5g087560 21.682 535 342 17 24 524 35 526 1.14e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053971.t1 AT1G26230 71.986 564 144 2 2 551 40 603 0.0 828
MS.gene053971.t1 AT1G26230 72.395 547 137 2 19 551 5 551 0.0 804
MS.gene053971.t1 AT1G26230 72.376 543 136 2 23 551 1 543 0.0 799
MS.gene053971.t1 AT1G55490 67.161 539 176 1 2 540 56 593 0.0 744
MS.gene053971.t1 AT1G55490 67.161 539 176 1 2 540 56 593 0.0 744
MS.gene053971.t1 AT1G55490 67.161 539 176 1 2 540 56 593 0.0 744
MS.gene053971.t1 AT1G55490 67.161 539 176 1 2 540 56 593 0.0 744
MS.gene053971.t1 AT1G55490 67.161 539 176 1 2 540 56 593 0.0 744
MS.gene053971.t1 AT3G13470 67.347 539 175 1 2 540 52 589 0.0 743
MS.gene053971.t1 AT1G26230 76.596 470 110 0 2 471 40 509 0.0 741
MS.gene053971.t1 AT5G56500 66.419 539 181 0 2 540 52 590 0.0 730
MS.gene053971.t1 AT5G56500 66.419 539 181 0 2 540 52 590 0.0 730
MS.gene053971.t1 AT1G26230 76.923 403 93 0 2 404 40 442 0.0 639
MS.gene053971.t1 AT2G28000 46.095 525 278 4 3 526 49 569 1.58e-164 481
MS.gene053971.t1 AT3G23990 43.640 511 285 2 17 526 46 554 2.42e-148 439
MS.gene053971.t1 AT2G33210 42.966 526 295 3 2 526 34 555 6.59e-147 436
MS.gene053971.t1 AT2G33210 42.776 526 291 4 2 526 34 550 1.20e-143 427
MS.gene053971.t1 AT3G13860 41.495 535 304 4 2 533 33 561 6.05e-143 425
MS.gene053971.t1 AT5G18820 41.133 547 309 6 2 546 35 570 1.98e-131 395
MS.gene053971.t1 AT5G18820 41.239 468 265 4 81 546 5 464 1.10e-110 338
MS.gene053971.t1 AT5G18820 40.945 381 221 3 2 381 35 412 4.55e-87 276
MS.gene053971.t1 AT3G11830 25.000 496 287 20 24 484 35 480 6.75e-13 71.6
MS.gene053971.t1 AT3G11830 24.848 495 287 20 24 484 35 478 2.56e-12 70.1

Find 115 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTACCTTGGTTGCATTTA+AGG 0.133783 5.2:+42664096 None:intergenic
GCTATTAAGGCTCCTGCTTT+TGG 0.153958 5.2:-42665523 MS.gene053971:CDS
GCAGATGATAACATGAATTT+TGG 0.174735 5.2:-42663374 MS.gene053971:CDS
CCCTCTGCAACTATCAAAAT+TGG 0.234800 5.2:+42665610 None:intergenic
GAAAGGATAGCAAGATTATC+AGG 0.265173 5.2:-42664307 MS.gene053971:CDS
AATATGTTCAGAAGCTCTTT+TGG 0.267990 5.2:+42665658 None:intergenic
TTCTCCATCATTTACTATCC+TGG 0.274149 5.2:+42667204 None:intergenic
ATGGTTGAAATAAAGATCTT+TGG 0.283879 5.2:+42667447 None:intergenic
GCTTAAGGTTGCTGCTATTA+AGG 0.285891 5.2:-42665536 MS.gene053971:CDS
GAATTAGTCATGGGCATTCT+AGG 0.289012 5.2:+42663031 None:intergenic
AATATTTAGTATACCTTTGT+TGG 0.289037 5.2:+42663296 None:intergenic
GCCATCACCAACTAAGATAT+TGG 0.320538 5.2:+42666860 None:intergenic
TCTCAATCCCACGAGCAATT+TGG 0.323052 5.2:+42666471 None:intergenic
TACTGTAATAAGAGAAGATA+TGG 0.324638 5.2:-42664622 MS.gene053971:CDS
GGAGAATGTTGGGGTTAAAT+TGG 0.330128 5.2:-42666904 MS.gene053971:CDS
GGCATAGCCATGGGCTTTCT+AGG 0.333642 5.2:+42663052 None:intergenic
TAAACTTAGGGGTGTGCTTA+AGG 0.354930 5.2:-42665551 MS.gene053971:CDS
AGAATGCCCATGACTAATTC+AGG 0.357212 5.2:-42663028 MS.gene053971:intron
CTCTTGTAGGTTATTGCAGC+TGG 0.366669 5.2:-42666506 MS.gene053971:intron
CCTTCTTGGATAGTCTTAGA+AGG 0.370600 5.2:+42663958 None:intergenic
GGAGTAGTGACAATTGAAAA+AGG 0.378105 5.2:-42665908 MS.gene053971:CDS
AAGATCCATTGGAGAATGTT+GGG 0.381308 5.2:-42666914 MS.gene053971:CDS
GAAAATTGGTGCAGGTTGTT+AGG 0.385076 5.2:-42663189 MS.gene053971:intron
GAAGATATTGCCATCTTGAC+TGG 0.394235 5.2:-42665478 MS.gene053971:CDS
TTATTAATTTCAGATTGAAT+TGG 0.397182 5.2:-42666937 MS.gene053971:intron
AATAGTCTAGAGATTGTAGA+AGG 0.400336 5.2:-42665872 MS.gene053971:CDS
TCTCCATCATTTACTATCCT+GGG 0.409620 5.2:+42667205 None:intergenic
GTTGTGTTGCACAACAAGTA+TGG 0.420099 5.2:-42667232 MS.gene053971:CDS
GAGCTGCTTGGTGTTACATT+GGG 0.422685 5.2:-42667271 MS.gene053971:CDS
TGGTGTTACATTGGGTCCTA+AGG 0.423035 5.2:-42667263 MS.gene053971:CDS
CTTCGATCGGTGACGAAGTA+GGG 0.424516 5.2:+42665821 None:intergenic
ACATCTGTTGTTCTTGCTCA+TGG 0.432656 5.2:-42666831 MS.gene053971:CDS
TTGCATAAAGTAGGAAGAAA+AGG 0.444825 5.2:-42665929 MS.gene053971:CDS
GATTGAATTGGAAGATCCAT+TGG 0.446903 5.2:-42666925 MS.gene053971:CDS
AATTTATATTACCTTAAGAA+TGG 0.448885 5.2:+42664276 None:intergenic
TACTGTCATCTTTCTTCGAT+CGG 0.449682 5.2:+42665808 None:intergenic
TACTCCCATCAGTGACTAGT+AGG 0.452379 5.2:+42664526 None:intergenic
TCTTCGATCGGTGACGAAGT+AGG 0.456122 5.2:+42665820 None:intergenic
CCTGGACAATGAAGAGCAAA+AGG 0.470185 5.2:-42663916 MS.gene053971:intron
GATCTTTATTTCAACCATGA+TGG 0.471267 5.2:-42667442 MS.gene053971:CDS
AACATTGCAGGCAGCAATTG+AGG 0.471687 5.2:-42664009 MS.gene053971:intron
GACTTAGTGGCAGAGCTGCT+TGG 0.472024 5.2:-42667283 MS.gene053971:CDS
AAAAGAAGATATTGAATGAA+AGG 0.474163 5.2:-42664324 MS.gene053971:CDS
GAAGATCCATTGGAGAATGT+TGG 0.476886 5.2:-42666915 MS.gene053971:CDS
GTAGGCAGGGGTGGACTTAG+TGG 0.480322 5.2:-42667296 MS.gene053971:intron
ACAAACACAAGTAGAGTTGA+AGG 0.480475 5.2:-42664143 MS.gene053971:CDS
ATGGGCTTTCTACGTTGTAA+TGG 0.483727 5.2:+42663082 None:intergenic
ATTGAGGAAGGTGTAGTAGT+TGG 0.497962 5.2:-42663993 MS.gene053971:CDS
