Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055327.t1 | XP_024636279.1 | 95.1 | 611 | 28 | 1 | 1 | 611 | 1 | 609 | 0.00E+00 | 1167.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055327.t1 | A0A072VKV6 | 95.1 | 611 | 28 | 1 | 1 | 611 | 1 | 609 | 0.0e+00 | 1167.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene055327 | 0.815789 | 7.72E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene055327 | 0.847759 | 9.43E-60 | -1.69E-46 |
| MS.gene054479 | MS.gene055327 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene055327 | 0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene055327 | 0.803356 | 3.63E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene058081 | 0.826386 | 2.79E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene058429 | 0.8698 | 2.36E-66 | -1.69E-46 |
| MS.gene055327 | MS.gene060435 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene06052 | 0.819715 | 1.00E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene060785 | 0.81283 | 3.48E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene060850 | 0.809686 | 1.67E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene060851 | 0.812727 | 3.67E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene060852 | 0.809489 | 1.84E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene060932 | 0.821535 | 3.84E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene063524 | 0.805731 | 1.16E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene063772 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene065460 | 0.817176 | 3.78E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene066047 | 0.840767 | 7.13E-58 | -1.69E-46 |
| MS.gene055327 | MS.gene067043 | 0.820453 | 6.81E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene069024 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene069412 | 0.827936 | 1.19E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene069413 | 0.818584 | 1.82E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene069415 | 0.828342 | 9.48E-55 | -1.69E-46 |
| MS.gene055327 | MS.gene070757 | 0.816024 | 6.84E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene070918 | 0.821107 | 4.81E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene07140 | 0.846271 | 2.41E-59 | -1.69E-46 |
| MS.gene055327 | MS.gene071667 | -0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene073387 | 0.802081 | 6.64E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene073400 | 0.820769 | 5.76E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene20554 | 0.81416 | 1.78E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene22705 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene24251 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene25471 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene27006 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene27269 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene28536 | 0.834835 | 2.38E-56 | -1.69E-46 |
| MS.gene055327 | MS.gene29041 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene30368 | 0.814762 | 1.31E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene32071 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene32108 | 0.932943 | 3.98E-95 | -1.69E-46 |
| MS.gene055327 | MS.gene32238 | 0.80946 | 1.87E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene33056 | 0.860555 | 1.90E-63 | -1.69E-46 |
| MS.gene055327 | MS.gene33177 | 0.839337 | 1.68E-57 | -1.69E-46 |
| MS.gene055327 | MS.gene33180 | 0.828339 | 9.50E-55 | -1.69E-46 |
| MS.gene055327 | MS.gene34691 | 0.815304 | 9.90E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene34937 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene36154 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene36289 | 0.833079 | 6.55E-56 | -1.69E-46 |
| MS.gene055327 | MS.gene37917 | 0.824531 | 7.67E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene38998 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene39665 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene40510 | 0.814681 | 1.36E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene41729 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene43381 | 0.804207 | 2.41E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene44407 | -0.8002 | 1.61E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene44621 | 0.832641 | 8.42E-56 | -1.69E-46 |
