Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32108.t1 | XP_024636279.1 | 94.8 | 611 | 30 | 1 | 1 | 611 | 1 | 609 | 0.00E+00 | 1160.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32108.t1 | A0A072VKV6 | 94.8 | 611 | 30 | 1 | 1 | 611 | 1 | 609 | 0.0e+00 | 1160.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055327 | MS.gene32108 | 0.932943 | 3.98E-95 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32108.t1 | MTR_1g073360 | 94.763 | 611 | 30 | 1 | 1 | 611 | 1 | 609 | 0.0 | 1162 |
| MS.gene32108.t1 | MTR_1g073360 | 89.198 | 611 | 29 | 2 | 1 | 611 | 1 | 574 | 0.0 | 1073 |
| MS.gene32108.t1 | MTR_1g073460 | 71.084 | 83 | 23 | 1 | 276 | 358 | 6 | 87 | 1.70e-31 | 118 |
| MS.gene32108.t1 | MTR_1g045110 | 51.786 | 112 | 44 | 3 | 404 | 512 | 6 | 110 | 5.57e-29 | 112 |
| MS.gene32108.t1 | MTR_4g064997 | 32.778 | 180 | 99 | 6 | 422 | 600 | 665 | 823 | 1.11e-20 | 97.1 |
| MS.gene32108.t1 | MTR_4g019900 | 36.441 | 118 | 72 | 2 | 481 | 598 | 765 | 879 | 6.13e-19 | 91.7 |
| MS.gene32108.t1 | MTR_8g098260 | 30.053 | 376 | 210 | 16 | 258 | 604 | 891 | 1242 | 2.78e-18 | 89.7 |
| MS.gene32108.t1 | MTR_5g010160 | 29.565 | 345 | 169 | 10 | 266 | 596 | 269 | 553 | 5.46e-18 | 88.2 |
| MS.gene32108.t1 | MTR_2g097850 | 34.848 | 132 | 80 | 3 | 482 | 610 | 755 | 883 | 1.51e-17 | 87.4 |
| MS.gene32108.t1 | MTR_7g065880 | 36.290 | 124 | 68 | 3 | 473 | 595 | 688 | 801 | 7.45e-17 | 85.1 |
| MS.gene32108.t1 | MTR_7g065880 | 55.357 | 56 | 23 | 1 | 473 | 528 | 688 | 741 | 8.68e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32108.t1 | AT2G33360 | 35.836 | 586 | 296 | 17 | 62 | 609 | 56 | 599 | 2.92e-94 | 302 |
| MS.gene32108.t1 | AT2G33360 | 41.848 | 368 | 170 | 12 | 264 | 609 | 99 | 444 | 4.85e-82 | 265 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.16e-56 | 196 |
| MS.gene32108.t1 | AT1G04490 | 34.494 | 316 | 148 | 12 | 225 | 529 | 67 | 334 | 7.48e-43 | 158 |
| MS.gene32108.t1 | AT1G63520 | 27.746 | 346 | 172 | 11 | 269 | 593 | 187 | 475 | 1.92e-25 | 110 |
| MS.gene32108.t1 | AT4G11450 | 30.471 | 361 | 192 | 15 | 274 | 596 | 285 | 624 | 1.62e-19 | 93.2 |
| MS.gene32108.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.92e-18 | 90.1 |
| MS.gene32108.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.92e-18 | 90.1 |
| MS.gene32108.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.92e-18 | 90.1 |
| MS.gene32108.t1 | AT2G29510 | 36.296 | 135 | 69 | 5 | 483 | 608 | 667 | 793 | 1.51e-17 | 87.4 |
| MS.gene32108.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 398 | 505 | 2.29e-17 | 85.9 |
| MS.gene32108.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 426 | 533 | 2.39e-17 | 86.3 |
| MS.gene32108.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 426 | 533 | 2.39e-17 | 86.3 |
| MS.gene32108.t1 | AT5G59020 | 36.207 | 116 | 70 | 3 | 481 | 594 | 614 | 727 | 4.05e-15 | 79.3 |
| MS.gene32108.t1 | AT2G37930 | 45.763 | 59 | 32 | 0 | 481 | 539 | 426 | 484 | 2.42e-12 | 70.1 |
Find 118 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGGAAAATGTAAGTTTA+TGG | 0.213081 | 1.2:+56006789 | None:intergenic |
| ACTAGACGGACCACCATTTC+TGG | 0.224898 | 1.2:-56008277 | None:intergenic |
| CTCGAATAGTTGTCGAATAA+TGG | 0.272428 | 1.2:+56007825 | MS.gene32108:CDS |
| CTGGAGAAGAGTGGACTTTA+GGG | 0.278164 | 1.2:+56007254 | MS.gene32108:CDS |
| TGTGATTGAATAGCATTTAC+AGG | 0.279426 | 1.2:-56006953 | None:intergenic |
