Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32181.t1 | XP_024638127.1 | 97.7 | 346 | 7 | 1 | 1 | 345 | 21 | 366 | 2.20E-200 | 708 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32181.t1 | A0A396IA44 | 97.7 | 346 | 7 | 1 | 1 | 345 | 21 | 366 | 1.6e-200 | 708.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene32181 | 0.825384 | 4.83E-54 | -1.69E-46 |
| MS.gene050439 | MS.gene32181 | 0.800346 | 1.50E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32181.t1 | MTR_4g090465 | 95.072 | 345 | 6 | 1 | 1 | 345 | 401 | 734 | 0.0 | 689 |
| MS.gene32181.t1 | MTR_2g012570 | 75.921 | 353 | 75 | 2 | 1 | 343 | 40 | 392 | 0.0 | 557 |
| MS.gene32181.t1 | MTR_2g012570 | 75.921 | 353 | 75 | 2 | 1 | 343 | 14 | 366 | 0.0 | 555 |
| MS.gene32181.t1 | MTR_2g012570 | 79.734 | 301 | 59 | 1 | 1 | 299 | 40 | 340 | 0.0 | 505 |
| MS.gene32181.t1 | MTR_2g012570 | 79.734 | 301 | 59 | 1 | 1 | 299 | 14 | 314 | 0.0 | 504 |
| MS.gene32181.t1 | MTR_1g078290 | 56.550 | 313 | 128 | 3 | 39 | 343 | 79 | 391 | 5.20e-128 | 372 |
| MS.gene32181.t1 | MTR_2g005330 | 54.397 | 307 | 136 | 3 | 39 | 343 | 80 | 384 | 1.76e-123 | 360 |
| MS.gene32181.t1 | MTR_1g078290 | 59.770 | 261 | 99 | 2 | 39 | 293 | 79 | 339 | 1.05e-115 | 340 |
| MS.gene32181.t1 | MTR_2g005330 | 59.690 | 258 | 101 | 2 | 39 | 294 | 80 | 336 | 1.26e-115 | 339 |
| MS.gene32181.t1 | MTR_1g078290 | 59.770 | 261 | 99 | 2 | 39 | 293 | 79 | 339 | 6.05e-115 | 339 |
| MS.gene32181.t1 | MTR_2g005330 | 57.202 | 243 | 103 | 1 | 101 | 343 | 1 | 242 | 2.16e-105 | 309 |
| MS.gene32181.t1 | MTR_1g078290 | 58.898 | 236 | 91 | 2 | 39 | 268 | 79 | 314 | 2.28e-101 | 302 |
| MS.gene32181.t1 | MTR_3g086610 | 50.198 | 253 | 119 | 6 | 39 | 291 | 102 | 347 | 9.63e-84 | 258 |
| MS.gene32181.t1 | MTR_8g089815 | 46.735 | 291 | 141 | 8 | 41 | 331 | 103 | 379 | 1.52e-83 | 259 |
| MS.gene32181.t1 | MTR_3g086610 | 50.198 | 253 | 119 | 6 | 39 | 291 | 102 | 347 | 1.92e-83 | 258 |
| MS.gene32181.t1 | MTR_7g033300 | 45.361 | 291 | 146 | 6 | 41 | 331 | 94 | 371 | 1.53e-81 | 253 |
| MS.gene32181.t1 | MTR_2g094650 | 43.234 | 303 | 159 | 6 | 32 | 334 | 91 | 380 | 9.36e-81 | 251 |
| MS.gene32181.t1 | MTR_8g089820 | 49.004 | 251 | 121 | 5 | 41 | 291 | 95 | 338 | 4.69e-80 | 249 |
| MS.gene32181.t1 | MTR_2g094650 | 43.234 | 303 | 158 | 7 | 32 | 334 | 91 | 379 | 2.15e-79 | 248 |
| MS.gene32181.t1 | MTR_4g058800 | 46.718 | 259 | 131 | 5 | 33 | 291 | 75 | 326 | 3.72e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 64.972 | 354 | 106 | 5 | 1 | 340 | 42 | 391 | 6.99e-166 | 469 |