GTTAAATTGGTGAGACAAGC+TGG 0.504045 5.2:-42666891 MS.gene053971:CDS
GGCTTTCTAGGCATAGCCAT+GGG 0.508926 5.2:+42663064 None:intergenic
ACCAATATCTTAGTTGGTGA+TGG 0.509209 5.2:-42666861 MS.gene053971:CDS
ATCCCACGAGCAATTTGGAC+AGG 0.510632 5.2:+42666476 None:intergenic
AGAGCTGCTTGGTGTTACAT+TGG 0.512060 5.2:-42667272 MS.gene053971:CDS
CTAGAGAAGCAATTGAAAAG+AGG 0.512949 5.2:-42664503 MS.gene053971:CDS
TCAAATTAAGATCCTTGTTG+AGG 0.513328 5.2:-42664475 MS.gene053971:intron
TCTCATGAAGGCTAGAATCA+TGG 0.516872 5.2:-42663321 MS.gene053971:CDS
CTCTTGCGTTCCCCAAAAGC+AGG 0.519386 5.2:+42665511 None:intergenic
TGATACAAGAAGCTTCTTTG+TGG 0.525215 5.2:+42667414 None:intergenic
TGGCAATGTTGTCATAGATA+AGG 0.527203 5.2:-42663518 MS.gene053971:intron
TCTAATACCTGAATTAGTCA+TGG 0.529536 5.2:+42663021 None:intergenic
TCTGAGGCTTTGCATAAAGT+AGG 0.532283 5.2:-42665938 MS.gene053971:CDS
GCAGGGAACGATTATGTTGT+CGG 0.534522 5.2:-42665971 MS.gene053971:CDS
AACACAACATTTCTTCCCTT+AGG 0.534711 5.2:+42667247 None:intergenic
TCTTTGTGGTTGAACCATCA+TGG 0.536125 5.2:+42667428 None:intergenic
AGAACCAAGCACATCCGTGC+TGG 0.538805 5.2:+42664581 None:intergenic
CTTTGCGGTGTAGGCAGGGG+TGG 0.538867 5.2:-42667305 MS.gene053971:intron
CTTAATCAAAGAGGGAATGA+AGG 0.545189 5.2:-42666808 MS.gene053971:intron
AAAGCCAGCACGGATGTGCT+TGG 0.551613 5.2:-42664585 MS.gene053971:CDS
AGTTGCAGAGGGAATTGAGC+AGG 0.552599 5.2:-42665599 MS.gene053971:CDS
TAGAGAAGCAATTGAAAAGA+GGG 0.557169 5.2:-42664502 MS.gene053971:CDS
TGCTCATGGCTTAATCAAAG+AGG 0.559327 5.2:-42666817 MS.gene053971:CDS
TATAGAGCATGCAGCTTCTG+TGG 0.561462 5.2:-42663161 MS.gene053971:CDS
GAAGGTGTAGTAGTTGGTGG+TGG 0.561709 5.2:-42663987 MS.gene053971:CDS
CCACCCAGGATAGTAAATGA+TGG 0.563310 5.2:-42667208 MS.gene053971:CDS
CTAATACCTGAATTAGTCAT+GGG 0.563335 5.2:+42663022 None:intergenic
TCTACCCTACTAGTCACTGA+TGG 0.564415 5.2:-42664531 MS.gene053971:CDS
TCTTATACCTCCAGTCAAGA+TGG 0.565620 5.2:+42665468 None:intergenic
TGCTGCTAGAGACTGTTATG+AGG 0.567003 5.2:-42663345 MS.gene053971:CDS
TGGAGAAACTGTTCTCAAAG+AGG 0.567318 5.2:-42667188 MS.gene053971:intron
GGGCTTTCTAGGCATAGCCA+TGG 0.567432 5.2:+42663063 None:intergenic
GACAACATTGCCATTTACAC+CGG 0.568042 5.2:+42663528 None:intergenic
TGCTGTTGTGATTGACCGCA+TGG 0.570375 5.2:-42663116 MS.gene053971:CDS
GGTGTTACATTGGGTCCTAA+GGG 0.572289 5.2:-42667262 MS.gene053971:CDS
GCTCATGGCTTAATCAAAGA+GGG 0.577420 5.2:-42666816 MS.gene053971:CDS
TATGTTGCAGAAGTCAGCGC+AGG 0.579617 5.2:-42665989 MS.gene053971:CDS
CTGTTATGAGGATCTCATGA+AGG 0.584426 5.2:-42663333 MS.gene053971:CDS
TTAACCCCAACATTCTCCAA+TGG 0.585067 5.2:+42666909 None:intergenic
GGGCATTCTAGGCATAGCCA+TGG 0.589080 5.2:+42663042 None:intergenic
ACTCCCATCAGTGACTAGTA+GGG 0.589248 5.2:+42664527 None:intergenic
AAAGGATAGCAAGATTATCA+GGG 0.602789 5.2:-42664306 MS.gene053971:CDS
CTACCCTACTAGTCACTGAT+GGG 0.603767 5.2:-42664530 MS.gene053971:CDS
GAGGAAGGTGTAGTAGTTGG+TGG 0.604792 5.2:-42663990 MS.gene053971:CDS
AATCCTGTCCAAATTGCTCG+TGG 0.610174 5.2:-42666479 MS.gene053971:CDS
GGCTATGCCTAGAAAGCCCA+TGG 0.611650 5.2:-42663059 MS.gene053971:CDS
TGTCGGAAACATGATTTCTG+AGG 0.613481 5.2:-42665954 MS.gene053971:CDS
CCTTCTAAGACTATCCAAGA+AGG 0.614465 5.2:-42663958 MS.gene053971:CDS
ACTGTAATAAGAGAAGATAT+GGG 0.620581 5.2:-42664621 MS.gene053971:CDS
TTGTGTTGCACAACAAGTAT+GGG 0.623105 5.2:-42667231 MS.gene053971:CDS
AGATCCATTGGAGAATGTTG+GGG 0.623470 5.2:-42666913 MS.gene053971:CDS
GGCATTCTAGGCATAGCCAT+GGG 0.628138 5.2:+42663043 None:intergenic
TCTAAGACTATCCAAGAAGG+TGG 0.633828 5.2:-42663955 MS.gene053971:CDS
TTGCAGGCAGCAATTGAGGA+AGG 0.634346 5.2:-42664005 MS.gene053971:intron
ATCCTGTCCAAATTGCTCGT+GGG 0.638174 5.2:-42666478 MS.gene053971:CDS
CCATCATTTACTATCCTGGG+TGG 0.643127 5.2:+42667208 None:intergenic
AGATGCCTTAAATGCAACCA+AGG 0.644330 5.2:-42664101 MS.gene053971:intron
GAAGGAATGCAATTCGATCG+CGG 0.648682 5.2:-42665854 MS.gene053971:CDS
ACAACAAGTATGGGCCACCC+AGG 0.649218 5.2:-42667222 MS.gene053971:CDS
TAGAATCATGGATCCAACAA+AGG 0.660491 5.2:-42663309 MS.gene053971:intron
GATATTGCCATCTTGACTGG+AGG 0.662526 5.2:-42665475 MS.gene053971:intron
AGTAGATCTTCACAACTGCA+AGG 0.668006 5.2:-42665789 MS.gene053971:intron
ATTACAACGTAGAAAGCCCA+TGG 0.668199 5.2:-42663080 MS.gene053971:CDS
ATGTTGCAGAAGTCAGCGCA+GGG 0.672978 5.2:-42665988 MS.gene053971:CDS
AAGGATAGCAAGATTATCAG+GGG 0.686126 5.2:-42664305 MS.gene053971:CDS
ATGGTTGTTCTAGTTCCATG+CGG 0.719533 5.2:+42663101 None:intergenic
AGGATAGCAAGATTATCAGG+GGG 0.726273 5.2:-42664304 MS.gene053971:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATTCTATAAAATAATT+AGG - chr5.2:42664601-42664620 MS.gene053971:CDS 10.0%
!! ATTATTAAAAATAAACTTAG+GGG - chr5.2:42664774-42664793 MS.gene053971:intron 10.0%
!! CAATTATTAAAAATAAACTT+AGG - chr5.2:42664772-42664791 MS.gene053971:intron 10.0%
!!! AATCATTTTATTTTCATTTT+TGG - chr5.2:42666085-42666104 MS.gene053971:intron 10.0%
!!! AATGTTTTATATATTACAAT+TGG - chr5.2:42667356-42667375 MS.gene053971:intron 10.0%