| TGTCATAAACTTCAAGGTTA+TGG | 0.289180 | 1.2:-56007867 | None:intergenic |
| ACTGGAGAAGAGTGGACTTT+AGG | 0.303131 | 1.2:+56007253 | MS.gene32108:CDS |
| GGTCCATTCCTGTCCATAAA+AGG | 0.312236 | 1.2:+56007497 | MS.gene32108:CDS |
| AGCTAAAGAAGTTGATTAAA+AGG | 0.312940 | 1.2:+56006909 | MS.gene32108:CDS |
| CTGATTCCAGCAGGCCTTCA+TGG | 0.314070 | 1.2:+56008243 | MS.gene32108:CDS |
| TTGCGCAAAATCATAATTAC+TGG | 0.314460 | 1.2:+56007476 | MS.gene32108:CDS |
| TTAAAATTTCTCAACAAATC+TGG | 0.318082 | 1.2:+56008147 | MS.gene32108:CDS |
| AGTGCTTTGCTTAAGAAGTT+TGG | 0.342681 | 1.2:+56007316 | MS.gene32108:CDS |
| TTCAACTTCTACTTTATCTC+AGG | 0.344781 | 1.2:+56007567 | MS.gene32108:CDS |
| AAGACCATCTTCCTTGTAAT+AGG | 0.347092 | 1.2:+56008100 | MS.gene32108:CDS |
| GAACAAGGGGCTAAAGAAAA+AGG | 0.347458 | 1.2:+56007918 | MS.gene32108:CDS |
| GAAAGAGGGCCAATGGAAAA+AGG | 0.347884 | 1.2:+56006817 | MS.gene32108:CDS |
| ACGATATCAGCCCGGCCTTA+AGG | 0.359469 | 1.2:+56008908 | MS.gene32108:CDS |
| GGACCACCATTTCTGGTTCT+AGG | 0.365912 | 1.2:-56008270 | None:intergenic |
| GTTTGGTGATTCAGATAGAA+AGG | 0.384423 | 1.2:+56007333 | MS.gene32108:CDS |
| GACGATGATTTGCCGCTTGT+TGG | 0.385963 | 1.2:+56007769 | MS.gene32108:CDS |
| ATGTGTTGTCATAAACTTCA+AGG | 0.389477 | 1.2:-56007873 | None:intergenic |
| TTCATCGTATAATCTCAAAA+AGG | 0.399342 | 1.2:+56007441 | MS.gene32108:CDS |
| TCTTCGTCGCTGTCTCGAAT+TGG | 0.399996 | 1.2:+56007072 | MS.gene32108:CDS |
| GTAGTTATAAGTTCTGAAAC+TGG | 0.400801 | 1.2:+56007235 | MS.gene32108:CDS |
| GTCACTGCGACTGCGGCGGT+TGG | 0.402601 | 1.2:+56008325 | MS.gene32108:CDS |
| ATGTTAGTGGACTTGACAAT+AGG | 0.404627 | 1.2:+56007014 | MS.gene32108:CDS |
| GACAGCTCTTGTGCACTGTT+TGG | 0.412328 | 1.2:-56009045 | None:intergenic |
| TCACTGCGACTGCGGCGGTT+GGG | 0.423039 | 1.2:+56008326 | MS.gene32108:CDS |
| CTCTCGAAGTTTAACAGATC+TGG | 0.427824 | 1.2:+56007985 | MS.gene32108:CDS |
| TGGTTGACTTGTGCAGTGAT+AGG | 0.427837 | 1.2:+56006846 | MS.gene32108:CDS |
| ATGAACATTTACCATCCTTA+AGG | 0.428993 | 1.2:-56008923 | None:intergenic |
| ATGGAAGCCATCTCAAAATT+CGG | 0.429521 | 1.2:-56008069 | None:intergenic |
| TCTGCGCTCACCATATGCTT+TGG | 0.435520 | 1.2:-56007040 | None:intergenic |
| CTCAACAGATGATAAGGCTT+TGG | 0.437952 | 1.2:+56007690 | MS.gene32108:CDS |
| CGTCTAGTCTGATAGATAGA+TGG | 0.438181 | 1.2:+56008292 | MS.gene32108:CDS |
| CTTTGATTGTCCCTCGGCCA+TGG | 0.438982 | 1.2:+56007201 | MS.gene32108:CDS |
| GGCCCACCATGAAGGCCTGC+TGG | 0.440167 | 1.2:-56008249 | None:intergenic |
| ACGATGATTTGCCGCTTGTT+GGG | 0.444880 | 1.2:+56007770 | MS.gene32108:CDS |
| GCATCTAATAAATCAATTTG+TGG | 0.445579 | 1.2:-56008036 | None:intergenic |
| GTCCCTCGGCCATGGAGACC+AGG | 0.450997 | 1.2:+56007209 | MS.gene32108:CDS |
| TCCCCTGGTCTCCATGGCCG+AGG | 0.451022 | 1.2:-56007212 | None:intergenic |
| CCAGCCTATTACAAGGAAGA+TGG | 0.451504 | 1.2:-56008104 | None:intergenic |
| CTGATAGATAGATGGAGATC+TGG | 0.466242 | 1.2:+56008300 | MS.gene32108:CDS |
| CCATCTTCCTTGTAATAGGC+TGG | 0.466606 | 1.2:+56008104 | MS.gene32108:CDS |
| GTCAGTTGATCTAGTTACTC+AGG | 0.468769 | 1.2:+56008434 | MS.gene32108:CDS |
| TTAAGGATGGTAAATGTTCA+TGG | 0.469525 | 1.2:+56008925 | MS.gene32108:CDS |
| AGTAGACTCAACAGATGATA+AGG | 0.470322 | 1.2:+56007684 | MS.gene32108:CDS |
| CGACTGCGGCGGTTGGGACG+AGG | 0.471254 | 1.2:+56008332 | MS.gene32108:CDS |
| ATAGAAAGGAGAGTTTGAAC+AGG | 0.474728 | 1.2:+56007347 | MS.gene32108:CDS |
