AlfalfaGEDB | MS.gene055327

M. sativa cultivar XinJiangDaYe / MS.gene055327

KEGG: -
GO: -
PFAM: PF12043.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055327.t1	XP_024636279.1	95.1	611	28	1	1	611	1	609	0.00E+00	1167.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055327.t1	A0A072VKV6	95.1	611	28	1	1	611	1	609	0.0e+00	1167.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050654	MS.gene055327	0.815789	7.72E-52	-1.69E-46
MS.gene051541	MS.gene055327	0.847759	9.43E-60	-1.69E-46
MS.gene054479	MS.gene055327	0.806262	8.96E-50	-1.69E-46
MS.gene054892	MS.gene055327	0.804274	2.34E-49	-1.69E-46
MS.gene054893	MS.gene055327	0.803356	3.63E-49	-1.69E-46
MS.gene055327	MS.gene058081	0.826386	2.79E-54	-1.69E-46
MS.gene055327	MS.gene058429	0.8698	2.36E-66	-1.69E-46
MS.gene055327	MS.gene060435	0.801555	8.52E-49	-1.69E-46
MS.gene055327	MS.gene06052	0.819715	1.00E-52	-1.69E-46
MS.gene055327	MS.gene060785	0.81283	3.48E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055327.t1	MTR_1g073360	95.090	611	28	1	1	611	1	609	0.0	1169
MS.gene055327.t1	MTR_1g073360	89.525	611	27	2	1	611	1	574	0.0	1081
MS.gene055327.t1	MTR_1g073460	72.289	83	22	1	276	358	6	87	3.10e-32	120
MS.gene055327.t1	MTR_1g045110	50.893	112	45	3	404	512	6	110	3.97e-28	109
MS.gene055327.t1	MTR_4g064997	33.333	180	98	6	422	600	665	823	3.34e-21	99.0
MS.gene055327.t1	MTR_4g019900	36.441	118	72	2	481	598	765	879	5.57e-19	92.0
MS.gene055327.t1	MTR_8g098260	30.053	376	210	16	258	604	891	1242	1.08e-17	87.8
MS.gene055327.t1	MTR_5g010160	29.565	345	169	10	266	596	269	553	1.22e-17	87.0
MS.gene055327.t1	MTR_2g097850	34.848	132	80	3	482	610	755	883	1.36e-17	87.4
MS.gene055327.t1	MTR_7g065880	36.290	124	68	3	473	595	688	801	7.51e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055327.t1	AT2G33360	35.788	584	299	17	62	609	56	599	1.17e-93	300
MS.gene055327.t1	AT2G33360	41.530	366	174	11	264	609	99	444	1.21e-81	264
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199
MS.gene055327.t1	AT1G04490	34.527	391	183	14	225	604	67	395	1.12e-57	199