| MS.gene32181.t1 | AT1G61240 | 68.987 | 316 | 86 | 3 | 36 | 340 | 10 | 324 | 9.78e-163 | 459 |
| MS.gene32181.t1 | AT1G11170 | 62.323 | 353 | 118 | 4 | 1 | 341 | 45 | 394 | 2.75e-160 | 456 |
| MS.gene32181.t1 | AT1G11170 | 62.323 | 353 | 118 | 4 | 1 | 341 | 45 | 394 | 2.75e-160 | 456 |
| MS.gene32181.t1 | AT1G11170 | 62.323 | 353 | 118 | 4 | 1 | 341 | 45 | 394 | 2.75e-160 | 456 |
| MS.gene32181.t1 | AT1G11170 | 62.323 | 353 | 118 | 4 | 1 | 341 | 45 | 394 | 2.75e-160 | 456 |
| MS.gene32181.t1 | AT1G61240 | 67.000 | 300 | 91 | 3 | 1 | 295 | 42 | 338 | 1.55e-147 | 421 |
| MS.gene32181.t1 | AT1G11170 | 65.772 | 298 | 94 | 3 | 1 | 293 | 45 | 339 | 2.44e-144 | 412 |
| MS.gene32181.t1 | AT1G11170 | 65.772 | 298 | 94 | 3 | 1 | 293 | 45 | 339 | 2.44e-144 | 412 |
| MS.gene32181.t1 | AT1G11170 | 65.772 | 298 | 94 | 3 | 1 | 293 | 45 | 339 | 2.92e-144 | 412 |
| MS.gene32181.t1 | AT4G12840 | 54.890 | 317 | 127 | 3 | 41 | 344 | 82 | 395 | 9.87e-130 | 377 |
| MS.gene32181.t1 | AT4G12840 | 54.890 | 317 | 127 | 3 | 41 | 344 | 82 | 395 | 1.49e-129 | 376 |
| MS.gene32181.t1 | AT1G11170 | 65.809 | 272 | 85 | 3 | 1 | 267 | 45 | 313 | 5.26e-129 | 372 |
| MS.gene32181.t1 | AT4G12840 | 54.276 | 304 | 123 | 3 | 54 | 344 | 1 | 301 | 1.88e-122 | 354 |
| MS.gene32181.t1 | AT4G18530 | 52.381 | 315 | 139 | 3 | 39 | 342 | 75 | 389 | 6.84e-117 | 343 |
| MS.gene32181.t1 | AT4G18530 | 52.381 | 315 | 139 | 3 | 39 | 342 | 70 | 384 | 7.15e-117 | 343 |
| MS.gene32181.t1 | AT4G18530 | 56.087 | 230 | 100 | 1 | 39 | 267 | 75 | 304 | 3.98e-93 | 280 |
| MS.gene32181.t1 | AT1G11170 | 61.905 | 210 | 72 | 3 | 1 | 205 | 45 | 251 | 1.73e-85 | 259 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 91 | 334 | 2.08e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G67850 | 52.590 | 251 | 112 | 6 | 41 | 291 | 107 | 350 | 3.80e-82 | 255 |
| MS.gene32181.t1 | AT1G08040 | 45.048 | 313 | 153 | 9 | 32 | 344 | 83 | 376 | 7.41e-82 | 254 |
| MS.gene32181.t1 | AT1G08040 | 45.048 | 313 | 153 | 9 | 32 | 344 | 87 | 380 | 8.61e-82 | 254 |
| MS.gene32181.t1 | AT1G08040 | 45.048 | 313 | 153 | 9 | 32 | 344 | 87 | 380 | 8.61e-82 | 254 |
| MS.gene32181.t1 | AT1G08040 | 45.048 | 313 | 153 | 9 | 32 | 344 | 87 | 380 | 8.61e-82 | 254 |
| MS.gene32181.t1 | AT3G26440 | 48.810 | 252 | 123 | 5 | 41 | 292 | 101 | 346 | 1.35e-81 | 254 |
| MS.gene32181.t1 | AT3G26440 | 48.810 | 252 | 123 | 5 | 41 | 292 | 101 | 346 | 1.35e-81 | 254 |
| MS.gene32181.t1 | AT3G26440 | 48.810 | 252 | 123 | 5 | 41 | 292 | 77 | 322 | 1.93e-81 | 253 |