!!! CTAAGTTTATTTTTAATAAT+TGG + chr5.2:42664774-42664793 None:intergenic 10.0%
!! AAACAAAAATCATAGAAAAA+TGG + chr5.2:42664145-42664164 None:intergenic 15.0%
!! AATTTATATTACCTTAAGAA+TGG + chr5.2:42666063-42666082 None:intergenic 15.0%
!! ATACGATAATAATTCATTAA+AGG - chr5.2:42665202-42665221 MS.gene053971:intron 15.0%
!! CAAAAGTTTAGTAATATAAA+AGG + chr5.2:42667424-42667443 None:intergenic 15.0%
!! TTATTAATTTCAGATTGAAT+TGG - chr5.2:42663399-42663418 MS.gene053971:intron 15.0%
!!! TTTCATTACTATTCTAAAAA+TGG + chr5.2:42664188-42664207 None:intergenic 15.0%
!! AAAAGAAGATATTGAATGAA+AGG - chr5.2:42666012-42666031 MS.gene053971:CDS 20.0%
!! AATATTTAGTATACCTTTGT+TGG + chr5.2:42667043-42667062 None:intergenic 20.0%
!! GTATTATGTATGTTGAAAAT+TGG - chr5.2:42667133-42667152 MS.gene053971:intron 20.0%
!! TAAATATTCAAACCAACAAA+AGG + chr5.2:42666689-42666708 None:intergenic 20.0%
!! TAATGTAAAGTCAAAATTAC+AGG + chr5.2:42665007-42665026 None:intergenic 20.0%
!! TCAGTAACTATTTAGAAAAA+TGG - chr5.2:42666550-42666569 MS.gene053971:intron 20.0%
!! TCCATTAAAACTTTCAAATA+TGG + chr5.2:42663666-42663685 None:intergenic 20.0%
!! TCTAATATTATACAATGATC+TGG + chr5.2:42665898-42665917 None:intergenic 20.0%
!! TTAATTAAACCATAAGAATG+TGG + chr5.2:42663238-42663257 None:intergenic 20.0%
!! TTCAAACTTTATCATATCTT+TGG + chr5.2:42665285-42665304 None:intergenic 20.0%
!!! AAATCATAGAAAAATGGATT+TGG + chr5.2:42664139-42664158 None:intergenic 20.0%
!!! ACCATATTTGAAAGTTTTAA+TGG - chr5.2:42663662-42663681 MS.gene053971:intron 20.0%
!!! ATTTTATAGAATTCATGTGA+GGG + chr5.2:42664597-42664616 None:intergenic 20.0%
!!! TATTTTATAGAATTCATGTG+AGG + chr5.2:42664598-42664617 None:intergenic 20.0%
!!! TTATTTTCATTTTTGGTATC+AGG - chr5.2:42666092-42666111 MS.gene053971:intron 20.0%
!!! TTTGACTTTACATTACAATA+TGG - chr5.2:42665012-42665031 MS.gene053971:intron 20.0%
!!! TTTGCAATTTTGGAATATTT+TGG + chr5.2:42663719-42663738 None:intergenic 20.0%
! AACCAAATTTATAGAGGAAA+AGG - chr5.2:42665361-42665380 MS.gene053971:intron 25.0%
! AATGAATTATTATCGTATGC+TGG + chr5.2:42665200-42665219 None:intergenic 25.0%
! ACTGTAATAAGAGAAGATAT+GGG - chr5.2:42665715-42665734 MS.gene053971:intron 25.0%
! AGAACCTGAATCTAAATTAT+AGG - chr5.2:42666163-42666182 MS.gene053971:intron 25.0%
! ATGATAAAGTTTGAATTGCA+TGG - chr5.2:42665290-42665309 MS.gene053971:intron 25.0%
! ATGGTTGAAATAAAGATCTT+TGG + chr5.2:42662892-42662911 None:intergenic 25.0%
! ATTAGAATGAATTTGATGCA+TGG - chr5.2:42665912-42665931 MS.gene053971:CDS 25.0%
! CAAAATTGCAAATGAAGTTT+GGG - chr5.2:42663727-42663746 MS.gene053971:intron 25.0%
! GTATTCTACAAAATACGAAA+TGG + chr5.2:42665978-42665997 None:intergenic 25.0%
! TACTGTAATAAGAGAAGATA+TGG - chr5.2:42665714-42665733 MS.gene053971:intron 25.0%
! TAGTTAACAACATCTGAAAA+AGG - chr5.2:42665939-42665958 MS.gene053971:CDS 25.0%
! TGGAAAACAACATTATTGTA+CGG + chr5.2:42665265-42665284 None:intergenic 25.0%
! TTGTAATGTTATCTGTAGAT+TGG - chr5.2:42666729-42666748 MS.gene053971:intron 25.0%
!! ATCTTTTGTAATGACAACTT+TGG + chr5.2:42665785-42665804 None:intergenic 25.0%
!! ATGAAAAGAGCACAAATTTA+AGG + chr5.2:42663809-42663828 None:intergenic 25.0%
!! ATTCTAATTTGTAACATTGC+AGG - chr5.2:42666315-42666334 MS.gene053971:intron 25.0%
!! GTGGTAAATGGTAATTTTAT+GGG + chr5.2:42663219-42663238 None:intergenic 25.0%
!! TGTGGTAAATGGTAATTTTA+TGG + chr5.2:42663220-42663239 None:intergenic 25.0%
!! TTGGAACACTAAACTAATTT+TGG + chr5.2:42663607-42663626 None:intergenic 25.0%
!! TTTTACTTATATCTTCTGTG+AGG + chr5.2:42667072-42667091 None:intergenic 25.0%
!!! ATTCATGGTTGTTTTGTTAT+TGG + chr5.2:42665485-42665504 None:intergenic 25.0%
!!! GAAATACCGATTTTGAAATA+TGG - chr5.2:42664053-42664072 MS.gene053971:intron 25.0%
!!! GATATTTTGATTGAAGTTGT+TGG + chr5.2:42663626-42663645 None:intergenic 25.0%
!!! TTTTTCGCTATCATTTTAGT+AGG + chr5.2:42666786-42666805 None:intergenic 25.0%
AAAGGATAGCAAGATTATCA+GGG - chr5.2:42666030-42666049 MS.gene053971:intron 30.0%
AACCATAAGAATGTGGTAAA+TGG + chr5.2:42663231-42663250 None:intergenic 30.0%
AATAGTCTAGAGATTGTAGA+AGG - chr5.2:42664464-42664483 MS.gene053971:intron 30.0%
ACAACGAACCAAATTTATAG+AGG - chr5.2:42665355-42665374 MS.gene053971:intron 30.0%
ACCATATTGTTCAATTCACT+CGG + chr5.2:42665592-42665611 None:intergenic 30.0%
ACTAATTCAGGTATTAGAGT+GGG - chr5.2:42667320-42667339 MS.gene053971:intron 30.0%
AGCACTCCATATTTCAAAAT+CGG + chr5.2:42664062-42664081 None:intergenic 30.0%
ATATTTACTCAGTGCATTCT+TGG - chr5.2:42665680-42665699 MS.gene053971:CDS 30.0%
CACAAAGATAGCATCAAAAT+TGG - chr5.2:42665090-42665109 MS.gene053971:intron 30.0%
CCAAAATTGCAAATGAAGTT+TGG - chr5.2:42663726-42663745 MS.gene053971:intron 30.0%
CCTACCTATAATTTAGATTC+AGG + chr5.2:42666170-42666189 None:intergenic 30.0%
CCTGAATCTAAATTATAGGT+AGG - chr5.2:42666167-42666186 MS.gene053971:intron 30.0%
CTAATACCTGAATTAGTCAT+GGG + chr5.2:42667317-42667336 None:intergenic 30.0%
GAACAATATGGTAGAATACA+TGG - chr5.2:42665600-42665619 MS.gene053971:CDS 30.0%