| TTATCAGAAAGCTTGAATAC+AGG | 0.482301 | 1.2:+56007166 | MS.gene32108:CDS |
| CAATAGGATTCCAAAGCATA+TGG | 0.482636 | 1.2:+56007030 | MS.gene32108:CDS |
| CCACCTCTACTAGTTCTGAT+TGG | 0.483900 | 1.2:+56007539 | MS.gene32108:CDS |
| TTCCGCAGACGATCAGAAAG+AGG | 0.493042 | 1.2:+56007636 | MS.gene32108:CDS |
| ATATGCAAAGTCCCACTCTT+CGG | 0.496153 | 1.2:+56009022 | MS.gene32108:CDS |
| TTCCAGCAGGCCTTCATGGT+GGG | 0.499228 | 1.2:+56008247 | MS.gene32108:CDS |
| AGGTTTACGTGGCAAAATTG+AGG | 0.509747 | 1.2:+56007656 | MS.gene32108:CDS |
| CATTTACCATCCTTAAGGCC+GGG | 0.512909 | 1.2:-56008918 | None:intergenic |
| TTTGTTGCTCTTAATCTCAA+AGG | 0.513085 | 1.2:-56007133 | None:intergenic |
| AACTACTCCCCTGGTCTCCA+TGG | 0.514088 | 1.2:-56007218 | None:intergenic |
| GGTGGGCCTAGAACCAGAAA+TGG | 0.516565 | 1.2:+56008264 | MS.gene32108:CDS |
| AAGTTTATGGATTCAGAAAG+AGG | 0.520936 | 1.2:+56006802 | MS.gene32108:CDS |
| ACATTTACCATCCTTAAGGC+CGG | 0.521286 | 1.2:-56008919 | None:intergenic |
| AGTAGAGGTGGCGCTAGAAG+TGG | 0.521940 | 1.2:-56007527 | None:intergenic |
| AAAGACTGTAGTGCAGAAAG+AGG | 0.522353 | 1.2:-56008976 | None:intergenic |
| TGCACTGTTTGGCCGAAGAG+TGG | 0.531993 | 1.2:-56009034 | None:intergenic |
| TCTGGTGGTCACTGCGACTG+CGG | 0.536572 | 1.2:+56008318 | MS.gene32108:CDS |
| CCCCTGGTCTCCATGGCCGA+GGG | 0.542474 | 1.2:-56007211 | None:intergenic |
| TGGTTCTAGGCCCACCATGA+AGG | 0.543081 | 1.2:-56008257 | None:intergenic |
| GTGCAGTAAAAGCAACTCAA+TGG | 0.546874 | 1.2:+56007104 | MS.gene32108:CDS |
| ACTGTAGTGCAGAAAGAGGT+TGG | 0.548905 | 1.2:-56008972 | None:intergenic |
| TTGATTACAGCTTTCAGAAG+GGG | 0.558081 | 1.2:-56008187 | None:intergenic |
| GAAGATATACTTAAACCGCT+TGG | 0.559049 | 1.2:-56007421 | None:intergenic |
| TATCAGTTTCACTTAAACAA+GGG | 0.562342 | 1.2:+56007721 | MS.gene32108:CDS |
| GGATTCAGAAAGAGGGCCAA+TGG | 0.563423 | 1.2:+56006810 | MS.gene32108:CDS |
| GGTTGACTTGTGCAGTGATA+GGG | 0.564598 | 1.2:+56006847 | MS.gene32108:CDS |
| ATTCCAGCAGGCCTTCATGG+TGG | 0.566953 | 1.2:+56008246 | MS.gene32108:CDS |
| ACAGCTTTCAGAAGGGGATG+CGG | 0.569558 | 1.2:-56008181 | None:intergenic |
| AAGATGGTCTTTAACAACAA+TGG | 0.573400 | 1.2:-56008088 | None:intergenic |
| ATGAGCATTCTGATTCCAGC+AGG | 0.575520 | 1.2:+56008234 | MS.gene32108:CDS |
| GACTGCGGCGGTTGGGACGA+GGG | 0.575823 | 1.2:+56008333 | MS.gene32108:CDS |
| AGGGAATGATCCAATGTACA+TGG | 0.577871 | 1.2:+56007587 | MS.gene32108:CDS |
| TCAACTTCTACTTTATCTCA+GGG | 0.579262 | 1.2:+56007568 | MS.gene32108:CDS |
| AGAACTTATAACTACTCCCC+TGG | 0.581477 | 1.2:-56007227 | None:intergenic |
| TCCCTCGGCCATGGAGACCA+GGG | 0.582391 | 1.2:+56007210 | MS.gene32108:CDS |
| AAATCAATTTGTGGATCCCA+CGG | 0.593823 | 1.2:-56008027 | None:intergenic |
| GAAAAGATCTAGCATAGTAG+AGG | 0.598200 | 1.2:+56008377 | MS.gene32108:CDS |
| AGTTTATGGATTCAGAAAGA+GGG | 0.606002 | 1.2:+56006803 | MS.gene32108:CDS |
| CTCATCACATGAAGAACAAG+GGG | 0.606607 | 1.2:+56007905 | MS.gene32108:CDS |
| TTTGATTACAGCTTTCAGAA+GGG | 0.607778 | 1.2:-56008188 | None:intergenic |
| GTATCAGTTTCACTTAAACA+AGG | 0.609853 | 1.2:+56007720 | MS.gene32108:CDS |
| CGTAGCTGAGAGTTGTCCGT+GGG | 0.610134 | 1.2:+56008011 | MS.gene32108:CDS |
| TATCAGCCCGGCCTTAAGGA+TGG | 0.610756 | 1.2:+56008912 | MS.gene32108:CDS |
| CCCTCGGCCATGGAGACCAG+GGG | 0.612407 | 1.2:+56007211 | MS.gene32108:CDS |
| ATCCAATGTACATGGAAGCG+AGG | 0.613426 | 1.2:+56007595 | MS.gene32108:CDS |
