Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32106.t1 | XP_024636266.1 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 1.60E-143 | 518.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32106.t1 | Q6NM73 | 70.5 | 281 | 78 | 2 | 25 | 300 | 27 | 307 | 4.0e-98 | 359.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32106.t1 | G7I3U3 | 98.3 | 298 | 5 | 0 | 1 | 298 | 1 | 298 | 4.9e-142 | 513.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055331 | MS.gene32106 | 0.809397 | 1.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32106.t1 | MTR_1g073320 | 98.658 | 298 | 4 | 0 | 1 | 298 | 1 | 298 | 0.0 | 597 |
| MS.gene32106.t1 | MTR_1g044580 | 69.205 | 302 | 77 | 3 | 1 | 298 | 1 | 290 | 1.67e-141 | 415 |
| MS.gene32106.t1 | MTR_7g098410 | 49.135 | 289 | 130 | 4 | 11 | 298 | 10 | 282 | 1.63e-89 | 268 |
| MS.gene32106.t1 | MTR_1g080350 | 39.130 | 299 | 159 | 8 | 12 | 300 | 10 | 295 | 2.19e-64 | 204 |
| MS.gene32106.t1 | MTR_3g065370 | 30.822 | 292 | 172 | 6 | 6 | 293 | 5 | 270 | 6.95e-34 | 125 |
| MS.gene32106.t1 | MTR_5g078030 | 29.210 | 291 | 186 | 5 | 9 | 297 | 4 | 276 | 2.06e-33 | 124 |
| MS.gene32106.t1 | MTR_8g104990 | 28.727 | 275 | 181 | 5 | 26 | 297 | 18 | 280 | 3.73e-30 | 115 |
| MS.gene32106.t1 | MTR_1g044560 | 43.299 | 97 | 55 | 0 | 144 | 240 | 28 | 124 | 1.47e-18 | 80.5 |
| MS.gene32106.t1 | MTR_7g052020 | 22.835 | 254 | 158 | 4 | 8 | 241 | 4 | 239 | 1.06e-16 | 78.6 |
| MS.gene32106.t1 | MTR_1g104890 | 25.564 | 266 | 171 | 8 | 47 | 296 | 54 | 308 | 2.12e-16 | 78.6 |
| MS.gene32106.t1 | MTR_1g104890 | 25.769 | 260 | 166 | 8 | 47 | 290 | 54 | 302 | 1.00e-15 | 77.8 |
| MS.gene32106.t1 | MTR_1g104890 | 23.920 | 301 | 202 | 8 | 12 | 296 | 19 | 308 | 1.01e-15 | 77.4 |
| MS.gene32106.t1 | MTR_1g104890 | 25.769 | 260 | 166 | 8 | 47 | 290 | 54 | 302 | 1.40e-15 | 77.4 |
| MS.gene32106.t1 | MTR_6g463830 | 24.458 | 323 | 187 | 11 | 1 | 281 | 1 | 308 | 5.01e-15 | 75.9 |
| MS.gene32106.t1 | MTR_1g105615 | 25.101 | 247 | 160 | 9 | 9 | 237 | 11 | 250 | 5.02e-15 | 75.5 |
| MS.gene32106.t1 | MTR_5g005480 | 24.766 | 214 | 146 | 4 | 38 | 237 | 35 | 247 | 3.46e-14 | 73.2 |
| MS.gene32106.t1 | MTR_6g463400 | 23.108 | 251 | 175 | 5 | 1 | 237 | 1 | 247 | 9.91e-14 | 71.6 |
| MS.gene32106.t1 | MTR_6g055960 | 23.462 | 260 | 159 | 5 | 44 | 270 | 33 | 285 | 1.20e-13 | 71.6 |
| MS.gene32106.t1 | MTR_3g064080 | 26.339 | 224 | 152 | 6 | 21 | 234 | 18 | 238 | 1.32e-13 | 71.6 |
| MS.gene32106.t1 | MTR_5g005530 | 23.554 | 242 | 160 | 6 | 68 | 292 | 68 | 301 | 5.43e-13 | 69.7 |
| MS.gene32106.t1 | MTR_1g105650 | 25.974 | 231 | 134 | 7 | 32 | 237 | 33 | 251 | 1.16e-12 | 68.6 |