| MS.gene055327 | MS.gene44701 | 0.83727 | 5.74E-57 | -1.69E-46 |
| MS.gene055327 | MS.gene44967 | 0.813073 | 3.08E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene44969 | 0.81836 | 2.04E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene47695 | 0.809818 | 1.57E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene47707 | 0.800177 | 1.63E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene47967 | 0.810757 | 9.84E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene48530 | 0.822256 | 2.61E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene51611 | 0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene52956 | 0.835513 | 1.61E-56 | -1.69E-46 |
| MS.gene055327 | MS.gene53825 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene54280 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene55767 | -0.81511 | 1.09E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene55778 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene58571 | 0.809662 | 1.69E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene59592 | 0.807331 | 5.33E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene59645 | 0.808599 | 2.86E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene59697 | 0.806114 | 9.63E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene60302 | 0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene61202 | 0.809541 | 1.80E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene62556 | 0.813922 | 2.00E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene62686 | 0.82734 | 1.65E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene65095 | 0.802397 | 5.72E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene68291 | 0.824391 | 8.28E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene68782 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene71496 | 0.803898 | 2.80E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene73078 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene73938 | 0.822231 | 2.65E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene75564 | 0.830402 | 3.00E-55 | -1.69E-46 |
| MS.gene055327 | MS.gene77208 | 0.806263 | 8.96E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene79120 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene79770 | 0.807458 | 5.01E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene80557 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene84345 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene86546 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene87358 | 0.850676 | 1.46E-60 | -1.69E-46 |
| MS.gene055327 | MS.gene87360 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene055327 | MS.gene89104 | 0.823506 | 1.34E-53 | -1.69E-46 |
| MS.gene055327 | MS.gene90604 | 0.807645 | 4.57E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene90809 | 0.806186 | 9.30E-50 | -1.69E-46 |
| MS.gene055327 | MS.gene94111 | 0.841815 | 3.78E-58 | -1.69E-46 |
| MS.gene055327 | MS.gene97459 | 0.804225 | 2.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055327.t1 | MTR_1g073360 | 95.090 | 611 | 28 | 1 | 1 | 611 | 1 | 609 | 0.0 | 1169 |
| MS.gene055327.t1 | MTR_1g073360 | 89.525 | 611 | 27 | 2 | 1 | 611 | 1 | 574 | 0.0 | 1081 |
| MS.gene055327.t1 | MTR_1g073460 | 72.289 | 83 | 22 | 1 | 276 | 358 | 6 | 87 | 3.10e-32 | 120 |
| MS.gene055327.t1 | MTR_1g045110 | 50.893 | 112 | 45 | 3 | 404 | 512 | 6 | 110 | 3.97e-28 | 109 |
| MS.gene055327.t1 | MTR_4g064997 | 33.333 | 180 | 98 | 6 | 422 | 600 | 665 | 823 | 3.34e-21 | 99.0 |
| MS.gene055327.t1 | MTR_4g019900 | 36.441 | 118 | 72 | 2 | 481 | 598 | 765 | 879 | 5.57e-19 | 92.0 |
| MS.gene055327.t1 | MTR_8g098260 | 30.053 | 376 | 210 | 16 | 258 | 604 | 891 | 1242 | 1.08e-17 | 87.8 |
| MS.gene055327.t1 | MTR_5g010160 | 29.565 | 345 | 169 | 10 | 266 | 596 | 269 | 553 | 1.22e-17 | 87.0 |
| MS.gene055327.t1 | MTR_2g097850 | 34.848 | 132 | 80 | 3 | 482 | 610 | 755 | 883 | 1.36e-17 | 87.4 |
| MS.gene055327.t1 | MTR_7g065880 | 36.290 | 124 | 68 | 3 | 473 | 595 | 688 | 801 | 7.51e-17 | 85.1 |
| MS.gene055327.t1 | MTR_7g065880 | 55.357 | 56 | 23 | 1 | 473 | 528 | 688 | 741 | 9.30e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055327.t1 | AT2G33360 | 35.788 | 584 | 299 | 17 | 62 | 609 | 56 | 599 | 1.17e-93 | 300 |