| GCACTGTTTGGCCGAAGAGT+GGG | 0.617830 | 1.2:-56009033 | None:intergenic |
| ACCCTCGCTTCCATGTACAT+TGG | 0.618074 | 1.2:-56007597 | None:intergenic |
| GGGTTCGAACGATATCAGCC+CGG | 0.623230 | 1.2:+56008900 | MS.gene32108:intron |
| TCCAATGTACATGGAAGCGA+GGG | 0.623512 | 1.2:+56007596 | MS.gene32108:CDS |
| ATAGATAGATGGAGATCTGG+TGG | 0.626756 | 1.2:+56008303 | MS.gene32108:CDS |
| CCAATCAGAACTAGTAGAGG+TGG | 0.627075 | 1.2:-56007539 | None:intergenic |
| GGTGGTCACTGCGACTGCGG+CGG | 0.629032 | 1.2:+56008321 | MS.gene32108:CDS |
| CATCTATCTATCAGACTAGA+CGG | 0.630501 | 1.2:-56008291 | None:intergenic |
| GTGGACTTTAGGGACAGTCA+TGG | 0.630587 | 1.2:+56007264 | MS.gene32108:CDS |
| TTCTCATCACATGAAGAACA+AGG | 0.630955 | 1.2:+56007903 | MS.gene32108:CDS |
| ACAGTCTTTCTCTATAGCTG+TGG | 0.633106 | 1.2:+56008990 | MS.gene32108:CDS |
| CATCCAATCAGAACTAGTAG+AGG | 0.635289 | 1.2:-56007542 | None:intergenic |
| GGGCCTAGAACCAGAAATGG+TGG | 0.641403 | 1.2:+56008267 | MS.gene32108:CDS |
| AACCTCTTTCTGATCGTCTG+CGG | 0.643057 | 1.2:-56007638 | None:intergenic |
| CTGTCTCAAGTAGATACGAA+AGG | 0.644059 | 1.2:+56008402 | MS.gene32108:CDS |
| CGATCAGAAAGAGGTTTACG+TGG | 0.645296 | 1.2:+56007645 | MS.gene32108:CDS |
| GTTATGGAATAATGTGAACT+CGG | 0.647864 | 1.2:-56007851 | None:intergenic |
| CCGTAGCTGAGAGTTGTCCG+TGG | 0.650640 | 1.2:+56008010 | MS.gene32108:CDS |
| CCACGGACAACTCTCAGCTA+CGG | 0.651291 | 1.2:-56008010 | None:intergenic |
| GTTCTGAAACTGGAGAAGAG+TGG | 0.658656 | 1.2:+56007245 | MS.gene32108:CDS |
| TCTCATCACATGAAGAACAA+GGG | 0.672541 | 1.2:+56007904 | MS.gene32108:CDS |
| GAAGCCATCTCAAAATTCGG+AGG | 0.676216 | 1.2:-56008066 | None:intergenic |
| AGGATGGTAAATGTTCATGG+CGG | 0.792410 | 1.2:+56008928 | MS.gene32108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACATTAAAATTAAAATC+TGG | - | chr1.2:56008726-56008745 | None:intergenic | 10.0% |
| !! | AATTACTTTCTATAACTTTC+AGG | + | chr1.2:56008879-56008898 | MS.gene32108:intron | 20.0% |
| !! | ACATTAAAATTAAAATCTGG+TGG | - | chr1.2:56008723-56008742 | None:intergenic | 20.0% |
| !! | ATTACTTTCTATAACTTTCA+GGG | + | chr1.2:56008880-56008899 | MS.gene32108:intron | 20.0% |
| !! | TAATCTCATTATATTATCGT+TGG | + | chr1.2:56008512-56008531 | MS.gene32108:intron | 20.0% |
| !! | TTAAAATTTCTCAACAAATC+TGG | + | chr1.2:56008147-56008166 | MS.gene32108:CDS | 20.0% |
| !!! | ATTGATATGCTATGATTTTA+TGG | + | chr1.2:56007393-56007412 | MS.gene32108:CDS | 20.0% |
| ! | ATGTAGAAAATGTATCATTG+AGG | - | chr1.2:56008618-56008637 | None:intergenic | 25.0% |
| ! | GCATCTAATAAATCAATTTG+TGG | - | chr1.2:56008039-56008058 | None:intergenic | 25.0% |
| ! | TATCAGTTTCACTTAAACAA+GGG | + | chr1.2:56007721-56007740 | MS.gene32108:CDS | 25.0% |
| ! | TTAAAATTAAAATCTGGTGG+TGG | - | chr1.2:56008720-56008739 | None:intergenic | 25.0% |
| ! | TTCATCGTATAATCTCAAAA+AGG | + | chr1.2:56007441-56007460 | MS.gene32108:CDS | 25.0% |
| !! | AATCAGTAAAGTTTTCTTCA+AGG | + | chr1.2:56006976-56006995 | MS.gene32108:CDS | 25.0% |
| !! | AGCTAAAGAAGTTGATTAAA+AGG | + | chr1.2:56006909-56006928 | MS.gene32108:CDS | 25.0% |
| !! | ATCAGTAAAGTTTTCTTCAA+GGG | + | chr1.2:56006977-56006996 | MS.gene32108:CDS | 25.0% |
| !! | TAATTATGATTTTGCGCAAA+CGG | - | chr1.2:56007475-56007494 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGACATGTTAG+TGG | + | chr1.2:56007001-56007020 | MS.gene32108:CDS | 25.0% |