GCAAAAACCAATATCTTAGT+TGG - chr5.2:42663469-42663488 MS.gene053971:intron 30.0%
GTTTAATAGGTCTAAGAACA+TGG - chr5.2:42663363-42663382 MS.gene053971:CDS 30.0%
TACCATTTACCACATTCTTA+TGG - chr5.2:42663226-42663245 MS.gene053971:intron 30.0%
TAGAGAAGCAATTGAAAAGA+GGG - chr5.2:42665834-42665853 MS.gene053971:CDS 30.0%
TCAAATTAAGATCCTTGTTG+AGG - chr5.2:42665861-42665880 MS.gene053971:CDS 30.0%
TCTAATACCTGAATTAGTCA+TGG + chr5.2:42667318-42667337 None:intergenic 30.0%
TTGCATAAAGTAGGAAGAAA+AGG - chr5.2:42664407-42664426 MS.gene053971:intron 30.0%
TTGCTGAATTCAGAAACATT+GGG - chr5.2:42664289-42664308 MS.gene053971:CDS 30.0%
! AAAATGATAGCGAAAAATGC+CGG - chr5.2:42666789-42666808 MS.gene053971:intron 30.0%
! AATATGTTCAGAAGCTCTTT+TGG + chr5.2:42664681-42664700 None:intergenic 30.0%
! AGCCTTTTCCTCTATAAATT+TGG + chr5.2:42665366-42665385 None:intergenic 30.0%
! AGTGAGTGAATTTTTCTTTG+CGG - chr5.2:42663016-42663035 MS.gene053971:intron 30.0%
! CCAAACTTCATTTGCAATTT+TGG + chr5.2:42663729-42663748 None:intergenic 30.0%
! GATCTTTATTTCAACCATGA+TGG - chr5.2:42662894-42662913 MS.gene053971:intron 30.0%
! GCAGATGATAACATGAATTT+TGG - chr5.2:42666962-42666981 MS.gene053971:intron 30.0%
!! ACAAATGCTATTGACTTTAG+GGG - chr5.2:42663780-42663799 MS.gene053971:intron 30.0%
!! CACAAATGCTATTGACTTTA+GGG - chr5.2:42663779-42663798 MS.gene053971:intron 30.0%
!! TTTACACACTTTGAGATGAA+TGG - chr5.2:42664162-42664181 MS.gene053971:intron 30.0%
!!! ATTTTGAAATATGGAGTGCT+TGG - chr5.2:42664062-42664081 MS.gene053971:intron 30.0%
!!! GGTTGTTTTGTTATTGGTTT+AGG + chr5.2:42665479-42665498 None:intergenic 30.0%
!!! TTTGGTTTGTATCCTTTTGT+TGG - chr5.2:42666674-42666693 MS.gene053971:intron 30.0%
AACACAACATTTCTTCCCTT+AGG + chr5.2:42663092-42663111 None:intergenic 35.0%
AACTACAAGCGAGAATTGAT+AGG + chr5.2:42664261-42664280 None:intergenic 35.0%
AAGATCCATTGGAGAATGTT+GGG - chr5.2:42663422-42663441 MS.gene053971:intron 35.0%
AAGGATAGCAAGATTATCAG+GGG - chr5.2:42666031-42666050 MS.gene053971:intron 35.0%
AAGTACCTTGGTTGCATTTA+AGG + chr5.2:42666243-42666262 None:intergenic 35.0%
ACAAACACAAGTAGAGTTGA+AGG - chr5.2:42666193-42666212 MS.gene053971:intron 35.0%
ACACATTGAAGCAGAGAAAA+AGG + chr5.2:42666266-42666285 None:intergenic 35.0%
ACCGAGTGAATTGAACAATA+TGG - chr5.2:42665588-42665607 MS.gene053971:CDS 35.0%
ACTATTCCATCTACTTCTGT+TGG - chr5.2:42663573-42663592 MS.gene053971:CDS 35.0%
ATATTGTTCAATTCACTCGG+TGG + chr5.2:42665589-42665608 None:intergenic 35.0%
ATTGAAGTGGCTTATAGTAG+AGG + chr5.2:42665434-42665453 None:intergenic 35.0%
ATTGTTCCAACAGAAGTAGA+TGG + chr5.2:42663582-42663601 None:intergenic 35.0%
CAATATGGTAGAATACATGG+TGG - chr5.2:42665603-42665622 MS.gene053971:CDS 35.0%
CCTAAAGTCAATAGCATTTG+TGG + chr5.2:42663781-42663800 None:intergenic 35.0%
CTAAGATCAAAAGCTAGTGA+TGG + chr5.2:42665635-42665654 None:intergenic 35.0%
CTAGAGAAGCAATTGAAAAG+AGG - chr5.2:42665833-42665852 MS.gene053971:CDS 35.0%
CTATTAAACCACCTAAGCAA+CGG + chr5.2:42663352-42663371 None:intergenic 35.0%
CTTAATCAAAGAGGGAATGA+AGG - chr5.2:42663528-42663547 MS.gene053971:CDS 35.0%
CTTGCTGAATTCAGAAACAT+TGG - chr5.2:42664288-42664307 MS.gene053971:CDS 35.0%
GAAAGGATAGCAAGATTATC+AGG - chr5.2:42666029-42666048 MS.gene053971:intron 35.0%
GAATGAATGTAAGCTCATGT+CGG - chr5.2:42666580-42666599 MS.gene053971:intron 35.0%
GACTAATTCAGGTATTAGAG+TGG - chr5.2:42667319-42667338 MS.gene053971:intron 35.0%
GATTGAATTGGAAGATCCAT+TGG - chr5.2:42663411-42663430 MS.gene053971:intron 35.0%
GGAGTAGTGACAATTGAAAA+AGG - chr5.2:42664428-42664447 MS.gene053971:intron 35.0%
GGATAGCATAAAAATTCTCC+TGG - chr5.2:42666402-42666421 MS.gene053971:intron 35.0%
GTAGATGGAATAGTCATGTA+TGG + chr5.2:42663567-42663586 None:intergenic 35.0%
TACTGTCATCTTTCTTCGAT+CGG + chr5.2:42664531-42664550 None:intergenic 35.0%
TAGAATCATGGATCCAACAA+AGG - chr5.2:42667027-42667046 MS.gene053971:intron 35.0%
TATCAATTCTCGCTTGTAGT+TGG - chr5.2:42664260-42664279 MS.gene053971:intron 35.0%
TATGCAAAAACATCACTGCT+TGG - chr5.2:42665150-42665169 MS.gene053971:intron 35.0%
TCTCCATCATTTACTATCCT+GGG + chr5.2:42663134-42663153 None:intergenic 35.0%
TGAAAAATCACCTCCAATTG+TGG + chr5.2:42663312-42663331 None:intergenic 35.0%
TGATACAAGAAGCTTCTTTG+TGG + chr5.2:42662925-42662944 None:intergenic 35.0%
TGCTGAATTCAGAAACATTG+GGG - chr5.2:42664290-42664309 MS.gene053971:CDS 35.0%
TGGCAATGTTGTCATAGATA+AGG - chr5.2:42666818-42666837 MS.gene053971:CDS 35.0%
TGGGTGAATGACTAAAAAGA+AGG + chr5.2:42663200-42663219 None:intergenic 35.0%
TGTATGTTGAAAATTGGTGC+AGG - chr5.2:42667139-42667158 MS.gene053971:intron 35.0%
TTCTCCATCATTTACTATCC+TGG + chr5.2:42663135-42663154 None:intergenic 35.0%
TTGATTGACTGTACCACAAT+TGG - chr5.2:42663296-42663315 MS.gene053971:intron 35.0%
TTGTGTTGCACAACAAGTAT+GGG - chr5.2:42663105-42663124 MS.gene053971:CDS 35.0%
TTTGTGGCGTAAGCATATAA+TGG + chr5.2:42663765-42663784 None:intergenic 35.0%
! TCTGTTGCAAGCATTCTTTT+TGG - chr5.2:42666656-42666675 MS.gene053971:intron 35.0%
! TGAATTTTTCTTTGCGGTGT+AGG - chr5.2:42663022-42663041 MS.gene053971:intron 35.0%