| MS.gene055327.t1 | AT2G33360 | 41.530 | 366 | 174 | 11 | 264 | 609 | 99 | 444 | 1.21e-81 | 264 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.527 | 391 | 183 | 14 | 225 | 604 | 67 | 395 | 1.12e-57 | 199 |
| MS.gene055327.t1 | AT1G04490 | 34.494 | 316 | 148 | 12 | 225 | 529 | 67 | 334 | 7.04e-44 | 160 |
| MS.gene055327.t1 | AT1G63520 | 27.746 | 346 | 172 | 11 | 269 | 593 | 187 | 475 | 7.42e-26 | 112 |
| MS.gene055327.t1 | AT4G11450 | 30.959 | 365 | 185 | 16 | 274 | 596 | 285 | 624 | 1.83e-19 | 93.2 |
| MS.gene055327.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.81e-18 | 90.1 |
| MS.gene055327.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.81e-18 | 90.1 |
| MS.gene055327.t1 | AT5G01030 | 40.708 | 113 | 58 | 3 | 483 | 595 | 615 | 718 | 1.81e-18 | 90.1 |
| MS.gene055327.t1 | AT2G29510 | 36.296 | 135 | 69 | 5 | 483 | 608 | 667 | 793 | 1.46e-17 | 87.4 |
| MS.gene055327.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 398 | 505 | 2.23e-17 | 86.3 |
| MS.gene055327.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 426 | 533 | 2.28e-17 | 86.3 |
| MS.gene055327.t1 | AT2G37930 | 36.134 | 119 | 65 | 2 | 481 | 599 | 426 | 533 | 2.28e-17 | 86.3 |
| MS.gene055327.t1 | AT5G59020 | 36.207 | 116 | 70 | 3 | 481 | 594 | 614 | 727 | 3.59e-15 | 79.7 |
| MS.gene055327.t1 | AT2G37930 | 45.763 | 59 | 32 | 0 | 481 | 539 | 426 | 484 | 2.40e-12 | 70.1 |
Find 115 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGGAAAATGTAAGTTTA+TGG | 0.213081 | 1.3:+52854175 | None:intergenic |
| ACTAGACGGACCACCATTTC+TGG | 0.224898 | 1.3:-52855663 | None:intergenic |
| CTCGAATAGTTGTCGAATAA+TGG | 0.272428 | 1.3:+52855211 | MS.gene055327:CDS |
| CTGGAGAAGAGTGGACTTTA+GGG | 0.278164 | 1.3:+52854640 | MS.gene055327:CDS |
| TGTGATTGAATAGCATTTAC+AGG | 0.279426 | 1.3:-52854339 | None:intergenic |
| TGTCATAAACTTCAAGGTTA+TGG | 0.289180 | 1.3:-52855253 | None:intergenic |
| ACTGGAGAAGAGTGGACTTT+AGG | 0.303131 | 1.3:+52854639 | MS.gene055327:CDS |
| AGCTAAAGAAGTTGATTAAA+AGG | 0.312395 | 1.3:+52854295 | MS.gene055327:CDS |
| CTGATTCCAGCAGGCCTTCA+TGG | 0.314070 | 1.3:+52855629 | MS.gene055327:CDS |
| GGTCCATTCCTGTCCATAAA+AGG | 0.314408 | 1.3:+52854883 | MS.gene055327:CDS |
| TTAAAATTTCTCAACAAATC+TGG | 0.318082 | 1.3:+52855533 | MS.gene055327:CDS |
| AAAAGAGGGTCACTGGAAAA+AGG | 0.339942 | 1.3:+52854203 | MS.gene055327:CDS |
| AGTGCTTTGCTTAAGAAGTT+TGG | 0.342681 | 1.3:+52854702 | MS.gene055327:CDS |
| TTCAACTTCTACTTTATCTC+AGG | 0.344781 | 1.3:+52854953 | MS.gene055327:CDS |
| GAACAAGGGGCTAAAGAAAA+AGG | 0.347458 | 1.3:+52855304 | MS.gene055327:CDS |
| ACGATATCAGCCCGGCCTTA+AGG | 0.359469 | 1.3:+52856290 | MS.gene055327:CDS |
| GGACCACCATTTCTGGTTCT+AGG | 0.365912 | 1.3:-52855656 | None:intergenic |
| GTTTGGTGATTCAGATAGAA+AGG | 0.384423 | 1.3:+52854719 | MS.gene055327:CDS |
| GACGATGATTTGCCGCTTGT+TGG | 0.385963 | 1.3:+52855155 | MS.gene055327:CDS |
| ATGTGTTGTCATAAACTTCA+AGG | 0.389477 | 1.3:-52855259 | None:intergenic |
| TTCATCGTATAATCTCAAAA+AGG | 0.399342 | 1.3:+52854827 | MS.gene055327:CDS |
| TCTTCGTCGCTGTCTCGAAT+TGG | 0.399996 | 1.3:+52854458 | MS.gene055327:CDS |
| GTAGTTATAAGTTCTGAAAC+TGG | 0.400801 | 1.3:+52854621 | MS.gene055327:CDS |
| TTTGCGCAAAATCATAATTA+CGG | 0.401875 | 1.3:+52854861 | MS.gene055327:CDS |
| GTCACTGCGACTGCGGCGGT+TGG | 0.402601 | 1.3:+52855711 | MS.gene055327:CDS |
| ATGTTAGTGGACTTGACAAT+AGG | 0.404627 | 1.3:+52854400 | MS.gene055327:CDS |
| GACAGCTCTTGTGCACTGTT+TGG | 0.412328 | 1.3:-52856427 | None:intergenic |
| TGGTTGACTTGTGCAGTGAT+AGG | 0.412356 | 1.3:+52854232 | MS.gene055327:CDS |
| TTGCGCAAAATCATAATTAC+GGG | 0.420948 | 1.3:+52854862 | MS.gene055327:CDS |
| TCACTGCGACTGCGGCGGTT+GGG | 0.423039 | 1.3:+52855712 | MS.gene055327:CDS |
| CTCTCGAAGTTTAACAGATC+TGG | 0.427824 | 1.3:+52855371 | MS.gene055327:CDS |
| ATGAACATTTACCATCCTTA+AGG | 0.428993 | 1.3:-52856305 | None:intergenic |
| ATGGAAGCCATCTCAAAATT+CGG | 0.429521 | 1.3:-52855455 | None:intergenic |
| TCTGCGCTCACCATATGCTT+TGG | 0.435520 | 1.3:-52854426 | None:intergenic |
| CTCAACAGATGATAAGGCTT+TGG | 0.437952 | 1.3:+52855076 | MS.gene055327:CDS |
| CGTCTAGTCTGATAGATAGA+TGG | 0.438181 | 1.3:+52855678 | MS.gene055327:CDS |