| MS.gene32106.t1 | MTR_5g068190 | 24.675 | 308 | 207 | 11 | 9 | 299 | 9 | 308 | 1.43e-12 | 68.2 |
| MS.gene32106.t1 | MTR_6g057770 | 26.050 | 238 | 143 | 7 | 23 | 237 | 22 | 249 | 3.32e-12 | 67.4 |
| MS.gene32106.t1 | MTR_6g463710 | 26.050 | 238 | 143 | 7 | 23 | 237 | 22 | 249 | 3.45e-12 | 67.4 |
| MS.gene32106.t1 | MTR_1g105820 | 23.585 | 318 | 177 | 12 | 9 | 287 | 8 | 298 | 4.51e-12 | 67.0 |
| MS.gene32106.t1 | MTR_6g053000 | 25.000 | 240 | 161 | 7 | 11 | 236 | 6 | 240 | 2.77e-11 | 64.3 |
| MS.gene32106.t1 | MTR_3g011910 | 23.843 | 281 | 171 | 10 | 5 | 252 | 10 | 280 | 5.70e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32106.t1 | AT1G04520 | 68.000 | 300 | 87 | 3 | 8 | 300 | 10 | 307 | 1.74e-137 | 391 |
| MS.gene32106.t1 | AT2G33330 | 65.574 | 305 | 99 | 4 | 1 | 300 | 1 | 304 | 1.15e-135 | 386 |
| MS.gene32106.t1 | AT5G43980 | 44.828 | 290 | 134 | 5 | 25 | 299 | 20 | 298 | 1.61e-78 | 241 |
| MS.gene32106.t1 | AT3G04370 | 36.275 | 306 | 153 | 6 | 24 | 299 | 25 | 318 | 5.44e-60 | 194 |
| MS.gene32106.t1 | AT3G04370 | 35.410 | 305 | 156 | 5 | 24 | 299 | 25 | 317 | 8.96e-60 | 193 |
| MS.gene32106.t1 | AT5G37660 | 31.868 | 273 | 163 | 7 | 11 | 279 | 15 | 268 | 1.46e-34 | 127 |
| MS.gene32106.t1 | AT5G37660 | 31.868 | 273 | 163 | 7 | 11 | 279 | 15 | 268 | 1.51e-34 | 127 |
| MS.gene32106.t1 | AT3G60720 | 29.044 | 272 | 165 | 6 | 33 | 296 | 29 | 280 | 1.77e-31 | 119 |
| MS.gene32106.t1 | AT3G60720 | 28.889 | 270 | 164 | 6 | 33 | 294 | 29 | 278 | 1.61e-30 | 116 |
| MS.gene32106.t1 | AT2G01660 | 31.119 | 286 | 174 | 9 | 11 | 289 | 7 | 276 | 6.25e-30 | 115 |
| MS.gene32106.t1 | AT2G01660 | 31.119 | 286 | 174 | 9 | 11 | 289 | 7 | 276 | 6.44e-30 | 115 |
| MS.gene32106.t1 | AT2G01660 | 31.466 | 232 | 141 | 7 | 26 | 250 | 20 | 240 | 8.43e-27 | 105 |
| MS.gene32106.t1 | AT1G70690 | 28.618 | 304 | 185 | 8 | 10 | 299 | 9 | 294 | 3.63e-25 | 102 |
| MS.gene32106.t1 | AT3G60720 | 27.885 | 208 | 139 | 4 | 33 | 233 | 29 | 232 | 6.82e-24 | 97.8 |
| MS.gene32106.t1 | AT5G48540 | 23.041 | 217 | 153 | 5 | 34 | 237 | 24 | 239 | 1.42e-16 | 78.2 |
| MS.gene32106.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 6.59e-15 | 75.5 |
| MS.gene32106.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 6.73e-15 | 75.1 |
| MS.gene32106.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 6.86e-15 | 75.1 |
| MS.gene32106.t1 | AT4G05200 | 23.127 | 307 | 211 | 10 | 12 | 296 | 29 | 332 | 3.87e-13 | 70.1 |
| MS.gene32106.t1 | AT4G05200 | 23.127 | 307 | 211 | 10 | 12 | 296 | 11 | 314 | 4.13e-13 | 70.1 |
| MS.gene32106.t1 | AT5G41290 | 24.468 | 282 | 192 | 6 | 6 | 272 | 5 | 280 | 5.43e-13 | 68.6 |