! TGCTCTTTTCATTCTCTTGT+AGG - chr5.2:42663817-42663836 MS.gene053971:intron 35.0%
! TTGTACGGACAAATTGACTT+TGG + chr5.2:42665250-42665269 None:intergenic 35.0%
! TTTTATGCTATCCACCTTCT+TGG + chr5.2:42666395-42666414 None:intergenic 35.0%
!! ACCAATATCTTAGTTGGTGA+TGG - chr5.2:42663475-42663494 MS.gene053971:intron 35.0%
!! CCAATTTTGATAGTTGCAGA+GGG - chr5.2:42664726-42664745 MS.gene053971:intron 35.0%
!! CCACAAATGCTATTGACTTT+AGG - chr5.2:42663778-42663797 MS.gene053971:intron 35.0%
!! TATTGGTTTAGGCATTACAC+TGG + chr5.2:42665468-42665487 None:intergenic 35.0%
!! TCCAATTTTGATAGTTGCAG+AGG - chr5.2:42664725-42664744 MS.gene053971:intron 35.0%
AAACACTTGTACCGTTGCTT+AGG - chr5.2:42663338-42663357 MS.gene053971:CDS 40.0%
AACAGTTTCTCAAGAACCTC+AGG + chr5.2:42666845-42666864 None:intergenic 40.0%
ACATCTGTTGTTCTTGCTCA+TGG - chr5.2:42663505-42663524 MS.gene053971:intron 40.0%
ACATTGGGGTTTGCATTTGT+AGG - chr5.2:42664304-42664323 MS.gene053971:CDS 40.0%
AGAATGCCCATGACTAATTC+AGG - chr5.2:42667308-42667327 MS.gene053971:intron 40.0%
AGATCCATTGGAGAATGTTG+GGG - chr5.2:42663423-42663442 MS.gene053971:intron 40.0%
AGATGCCTTAAATGCAACCA+AGG - chr5.2:42666235-42666254 MS.gene053971:intron 40.0%
AGGATAGCAAGATTATCAGG+GGG - chr5.2:42666032-42666051 MS.gene053971:intron 40.0%
AGTAGATCTTCACAACTGCA+AGG - chr5.2:42664547-42664566 MS.gene053971:CDS 40.0%
ATGGGCTTTCTACGTTGTAA+TGG + chr5.2:42667257-42667276 None:intergenic 40.0%
ATTACAACGTAGAAAGCCCA+TGG - chr5.2:42667256-42667275 MS.gene053971:CDS 40.0%
ATTGACTGTACCACAATTGG+AGG - chr5.2:42663299-42663318 MS.gene053971:intron 40.0%
CCCTCTGCAACTATCAAAAT+TGG + chr5.2:42664729-42664748 None:intergenic 40.0%
CGTTGCTTAGGTGGTTTAAT+AGG - chr5.2:42663350-42663369 MS.gene053971:CDS 40.0%
CTGTTATGAGGATCTCATGA+AGG - chr5.2:42667003-42667022 MS.gene053971:intron 40.0%
CTTCAGATTGAAGACGTGTT+TGG + chr5.2:42666631-42666650 None:intergenic 40.0%
GAAAATTGGTGCAGGTTGTT+AGG - chr5.2:42667147-42667166 MS.gene053971:intron 40.0%
GAAGATATTGCCATCTTGAC+TGG - chr5.2:42664858-42664877 MS.gene053971:intron 40.0%
GAAGATCCATTGGAGAATGT+TGG - chr5.2:42663421-42663440 MS.gene053971:intron 40.0%
GAATTAGTCATGGGCATTCT+AGG + chr5.2:42667308-42667327 None:intergenic 40.0%
GACGTTTGATTCAGATCAGA+CGG - chr5.2:42663992-42664011 MS.gene053971:CDS 40.0%
GCCATCACCAACTAAGATAT+TGG + chr5.2:42663479-42663498 None:intergenic 40.0%
GCTCATGGCTTAATCAAAGA+GGG - chr5.2:42663520-42663539 MS.gene053971:CDS 40.0%
GCTTAAGGTTGCTGCTATTA+AGG - chr5.2:42664800-42664819 MS.gene053971:intron 40.0%
GGAGAATGTTGGGGTTAAAT+TGG - chr5.2:42663432-42663451 MS.gene053971:intron 40.0%
GTGCATTCTTGGAACTTATC+AGG - chr5.2:42665691-42665710 MS.gene053971:CDS 40.0%
GTTAAATTGGTGAGACAAGC+TGG - chr5.2:42663445-42663464 MS.gene053971:intron 40.0%
GTTGTGTTGCACAACAAGTA+TGG - chr5.2:42663104-42663123 MS.gene053971:CDS 40.0%
TCACACTGTTATTACATCGC+TGG - chr5.2:42663970-42663989 MS.gene053971:CDS 40.0%
TCTCATGAAGGCTAGAATCA+TGG - chr5.2:42667015-42667034 MS.gene053971:intron 40.0%
TCTTATACCTCCAGTCAAGA+TGG + chr5.2:42664871-42664890 None:intergenic 40.0%
TCTTTGTGGTTGAACCATCA+TGG + chr5.2:42662911-42662930 None:intergenic 40.0%
TGCTCATGGCTTAATCAAAG+AGG - chr5.2:42663519-42663538 MS.gene053971:CDS 40.0%
TGGAGAAACTGTTCTCAAAG+AGG - chr5.2:42663148-42663167 MS.gene053971:CDS 40.0%
TGTCGGAAACATGATTTCTG+AGG - chr5.2:42664382-42664401 MS.gene053971:intron 40.0%
TTAACCCCAACATTCTCCAA+TGG + chr5.2:42663430-42663449 None:intergenic 40.0%
TTGTCATAGATAAGGTCCTG+AGG - chr5.2:42666826-42666845 MS.gene053971:CDS 40.0%
TTTATGAGTGAGTGCGTATG+TGG + chr5.2:42666524-42666543 None:intergenic 40.0%
! ATTGAGGAAGGTGTAGTAGT+TGG - chr5.2:42666343-42666362 MS.gene053971:intron 40.0%
! CCTTCTTGGATAGTCTTAGA+AGG + chr5.2:42666381-42666400 None:intergenic 40.0%
! GACAACATTGCCATTTACAC+CGG + chr5.2:42666811-42666830 None:intergenic 40.0%
! GTTTTCTCTGTACCTCAACA+AGG + chr5.2:42665876-42665895 None:intergenic 40.0%
! TAAACTTAGGGGTGTGCTTA+AGG - chr5.2:42664785-42664804 MS.gene053971:intron 40.0%
! TCTAAGACTATCCAAGAAGG+TGG - chr5.2:42666381-42666400 MS.gene053971:intron 40.0%
! TCTGAGGCTTTGCATAAAGT+AGG - chr5.2:42664398-42664417 MS.gene053971:intron 40.0%
! TGGATTTTCACAGGTCGAAA+GGG + chr5.2:42665512-42665531 None:intergenic 40.0%
! TTGGATTTTCACAGGTCGAA+AGG + chr5.2:42665513-42665532 None:intergenic 40.0%
!! AGTGCTTGGTTTTTATCCGA+CGG - chr5.2:42664076-42664095 MS.gene053971:intron 40.0%
!! ATGGTTGTTCTAGTTCCATG+CGG + chr5.2:42667238-42667257 None:intergenic 40.0%
!! CAGAGAAAAAGGAAGTACCT+TGG + chr5.2:42666255-42666274 None:intergenic 40.0%
!! CCTTCTAAGACTATCCAAGA+AGG - chr5.2:42666378-42666397 MS.gene053971:intron 40.0%
!! CTATTAAGGCTCCTGCTTTT+GGG - chr5.2:42664814-42664833 MS.gene053971:intron 40.0%
!! GCAGTGATGTTTTTGCATAG+TGG + chr5.2:42665149-42665168 None:intergenic 40.0%
!! TATTAAGGCTCCTGCTTTTG+GGG - chr5.2:42664815-42664834 MS.gene053971:intron 40.0%