| CTTTGATTGTCCCTCGGCCA+TGG | 0.438982 | 1.3:+52854587 | MS.gene055327:CDS |
| GGCCCACCATGAAGGCCTGC+TGG | 0.440167 | 1.3:-52855635 | None:intergenic |
| ACGATGATTTGCCGCTTGTT+GGG | 0.444880 | 1.3:+52855156 | MS.gene055327:CDS |
| GCATCTAATAAATCAATTTG+TGG | 0.445579 | 1.3:-52855422 | None:intergenic |
| GTCCCTCGGCCATGGAGACC+AGG | 0.450997 | 1.3:+52854595 | MS.gene055327:CDS |
| TCCCCTGGTCTCCATGGCCG+AGG | 0.451022 | 1.3:-52854598 | None:intergenic |
| CCGGCATATTACAAGGAAGA+TGG | 0.453987 | 1.3:-52855490 | None:intergenic |
| CTGATAGATAGATGGAGATC+TGG | 0.466242 | 1.3:+52855686 | MS.gene055327:CDS |
| GTCAGTTGATCTAGTTACTC+AGG | 0.468769 | 1.3:+52855820 | MS.gene055327:CDS |
| TTAAGGATGGTAAATGTTCA+TGG | 0.469525 | 1.3:+52856307 | MS.gene055327:CDS |
| AGTAGACTCAACAGATGATA+AGG | 0.470322 | 1.3:+52855070 | MS.gene055327:CDS |
| CGACTGCGGCGGTTGGGACG+AGG | 0.471254 | 1.3:+52855718 | MS.gene055327:CDS |
| ATAGAAAGGAGAGTTTGAAC+AGG | 0.474728 | 1.3:+52854733 | MS.gene055327:CDS |
| AGATTAAGAGCAACAAACAT+AGG | 0.478624 | 1.3:+52854525 | MS.gene055327:CDS |
| TTATCAGAAAGCTTGAATAC+AGG | 0.482301 | 1.3:+52854552 | MS.gene055327:CDS |
| CAATAGGATTCCAAAGCATA+TGG | 0.482636 | 1.3:+52854416 | MS.gene055327:CDS |
| CCACCTCTACTAGTTCTGAT+TGG | 0.483900 | 1.3:+52854925 | MS.gene055327:CDS |
| TTCCGCAGACGATCAGAAAG+AGG | 0.493042 | 1.3:+52855022 | MS.gene055327:CDS |
| ATATGCAAAGTCCCACTCTT+CGG | 0.496153 | 1.3:+52856404 | MS.gene055327:CDS |
| TTCCAGCAGGCCTTCATGGT+GGG | 0.499228 | 1.3:+52855633 | MS.gene055327:CDS |
| AGGTTTACGTGGCAAAATTG+AGG | 0.509747 | 1.3:+52855042 | MS.gene055327:CDS |
| CATTTACCATCCTTAAGGCC+GGG | 0.512909 | 1.3:-52856300 | None:intergenic |
| TTTGTTGCTCTTAATCTCAA+AGG | 0.513085 | 1.3:-52854519 | None:intergenic |
| AACTACTCCCCTGGTCTCCA+TGG | 0.514088 | 1.3:-52854604 | None:intergenic |
| CCATCTTCCTTGTAATATGC+CGG | 0.516403 | 1.3:+52855490 | MS.gene055327:CDS |
| GGTGGGCCTAGAACCAGAAA+TGG | 0.516565 | 1.3:+52855650 | MS.gene055327:CDS |
| ACATTTACCATCCTTAAGGC+CGG | 0.521286 | 1.3:-52856301 | None:intergenic |
| AGTAGAGGTGGCGCTAGAAG+TGG | 0.521940 | 1.3:-52854913 | None:intergenic |
| AAAGACTGTAGTGCAGAAAG+AGG | 0.522353 | 1.3:-52856358 | None:intergenic |
| TGCACTGTTTGGCCGAAGAG+TGG | 0.531993 | 1.3:-52856416 | None:intergenic |
| TCTGGTGGTCACTGCGACTG+CGG | 0.536572 | 1.3:+52855704 | MS.gene055327:CDS |
| CCCCTGGTCTCCATGGCCGA+GGG | 0.542474 | 1.3:-52854597 | None:intergenic |
| TGGTTCTAGGCCCACCATGA+AGG | 0.543081 | 1.3:-52855643 | None:intergenic |
| GTGCAGTAAAAGCAACTCAA+TGG | 0.546874 | 1.3:+52854490 | MS.gene055327:CDS |
| ACTGTAGTGCAGAAAGAGGT+TGG | 0.548905 | 1.3:-52856354 | None:intergenic |
| GGTTGACTTGTGCAGTGATA+GGG | 0.549117 | 1.3:+52854233 | MS.gene055327:CDS |
| GAAGATATACTTAAACCGCT+TGG | 0.559049 | 1.3:-52854807 | None:intergenic |
| TATCAGTTTCACTTAAACAA+GGG | 0.562342 | 1.3:+52855107 | MS.gene055327:CDS |
| ATTCCAGCAGGCCTTCATGG+TGG | 0.566953 | 1.3:+52855632 | MS.gene055327:CDS |
| AAGATGGTCTTTAACAACAA+TGG | 0.573400 | 1.3:-52855474 | None:intergenic |
| ATGAGCATTCTGATTCCAGC+AGG | 0.575520 | 1.3:+52855620 | MS.gene055327:CDS |
| GACTGCGGCGGTTGGGACGA+GGG | 0.575823 | 1.3:+52855719 | MS.gene055327:CDS |
| AGGGAATGATCCAATGTACA+TGG | 0.577871 | 1.3:+52854973 | MS.gene055327:CDS |
| TCAACTTCTACTTTATCTCA+GGG | 0.579262 | 1.3:+52854954 | MS.gene055327:CDS |
| AGAACTTATAACTACTCCCC+TGG | 0.581477 | 1.3:-52854613 | None:intergenic |
| TCCCTCGGCCATGGAGACCA+GGG | 0.582391 | 1.3:+52854596 | MS.gene055327:CDS |
| GATTAAGAGCAACAAACATA+GGG | 0.591898 | 1.3:+52854526 | MS.gene055327:CDS |
| AAATCAATTTGTGGATCCCA+CGG | 0.593823 | 1.3:-52855413 | None:intergenic |
| GAAAAGATCTAGCATAGTAG+AGG | 0.598200 | 1.3:+52855763 | MS.gene055327:CDS |
| CTCATCACATGAAGAACAAG+GGG | 0.606607 | 1.3:+52855291 | MS.gene055327:CDS |
| GTATCAGTTTCACTTAAACA+AGG | 0.609853 | 1.3:+52855106 | MS.gene055327:CDS |
| CGTAGCTGAGAGTTGTCCGT+GGG | 0.610134 | 1.3:+52855397 | MS.gene055327:CDS |
| TATCAGCCCGGCCTTAAGGA+TGG | 0.610756 | 1.3:+52856294 | MS.gene055327:CDS |
| CCCTCGGCCATGGAGACCAG+GGG | 0.612407 | 1.3:+52854597 | MS.gene055327:CDS |
| ATCCAATGTACATGGAAGCG+AGG | 0.613426 | 1.3:+52854981 | MS.gene055327:CDS |
| GCACTGTTTGGCCGAAGAGT+GGG | 0.617830 | 1.3:-52856415 | None:intergenic |