Find 53 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCAAGAGTTCAGCTTTC+AGG | 0.163538 | 1.2:-55971665 | MS.gene32106:CDS |
| TCTGGTTACTCTTCATCTTT+TGG | 0.217123 | 1.2:-55971251 | MS.gene32106:CDS |
| AGATACCTGTGATGCTATTT+TGG | 0.228242 | 1.2:+55971780 | None:intergenic |
| GAATGTGGAAGTTCTATTTC+AGG | 0.278336 | 1.2:-55971371 | MS.gene32106:CDS |
| AAGACTGTGGCAATAATATT+AGG | 0.324267 | 1.2:-55970744 | MS.gene32106:CDS |
| TATCAATCTTTGTATGTAAT+GGG | 0.324604 | 1.2:-55971467 | MS.gene32106:CDS |
| CCACCCTTTGGAACCCCATT+AGG | 0.332103 | 1.2:+55971305 | None:intergenic |
| GGTGGTGGATCATCCTCTTC+TGG | 0.358061 | 1.2:-55971269 | MS.gene32106:CDS |
| TTATCAATCTTTGTATGTAA+TGG | 0.362171 | 1.2:-55971468 | MS.gene32106:CDS |
| TAGACCAAAGTTGTGTAATC+AGG | 0.371990 | 1.2:+55971932 | None:intergenic |
| AAGATGATGATTTAGAGAAA+TGG | 0.375671 | 1.2:+55971957 | None:intergenic |
| TACATGCTGTATGAGGTTAC+TGG | 0.384385 | 1.2:-55971638 | MS.gene32106:CDS |
| GATTGTGAATATGCACCATT+TGG | 0.394933 | 1.2:+55971878 | None:intergenic |
| AGATGATGATTTAGAGAAAT+GGG | 0.405156 | 1.2:+55971958 | None:intergenic |
| AAGGGTGGTCACTCTTCATC+TGG | 0.416746 | 1.2:-55971290 | MS.gene32106:CDS |
| TTCTCCTGATTACACAACTT+TGG | 0.429549 | 1.2:-55971936 | MS.gene32106:CDS |
| GAAGAACAAAAGAAGAAAGA+GGG | 0.456695 | 1.2:+55971994 | None:intergenic |
| TTCAAAACAACTACTGGTAA+TGG | 0.466752 | 1.2:-55971803 | MS.gene32106:CDS |
| AATGGTGTTGTGAGTAATCA+TGG | 0.467963 | 1.2:-55971506 | MS.gene32106:CDS |
| CATAGTTTGTCTGAGAGAAC+TGG | 0.468018 | 1.2:+55971701 | None:intergenic |
| ACAACAAATGCTGCTGGAAG+AGG | 0.468669 | 1.2:-55971569 | MS.gene32106:CDS |
| GATGAAGAGTGACCACCCTT+TGG | 0.481028 | 1.2:+55971293 | None:intergenic |
| AAGCTGAACTCTTGCAGAGA+TGG | 0.484956 | 1.2:+55971670 | None:intergenic |
| AGGTTGTTACATGCTGTATG+AGG | 0.484965 | 1.2:-55971645 | MS.gene32106:CDS |
| GGTCACTCTTCATCTGGTGG+TGG | 0.489663 | 1.2:-55971284 | MS.gene32106:CDS |
| TGAAGAACAAAAGAAGAAAG+AGG | 0.494984 | 1.2:+55971993 | None:intergenic |
| AGGTTCTTCAAAACAACTAC+TGG | 0.504110 | 1.2:-55971809 | MS.gene32106:CDS |
| TTGTGAGATCTCCTCTGCAT+TGG | 0.514398 | 1.2:+55971756 | None:intergenic |
| AATGGCCAAAATAGCATCAC+AGG | 0.519556 | 1.2:-55971785 | MS.gene32106:CDS |
| GGTCAGTGTGAGGGTGATGT+TGG | 0.522787 | 1.2:-55971446 | MS.gene32106:CDS |
| GCTATGACAGGACAAAATAC+AGG | 0.532912 | 1.2:-55970768 | MS.gene32106:intron |
| ATCTGCATCCCTGAAACTTG+TGG | 0.533086 | 1.2:+55971611 | None:intergenic |
| TTATCCTAATGGGGTTCCAA+AGG | 0.535083 | 1.2:-55971309 | MS.gene32106:CDS |
| GATGTTGGTGATTCTGATTG+TGG | 0.539277 | 1.2:-55971431 | MS.gene32106:CDS |