| AAGATGGTCTTTAACAACAA+TGG | - | chr1.2:56008091-56008110 | None:intergenic | 30.0% | |
| AAGTTTATGGATTCAGAAAG+AGG | + | chr1.2:56006802-56006821 | MS.gene32108:CDS | 30.0% | |
| AGTTTATGGATTCAGAAAGA+GGG | + | chr1.2:56006803-56006822 | MS.gene32108:CDS | 30.0% | |
| ATGAACATTTACCATCCTTA+AGG | - | chr1.2:56008926-56008945 | None:intergenic | 30.0% | |
| ATGTGTTGTCATAAACTTCA+AGG | - | chr1.2:56007876-56007895 | None:intergenic | 30.0% | |
| CTATACATAGTAGCGAAAAT+GGG | + | chr1.2:56008663-56008682 | MS.gene32108:intron | 30.0% | |
| CTGTCAAATATAACACATTG+TGG | - | chr1.2:56008756-56008775 | None:intergenic | 30.0% | |
| GTATCAGTTTCACTTAAACA+AGG | + | chr1.2:56007720-56007739 | MS.gene32108:CDS | 30.0% | |
| GTTATGGAATAATGTGAACT+CGG | - | chr1.2:56007854-56007873 | None:intergenic | 30.0% | |
| TCAACTTCTACTTTATCTCA+GGG | + | chr1.2:56007568-56007587 | MS.gene32108:CDS | 30.0% | |
| TCTATACATAGTAGCGAAAA+TGG | + | chr1.2:56008662-56008681 | MS.gene32108:intron | 30.0% | |
| TCTGCGGAAAAAATAAAATG+AGG | - | chr1.2:56007625-56007644 | None:intergenic | 30.0% | |
| TGTAATAGGCTGGAAAAAAT+AGG | + | chr1.2:56008114-56008133 | MS.gene32108:CDS | 30.0% | |
| TGTCATAAACTTCAAGGTTA+TGG | - | chr1.2:56007870-56007889 | None:intergenic | 30.0% | |
| TGTGATTGAATAGCATTTAC+AGG | - | chr1.2:56006956-56006975 | None:intergenic | 30.0% | |
| TTAAGGATGGTAAATGTTCA+TGG | + | chr1.2:56008925-56008944 | MS.gene32108:CDS | 30.0% | |
| TTATATTATCGTTGGATCTG+AGG | + | chr1.2:56008520-56008539 | MS.gene32108:intron | 30.0% | |
| TTATCAGAAAGCTTGAATAC+AGG | + | chr1.2:56007166-56007185 | MS.gene32108:CDS | 30.0% | |
| TTCAACTTCTACTTTATCTC+AGG | + | chr1.2:56007567-56007586 | MS.gene32108:CDS | 30.0% | |
| TTGCGCAAAATCATAATTAC+TGG | + | chr1.2:56007476-56007495 | MS.gene32108:CDS | 30.0% | |
| TTTGATTACAGCTTTCAGAA+GGG | - | chr1.2:56008191-56008210 | None:intergenic | 30.0% | |
| TTTGTTGCTCTTAATCTCAA+AGG | - | chr1.2:56007136-56007155 | None:intergenic | 30.0% | |
| ! | AGAAGCACAATACAAAAGAA+AGG | - | chr1.2:56008595-56008614 | None:intergenic | 30.0% |
| !! | GTAGTTATAAGTTCTGAAAC+TGG | + | chr1.2:56007235-56007254 | MS.gene32108:CDS | 30.0% |
| !! | TTTTGATTACAGCTTTCAGA+AGG | - | chr1.2:56008192-56008211 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCAGCCTATTACA+AGG | - | chr1.2:56008114-56008133 | None:intergenic | 30.0% |
| AAATCAATTTGTGGATCCCA+CGG | - | chr1.2:56008030-56008049 | None:intergenic | 35.0% | |
| AAGACCATCTTCCTTGTAAT+AGG | + | chr1.2:56008100-56008119 | MS.gene32108:CDS | 35.0% | |
| AATAGGCTGGAAAAAATAGG+AGG | + | chr1.2:56008117-56008136 | MS.gene32108:CDS | 35.0% | |
| AGTAGACTCAACAGATGATA+AGG | + | chr1.2:56007684-56007703 | MS.gene32108:CDS | 35.0% | |
| AGTGCTTTGCTTAAGAAGTT+TGG | + | chr1.2:56007316-56007335 | MS.gene32108:CDS | 35.0% | |
| ATAGAAAGGAGAGTTTGAAC+AGG | + | chr1.2:56007347-56007366 | MS.gene32108:CDS | 35.0% | |
| ATGGAAGCCATCTCAAAATT+CGG | - | chr1.2:56008072-56008091 | None:intergenic | 35.0% | |
| CAATAGGATTCCAAAGCATA+TGG | + | chr1.2:56007030-56007049 | MS.gene32108:CDS | 35.0% | |
| CATCTATCTATCAGACTAGA+CGG | - | chr1.2:56008294-56008313 | None:intergenic | 35.0% | |
| CCAATGGAAAAAGGATTCAT+TGG | + | chr1.2:56006826-56006845 | MS.gene32108:CDS | 35.0% | |
| CTCGAATAGTTGTCGAATAA+TGG | + | chr1.2:56007825-56007844 | MS.gene32108:CDS | 35.0% | |
| GAAAAGATCTAGCATAGTAG+AGG | + | chr1.2:56008377-56008396 | MS.gene32108:CDS | 35.0% | |