| ACCCTCGCTTCCATGTACAT+TGG | 0.618074 | 1.3:-52854983 | None:intergenic |
| GGGTTCGAACGATATCAGCC+CGG | 0.623230 | 1.3:+52856282 | MS.gene055327:intron |
| TCCAATGTACATGGAAGCGA+GGG | 0.623512 | 1.3:+52854982 | MS.gene055327:CDS |
| ATAGATAGATGGAGATCTGG+TGG | 0.626756 | 1.3:+52855689 | MS.gene055327:CDS |
| CCAATCAGAACTAGTAGAGG+TGG | 0.627075 | 1.3:-52854925 | None:intergenic |
| GGTGGTCACTGCGACTGCGG+CGG | 0.629032 | 1.3:+52855707 | MS.gene055327:CDS |
| CATCTATCTATCAGACTAGA+CGG | 0.630501 | 1.3:-52855677 | None:intergenic |
| GTGGACTTTAGGGACAGTCA+TGG | 0.630587 | 1.3:+52854650 | MS.gene055327:CDS |
| TTCTCATCACATGAAGAACA+AGG | 0.630955 | 1.3:+52855289 | MS.gene055327:CDS |
| ACAGTCTTTCTCTATAGCTG+TGG | 0.633106 | 1.3:+52856372 | MS.gene055327:CDS |
| CATCCAATCAGAACTAGTAG+AGG | 0.635289 | 1.3:-52854928 | None:intergenic |
| GGGCCTAGAACCAGAAATGG+TGG | 0.641403 | 1.3:+52855653 | MS.gene055327:CDS |
| AACCTCTTTCTGATCGTCTG+CGG | 0.643057 | 1.3:-52855024 | None:intergenic |
| CTGTCTCAAGTAGATACGAA+AGG | 0.644059 | 1.3:+52855788 | MS.gene055327:CDS |
| CGATCAGAAAGAGGTTTACG+TGG | 0.645296 | 1.3:+52855031 | MS.gene055327:CDS |
| GTTATGGAATAATGTGAACT+CGG | 0.647864 | 1.3:-52855237 | None:intergenic |
| CCGTAGCTGAGAGTTGTCCG+TGG | 0.650640 | 1.3:+52855396 | MS.gene055327:CDS |
| CCACGGACAACTCTCAGCTA+CGG | 0.651291 | 1.3:-52855396 | None:intergenic |
| GTTCTGAAACTGGAGAAGAG+TGG | 0.658656 | 1.3:+52854631 | MS.gene055327:CDS |
| TCTCATCACATGAAGAACAA+GGG | 0.672541 | 1.3:+52855290 | MS.gene055327:CDS |
| GAAGCCATCTCAAAATTCGG+AGG | 0.676216 | 1.3:-52855452 | None:intergenic |
| ACAGCTTTCAGAAGGCGATG+CGG | 0.697212 | 1.3:-52855567 | None:intergenic |
| AGGATGGTAAATGTTCATGG+CGG | 0.792410 | 1.3:+52856310 | MS.gene055327:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACATTAAAATTAAAATC+TGG | - | chr1.3:52856108-52856127 | None:intergenic | 10.0% |
| !! | AATTACTTTCTATAACTTTC+AGG | + | chr1.3:52856261-52856280 | MS.gene055327:intron | 20.0% |
| !! | ACATTAAAATTAAAATCTGG+TGG | - | chr1.3:52856105-52856124 | None:intergenic | 20.0% |
| !! | ATTACTTTCTATAACTTTCA+GGG | + | chr1.3:52856262-52856281 | MS.gene055327:intron | 20.0% |
| !! | TTAAAATTTCTCAACAAATC+TGG | + | chr1.3:52855533-52855552 | MS.gene055327:CDS | 20.0% |
| !!! | ATTGATATGCTATGATTTTA+TGG | + | chr1.3:52854779-52854798 | MS.gene055327:CDS | 20.0% |
| ! | AAGTTTATGGATTCAAAAAG+AGG | + | chr1.3:52854188-52854207 | MS.gene055327:CDS | 25.0% |
| ! | AGTTTATGGATTCAAAAAGA+GGG | + | chr1.3:52854189-52854208 | MS.gene055327:CDS | 25.0% |
| ! | ATGTAGAAAATGTATCATTG+AGG | - | chr1.3:52856004-52856023 | None:intergenic | 25.0% |
| ! | GCATCTAATAAATCAATTTG+TGG | - | chr1.3:52855425-52855444 | None:intergenic | 25.0% |
| ! | TAATCTCATTATATCATCGT+TGG | + | chr1.3:52855898-52855917 | MS.gene055327:intron | 25.0% |
| ! | TATCAGTTTCACTTAAACAA+GGG | + | chr1.3:52855107-52855126 | MS.gene055327:CDS | 25.0% |
| ! | TTAAAATTAAAATCTGGTGG+TGG | - | chr1.3:52856102-52856121 | None:intergenic | 25.0% |
| ! | TTCATCGTATAATCTCAAAA+AGG | + | chr1.3:52854827-52854846 | MS.gene055327:CDS | 25.0% |
| ! | TTTGCGCAAAATCATAATTA+CGG | + | chr1.3:52854861-52854880 | MS.gene055327:CDS | 25.0% |
| !! | AATCAGTAAAGTTTTCTTCA+AGG | + | chr1.3:52854362-52854381 | MS.gene055327:CDS | 25.0% |
| !! | AGCTAAAGAAGTTGATTAAA+AGG | + | chr1.3:52854295-52854314 | MS.gene055327:CDS | 25.0% |
| !! | ATCAGTAAAGTTTTCTTCAA+GGG | + | chr1.3:52854363-52854382 | MS.gene055327:CDS | 25.0% |
| !! | TAATTATGATTTTGCGCAAA+CGG | - | chr1.3:52854861-52854880 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGACATGTTAG+TGG | + | chr1.3:52854387-52854406 | MS.gene055327:CDS | 25.0% |
| AAGATGGTCTTTAACAACAA+TGG | - | chr1.3:52855477-52855496 | None:intergenic | 30.0% | |
| AGATTAAGAGCAACAAACAT+AGG | + | chr1.3:52854525-52854544 | MS.gene055327:CDS | 30.0% | |
| ATGAACATTTACCATCCTTA+AGG | - | chr1.3:52856308-52856327 | None:intergenic | 30.0% | |
| ATGTGTTGTCATAAACTTCA+AGG | - | chr1.3:52855262-52855281 | None:intergenic | 30.0% | |
| CTGTCAAATATAACACATTG+TGG | - | chr1.3:52856138-52856157 | None:intergenic | 30.0% | |
| GATTAAGAGCAACAAACATA+GGG | + | chr1.3:52854526-52854545 | MS.gene055327:CDS | 30.0% | |
| GTATCAGTTTCACTTAAACA+AGG | + | chr1.3:52855106-52855125 | MS.gene055327:CDS | 30.0% | |