| TATCCTAATGGGGTTCCAAA+GGG | 0.541401 | 1.2:-55971308 | MS.gene32106:CDS |
| GAAACATTCACAGATCCAAA+TGG | 0.542666 | 1.2:-55971893 | MS.gene32106:CDS |
| TTATATGCTTGCTATTTGCA+AGG | 0.544026 | 1.2:-55970695 | MS.gene32106:CDS |
| TGTGGAACAACAAATGCTGC+TGG | 0.551763 | 1.2:-55971575 | MS.gene32106:CDS |
| AGATGAAGAGTAACCAGAAG+AGG | 0.557396 | 1.2:+55971256 | None:intergenic |
| TACACAACTTTGGTCTACAA+AGG | 0.569043 | 1.2:-55971926 | MS.gene32106:CDS |
| GGTGGTCACTCTTCATCTGG+TGG | 0.573580 | 1.2:-55971287 | MS.gene32106:CDS |
| CAACAAATGCTGCTGGAAGA+GGG | 0.576463 | 1.2:-55971568 | MS.gene32106:CDS |
| GTATGTAATGGGTCAGTGTG+AGG | 0.583972 | 1.2:-55971456 | MS.gene32106:CDS |
| AAGAACAAAAGAAGAAAGAG+GGG | 0.594004 | 1.2:+55971995 | None:intergenic |
| CAAAGAGCTCAAGTTGAATG+TGG | 0.597170 | 1.2:-55971386 | MS.gene32106:CDS |
| TATGTAATGGGTCAGTGTGA+GGG | 0.614570 | 1.2:-55971455 | MS.gene32106:CDS |
| ATTAGGAGGTATAGCTGCTG+TGG | 0.619016 | 1.2:-55970727 | MS.gene32106:CDS |
| CCTAATGGGGTTCCAAAGGG+TGG | 0.628137 | 1.2:-55971305 | MS.gene32106:CDS |
| ACAGGTATCTTCCAATGCAG+AGG | 0.638244 | 1.2:-55971767 | MS.gene32106:CDS |
| ACTGTGGCAATAATATTAGG+AGG | 0.641949 | 1.2:-55970741 | MS.gene32106:CDS |
| AATTTGATGAAGAAACGTGA+TGG | 0.662013 | 1.2:-55970672 | MS.gene32106:intron |
| GTTCTCTCAGACAAACTATG+TGG | 0.667348 | 1.2:-55971698 | MS.gene32106:CDS |
| ACAAAATACAGGAAAGACTG+TGG | 0.709113 | 1.2:-55970757 | MS.gene32106:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTCATACATATTAGTAAA+TGG | + | chr1.2:55971727-55971746 | None:intergenic | 20.0% |
| !! | TATCAATCTTTGTATGTAAT+GGG | - | chr1.2:55971084-55971103 | MS.gene32106:intron | 20.0% |
| !! | TTATAACACATGAACAATTA+AGG | + | chr1.2:55971673-55971692 | None:intergenic | 20.0% |
| !! | TTATCAATCTTTGTATGTAA+TGG | - | chr1.2:55971083-55971102 | MS.gene32106:intron | 20.0% |
| !!! | AGTTTTAGTTATTATCCTAA+TGG | - | chr1.2:55971231-55971250 | MS.gene32106:intron | 20.0% |
| !!! | CAATTTTCTCAAATTATGAT+CGG | + | chr1.2:55971486-55971505 | None:intergenic | 20.0% |
| !!! | GTTTTAGTTATTATCCTAAT+GGG | - | chr1.2:55971232-55971251 | MS.gene32106:intron | 20.0% |
| !!! | TTTTACTTTTATGTTGAATC+TGG | - | chr1.2:55971404-55971423 | MS.gene32106:CDS | 20.0% |
| !!! | TTTTAGTTATTATCCTAATG+GGG | - | chr1.2:55971233-55971252 | MS.gene32106:intron | 20.0% |
| ! | AAGATGATGATTTAGAGAAA+TGG | + | chr1.2:55970597-55970616 | None:intergenic | 25.0% |
| ! | AGATGATGATTTAGAGAAAT+GGG | + | chr1.2:55970596-55970615 | None:intergenic | 25.0% |
| ! | TCAGAATCAATAGATAAGAT+TGG | - | chr1.2:55971347-55971366 | MS.gene32106:CDS | 25.0% |
| !!! | ATAAGATTGGTTTCAATTCT+GGG | - | chr1.2:55971360-55971379 | MS.gene32106:CDS | 25.0% |