AACATTGCAGGCAGCAATTG+AGG - chr5.2:42666327-42666346 MS.gene053971:intron 45.0%
AATCCTGTCCAAATTGCTCG+TGG - chr5.2:42663857-42663876 MS.gene053971:intron 45.0%
ACTCCCATCAGTGACTAGTA+GGG + chr5.2:42665812-42665831 None:intergenic 45.0%
ATCCTGTCCAAATTGCTCGT+GGG - chr5.2:42663858-42663877 MS.gene053971:intron 45.0%
CACCTTAGAAAAAGCCAGCA+CGG - chr5.2:42665741-42665760 MS.gene053971:intron 45.0%
CCACCCAGGATAGTAAATGA+TGG - chr5.2:42663128-42663147 MS.gene053971:CDS 45.0%
CCATCATTTACTATCCTGGG+TGG + chr5.2:42663131-42663150 None:intergenic 45.0%
CCTGGACAATGAAGAGCAAA+AGG - chr5.2:42666420-42666439 MS.gene053971:intron 45.0%
CTACCCTACTAGTCACTGAT+GGG - chr5.2:42665806-42665825 MS.gene053971:CDS 45.0%
CTCTTGTAGGTTATTGCAGC+TGG - chr5.2:42663830-42663849 MS.gene053971:intron 45.0%
GAAGGAATGCAATTCGATCG+CGG - chr5.2:42664482-42664501 MS.gene053971:CDS 45.0%
GATATTGCCATCTTGACTGG+AGG - chr5.2:42664861-42664880 MS.gene053971:intron 45.0%
GCAGGGAACGATTATGTTGT+CGG - chr5.2:42664365-42664384 MS.gene053971:intron 45.0%
GCGAAAAATGCCGGTGTAAA+TGG - chr5.2:42666798-42666817 MS.gene053971:intron 45.0%
GGGTTTGCATTTGTAGGTTG+AGG - chr5.2:42664310-42664329 MS.gene053971:CDS 45.0%
GGTCGAAAGGGTTTGATTCA+TGG + chr5.2:42665500-42665519 None:intergenic 45.0%
TACTCCCATCAGTGACTAGT+AGG + chr5.2:42665813-42665832 None:intergenic 45.0%
TAGCATATCTTCTGTCGTGC+AGG - chr5.2:42666934-42666953 MS.gene053971:intron 45.0%
TATAGAGCATGCAGCTTCTG+TGG - chr5.2:42667175-42667194 MS.gene053971:intron 45.0%
TCTACCCTACTAGTCACTGA+TGG - chr5.2:42665805-42665824 MS.gene053971:CDS 45.0%
TCTCAATCCCACGAGCAATT+TGG + chr5.2:42663868-42663887 None:intergenic 45.0%
TGCTGCTAGAGACTGTTATG+AGG - chr5.2:42666991-42667010 MS.gene053971:intron 45.0%
! CCTTTTGCTCTTCATTGTCC+AGG + chr5.2:42666423-42666442 None:intergenic 45.0%
! GCTATTAAGGCTCCTGCTTT+TGG - chr5.2:42664813-42664832 MS.gene053971:intron 45.0%
! GGTGTTACATTGGGTCCTAA+GGG - chr5.2:42663074-42663093 MS.gene053971:CDS 45.0%
! GGTTCTCTCATCGATTGAAG+TGG + chr5.2:42665447-42665466 None:intergenic 45.0%
! TTTTCTTTGCGGTGTAGGCA+GGG - chr5.2:42663027-42663046 MS.gene053971:intron 45.0%
! TTTTTCTTTGCGGTGTAGGC+AGG - chr5.2:42663026-42663045 MS.gene053971:intron 45.0%
!! AGAGCTGCTTGGTGTTACAT+TGG - chr5.2:42663064-42663083 MS.gene053971:CDS 45.0%
!! GAGCTGCTTGGTGTTACATT+GGG - chr5.2:42663065-42663084 MS.gene053971:CDS 45.0%
!! TGGTGTTACATTGGGTCCTA+AGG - chr5.2:42663073-42663092 MS.gene053971:CDS 45.0%
!!! ATCCGTGCTGGCTTTTTCTA+AGG + chr5.2:42665746-42665765 None:intergenic 45.0%
!! AATTATTAAAAATAAACTTA+GGG - chr5.2:42664773-42664792 MS.gene053971:intron 5.0%
AAAATCCAACCACCTCCAGC+TGG - chr5.2:42665524-42665543 MS.gene053971:CDS 50.0%
ACTGGTAGGATGAAGCCAGA+GGG + chr5.2:42665559-42665578 None:intergenic 50.0%
AGTTGCAGAGGGAATTGAGC+AGG - chr5.2:42664737-42664756 MS.gene053971:intron 50.0%
ATCCCACGAGCAATTTGGAC+AGG + chr5.2:42663863-42663882 None:intergenic 50.0%
ATGTTGCAGAAGTCAGCGCA+GGG - chr5.2:42664348-42664367 MS.gene053971:intron 50.0%
CACTTGTACCGTTGCTTAGG+TGG - chr5.2:42663341-42663360 MS.gene053971:CDS 50.0%
CTTCGATCGGTGACGAAGTA+GGG + chr5.2:42664518-42664537 None:intergenic 50.0%
GAGTACACATCATGGACCGT+CGG + chr5.2:42664095-42664114 None:intergenic 50.0%
GGCATTCTAGGCATAGCCAT+GGG + chr5.2:42667296-42667315 None:intergenic 50.0%
GGCTTTCTAGGCATAGCCAT+GGG + chr5.2:42667275-42667294 None:intergenic 50.0%
GGTCCATGATGTGTACTCGT+GGG - chr5.2:42664097-42664116 MS.gene053971:intron 50.0%
GTCCATGATGTGTACTCGTG+GGG - chr5.2:42664098-42664117 MS.gene053971:intron 50.0%
TAATTGACCCGTGCACTGCA+CGG + chr5.2:42667449-42667468 None:intergenic 50.0%
TATGTTGCAGAAGTCAGCGC+AGG - chr5.2:42664347-42664366 MS.gene053971:intron 50.0%
TCTTCGATCGGTGACGAAGT+AGG + chr5.2:42664519-42664538 None:intergenic 50.0%
TGCTGTTGTGATTGACCGCA+TGG - chr5.2:42667220-42667239 MS.gene053971:CDS 50.0%
TGGCTTCATCCTACCAGTGT+CGG - chr5.2:42665561-42665580 MS.gene053971:CDS 50.0%
TGTACTCGTGGGGTGAATGT+GGG - chr5.2:42664108-42664127 MS.gene053971:CDS 50.0%
TTGCAGGCAGCAATTGAGGA+AGG - chr5.2:42666331-42666350 MS.gene053971:intron 50.0%
TTTCTTTGCGGTGTAGGCAG+GGG - chr5.2:42663028-42663047 MS.gene053971:intron 50.0%
! GAGGAAGGTGTAGTAGTTGG+TGG - chr5.2:42666346-42666365 MS.gene053971:intron 50.0%
! GGAGGTGGTTGGATTTTCAC+AGG + chr5.2:42665521-42665540 None:intergenic 50.0%
!! AGGGGGCATTGCCATTCTTA+AGG - chr5.2:42666049-42666068 MS.gene053971:intron 50.0%
!! GAAGGTGTAGTAGTTGGTGG+TGG - chr5.2:42666349-42666368 MS.gene053971:intron 50.0%
AAAGCCAGCACGGATGTGCT+TGG - chr5.2:42665751-42665770 MS.gene053971:intron 55.0%
AATTGACCCGTGCACTGCAC+GGG + chr5.2:42667448-42667467 None:intergenic 55.0%
ACAACAAGTATGGGCCACCC+AGG - chr5.2:42663114-42663133 MS.gene053971:CDS 55.0%
AGAACCAAGCACATCCGTGC+TGG + chr5.2:42665758-42665777 None:intergenic 55.0%
CACCCCACGAGTACACATCA+TGG + chr5.2:42664103-42664122 None:intergenic 55.0%
CACTGGTAGGATGAAGCCAG+AGG + chr5.2:42665560-42665579 None:intergenic 55.0%