| GTTATGGAATAATGTGAACT+CGG | - | chr1.3:52855240-52855259 | None:intergenic | 30.0% | |
| TCAACTTCTACTTTATCTCA+GGG | + | chr1.3:52854954-52854973 | MS.gene055327:CDS | 30.0% | |
| TCTGCGGAAAAAATAAAATG+AGG | - | chr1.3:52855011-52855030 | None:intergenic | 30.0% | |
| TGTAATATGCCGGAAAAAAT+AGG | + | chr1.3:52855500-52855519 | MS.gene055327:CDS | 30.0% | |
| TGTCATAAACTTCAAGGTTA+TGG | - | chr1.3:52855256-52855275 | None:intergenic | 30.0% | |
| TGTGATTGAATAGCATTTAC+AGG | - | chr1.3:52854342-52854361 | None:intergenic | 30.0% | |
| TTAAGGATGGTAAATGTTCA+TGG | + | chr1.3:52856307-52856326 | MS.gene055327:CDS | 30.0% | |
| TTATCAGAAAGCTTGAATAC+AGG | + | chr1.3:52854552-52854571 | MS.gene055327:CDS | 30.0% | |
| TTCAACTTCTACTTTATCTC+AGG | + | chr1.3:52854953-52854972 | MS.gene055327:CDS | 30.0% | |
| TTGCGCAAAATCATAATTAC+GGG | + | chr1.3:52854862-52854881 | MS.gene055327:CDS | 30.0% | |
| TTTGTTGCTCTTAATCTCAA+AGG | - | chr1.3:52854522-52854541 | None:intergenic | 30.0% | |
| ! | AGAAGCACAATACAAAAGAA+AGG | - | chr1.3:52855981-52856000 | None:intergenic | 30.0% |
| !! | GTAGTTATAAGTTCTGAAAC+TGG | + | chr1.3:52854621-52854640 | MS.gene055327:CDS | 30.0% |
| !! | TTTTGATTACAGCTTTCAGA+AGG | - | chr1.3:52855578-52855597 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCGGCATATTACA+AGG | - | chr1.3:52855500-52855519 | None:intergenic | 30.0% |
| AAATCAATTTGTGGATCCCA+CGG | - | chr1.3:52855416-52855435 | None:intergenic | 35.0% | |
| AATATGCCGGAAAAAATAGG+AGG | + | chr1.3:52855503-52855522 | MS.gene055327:CDS | 35.0% | |
| AGTAGACTCAACAGATGATA+AGG | + | chr1.3:52855070-52855089 | MS.gene055327:CDS | 35.0% | |
| AGTGCTTTGCTTAAGAAGTT+TGG | + | chr1.3:52854702-52854721 | MS.gene055327:CDS | 35.0% | |
| ATAGAAAGGAGAGTTTGAAC+AGG | + | chr1.3:52854733-52854752 | MS.gene055327:CDS | 35.0% | |
| ATGGAAGCCATCTCAAAATT+CGG | - | chr1.3:52855458-52855477 | None:intergenic | 35.0% | |
| CAATAGGATTCCAAAGCATA+TGG | + | chr1.3:52854416-52854435 | MS.gene055327:CDS | 35.0% | |
| CATCTATCTATCAGACTAGA+CGG | - | chr1.3:52855680-52855699 | None:intergenic | 35.0% | |
| CTCGAATAGTTGTCGAATAA+TGG | + | chr1.3:52855211-52855230 | MS.gene055327:CDS | 35.0% | |
| GAAAAGATCTAGCATAGTAG+AGG | + | chr1.3:52855763-52855782 | MS.gene055327:CDS | 35.0% | |
| GAAGATATACTTAAACCGCT+TGG | - | chr1.3:52854810-52854829 | None:intergenic | 35.0% | |
| TCTCATCACATGAAGAACAA+GGG | + | chr1.3:52855290-52855309 | MS.gene055327:CDS | 35.0% | |
| TGGTCTATAGTAGCGAAAAT+GGG | + | chr1.3:52856045-52856064 | MS.gene055327:intron | 35.0% | |
| TTATATCATCGTTGGATCTG+AGG | + | chr1.3:52855906-52855925 | MS.gene055327:intron | 35.0% | |
| TTCTCATCACATGAAGAACA+AGG | + | chr1.3:52855289-52855308 | MS.gene055327:CDS | 35.0% | |
| ! | ACATTCATTTTCCCAACAAG+CGG | - | chr1.3:52855170-52855189 | None:intergenic | 35.0% |
| ! | ATGAACTTTTCTGATGCTGA+GGG | + | chr1.3:52854756-52854775 | MS.gene055327:CDS | 35.0% |
| ! | GTTTGGTGATTCAGATAGAA+AGG | + | chr1.3:52854719-52854738 | MS.gene055327:CDS | 35.0% |
| ! | TTTTGTCTTTGATTGTCCCT+CGG | + | chr1.3:52854581-52854600 | MS.gene055327:CDS | 35.0% |
| !! | ATGTTAGTGGACTTGACAAT+AGG | + | chr1.3:52854400-52854419 | MS.gene055327:CDS | 35.0% |
| !!! | AGTGTTCTGTGTTTTGATGA+AGG | - | chr1.3:52855353-52855372 | None:intergenic | 35.0% |
| !!! | ATTGAGTTGCTTTTACTGCA+CGG | - | chr1.3:52854491-52854510 | None:intergenic | 35.0% |
| !!! | CTTTTCTGAAGTACAGTAAG+AGG | - | chr1.3:52855749-52855768 | None:intergenic | 35.0% |
| !!! | TCTGTGTTTTGATGAAGGAT+TGG | - | chr1.3:52855348-52855367 | None:intergenic | 35.0% |
| AAAAGAGGGTCACTGGAAAA+AGG | + | chr1.3:52854203-52854222 | MS.gene055327:CDS | 40.0% | |
| AAAGACTGTAGTGCAGAAAG+AGG | - | chr1.3:52856361-52856380 | None:intergenic | 40.0% | |
| ACAGTCTTTCTCTATAGCTG+TGG | + | chr1.3:52856372-52856391 | MS.gene055327:CDS | 40.0% | |
| ACATTTACCATCCTTAAGGC+CGG | - | chr1.3:52856304-52856323 | None:intergenic | 40.0% | |
| AGAACTTATAACTACTCCCC+TGG | - | chr1.3:52854616-52854635 | None:intergenic | 40.0% | |
| AGGATGGTAAATGTTCATGG+CGG | + | chr1.3:52856310-52856329 | MS.gene055327:CDS | 40.0% | |
| AGGGAATGATCCAATGTACA+TGG | + | chr1.3:52854973-52854992 | MS.gene055327:CDS | 40.0% | |
| AGGTTTACGTGGCAAAATTG+AGG | + | chr1.3:52855042-52855061 | MS.gene055327:CDS | 40.0% | |