| !!! | TATCTATTGATTCTGAATGA+TGG | + | chr1.2:55971343-55971362 | None:intergenic | 25.0% |
| !!! | TTGTACATGGTTTTACTATA+TGG | - | chr1.2:55971913-55971932 | MS.gene32106:CDS | 25.0% |
| AAGAACAAAAGAAGAAAGAG+GGG | + | chr1.2:55970559-55970578 | None:intergenic | 30.0% | |
| AAGACTGTGGCAATAATATT+AGG | - | chr1.2:55971807-55971826 | MS.gene32106:CDS | 30.0% | |
| AATTTGATGAAGAAACGTGA+TGG | - | chr1.2:55971879-55971898 | MS.gene32106:CDS | 30.0% | |
| GAAGAACAAAAGAAGAAAGA+GGG | + | chr1.2:55970560-55970579 | None:intergenic | 30.0% | |
| TGAAGAACAAAAGAAGAAAG+AGG | + | chr1.2:55970561-55970580 | None:intergenic | 30.0% | |
| TTCAAAACAACTACTGGTAA+TGG | - | chr1.2:55970748-55970767 | MS.gene32106:CDS | 30.0% | |
| TTTCACAATCCACAAAAACA+AGG | - | chr1.2:55970722-55970741 | MS.gene32106:CDS | 30.0% | |
| ! | ATTAATCATTGAGTTGTGTG+TGG | - | chr1.2:55971751-55971770 | MS.gene32106:CDS | 30.0% |
| !! | GATAAGATTGGTTTCAATTC+TGG | - | chr1.2:55971359-55971378 | MS.gene32106:CDS | 30.0% |
| !! | TTATATGCTTGCTATTTGCA+AGG | - | chr1.2:55971856-55971875 | MS.gene32106:CDS | 30.0% |
| !! | TTTTGTGGATTGTGAAACTA+AGG | + | chr1.2:55970719-55970738 | None:intergenic | 30.0% |
| !!! | TTTGAAGAACCTTGTTTTTG+TGG | + | chr1.2:55970734-55970753 | None:intergenic | 30.0% |
| ACAAAATACAGGAAAGACTG+TGG | - | chr1.2:55971794-55971813 | MS.gene32106:CDS | 35.0% | |
| ACCTTAACACTTCAGATTGA+AGG | + | chr1.2:55971599-55971618 | None:intergenic | 35.0% | |
| ACTGTGGCAATAATATTAGG+AGG | - | chr1.2:55971810-55971829 | MS.gene32106:CDS | 35.0% | |
| AGGTTCTTCAAAACAACTAC+TGG | - | chr1.2:55970742-55970761 | MS.gene32106:CDS | 35.0% | |
| GAAACATTCACAGATCCAAA+TGG | - | chr1.2:55970658-55970677 | MS.gene32106:intron | 35.0% | |
| GAAGTAGCTCAATTTAGCAA+TGG | - | chr1.2:55971637-55971656 | MS.gene32106:CDS | 35.0% | |
| GAATGTGGAAGTTCTATTTC+AGG | - | chr1.2:55971180-55971199 | MS.gene32106:intron | 35.0% | |
| GATTGTGAATATGCACCATT+TGG | + | chr1.2:55970676-55970695 | None:intergenic | 35.0% | |
| TACACAACTTTGGTCTACAA+AGG | - | chr1.2:55970625-55970644 | MS.gene32106:intron | 35.0% | |
| TAGACCAAAGTTGTGTAATC+AGG | + | chr1.2:55970622-55970641 | None:intergenic | 35.0% | |
| TTCTCCTGATTACACAACTT+TGG | - | chr1.2:55970615-55970634 | MS.gene32106:intron | 35.0% | |
| ! | ACCTTCAATCTGAAGTGTTA+AGG | - | chr1.2:55971595-55971614 | MS.gene32106:CDS | 35.0% |
| ! | CAATCTCTTTCAGCACTTTT+TGG | - | chr1.2:55970691-55970710 | MS.gene32106:CDS | 35.0% |
| ! | TCTGGTTACTCTTCATCTTT+TGG | - | chr1.2:55971300-55971319 | MS.gene32106:CDS | 35.0% |
| !! | AATGGTGTTGTGAGTAATCA+TGG | - | chr1.2:55971045-55971064 | MS.gene32106:intron | 35.0% |