| GAAGATATACTTAAACCGCT+TGG | - | chr1.2:56007424-56007443 | None:intergenic | 35.0% | |
| TCTCATCACATGAAGAACAA+GGG | + | chr1.2:56007904-56007923 | MS.gene32108:CDS | 35.0% | |
| TTCTCATCACATGAAGAACA+AGG | + | chr1.2:56007903-56007922 | MS.gene32108:CDS | 35.0% | |
| TTGATTACAGCTTTCAGAAG+GGG | - | chr1.2:56008190-56008209 | None:intergenic | 35.0% | |
| ! | ACATTCATTTTCCCAACAAG+CGG | - | chr1.2:56007784-56007803 | None:intergenic | 35.0% |
| ! | ATGAACTTTTCTGATGCTGA+GGG | + | chr1.2:56007370-56007389 | MS.gene32108:CDS | 35.0% |
| ! | CCAATGAATCCTTTTTCCAT+TGG | - | chr1.2:56006829-56006848 | None:intergenic | 35.0% |
| ! | GTTTGGTGATTCAGATAGAA+AGG | + | chr1.2:56007333-56007352 | MS.gene32108:CDS | 35.0% |
| ! | TTTTGTCTTTGATTGTCCCT+CGG | + | chr1.2:56007195-56007214 | MS.gene32108:CDS | 35.0% |
| !! | ATGTTAGTGGACTTGACAAT+AGG | + | chr1.2:56007014-56007033 | MS.gene32108:CDS | 35.0% |
| !!! | AGTGTTCTGTGTTTTGATGA+AGG | - | chr1.2:56007967-56007986 | None:intergenic | 35.0% |
| !!! | ATTGAGTTGCTTTTACTGCA+CGG | - | chr1.2:56007105-56007124 | None:intergenic | 35.0% |
| !!! | CTTTTCTGAAGTACAGTAAG+AGG | - | chr1.2:56008363-56008382 | None:intergenic | 35.0% |
| !!! | TCTGTGTTTTGATGAAGGAT+TGG | - | chr1.2:56007962-56007981 | None:intergenic | 35.0% |
| AAAGACTGTAGTGCAGAAAG+AGG | - | chr1.2:56008979-56008998 | None:intergenic | 40.0% | |
| ACAGTCTTTCTCTATAGCTG+TGG | + | chr1.2:56008990-56009009 | MS.gene32108:CDS | 40.0% | |
| ACATTTACCATCCTTAAGGC+CGG | - | chr1.2:56008922-56008941 | None:intergenic | 40.0% | |
| AGAACTTATAACTACTCCCC+TGG | - | chr1.2:56007230-56007249 | None:intergenic | 40.0% | |
| AGGATGGTAAATGTTCATGG+CGG | + | chr1.2:56008928-56008947 | MS.gene32108:CDS | 40.0% | |
| AGGGAATGATCCAATGTACA+TGG | + | chr1.2:56007587-56007606 | MS.gene32108:CDS | 40.0% | |
| AGGTTTACGTGGCAAAATTG+AGG | + | chr1.2:56007656-56007675 | MS.gene32108:CDS | 40.0% | |
| ATAGACCTCCTTCTTTCAGA+AGG | + | chr1.2:56008636-56008655 | MS.gene32108:intron | 40.0% | |
| ATAGATAGATGGAGATCTGG+TGG | + | chr1.2:56008303-56008322 | MS.gene32108:CDS | 40.0% | |
| ATATGCAAAGTCCCACTCTT+CGG | + | chr1.2:56009022-56009041 | MS.gene32108:CDS | 40.0% | |
| CATCCAATCAGAACTAGTAG+AGG | - | chr1.2:56007545-56007564 | None:intergenic | 40.0% | |
| CGTCTAGTCTGATAGATAGA+TGG | + | chr1.2:56008292-56008311 | MS.gene32108:CDS | 40.0% | |
| CTCAACAGATGATAAGGCTT+TGG | + | chr1.2:56007690-56007709 | MS.gene32108:CDS | 40.0% | |
| CTCATCACATGAAGAACAAG+GGG | + | chr1.2:56007905-56007924 | MS.gene32108:CDS | 40.0% | |
| CTCTCGAAGTTTAACAGATC+TGG | + | chr1.2:56007985-56008004 | MS.gene32108:CDS | 40.0% | |
| CTGATAGATAGATGGAGATC+TGG | + | chr1.2:56008300-56008319 | MS.gene32108:CDS | 40.0% | |
| CTGGAAAAAATAGGAGGTTG+GGG | + | chr1.2:56008123-56008142 | MS.gene32108:CDS | 40.0% | |
| CTGTCTCAAGTAGATACGAA+AGG | + | chr1.2:56008402-56008421 | MS.gene32108:CDS | 40.0% | |
| GAACAAGGGGCTAAAGAAAA+AGG | + | chr1.2:56007918-56007937 | MS.gene32108:CDS | 40.0% | |
| GCTGGAAAAAATAGGAGGTT+GGG | + | chr1.2:56008122-56008141 | MS.gene32108:CDS | 40.0% | |
| GTCAGTTGATCTAGTTACTC+AGG | + | chr1.2:56008434-56008453 | MS.gene32108:CDS | 40.0% | |
| GTGCAGTAAAAGCAACTCAA+TGG | + | chr1.2:56007104-56007123 | MS.gene32108:CDS | 40.0% | |
| ! | AAGCCTTTTATGGACAGGAA+TGG | - | chr1.2:56007503-56007522 | None:intergenic | 40.0% |
| ! | AAGTGGAAGCAAGCCTTTTA+TGG | - | chr1.2:56007513-56007532 | None:intergenic | 40.0% |