CGGTCCATGATGTGTACTCG+TGG - chr5.2:42664096-42664115 MS.gene053971:intron 55.0%
CTCTTGCGTTCCCCAAAAGC+AGG + chr5.2:42664828-42664847 None:intergenic 55.0%
GACTTAGTGGCAGAGCTGCT+TGG - chr5.2:42663053-42663072 MS.gene053971:CDS 55.0%
GCATGGACGAGACAAGTGTG+AGG - chr5.2:42665307-42665326 MS.gene053971:intron 55.0%
GCTTCATCCTACCAGTGTCG+GGG - chr5.2:42665563-42665582 MS.gene053971:CDS 55.0%
GGCATAGCCATGGGCTTTCT+AGG + chr5.2:42667266-42667285 None:intergenic 55.0%
GGCTATGCCTAGAAAGCCCA+TGG - chr5.2:42667277-42667296 MS.gene053971:CDS 55.0%
GGCTTCATCCTACCAGTGTC+GGG - chr5.2:42665562-42665581 MS.gene053971:CDS 55.0%
GGGCATTCTAGGCATAGCCA+TGG + chr5.2:42667297-42667316 None:intergenic 55.0%
GGGCTTTCTAGGCATAGCCA+TGG + chr5.2:42667276-42667295 None:intergenic 55.0%
GTGTACTCGTGGGGTGAATG+TGG - chr5.2:42664107-42664126 MS.gene053971:CDS 55.0%
! CTTTTGACCCGTGCAGTGCA+CGG - chr5.2:42667438-42667457 MS.gene053971:CDS 55.0%
! TTTTGACCCGTGCAGTGCAC+GGG - chr5.2:42667439-42667458 MS.gene053971:CDS 55.0%
AACCACCTCCAGCTGGACCA+GGG - chr5.2:42665531-42665550 MS.gene053971:CDS 60.0%
! GTAGGCAGGGGTGGACTTAG+TGG - chr5.2:42663040-42663059 MS.gene053971:CDS 60.0%
ACCACCTCCAGCTGGACCAG+GGG - chr5.2:42665532-42665551 MS.gene053971:CDS 65.0%
CAACCACCTCCAGCTGGACC+AGG - chr5.2:42665530-42665549 MS.gene053971:CDS 65.0%
CTGGTCCAGCTGGAGGTGGT+TGG + chr5.2:42665532-42665551 None:intergenic 65.0%
CTTTGCGGTGTAGGCAGGGG+TGG - chr5.2:42663031-42663050 MS.gene053971:CDS 65.0%
GATGAAGCCAGAGGGTCCCC+TGG + chr5.2:42665551-42665570 None:intergenic 65.0%
AGAGGGTCCCCTGGTCCAGC+TGG + chr5.2:42665542-42665561 None:intergenic 70.0%
AGCTGGACCAGGGGACCCTC+TGG - chr5.2:42665541-42665560 MS.gene053971:CDS 70.0%
TCCCCTGGTCCAGCTGGAGG+TGG + chr5.2:42665536-42665555 None:intergenic 70.0%
TCGGTGGCCCCGACACTGGT+AGG + chr5.2:42665573-42665592 None:intergenic 70.0%
! TCACTCGGTGGCCCCGACAC+TGG + chr5.2:42665577-42665596 None:intergenic 70.0%
GGGTCCCCTGGTCCAGCTGG+AGG + chr5.2:42665539-42665558 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 42662885 42667473 42662885 ID=MS.gene053971
chr5.2 mRNA 42662885 42667473 42662885 ID=MS.gene053971.t1;Parent=MS.gene053971
chr5.2 exon 42667420 42667473 42667420 ID=MS.gene053971.t1.exon1;Parent=MS.gene053971.t1
chr5.2 CDS 42667420 42667473 42667420 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42667189 42667314 42667189 ID=MS.gene053971.t1.exon2;Parent=MS.gene053971.t1
chr5.2 CDS 42667189 42667314 42667189 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42666809 42666946 42666809 ID=MS.gene053971.t1.exon3;Parent=MS.gene053971.t1
chr5.2 CDS 42666809 42666946 42666809 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42666424 42666519 42666424 ID=MS.gene053971.t1.exon4;Parent=MS.gene053971.t1
chr5.2 CDS 42666424 42666519 42666424 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42665790 42666032 42665790 ID=MS.gene053971.t1.exon5;Parent=MS.gene053971.t1
chr5.2 CDS 42665790 42666032 42665790 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42665476 42665710 42665476 ID=MS.gene053971.t1.exon6;Parent=MS.gene053971.t1
chr5.2 CDS 42665476 42665710 42665476 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42664476 42664645 42664476 ID=MS.gene053971.t1.exon7;Parent=MS.gene053971.t1
chr5.2 CDS 42664476 42664645 42664476 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42664288 42664365 42664288 ID=MS.gene053971.t1.exon8;Parent=MS.gene053971.t1
chr5.2 CDS 42664288 42664365 42664288 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42664102 42664173 42664102 ID=MS.gene053971.t1.exon9;Parent=MS.gene053971.t1
chr5.2 CDS 42664102 42664173 42664102 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42663917 42664021 42663917 ID=MS.gene053971.t1.exon10;Parent=MS.gene053971.t1
chr5.2 CDS 42663917 42664021 42663917 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42663519 42663611 42663519 ID=MS.gene053971.t1.exon11;Parent=MS.gene053971.t1
chr5.2 CDS 42663519 42663611 42663519 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42663310 42663402 42663310 ID=MS.gene053971.t1.exon12;Parent=MS.gene053971.t1
chr5.2 CDS 42663310 42663402 42663310 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42663029 42663197 42663029 ID=MS.gene053971.t1.exon13;Parent=MS.gene053971.t1
chr5.2 CDS 42663029 42663197 42663029 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
chr5.2 exon 42662885 42662904 42662885 ID=MS.gene053971.t1.exon14;Parent=MS.gene053971.t1
chr5.2 CDS 42662885 42662904 42662885 ID=cds.MS.gene053971.t1;Parent=MS.gene053971.t1
Gene Sequence

>MS.gene053971