| !! | AGATACCTGTGATGCTATTT+TGG | + | chr1.2:55970774-55970793 | None:intergenic | 35.0% |
| !! | ATCGGTGTCAATGTTATGTT+AGG | + | chr1.2:55971468-55971487 | None:intergenic | 35.0% |
| !! | CAGATTCTTTTCAAGACATG+TGG | - | chr1.2:55970958-55970977 | MS.gene32106:intron | 35.0% |
| !! | GCTTTTTCTGTGATGGAAAA+TGG | - | chr1.2:55971027-55971046 | MS.gene32106:intron | 35.0% |
| !!! | AGAAGAAAGAGGGGTTTTTT+TGG | + | chr1.2:55970550-55970569 | None:intergenic | 35.0% |
| AATGGCCAAAATAGCATCAC+AGG | - | chr1.2:55970766-55970785 | MS.gene32106:intron | 40.0% | |
| AGATGAAGAGTAACCAGAAG+AGG | + | chr1.2:55971298-55971317 | None:intergenic | 40.0% | |
| AGGTTGTTACATGCTGTATG+AGG | - | chr1.2:55970906-55970925 | MS.gene32106:intron | 40.0% | |
| GCTATGACAGGACAAAATAC+AGG | - | chr1.2:55971783-55971802 | MS.gene32106:CDS | 40.0% | |
| GTTCTCTCAGACAAACTATG+TGG | - | chr1.2:55970853-55970872 | MS.gene32106:intron | 40.0% | |
| TACATGCTGTATGAGGTTAC+TGG | - | chr1.2:55970913-55970932 | MS.gene32106:intron | 40.0% | |
| TATCCTAATGGGGTTCCAAA+GGG | - | chr1.2:55971243-55971262 | MS.gene32106:intron | 40.0% | |
| TGATGAAGAAACGTGATGGT+AGG | - | chr1.2:55971883-55971902 | MS.gene32106:CDS | 40.0% | |
| TGGCTAAATGATGCTATGAC+AGG | - | chr1.2:55971771-55971790 | MS.gene32106:CDS | 40.0% | |
| TTATCCTAATGGGGTTCCAA+AGG | - | chr1.2:55971242-55971261 | MS.gene32106:intron | 40.0% | |
| ! | CATAGTTTGTCTGAGAGAAC+TGG | + | chr1.2:55970853-55970872 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAGGTGTGTT+CGG | + | chr1.2:55971590-55971609 | None:intergenic | 40.0% |
| ! | GGTTACTCTTCATCTTTTGG+TGG | - | chr1.2:55971303-55971322 | MS.gene32106:CDS | 40.0% |
| ! | GTCAAGTTGTTGTGTTGTGT+AGG | - | chr1.2:55971532-55971551 | MS.gene32106:CDS | 40.0% |
| !! | CAAAGAGCTCAAGTTGAATG+TGG | - | chr1.2:55971165-55971184 | MS.gene32106:intron | 40.0% |
| !! | CTGGTTTTCCACAAGTTTCA+GGG | - | chr1.2:55970932-55970951 | MS.gene32106:intron | 40.0% |
| !! | GATGTTGGTGATTCTGATTG+TGG | - | chr1.2:55971120-55971139 | MS.gene32106:intron | 40.0% |
| !! | TATGTAATGGGTCAGTGTGA+GGG | - | chr1.2:55971096-55971115 | MS.gene32106:intron | 40.0% |
| !!! | ACTGGTTTTCCACAAGTTTC+AGG | - | chr1.2:55970931-55970950 | MS.gene32106:intron | 40.0% |
| !!! | AGACACTGCTTTTTCTGTGA+TGG | - | chr1.2:55971020-55971039 | MS.gene32106:intron | 40.0% |
| AAGCTGAACTCTTGCAGAGA+TGG | + | chr1.2:55970884-55970903 | None:intergenic | 45.0% | |
| ACAACAAATGCTGCTGGAAG+AGG | - | chr1.2:55970982-55971001 | MS.gene32106:intron | 45.0% | |
| ACAGGTATCTTCCAATGCAG+AGG | - | chr1.2:55970784-55970803 | MS.gene32106:intron | 45.0% | |