| MS.gene32181.t1 | AT3G26440 | 49.004 | 251 | 122 | 5 | 41 | 291 | 101 | 345 | 2.34e-81 | 252 |
| MS.gene32181.t1 | AT3G26440 | 48.810 | 252 | 123 | 5 | 41 | 292 | 124 | 369 | 2.81e-81 | 253 |
| MS.gene32181.t1 | AT3G26440 | 48.810 | 252 | 123 | 5 | 41 | 292 | 124 | 369 | 2.97e-81 | 253 |
| MS.gene32181.t1 | AT1G13000 | 49.801 | 251 | 119 | 6 | 41 | 291 | 111 | 354 | 5.98e-80 | 249 |
| MS.gene32181.t1 | AT1G13000 | 49.801 | 251 | 119 | 6 | 41 | 291 | 111 | 354 | 5.98e-80 | 249 |
| MS.gene32181.t1 | AT1G13000 | 49.801 | 251 | 119 | 6 | 41 | 291 | 111 | 354 | 5.98e-80 | 249 |
| MS.gene32181.t1 | AT1G13000 | 49.801 | 251 | 119 | 6 | 41 | 291 | 111 | 354 | 5.98e-80 | 249 |
| MS.gene32181.t1 | AT3G27470 | 43.000 | 300 | 157 | 8 | 32 | 331 | 94 | 379 | 9.51e-80 | 249 |
| MS.gene32181.t1 | AT3G27470 | 43.000 | 300 | 157 | 8 | 32 | 331 | 94 | 379 | 9.51e-80 | 249 |
| MS.gene32181.t1 | AT3G27470 | 43.000 | 300 | 157 | 8 | 32 | 331 | 94 | 379 | 9.51e-80 | 249 |
| MS.gene32181.t1 | AT3G27470 | 43.000 | 300 | 157 | 8 | 32 | 331 | 94 | 379 | 9.51e-80 | 249 |
| MS.gene32181.t1 | AT1G24570 | 46.528 | 288 | 140 | 7 | 41 | 327 | 83 | 357 | 1.19e-79 | 248 |
| MS.gene32181.t1 | AT3G27470 | 43.000 | 300 | 157 | 8 | 32 | 331 | 94 | 379 | 1.75e-79 | 248 |
| MS.gene32181.t1 | AT1G24570 | 50.593 | 253 | 118 | 6 | 41 | 292 | 90 | 336 | 2.01e-79 | 248 |
| MS.gene32181.t1 | AT2G28310 | 43.537 | 294 | 152 | 6 | 41 | 334 | 87 | 366 | 4.51e-78 | 244 |
| MS.gene32181.t1 | AT2G28310 | 43.537 | 294 | 152 | 6 | 41 | 334 | 87 | 366 | 4.51e-78 | 244 |
| MS.gene32181.t1 | AT2G28310 | 43.537 | 294 | 152 | 6 | 41 | 334 | 87 | 366 | 4.51e-78 | 244 |
| MS.gene32181.t1 | AT1G13000 | 48.178 | 247 | 117 | 6 | 21 | 267 | 96 | 331 | 4.56e-73 | 230 |
| MS.gene32181.t1 | AT2G25905 | 54.688 | 128 | 56 | 2 | 59 | 185 | 101 | 227 | 1.30e-40 | 142 |
Find 78 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTTTCAACTCTTGAAAA+TGG | 0.168400 | 4.4:+22986970 | None:intergenic |
| CGTCTTTAATCAGTCTTAAA+TGG | 0.196468 | 4.4:+22984297 | None:intergenic |
| TGATGTATCTCTGTCGAATT+TGG | 0.245570 | 4.4:+22985984 | None:intergenic |
| TTTATGATTACATCTTTCTT+TGG | 0.246330 | 4.4:-22986279 | MS.gene32181:CDS |
| AAGTTACCTGTGCACTTTCT+TGG | 0.268852 | 4.4:+22985938 | None:intergenic |
| GCAGATATGTTGAGATTGTA+AGG | 0.347868 | 4.4:-22986043 | MS.gene32181:intron |
| TTATGATTACATCTTTCTTT+GGG | 0.350251 | 4.4:-22986278 | MS.gene32181:CDS |
| TCTTTGGGATGAGGATTTAG+AGG | 0.358243 | 4.4:-22986263 | MS.gene32181:CDS |
| GAAAGCCTCACCTCAGTTCT+CGG | 0.376681 | 4.4:+22984472 | None:intergenic |