| ! | ATAGACCACCTTCTGAAAGA+AGG | - | chr1.2:56008647-56008666 | None:intergenic | 40.0% |
| ! | GATGAACTTTTCTGATGCTG+AGG | + | chr1.2:56007369-56007388 | MS.gene32108:CDS | 40.0% |
| ! | GATTTTATGGACTCTCCAAG+CGG | + | chr1.2:56007406-56007425 | MS.gene32108:CDS | 40.0% |
| !! | TGTTCCTCCGAATTTTGAGA+TGG | + | chr1.2:56008062-56008081 | MS.gene32108:CDS | 40.0% |
| AACCTCTTTCTGATCGTCTG+CGG | - | chr1.2:56007641-56007660 | None:intergenic | 45.0% | |
| ACTGTAGTGCAGAAAGAGGT+TGG | - | chr1.2:56008975-56008994 | None:intergenic | 45.0% | |
| ATCCAATGTACATGGAAGCG+AGG | + | chr1.2:56007595-56007614 | MS.gene32108:CDS | 45.0% | |
| ATGAGCATTCTGATTCCAGC+AGG | + | chr1.2:56008234-56008253 | MS.gene32108:CDS | 45.0% | |
| CATTTACCATCCTTAAGGCC+GGG | - | chr1.2:56008921-56008940 | None:intergenic | 45.0% | |
| CCAATCAGAACTAGTAGAGG+TGG | - | chr1.2:56007542-56007561 | None:intergenic | 45.0% | |
| CCAGCCTATTACAAGGAAGA+TGG | - | chr1.2:56008107-56008126 | None:intergenic | 45.0% | |
| CCATCTTCCTTGTAATAGGC+TGG | + | chr1.2:56008104-56008123 | MS.gene32108:CDS | 45.0% | |
| CGATCAGAAAGAGGTTTACG+TGG | + | chr1.2:56007645-56007664 | MS.gene32108:CDS | 45.0% | |
| GAAAGAGGGCCAATGGAAAA+AGG | + | chr1.2:56006817-56006836 | MS.gene32108:CDS | 45.0% | |
| GAAGCCATCTCAAAATTCGG+AGG | - | chr1.2:56008069-56008088 | None:intergenic | 45.0% | |
| GGCTGGAAAAAATAGGAGGT+TGG | + | chr1.2:56008121-56008140 | MS.gene32108:CDS | 45.0% | |
| GGTCCATTCCTGTCCATAAA+AGG | + | chr1.2:56007497-56007516 | MS.gene32108:CDS | 45.0% | |
| TCCAATGTACATGGAAGCGA+GGG | + | chr1.2:56007596-56007615 | MS.gene32108:CDS | 45.0% | |
| ! | ACGATGATTTGCCGCTTGTT+GGG | + | chr1.2:56007770-56007789 | MS.gene32108:CDS | 45.0% |
| ! | ACTGGAGAAGAGTGGACTTT+AGG | + | chr1.2:56007253-56007272 | MS.gene32108:CDS | 45.0% |
| ! | CTGGAGAAGAGTGGACTTTA+GGG | + | chr1.2:56007254-56007273 | MS.gene32108:CDS | 45.0% |
| ! | GAAGCAAGCCTTTTATGGAC+AGG | - | chr1.2:56007508-56007527 | None:intergenic | 45.0% |
| !! | CCACCTCTACTAGTTCTGAT+TGG | + | chr1.2:56007539-56007558 | MS.gene32108:CDS | 45.0% |
| !! | GGTTGACTTGTGCAGTGATA+GGG | + | chr1.2:56006847-56006866 | MS.gene32108:CDS | 45.0% |
| !! | GTTCTGAAACTGGAGAAGAG+TGG | + | chr1.2:56007245-56007264 | MS.gene32108:CDS | 45.0% |
| !! | TGGTTGACTTGTGCAGTGAT+AGG | + | chr1.2:56006846-56006865 | MS.gene32108:CDS | 45.0% |
| ACAGCTTTCAGAAGGGGATG+CGG | - | chr1.2:56008184-56008203 | None:intergenic | 50.0% | |
| ACCCTCGCTTCCATGTACAT+TGG | - | chr1.2:56007600-56007619 | None:intergenic | 50.0% | |
| ACTAGACGGACCACCATTTC+TGG | - | chr1.2:56008280-56008299 | None:intergenic | 50.0% | |
| GACAGCTCTTGTGCACTGTT+TGG | - | chr1.2:56009048-56009067 | None:intergenic | 50.0% | |
| GACCTCCTTCTTTCAGAAGG+TGG | + | chr1.2:56008639-56008658 | MS.gene32108:intron | 50.0% | |
| GGATTCAGAAAGAGGGCCAA+TGG | + | chr1.2:56006810-56006829 | MS.gene32108:CDS | 50.0% | |
| TCTGCGCTCACCATATGCTT+TGG | - | chr1.2:56007043-56007062 | None:intergenic | 50.0% | |
| TCTTCGTCGCTGTCTCGAAT+TGG | + | chr1.2:56007072-56007091 | MS.gene32108:CDS | 50.0% | |
| TTCCGCAGACGATCAGAAAG+AGG | + | chr1.2:56007636-56007655 | MS.gene32108:CDS | 50.0% | |
| ! | GACCACCTTCTGAAAGAAGG+AGG | - | chr1.2:56008644-56008663 | None:intergenic | 50.0% |
| ! | GACGATGATTTGCCGCTTGT+TGG | + | chr1.2:56007769-56007788 | MS.gene32108:CDS | 50.0% |