| ATCTGCATCCCTGAAACTTG+TGG | + | chr1.2:55970943-55970962 | None:intergenic | 45.0% | |
| CAACAAATGCTGCTGGAAGA+GGG | - | chr1.2:55970983-55971002 | MS.gene32106:intron | 45.0% | |
| CAACTTGACAGTGATGCATG+TGG | + | chr1.2:55971521-55971540 | None:intergenic | 45.0% | |
| TCTGCAAGAGTTCAGCTTTC+AGG | - | chr1.2:55970886-55970905 | MS.gene32106:intron | 45.0% | |
| TGTGGAACAACAAATGCTGC+TGG | - | chr1.2:55970976-55970995 | MS.gene32106:intron | 45.0% | |
| TTGTGAGATCTCCTCTGCAT+TGG | + | chr1.2:55970798-55970817 | None:intergenic | 45.0% | |
| ! | ATTAGGAGGTATAGCTGCTG+TGG | - | chr1.2:55971824-55971843 | MS.gene32106:CDS | 45.0% |
| ! | GGTAGGTGTTGTGTTGTACA+TGG | - | chr1.2:55971900-55971919 | MS.gene32106:CDS | 45.0% |
| ! | TATAGCTGCTGTGGCGTTTT+TGG | - | chr1.2:55971833-55971852 | MS.gene32106:CDS | 45.0% |
| !! | GTATGTAATGGGTCAGTGTG+AGG | - | chr1.2:55971095-55971114 | MS.gene32106:intron | 45.0% |
| AAGGGTGGTCACTCTTCATC+TGG | - | chr1.2:55971261-55971280 | MS.gene32106:CDS | 50.0% | |
| GATGAAGAGTGACCACCCTT+TGG | + | chr1.2:55971261-55971280 | None:intergenic | 50.0% | |
| TGCATGTATCCGACAAGCGT+TGG | + | chr1.2:55971567-55971586 | None:intergenic | 50.0% | |
| TGTCTGACACCAACGCTTGT+CGG | - | chr1.2:55971555-55971574 | MS.gene32106:CDS | 50.0% | |
| CCTAATGGGGTTCCAAAGGG+TGG | - | chr1.2:55971246-55971265 | MS.gene32106:intron | 55.0% | |
| GGTCACTCTTCATCTGGTGG+TGG | - | chr1.2:55971267-55971286 | MS.gene32106:CDS | 55.0% | |
| GGTCAGTGTGAGGGTGATGT+TGG | - | chr1.2:55971105-55971124 | MS.gene32106:intron | 55.0% | |
| GGTGGTCACTCTTCATCTGG+TGG | - | chr1.2:55971264-55971283 | MS.gene32106:CDS | 55.0% | |
| !! | CCACCCTTTGGAACCCCATT+AGG | + | chr1.2:55971249-55971268 | None:intergenic | 55.0% |
| !! | GGTGGTGGATCATCCTCTTC+TGG | - | chr1.2:55971282-55971301 | MS.gene32106:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 55970538 | 55972035 | 55970538 | ID=MS.gene32106 |
| chr1.2 | mRNA | 55970538 | 55972035 | 55970538 | ID=MS.gene32106.t1;Parent=MS.gene32106 |
| chr1.2 | exon | 55971249 | 55972035 | 55971249 | ID=MS.gene32106.t1.exon1;Parent=MS.gene32106.t1 |
| chr1.2 | CDS | 55971249 | 55972035 | 55971249 | ID=cds.MS.gene32106.t1;Parent=MS.gene32106.t1 |
| chr1.2 | exon | 55970673 | 55970780 | 55970673 | ID=MS.gene32106.t1.exon2;Parent=MS.gene32106.t1 |
| chr1.2 | CDS | 55970673 | 55970780 | 55970673 | ID=cds.MS.gene32106.t1;Parent=MS.gene32106.t1 |
| chr1.2 | exon | 55970538 | 55970545 | 55970538 | ID=MS.gene32106.t1.exon3;Parent=MS.gene32106.t1 |
| chr1.2 | CDS | 55970538 | 55970545 | 55970538 | ID=cds.MS.gene32106.t1;Parent=MS.gene32106.t1 |
| Gene Sequence |
| Protein sequence |