| CATCCACATTGGCATCATAA+TGG | 0.394344 | 4.4:+22986579 | None:intergenic |
| TTACACAAAGCGTAATTTGC+TGG | 0.396531 | 4.4:-22986761 | MS.gene32181:CDS |
| TTGTACTTGGCATCTTATAC+AGG | 0.402060 | 4.4:-22985461 | MS.gene32181:intron |
| GATCTTGATCGCAACCATAA+AGG | 0.405000 | 4.4:+22986903 | None:intergenic |
| GGGCAGGTTTGTTGAAGGTA+TGG | 0.414700 | 4.4:-22985512 | MS.gene32181:intron |
| CCATGCTGATCGAGAGAAAA+CGG | 0.429629 | 4.4:+22985486 | None:intergenic |
| GCCTTTCAACTCTTGAAAAT+GGG | 0.429799 | 4.4:+22986971 | None:intergenic |
| CTCAGAATGACCTTGTCCAT+GGG | 0.449329 | 4.4:-22985227 | MS.gene32181:intron |
| ATGGATGGCGGGATCTTGAC+TGG | 0.452260 | 4.4:-22986559 | MS.gene32181:CDS |
| ATCACTTTCATCTGAACACT+TGG | 0.453203 | 4.4:+22985809 | None:intergenic |
| GTTGAGATTGTAAGGGAAGA+AGG | 0.461152 | 4.4:-22986035 | MS.gene32181:CDS |
| TGTAGATGCTATGGTGCAAA+AGG | 0.461764 | 4.4:-22986707 | MS.gene32181:intron |
| TTGAGATTGTAAGGGAAGAA+GGG | 0.464317 | 4.4:-22986034 | MS.gene32181:CDS |
| TCATAAATATACACTATATC+CGG | 0.465522 | 4.4:+22986295 | None:intergenic |
| CACAAGGCAATACCAACTCT+TGG | 0.470012 | 4.4:-22984981 | MS.gene32181:CDS |
| GATTGTAAGGGAAGAAGGGT+TGG | 0.478759 | 4.4:-22986030 | MS.gene32181:CDS |
| AATGACCTTGTCCATGGGTG+GGG | 0.481878 | 4.4:-22985222 | MS.gene32181:CDS |
| TCTCAGAATGACCTTGTCCA+TGG | 0.484262 | 4.4:-22985228 | MS.gene32181:intron |
| AGTGATGGGCCACCGTGCAC+CGG | 0.486583 | 4.4:-22985792 | MS.gene32181:CDS |
| GTCGAATTTGGATGAAGAGC+TGG | 0.487814 | 4.4:+22985996 | None:intergenic |
| AAAGTATAATGTAGATGCTA+TGG | 0.487995 | 4.4:-22986716 | MS.gene32181:CDS |
| TTACATCTTTCTTTGGGATG+AGG | 0.491595 | 4.4:-22986272 | MS.gene32181:CDS |
| CCTTGTCCATGGGTGGGGAA+TGG | 0.507580 | 4.4:-22985217 | MS.gene32181:CDS |
| CCATCACCGAGGACAAAAGT+TGG | 0.509891 | 4.4:-22984326 | MS.gene32181:CDS |
| GATCAGCATGGTATTGTACT+TGG | 0.510197 | 4.4:-22985474 | MS.gene32181:CDS |
| TTAAAATCTTCAAAGAGCGC+TGG | 0.510635 | 4.4:-22984356 | MS.gene32181:CDS |
| TCAGTTCTCGGATCAACTGC+TGG | 0.511607 | 4.4:+22984484 | None:intergenic |
| CATTGATTTCAGTTTCTCAC+AGG | 0.512167 | 4.4:-22986623 | MS.gene32181:intron |
| CATGCTGATCGAGAGAAAAC+GGG | 0.515431 | 4.4:+22985487 | None:intergenic |
| AATTTGGGCAGGTTTGTTGA+AGG | 0.516245 | 4.4:-22985517 | MS.gene32181:intron |
| CATTATGATGCCAATGTGGA+TGG | 0.538429 | 4.4:-22986578 | MS.gene32181:CDS |
| GTGATGGGCCACCGTGCACC+GGG | 0.538581 | 4.4:-22985791 | MS.gene32181:intron |
| ATGCTTCTGAGCAGATAAGA+AGG | 0.542594 | 4.4:-22984395 | MS.gene32181:intron |