| ! | GTGGACTTTAGGGACAGTCA+TGG | + | chr1.2:56007264-56007283 | MS.gene32108:CDS | 50.0% |
| !! | GGACCACCATTTCTGGTTCT+AGG | - | chr1.2:56008273-56008292 | None:intergenic | 50.0% |
| AACTACTCCCCTGGTCTCCA+TGG | - | chr1.2:56007221-56007240 | None:intergenic | 55.0% | |
| ACGATATCAGCCCGGCCTTA+AGG | + | chr1.2:56008908-56008927 | MS.gene32108:CDS | 55.0% | |
| AGTAGAGGTGGCGCTAGAAG+TGG | - | chr1.2:56007530-56007549 | None:intergenic | 55.0% | |
| ATTCCAGCAGGCCTTCATGG+TGG | + | chr1.2:56008246-56008265 | MS.gene32108:CDS | 55.0% | |
| CCACGGACAACTCTCAGCTA+CGG | - | chr1.2:56008013-56008032 | None:intergenic | 55.0% | |
| CGTAGCTGAGAGTTGTCCGT+GGG | + | chr1.2:56008011-56008030 | MS.gene32108:CDS | 55.0% | |
| CTGATTCCAGCAGGCCTTCA+TGG | + | chr1.2:56008243-56008262 | MS.gene32108:CDS | 55.0% | |
| CTTTGATTGTCCCTCGGCCA+TGG | + | chr1.2:56007201-56007220 | MS.gene32108:CDS | 55.0% | |
| GCACTGTTTGGCCGAAGAGT+GGG | - | chr1.2:56009036-56009055 | None:intergenic | 55.0% | |
| GGGCCTAGAACCAGAAATGG+TGG | + | chr1.2:56008267-56008286 | MS.gene32108:CDS | 55.0% | |
| GGGTTCGAACGATATCAGCC+CGG | + | chr1.2:56008900-56008919 | MS.gene32108:intron | 55.0% | |
| GGTGGGCCTAGAACCAGAAA+TGG | + | chr1.2:56008264-56008283 | MS.gene32108:CDS | 55.0% | |
| TATCAGCCCGGCCTTAAGGA+TGG | + | chr1.2:56008912-56008931 | MS.gene32108:CDS | 55.0% | |
| TGCACTGTTTGGCCGAAGAG+TGG | - | chr1.2:56009037-56009056 | None:intergenic | 55.0% | |
| TTCCAGCAGGCCTTCATGGT+GGG | + | chr1.2:56008247-56008266 | MS.gene32108:CDS | 55.0% | |
| !! | TGGTTCTAGGCCCACCATGA+AGG | - | chr1.2:56008260-56008279 | None:intergenic | 55.0% |
| CCGTAGCTGAGAGTTGTCCG+TGG | + | chr1.2:56008010-56008029 | MS.gene32108:CDS | 60.0% | |
| TCTGGTGGTCACTGCGACTG+CGG | + | chr1.2:56008318-56008337 | MS.gene32108:CDS | 60.0% | |
| TCACTGCGACTGCGGCGGTT+GGG | + | chr1.2:56008326-56008345 | MS.gene32108:CDS | 65.0% | |
| TCCCTCGGCCATGGAGACCA+GGG | + | chr1.2:56007210-56007229 | MS.gene32108:CDS | 65.0% | |
| CCCCTGGTCTCCATGGCCGA+GGG | - | chr1.2:56007214-56007233 | None:intergenic | 70.0% | |
| CCCTCGGCCATGGAGACCAG+GGG | + | chr1.2:56007211-56007230 | MS.gene32108:CDS | 70.0% | |
| GACTGCGGCGGTTGGGACGA+GGG | + | chr1.2:56008333-56008352 | MS.gene32108:CDS | 70.0% | |
| GGCCCACCATGAAGGCCTGC+TGG | - | chr1.2:56008252-56008271 | None:intergenic | 70.0% | |
| GGTGGTCACTGCGACTGCGG+CGG | + | chr1.2:56008321-56008340 | MS.gene32108:CDS | 70.0% | |
| GTCACTGCGACTGCGGCGGT+TGG | + | chr1.2:56008325-56008344 | MS.gene32108:CDS | 70.0% | |
| GTCCCTCGGCCATGGAGACC+AGG | + | chr1.2:56007209-56007228 | MS.gene32108:CDS | 70.0% | |
| TCCCCTGGTCTCCATGGCCG+AGG | - | chr1.2:56007215-56007234 | None:intergenic | 70.0% | |
| CGACTGCGGCGGTTGGGACG+AGG | + | chr1.2:56008332-56008351 | MS.gene32108:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 56006791 | 56009071 | 56006791 | ID=MS.gene32108 |
| chr1.2 | mRNA | 56006791 | 56009071 | 56006791 | ID=MS.gene32108.t1;Parent=MS.gene32108 |
| chr1.2 | exon | 56006791 | 56008455 | 56006791 | ID=MS.gene32108.t1.exon1;Parent=MS.gene32108.t1 |
| chr1.2 | CDS | 56006791 | 56008455 | 56006791 | ID=cds.MS.gene32108.t1;Parent=MS.gene32108.t1 |
| chr1.2 | exon | 56008901 | 56009071 | 56008901 | ID=MS.gene32108.t1.exon2;Parent=MS.gene32108.t1 |
| chr1.2 | CDS | 56008901 | 56009071 | 56008901 | ID=cds.MS.gene32108.t1;Parent=MS.gene32108.t1 |
| Gene Sequence |
| Protein sequence |