| ATAGATAGATGGAGATCTGG+TGG | + | chr1.3:52855689-52855708 | MS.gene055327:CDS | 40.0% | |
| ATATGCAAAGTCCCACTCTT+CGG | + | chr1.3:52856404-52856423 | MS.gene055327:CDS | 40.0% | |
| CATCCAATCAGAACTAGTAG+AGG | - | chr1.3:52854931-52854950 | None:intergenic | 40.0% | |
| CCATCTTCCTTGTAATATGC+CGG | + | chr1.3:52855490-52855509 | MS.gene055327:CDS | 40.0% | |
| CGTCTAGTCTGATAGATAGA+TGG | + | chr1.3:52855678-52855697 | MS.gene055327:CDS | 40.0% | |
| CTCAACAGATGATAAGGCTT+TGG | + | chr1.3:52855076-52855095 | MS.gene055327:CDS | 40.0% | |
| CTCATCACATGAAGAACAAG+GGG | + | chr1.3:52855291-52855310 | MS.gene055327:CDS | 40.0% | |
| CTCTCGAAGTTTAACAGATC+TGG | + | chr1.3:52855371-52855390 | MS.gene055327:CDS | 40.0% | |
| CTGATAGATAGATGGAGATC+TGG | + | chr1.3:52855686-52855705 | MS.gene055327:CDS | 40.0% | |
| CTGTCTCAAGTAGATACGAA+AGG | + | chr1.3:52855788-52855807 | MS.gene055327:CDS | 40.0% | |
| GAACAAGGGGCTAAAGAAAA+AGG | + | chr1.3:52855304-52855323 | MS.gene055327:CDS | 40.0% | |
| GTCAGTTGATCTAGTTACTC+AGG | + | chr1.3:52855820-52855839 | MS.gene055327:CDS | 40.0% | |
| GTGCAGTAAAAGCAACTCAA+TGG | + | chr1.3:52854490-52854509 | MS.gene055327:CDS | 40.0% | |
| GTGGTCTATAGTAGCGAAAA+TGG | + | chr1.3:52856044-52856063 | MS.gene055327:intron | 40.0% | |
| TCACTGGAAAAAGGATTCGT+TGG | + | chr1.3:52854212-52854231 | MS.gene055327:CDS | 40.0% | |
| ! | AAGCCTTTTATGGACAGGAA+TGG | - | chr1.3:52854889-52854908 | None:intergenic | 40.0% |
| ! | AAGTGGAAGCAAGCCTTTTA+TGG | - | chr1.3:52854899-52854918 | None:intergenic | 40.0% |
| ! | GATGAACTTTTCTGATGCTG+AGG | + | chr1.3:52854755-52854774 | MS.gene055327:CDS | 40.0% |
| ! | GATTTTATGGACTCTCCAAG+CGG | + | chr1.3:52854792-52854811 | MS.gene055327:CDS | 40.0% |
| !! | TGTTCCTCCGAATTTTGAGA+TGG | + | chr1.3:52855448-52855467 | MS.gene055327:CDS | 40.0% |
| AACCTCTTTCTGATCGTCTG+CGG | - | chr1.3:52855027-52855046 | None:intergenic | 45.0% | |
| ACTGTAGTGCAGAAAGAGGT+TGG | - | chr1.3:52856357-52856376 | None:intergenic | 45.0% | |
| ATAGACCACCTTCTGACAGA+AGG | - | chr1.3:52856033-52856052 | None:intergenic | 45.0% | |
| ATAGACCTCCTTCTGTCAGA+AGG | + | chr1.3:52856022-52856041 | MS.gene055327:intron | 45.0% | |
| ATCCAATGTACATGGAAGCG+AGG | + | chr1.3:52854981-52855000 | MS.gene055327:CDS | 45.0% | |
| ATGAGCATTCTGATTCCAGC+AGG | + | chr1.3:52855620-52855639 | MS.gene055327:CDS | 45.0% | |
| CATTTACCATCCTTAAGGCC+GGG | - | chr1.3:52856303-52856322 | None:intergenic | 45.0% | |
| CCAATCAGAACTAGTAGAGG+TGG | - | chr1.3:52854928-52854947 | None:intergenic | 45.0% | |
| CCGGAAAAAATAGGAGGTTG+GGG | + | chr1.3:52855509-52855528 | MS.gene055327:CDS | 45.0% | |
| CCGGCATATTACAAGGAAGA+TGG | - | chr1.3:52855493-52855512 | None:intergenic | 45.0% | |
| CGATCAGAAAGAGGTTTACG+TGG | + | chr1.3:52855031-52855050 | MS.gene055327:CDS | 45.0% | |
| GAAGCCATCTCAAAATTCGG+AGG | - | chr1.3:52855455-52855474 | None:intergenic | 45.0% | |
| GCCGGAAAAAATAGGAGGTT+GGG | + | chr1.3:52855508-52855527 | MS.gene055327:CDS | 45.0% | |
| GGATTCAAAAAGAGGGTCAC+TGG | + | chr1.3:52854196-52854215 | MS.gene055327:CDS | 45.0% | |
| GGTCCATTCCTGTCCATAAA+AGG | + | chr1.3:52854883-52854902 | MS.gene055327:CDS | 45.0% | |
| TCCAATGTACATGGAAGCGA+GGG | + | chr1.3:52854982-52855001 | MS.gene055327:CDS | 45.0% | |
| TGCCGGAAAAAATAGGAGGT+TGG | + | chr1.3:52855507-52855526 | MS.gene055327:CDS | 45.0% | |
| ! | ACGATGATTTGCCGCTTGTT+GGG | + | chr1.3:52855156-52855175 | MS.gene055327:CDS | 45.0% |
| ! | ACTGGAGAAGAGTGGACTTT+AGG | + | chr1.3:52854639-52854658 | MS.gene055327:CDS | 45.0% |
| ! | CTGGAGAAGAGTGGACTTTA+GGG | + | chr1.3:52854640-52854659 | MS.gene055327:CDS | 45.0% |
| ! | GAAGCAAGCCTTTTATGGAC+AGG | - | chr1.3:52854894-52854913 | None:intergenic | 45.0% |
| !! | CCACCTCTACTAGTTCTGAT+TGG | + | chr1.3:52854925-52854944 | MS.gene055327:CDS | 45.0% |
| !! | GGTTGACTTGTGCAGTGATA+GGG | + | chr1.3:52854233-52854252 | MS.gene055327:CDS | 45.0% |
| !! | GTTCTGAAACTGGAGAAGAG+TGG | + | chr1.3:52854631-52854650 | MS.gene055327:CDS | 45.0% |
| !! | TGGTTGACTTGTGCAGTGAT+AGG | + | chr1.3:52854232-52854251 | MS.gene055327:CDS | 45.0% |
| !!! | CCCCAACCTCCTATTTTTTC+CGG | - | chr1.3:52855512-52855531 | None:intergenic | 45.0% |
| ACAGCTTTCAGAAGGCGATG+CGG | - | chr1.3:52855570-52855589 | None:intergenic | 50.0% | |