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Find 115 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGTCACTGGAAAA+AGG	0.339942	1.3:+52854203	MS.gene055327:CDS
AAAGACTGTAGTGCAGAAAG+AGG	0.522353	1.3:-52856358	None:intergenic
AAATCAATTTGTGGATCCCA+CGG	0.593823	1.3:-52855413	None:intergenic
AACCTCTTTCTGATCGTCTG+CGG	0.643057	1.3:-52855024	None:intergenic
AACTACTCCCCTGGTCTCCA+TGG	0.514088	1.3:-52854604	None:intergenic
AAGATGGTCTTTAACAACAA+TGG	0.573400	1.3:-52855474	None:intergenic
ACAGCTTTCAGAAGGCGATG+CGG	0.697212	1.3:-52855567	None:intergenic
ACAGTCTTTCTCTATAGCTG+TGG	0.633106	1.3:+52856372	MS.gene055327:CDS
ACATTTACCATCCTTAAGGC+CGG	0.521286	1.3:-52856301	None:intergenic
ACCCTCGCTTCCATGTACAT+TGG	0.618074	1.3:-52854983	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGGTCTTTAACAACAA+TGG	-	chr1.3:52855477-52855496	None:intergenic	30.0%
AGATTAAGAGCAACAAACAT+AGG	+	chr1.3:52854525-52854544	MS.gene055327:CDS	30.0%
ATGAACATTTACCATCCTTA+AGG	-	chr1.3:52856308-52856327	None:intergenic	30.0%
ATGTGTTGTCATAAACTTCA+AGG	-	chr1.3:52855262-52855281	None:intergenic	30.0%
CTGTCAAATATAACACATTG+TGG	-	chr1.3:52856138-52856157	None:intergenic	30.0%
GATTAAGAGCAACAAACATA+GGG	+	chr1.3:52854526-52854545	MS.gene055327:CDS	30.0%
GTATCAGTTTCACTTAAACA+AGG	+	chr1.3:52855106-52855125	MS.gene055327:CDS	30.0%
GTTATGGAATAATGTGAACT+CGG	-	chr1.3:52855240-52855259	None:intergenic	30.0%
TCAACTTCTACTTTATCTCA+GGG	+	chr1.3:52854954-52854973	MS.gene055327:CDS	30.0%
TCTGCGGAAAAAATAAAATG+AGG	-	chr1.3:52855011-52855030	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	52854177	52856453	52854177	ID=MS.gene055327
chr1.3	mRNA	52854177	52856453	52854177	ID=MS.gene055327.t1;Parent=MS.gene055327
chr1.3	exon	52854177	52855841	52854177	ID=MS.gene055327.t1.exon1;Parent=MS.gene055327.t1
chr1.3	CDS	52854177	52855841	52854177	ID=cds.MS.gene055327.t1;Parent=MS.gene055327.t1
chr1.3	exon	52856283	52856453	52856283	ID=MS.gene055327.t1.exon2;Parent=MS.gene055327.t1
chr1.3	CDS	52856283	52856453	52856283	ID=cds.MS.gene055327.t1;Parent=MS.gene055327.t1