| AGAATGACCTTGTCCATGGG+TGG | 0.544063 | 4.4:-22985224 | MS.gene32181:CDS |
| CATCACCGAGGACAAAAGTT+GGG | 0.546912 | 4.4:-22984325 | MS.gene32181:CDS |
| GTGTGAAAGTCATACCTTGA+CGG | 0.553954 | 4.4:+22986226 | None:intergenic |
| GAAACTAGGATACTGTGCTC+AGG | 0.556174 | 4.4:-22985190 | MS.gene32181:intron |
| TGCCAATGTGGATGGATGGC+GGG | 0.560546 | 4.4:-22986570 | MS.gene32181:CDS |
| GAATGACCTTGTCCATGGGT+GGG | 0.563244 | 4.4:-22985223 | MS.gene32181:CDS |
| TCATATCCATTCCCCACCCA+TGG | 0.564572 | 4.4:+22985211 | None:intergenic |
| TGGGGAATGGATATGAAACT+AGG | 0.566671 | 4.4:-22985204 | MS.gene32181:CDS |
| AGATAAGAAGGCAATCAGCA+TGG | 0.567644 | 4.4:-22984383 | MS.gene32181:CDS |
| AATTTGCTGGCTGTTGCAGT+TGG | 0.570310 | 4.4:-22986748 | MS.gene32181:CDS |
| GAGTATCTGGAGAGAGCAAG+AGG | 0.574029 | 4.4:-22987231 | MS.gene32181:intron |
| ATAGAATTACAGTCAGAGCT+AGG | 0.577411 | 4.4:-22985962 | MS.gene32181:CDS |
| CAGATATGTTGAGATTGTAA+GGG | 0.582200 | 4.4:-22986042 | MS.gene32181:CDS |
| AAGTGTTCAGATGAAAGTGA+TGG | 0.582304 | 4.4:-22985807 | MS.gene32181:CDS |
| AAGGCAATACCAACTCTTGG+CGG | 0.584775 | 4.4:-22984978 | MS.gene32181:CDS |
| TGACTGCTACCGCCAAGAGT+TGG | 0.585737 | 4.4:+22984969 | None:intergenic |
| GATAAGAAGGCAATCAGCAT+GGG | 0.590121 | 4.4:-22984382 | MS.gene32181:CDS |
| CTAGGACCAAGAAAGTGCAC+AGG | 0.593618 | 4.4:-22985944 | MS.gene32181:intron |
| CCATTCCCCACCCATGGACA+AGG | 0.600227 | 4.4:+22985217 | None:intergenic |
| AGTGTTCAGATGAAAGTGAT+GGG | 0.603765 | 4.4:-22985806 | MS.gene32181:CDS |
| GTATCAGTATAAGCAAGAAG+AGG | 0.605402 | 4.4:-22987382 | MS.gene32181:intron |
| ATGGTTGCGATCAAGATCAA+AGG | 0.608476 | 4.4:-22986898 | MS.gene32181:intron |
| GGAGATCGCAGTCAGAATGT+TGG | 0.608724 | 4.4:-22985029 | MS.gene32181:CDS |
| GTAATTAATTACCCGGTGCA+CGG | 0.611574 | 4.4:+22985780 | None:intergenic |
| ATCCCGCCATCCATCCACAT+TGG | 0.630093 | 4.4:+22986568 | None:intergenic |
| ATGATGCCAATGTGGATGGA+TGG | 0.633000 | 4.4:-22986574 | MS.gene32181:CDS |
| ATGCCAATGTGGATGGATGG+CGG | 0.662036 | 4.4:-22986571 | MS.gene32181:CDS |
| GTTCTCGGATCAACTGCTGG+TGG | 0.675254 | 4.4:+22984487 | None:intergenic |
| TTGTTTCCTAATCAGAGACG+CGG | 0.682861 | 4.4:-22984514 | MS.gene32181:intron |
| ATTAATTACCCGGTGCACGG+TGG | 0.706137 | 4.4:+22985783 | None:intergenic |
| AGCAGTTGATCCGAGAACTG+AGG | 0.706646 | 4.4:-22984482 | MS.gene32181:intron |
| GTTCCATTATGATGCCAATG+TGG | 0.713920 | 4.4:-22986582 | MS.gene32181:CDS |
| GTAGTGTGTATTATACCTCG+TGG | 0.714595 | 4.4:+22986945 | None:intergenic |
| GAGTTGAAAGGCTTGCCACG+AGG | 0.724783 | 4.4:-22986960 | MS.gene32181:CDS |