| ACCCTCGCTTCCATGTACAT+TGG | - | chr1.3:52854986-52855005 | None:intergenic | 50.0% | |
| ACTAGACGGACCACCATTTC+TGG | - | chr1.3:52855666-52855685 | None:intergenic | 50.0% | |
| GACAGCTCTTGTGCACTGTT+TGG | - | chr1.3:52856430-52856449 | None:intergenic | 50.0% | |
| TCTGCGCTCACCATATGCTT+TGG | - | chr1.3:52854429-52854448 | None:intergenic | 50.0% | |
| TCTTCGTCGCTGTCTCGAAT+TGG | + | chr1.3:52854458-52854477 | MS.gene055327:CDS | 50.0% | |
| TTCCGCAGACGATCAGAAAG+AGG | + | chr1.3:52855022-52855041 | MS.gene055327:CDS | 50.0% | |
| ! | GACGATGATTTGCCGCTTGT+TGG | + | chr1.3:52855155-52855174 | MS.gene055327:CDS | 50.0% |
| ! | GTGGACTTTAGGGACAGTCA+TGG | + | chr1.3:52854650-52854669 | MS.gene055327:CDS | 50.0% |
| !! | GGACCACCATTTCTGGTTCT+AGG | - | chr1.3:52855659-52855678 | None:intergenic | 50.0% |
| AACTACTCCCCTGGTCTCCA+TGG | - | chr1.3:52854607-52854626 | None:intergenic | 55.0% | |
| ACGATATCAGCCCGGCCTTA+AGG | + | chr1.3:52856290-52856309 | MS.gene055327:CDS | 55.0% | |
| AGTAGAGGTGGCGCTAGAAG+TGG | - | chr1.3:52854916-52854935 | None:intergenic | 55.0% | |
| ATTCCAGCAGGCCTTCATGG+TGG | + | chr1.3:52855632-52855651 | MS.gene055327:CDS | 55.0% | |
| CCACGGACAACTCTCAGCTA+CGG | - | chr1.3:52855399-52855418 | None:intergenic | 55.0% | |
| CGTAGCTGAGAGTTGTCCGT+GGG | + | chr1.3:52855397-52855416 | MS.gene055327:CDS | 55.0% | |
| CTGATTCCAGCAGGCCTTCA+TGG | + | chr1.3:52855629-52855648 | MS.gene055327:CDS | 55.0% | |
| CTTTGATTGTCCCTCGGCCA+TGG | + | chr1.3:52854587-52854606 | MS.gene055327:CDS | 55.0% | |
| GACCACCTTCTGACAGAAGG+AGG | - | chr1.3:52856030-52856049 | None:intergenic | 55.0% | |
| GACCTCCTTCTGTCAGAAGG+TGG | + | chr1.3:52856025-52856044 | MS.gene055327:intron | 55.0% | |
| GCACTGTTTGGCCGAAGAGT+GGG | - | chr1.3:52856418-52856437 | None:intergenic | 55.0% | |
| GGGCCTAGAACCAGAAATGG+TGG | + | chr1.3:52855653-52855672 | MS.gene055327:CDS | 55.0% | |
| GGGTTCGAACGATATCAGCC+CGG | + | chr1.3:52856282-52856301 | MS.gene055327:intron | 55.0% | |
| GGTGGGCCTAGAACCAGAAA+TGG | + | chr1.3:52855650-52855669 | MS.gene055327:CDS | 55.0% | |
| TATCAGCCCGGCCTTAAGGA+TGG | + | chr1.3:52856294-52856313 | MS.gene055327:CDS | 55.0% | |
| TGCACTGTTTGGCCGAAGAG+TGG | - | chr1.3:52856419-52856438 | None:intergenic | 55.0% | |
| TTCCAGCAGGCCTTCATGGT+GGG | + | chr1.3:52855633-52855652 | MS.gene055327:CDS | 55.0% | |
| !! | TGGTTCTAGGCCCACCATGA+AGG | - | chr1.3:52855646-52855665 | None:intergenic | 55.0% |
| CCGTAGCTGAGAGTTGTCCG+TGG | + | chr1.3:52855396-52855415 | MS.gene055327:CDS | 60.0% | |
| TCTGGTGGTCACTGCGACTG+CGG | + | chr1.3:52855704-52855723 | MS.gene055327:CDS | 60.0% | |
| TCACTGCGACTGCGGCGGTT+GGG | + | chr1.3:52855712-52855731 | MS.gene055327:CDS | 65.0% | |
| TCCCTCGGCCATGGAGACCA+GGG | + | chr1.3:52854596-52854615 | MS.gene055327:CDS | 65.0% | |
| CCCCTGGTCTCCATGGCCGA+GGG | - | chr1.3:52854600-52854619 | None:intergenic | 70.0% | |
| CCCTCGGCCATGGAGACCAG+GGG | + | chr1.3:52854597-52854616 | MS.gene055327:CDS | 70.0% | |
| GACTGCGGCGGTTGGGACGA+GGG | + | chr1.3:52855719-52855738 | MS.gene055327:CDS | 70.0% | |
| GGCCCACCATGAAGGCCTGC+TGG | - | chr1.3:52855638-52855657 | None:intergenic | 70.0% | |
| GGTGGTCACTGCGACTGCGG+CGG | + | chr1.3:52855707-52855726 | MS.gene055327:CDS | 70.0% | |
| GTCACTGCGACTGCGGCGGT+TGG | + | chr1.3:52855711-52855730 | MS.gene055327:CDS | 70.0% | |
| GTCCCTCGGCCATGGAGACC+AGG | + | chr1.3:52854595-52854614 | MS.gene055327:CDS | 70.0% | |
| TCCCCTGGTCTCCATGGCCG+AGG | - | chr1.3:52854601-52854620 | None:intergenic | 70.0% | |
| CGACTGCGGCGGTTGGGACG+AGG | + | chr1.3:52855718-52855737 | MS.gene055327:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52854177 | 52856453 | 52854177 | ID=MS.gene055327 |
| chr1.3 | mRNA | 52854177 | 52856453 | 52854177 | ID=MS.gene055327.t1;Parent=MS.gene055327 |
| chr1.3 | exon | 52854177 | 52855841 | 52854177 | ID=MS.gene055327.t1.exon1;Parent=MS.gene055327.t1 |
| chr1.3 | CDS | 52854177 | 52855841 | 52854177 | ID=cds.MS.gene055327.t1;Parent=MS.gene055327.t1 |
| chr1.3 | exon | 52856283 | 52856453 | 52856283 | ID=MS.gene055327.t1.exon2;Parent=MS.gene055327.t1 |
| chr1.3 | CDS | 52856283 | 52856453 | 52856283 | ID=cds.MS.gene055327.t1;Parent=MS.gene055327.t1 |
| Gene Sequence |
| Protein sequence |