Gene Sequence

>MS.gene055327

ATGGAAAATGTAAGTTTATGGATTCAAAAAGAGGGTCACTGGAAAAAGGATTCGTTGGTTGACTTGTGCAGTGATAGGGAAGAATTATCTGCTGAACATGAAGATTCTTCTAAGTCTCAGCTAAAGAAGTTGATTAAAAGGTCAAACTCTCATTCATCAATACCTGTAAATGCTATTCAATCACAAATCAGTAAAGTTTTCTTCAAGGGTTTATTTTTCAGACATGTTAGTGGACTTGACAATAGGATTCCAAAGCATATGGTGAGCGCAGACGAGAAATATCTTCGTCGCTGTCTCGAATTGGTACATGACCGTGCAGTAAAAGCAACTCAATGGAACATACCTTTGAGATTAAGAGCAACAAACATAGGGACTTTATCAGAAAGCTTGAATACAGGTGAATCTTTTGTCTTTGATTGTCCCTCGGCCATGGAGACCAGGGGAGTAGTTATAAGTTCTGAAACTGGAGAAGAGTGGACTTTAGGGACAGTCATGGAGAGCAAGAGTATGATAAATATATTGAATAGTGCTTTGCTTAAGAAGTTTGGTGATTCAGATAGAAAGGAGAGTTTGAACAGGATGAACTTTTCTGATGCTGAGGGATTGATATGCTATGATTTTATGGACTCTCCAAGCGGTTTAAGTATATCTTCATCGTATAATCTCAAAAAGGTAACAACACCGTTTGCGCAAAATCATAATTACGGGTCCATTCCTGTCCATAAAAGGCTTGCTTCCACTTCTAGCGCCACCTCTACTAGTTCTGATTGGATGTCTTCAACTTCTACTTTATCTCAGGGAATGATCCAATGTACATGGAAGCGAGGGTTACCTCATTTTATTTTTTCCGCAGACGATCAGAAAGAGGTTTACGTGGCAAAATTGAGGAAGATAGTAGACTCAACAGATGATAAGGCTTTGGACTATGTGTATCAGTTTCACTTAAACAAGGGAAGTCAAAAGAGTCGTGAGATTGCTGACGATGATTTGCCGCTTGTTGGGAAAATGAATGTATCAACGAGTTTCACTCTTTGCTCGAATAGTTGTCGAATAATGGAGACCGAGTTCACATTATTCCATAACCTTGAAGTTTATGACAACACATCAGAGTATTCTCATCACATGAAGAACAAGGGGCTAAAGAAAAAGGTGTCACAAGTTTTCAGAACCAATCCTTCATCAAAACACAGAACACTCTCGAAGTTTAACAGATCTGGTGCCGTAGCTGAGAGTTGTCCGTGGGATCCACAAATTGATTTATTAGATGCTAATGTTCCTCCGAATTTTGAGATGGCTTCCATTGTTGTTAAAGACCATCTTCCTTGTAATATGCCGGAAAAAATAGGAGGTTGGGGCTTAAAATTTCTCAACAAATCTGGTGTAAATAAAACCGCATCGCCTTCTGAAAGCTGTAATCAAAATAATGATGACTGCTCGTCGAGTATGAGCATTCTGATTCCAGCAGGCCTTCATGGTGGGCCTAGAACCAGAAATGGTGGTCCGTCTAGTCTGATAGATAGATGGAGATCTGGTGGTCACTGCGACTGCGGCGGTTGGGACGAGGGATGTCCTCTTACTGTACTTCAGAAAAGATCTAGCATAGTAGAGGTTCTGTCTCAAGTAGATACGAAAGGCGAGTGCATGTCAGTTGATCTAGTTACTCAGGTTTGTTTATATCTCATATTCTATTACTCTTCTTTATTATGTTTAAACAATGTTAGTAATCTCATTATATCATCGTTGGATCTGAGGCAAAAGAGTATGTGAACAGTAAATAATTGATTTTGCTAAATATGATTTTCCTTTCTTTTGTATTGTGCTTCTCCTCAATGATACATTTTCTACATAGACCTCCTTCTGTCAGAAGGTGGTCTATAGTAGCGAAAATGGGAAATGACTTTGTTCGCTACTAGAGCTGACGACCACCACCAGATTTTAATTTTAATGTAATGACAATTCCACAATGTGTTATATTTGACAGCAATATTTTTTTTACGTTTAAGATGTTTTTATTGTTGTTATATTCTTGACATTCATGCATCTATAGTCTTTTATTTACTTTCTTTGCTTTCTAAATAGTTGACAATTACTTTCTATAACTTTCAGGGTTCGAACGATATCAGCCCGGCCTTAAGGATGGTAAATGTTCATGGCGGTCTATATTATATTCACTTTGACCAACCTCTTTCTGCACTACAGTCTTTCTCTATAGCTGTGGCTATAATTCATATGCAAAGTCCCACTCTTCGGCCAAACAGTGCACAAGAGCTGTCATAG

Protein sequence

>MS.gene055327.t1

MENVSLWIQKEGHWKKDSLVDLCSDREELSAEHEDSSKSQLKKLIKRSNSHSSIPVNAIQSQISKVFFKGLFFRHVSGLDNRIPKHMVSADEKYLRRCLELVHDRAVKATQWNIPLRLRATNIGTLSESLNTGESFVFDCPSAMETRGVVISSETGEEWTLGTVMESKSMINILNSALLKKFGDSDRKESLNRMNFSDAEGLICYDFMDSPSGLSISSSYNLKKVTTPFAQNHNYGSIPVHKRLASTSSATSTSSDWMSSTSTLSQGMIQCTWKRGLPHFIFSADDQKEVYVAKLRKIVDSTDDKALDYVYQFHLNKGSQKSREIADDDLPLVGKMNVSTSFTLCSNSCRIMETEFTLFHNLEVYDNTSEYSHHMKNKGLKKKVSQVFRTNPSSKHRTLSKFNRSGAVAESCPWDPQIDLLDANVPPNFEMASIVVKDHLPCNMPEKIGGWGLKFLNKSGVNKTASPSESCNQNNDDCSSSMSILIPAGLHGGPRTRNGGPSSLIDRWRSGGHCDCGGWDEGCPLTVLQKRSSIVEVLSQVDTKGECMSVDLVTQGSNDISPALRMVNVHGGLYYIHFDQPLSALQSFSIAVAIIHMQSPTLRPNSAQELS