ATGTCCAAAGATCTTTATTTCAACCATGATGGTTCAACCACAAAGAAGCTTCTTGTATCATTCATTCTACATTTATTTTTATCTTGACAATTTTAGTTTATATATTTCTTTTCATAAGAAATGATTGAATGAGTGAGTGAATTTTTCTTTGCGGTGTAGGCAGGGGTGGACTTAGTGGCAGAGCTGCTTGGTGTTACATTGGGTCCTAAGGGAAGAAATGTTGTGTTGCACAACAAGTATGGGCCACCCAGGATAGTAAATGATGGAGAAACTGTTCTCAAAGAGGTTTTCTTTCTTTCTTTCTTTCTTTTTCCTTCTTTTTAGTCATTCACCCATAAAATTACCATTTACCACATTCTTATGGTTTAATTAACTTTGAATAGTGTAAATTCTGACGTTATCAAATCACAATTGATTGACTGTACCACAATTGGAGGTGATTTTTCAATATTTAAACACTTGTACCGTTGCTTAGGTGGTTTAATAGGTCTAAGAACATGGTTTTGTGCTGATGTTATTAATTTCAGATTGAATTGGAAGATCCATTGGAGAATGTTGGGGTTAAATTGGTGAGACAAGCTGGTGCAAAAACCAATATCTTAGTTGGTGATGGCTCAACTACATCTGTTGTTCTTGCTCATGGCTTAATCAAAGAGGGAATGAAGGTACATTTAACAAGCCATACATGACTATTCCATCTACTTCTGTTGGAACAATAGCCAAAATTAGTTTAGTGTTCCAACAACTTCAATCAAAATATCATTATTAGATGTTGTTACCATATTTGAAAGTTTTAATGGAAAATTGACATTTATAACAACACTAAAATATCCAAAATATTCCAAAATTGCAAATGAAGTTTGGGAAATATTAGCTTCCATTATATGCTTACGCCACAAATGCTATTGACTTTAGGGGTTTCCTTAAATTTGTGCTCTTTTCATTCTCTTGTAGGTTATTGCAGCTGGAATGAATCCTGTCCAAATTGCTCGTGGGATTGAGAAAACAGCAATAGCACTTGTTACTGAACTTAGTTTGATGTCTAGAGAAGTAAGCTCTACTATCTAGCTGCTGCAGTCACGCATTCACACTGTTATTACATCGCTGGACGTTTGATTCAGATCAGACGGTGCAGAAAACAAGCAAAATTTTTGTGTTTTAAAACTCTGAAATACCGATTTTGAAATATGGAGTGCTTGGTTTTTATCCGACGGTCCATGATGTGTACTCGTGGGGTGAATGTGGGCAAATCCAAATCCATTTTTCTATGATTTTTGTTTACACACTTTGAGATGAATGGCCATTTTTAGAATAGTAATGAAAATTACAATGTTGAATTCTTATCAATGATCTAAAATCTCTTGAATGTTATTCCTATCAATTCTCGCTTGTAGTTGGAAACTCTTGCTGAATTCAGAAACATTGGGGTTTGCATTTGTAGGTTGAGGATCATGAACTTAAATATGTTGCAGAAGTCAGCGCAGGGAACGATTATGTTGTCGGAAACATGATTTCTGAGGCTTTGCATAAAGTAGGAAGAAAAGGAGTAGTGACAATTGAAAAAGGCAAAAGCATTGAGAATAGTCTAGAGATTGTAGAAGGAATGCAATTCGATCGCGGTTATCTGTCTCCCTACTTCGTCACCGATCGAAGAAAGATGACAGTAGATCTTCACAACTGCAAGGTATAACAACTTTAGTTTATTAAAACCCTCACATGAATTCTATAAAATAATTAGGTCGTACATGAATCTTTTGTTGCAGTTGCTTTTAGTTGACAAAAAGATCACAAATCCAAAAGAGCTTCTGAACATATTGAATAGTGCAGTGAAAGAGAAATTTCCAATTTTGATAGTTGCAGAGGGAATTGAGCAGGATGCTCTTGCTCCAATTATTAAAAATAAACTTAGGGGTGTGCTTAAGGTTGCTGCTATTAAGGCTCCTGCTTTTGGGGAACGCAAGAGTCACTACTTAGAAGATATTGCCATCTTGACTGGAGGTATAAGATCAATTAGTCAATTTAATTTAGAAGCTTGTATTTTGTTTGCTGATATTTTGAAATAGCTACTTAGAAGATATTTATAGATAGATGTAGTTACTTAAATTATGTACTTCAATGACCTGTAATTTTGACTTTACATTACAATATGGTTCACTGAGAAGTCAATTTGAGTCGAATTCATTGATACTTACAATTGTGTTTAATCACAAAGATAGCATCAAAATTGGTTGTCAAAACTTTTTCTTTAAAAAAAATTGTATCCACTATGCAAAAACATCACTGCTTGGCGCTAACAAGTCTAGCAATCATTTCCAGCATACGATAATAATTCATTAAAGGAATAAGAAAAGAATACAATTAACCAAAGTCAATTTGTCCGTACAATAATGTTGTTTTCCAAAGATATGATAAAGTTTGAATTGCATGGACGAGACAAGTGTGAGGCAGTTTTTCTGTGATAATTGAGCTTACAACGAACCAAATTTATAGAGGAAAAGGCTTGAACAACTAAAAAAGAATCATATTTCAATCATATATGCTTTGAGCCTCTACTATAAGCCACTTCAATCGATGAGAGAACCAGTGTAATGCCTAAACCAATAACAAAACAACCATGAATCAAACCCTTTCGACCTGTGAAAATCCAACCACCTCCAGCTGGACCAGGGGACCCTCTGGCTTCATCCTACCAGTGTCGGGGCCACCGAGTGAATTGAACAATATGGTAGAATACATGGTGGAAGAAACCATCACTAGCTTTTGATCTTAGTCTTCATTCAATTCATTCTCTACTAATATTTACTCAGTGCATTCTTGGAACTTATCAGGTACTGTAATAAGAGAAGATATGGGTTTCACCTTAGAAAAAGCCAGCACGGATGTGCTTGGTTCTGCTGCCAAAGTTGTCATTACAAAAGATTCTACCCTACTAGTCACTGATGGGAGTACTAGAGAAGCAATTGAAAAGAGGGTTAATCAAATTAAGATCCTTGTTGAGGTACAGAGAAAACCAGATCATTGTATAATATTAGAATGAATTTGATGCATGGTTATTAGTTAACAACATCTGAAAAAGGATTTGCTAAACATCCATTTCGTATTTTGTAGAATACTGAAGAAAATTTTCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTAAGGTAATATAAATTTCAATCATTTTATTTTCATTTTTGGTATCAGGAATTTAAAAAATTCTGTTTTTGTTTATGATGTAGTTCATTTATATTTAAGAACCTGAATCTAAATTATAGGTAGGAGCACAAACACAAGTAGAGTTGAAGGATAAACAATTAAGAATAGAAGATGCCTTAAATGCAACCAAGGTACTTCCTTTTTCTCTGCTTCAATGTGTTTTGAAATCATCGATAGTTCAGTTTCTATATTCTAATTTGTAACATTGCAGGCAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTAGCCTTCTAAGACTATCCAAGAAGGTGGATAGCATAAAAATTCTCCTGGACAATGAAGAGCAAAAGGTAATGTATCTGTTTCATACAATTAAGTTCTGCATCATCATATTTAAAGATATATGAAGCACAATTTATGACACAGACACCACATACGCACTCACTCATAAATCGACATCAGTAACTATTTAGAAAAATGGAAAGATTGAATGAATGTAAGCTCATGTCGGTGTCATGTCATGTCAGTGTCAGAAACCAAACACGTCTTCAATCTGAAGTGACATCTGTTGCAAGCATTCTTTTTGGTTTGTATCCTTTTGTTGGTTTGAATATTTATGTAAATCTTATTCAGTCATTTGTAATGTTATCTGTAGATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAAAATGATAGCGAAAAATGCCGGTGTAAATGGCAATGTTGTCATAGATAAGGTCCTGAGGTTCTTGAGAAACTGTTTTCTGTAAGAGATAAATTATTCAATGAGATTTTTTGGATCTTTTGTTGCATTTAATAAATTCAACTCAATAGCATATCTTCTGTCGTGCAGGTTTTAGCAGATGATAACATGAATTTTGGTTACAATGCTGCTAGAGACTGTTATGAGGATCTCATGAAGGCTAGAATCATGGATCCAACAAAGGTATACTAAATATTTAAATGCCTCACAGAAGATATAAGTAAAAATAATTAGTATAATTTTTAGAAACAAACGTAGTATACTATTGTATTATGTATGTTGAAAATTGGTGCAGGTTGTTAGGTGTTGTATAGAGCATGCAGCTTCTGTGGCAAAGACATTTCTAACATCAAATGCTGTTGTGATTGACCGCATGGAACTAGAACAACCATTACAACGTAGAAAGCCCATGGCTATGCCTAGAAAGCCCATGGCTATGCCTAGAATGCCCATGACTAATTCAGGTATTAGAGTGGGTAGTCATTTAAAAAATGTTTTATATATTACAATTGGCGCTAAAATAACAAGACGACGACAAAACAACAACAAAAAATGCCTTTTATATTACTAAACTTTTGACCCGTGCAGTGCACGGGTCAATTAGATAA

Protein sequence

>MS.gene053971.t1

MSKDLYFNHDGSTTKKLLAGVDLVAELLGVTLGPKGRNVVLHNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNILVGDGSTTSVVLAHGLIKEGMKVIAAGMNPVQIARGIEKTAIALVTELSLMSREVEDHELKYVAEVSAGNDYVVGNMISEALHKVGRKGVVTIEKGKSIENSLEIVEGMQFDRGYLSPYFVTDRRKMTVDLHNCKLLLVDKKITNPKELLNILNSAVKEKFPILIVAEGIEQDALAPIIKNKLRGVLKVAAIKAPAFGERKSHYLEDIAILTGGTVIREDMGFTLEKASTDVLGSAAKVVITKDSTLLVTDGSTREAIEKRVNQIKILVENTEENFQKKILNERIARLSGGIAILKVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKVDSIKILLDNEEQKIGAEIFKRALSYPTKMIAKNAGVNGNVVIDKVLADDNMNFGYNAARDCYEDLMKARIMDPTKVVRCCIEHAASVAKTFLTSNAVVIDRMELEQPLQRRKPMAMPRKPMAMPRMPMTNSVHGSIR