| AGACGAGTCTATGAACGCAG+AGG | 0.737399 | 4.4:-22985837 | MS.gene32181:CDS |
| CTGGAATCAAGCCATCACCG+AGG | 0.779303 | 4.4:-22984337 | MS.gene32181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATATTAAATTTAA+AGG | + | chr4.4:22986404-22986423 | None:intergenic | 0.0% |
| !!! | ATTTAATATTATTTTTATAT+TGG | - | chr4.4:22986408-22986427 | MS.gene32181:intron | 0.0% |
| !!! | TTTAATATTATTTTTATATT+GGG | - | chr4.4:22986409-22986428 | MS.gene32181:intron | 0.0% |
| !! | AATGATTAAAATTCAAAATA+TGG | + | chr4.4:22986036-22986055 | None:intergenic | 10.0% |
| !! | CAAAGAAAAAATTTATTAAT+TGG | - | chr4.4:22985636-22985655 | MS.gene32181:intron | 10.0% |
| !!! | GTATTTTTTTATAATTTGTT+AGG | - | chr4.4:22985028-22985047 | MS.gene32181:CDS | 10.0% |
| !!! | TAGAAACTTTTATAAAATTT+GGG | - | chr4.4:22986181-22986200 | MS.gene32181:intron | 10.0% |
| !!! | TATTTTGAATTTTAATCATT+AGG | - | chr4.4:22986036-22986055 | MS.gene32181:CDS | 10.0% |
| !!! | TTAGAAACTTTTATAAAATT+TGG | - | chr4.4:22986180-22986199 | MS.gene32181:intron | 10.0% |
| !!! | TTTATTTTGATCATTTATTT+TGG | + | chr4.4:22986954-22986973 | None:intergenic | 10.0% |
| !! | AATCATAAATTTATGTTCAA+TGG | - | chr4.4:22986803-22986822 | MS.gene32181:intron | 15.0% |
| !! | ATGATGAATTATCAAAATTA+TGG | + | chr4.4:22986457-22986476 | None:intergenic | 15.0% |
| !! | CAAAAAATGAAATTTCAAAT+TGG | + | chr4.4:22984427-22984446 | None:intergenic | 15.0% |
| !! | TTAATGAACTAAGATTATAA+GGG | + | chr4.4:22987142-22987161 | None:intergenic | 15.0% |
| !!! | TGAACATAAATTTATGATTT+TGG | + | chr4.4:22986802-22986821 | None:intergenic | 15.0% |
| !! | AAAGAAAGTAATTAATTACC+CGG | + | chr4.4:22985943-22985962 | None:intergenic | 20.0% |
| !! | AATACATCAAAACTCAAATT+TGG | + | chr4.4:22984555-22984574 | None:intergenic | 20.0% |
| !! | ATGAATCATAAAAACCATTT+AGG | - | chr4.4:22986292-22986311 | MS.gene32181:CDS | 20.0% |
| !! | GATCATTAATGAATAATAAG+TGG | - | chr4.4:22986975-22986994 | MS.gene32181:CDS | 20.0% |
| !! | GTTAATGAACTAAGATTATA+AGG | + | chr4.4:22987143-22987162 | None:intergenic | 20.0% |
| !! | TCATAAATATACACTATATC+CGG | + | chr4.4:22985421-22985440 | None:intergenic | 20.0% |
| !! | TGTATGTTGAATTTAATTAG+TGG | - | chr4.4:22986641-22986660 | MS.gene32181:intron | 20.0% |
| !! | TTAATTACTTTCTTTGAACA+CGG | - | chr4.4:22985948-22985967 | MS.gene32181:CDS | 20.0% |
| !! | TTATGATTACATCTTTCTTT+GGG | - | chr4.4:22985435-22985454 | MS.gene32181:intron | 20.0% |
| !! | TTTATGATTACATCTTTCTT+TGG | - | chr4.4:22985434-22985453 | MS.gene32181:intron | 20.0% |
| !!! | CATTCATTTGAATTTTGTTT+AGG | - | chr4.4:22986348-22986367 | MS.gene32181:intron | 20.0% |
| !!! | TTGAATTTTAATCATTAGGA+TGG | - | chr4.4:22986040-22986059 | MS.gene32181:CDS | 20.0% |
| ! | AAAGTATAATGTAGATGCTA+TGG | - | chr4.4:22984997-22985016 | MS.gene32181:CDS | 25.0% |
| ! | AATGCAAGTTAATTGGAATA+AGG | + | chr4.4:22986332-22986351 | None:intergenic | 25.0% |
| ! | AATTAACAACATTTCCTTTG+TGG | - | chr4.4:22986110-22986129 | MS.gene32181:intron | 25.0% |
| ! | ATGAATCTTCCTGTTATAAA+TGG | - | chr4.4:22985244-22985263 | MS.gene32181:intron | 25.0% |
| ! | ATGCAAGTTAATTGGAATAA+GGG | + | chr4.4:22986331-22986350 | None:intergenic | 25.0% |
| ! | ATGTTCAAAATCTTGTACAT+TGG | - | chr4.4:22986001-22986020 | MS.gene32181:CDS | 25.0% |
| ! | ATTAACAACATTTCCTTTGT+GGG | - | chr4.4:22986111-22986130 | MS.gene32181:intron | 25.0% |
| ! | GAATAAATTTCACAATGTAG+GGG | + | chr4.4:22987084-22987103 | None:intergenic | 25.0% |
| ! | GGAATAAATTTCACAATGTA+GGG | + | chr4.4:22987085-22987104 | None:intergenic | 25.0% |
| ! | GTCTATCTGATAAATGTATA+TGG | + | chr4.4:22984454-22984473 | None:intergenic | 25.0% |
| ! | TCAAATGAATGCAAGTTAAT+TGG | + | chr4.4:22986339-22986358 | None:intergenic | 25.0% |
| ! | TTACTCAAACCATTTATAAC+AGG | + | chr4.4:22985256-22985275 | None:intergenic | 25.0% |
| ! | TTTATCAGATAGACAAAAAC+TGG | - | chr4.4:22984460-22984479 | MS.gene32181:intron | 25.0% |
| ! | TTTATGATTCATATGAACCA+TGG | + | chr4.4:22986284-22986303 | None:intergenic | 25.0% |
| ! | TTTGTCAAGAAACATAAGAA+GGG | + | chr4.4:22986850-22986869 | None:intergenic | 25.0% |
| !! | AACTTTTATAAAATTTGGGC+AGG | - | chr4.4:22986185-22986204 | MS.gene32181:intron | 25.0% |
| !! | ATAAAAACCATTTAGGTTCT+AGG | - | chr4.4:22986299-22986318 | MS.gene32181:CDS | 25.0% |
| !! | ATGTGTTACAATTTTAGACA+AGG | + | chr4.4:22987300-22987319 | None:intergenic | 25.0% |
| !! | TAGTGAATATGTTTTTCACA+AGG | - | chr4.4:22986716-22986735 | MS.gene32181:CDS | 25.0% |
| !! | TTTTGTCAAGAAACATAAGA+AGG | + | chr4.4:22986851-22986870 | None:intergenic | 25.0% |
| !!! | ATTTATGATTTTGGAGAGAA+AGG | + | chr4.4:22986793-22986812 | None:intergenic | 25.0% |
| !!! | GGATTATTTTGATCTATCAT+CGG | + | chr4.4:22986436-22986455 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCCCTTCAGAAA+GGG | - | chr4.4:22985554-22985573 | MS.gene32181:intron | 25.0% |
| !!! | TTTTTTTTTTCCCTTCAGAA+AGG | - | chr4.4:22985553-22985572 | MS.gene32181:intron | 25.0% |
| AAAATACATCATAGTTCCTG+AGG | + | chr4.4:22986906-22986925 | None:intergenic | 30.0% | |
| AAAGAACAATGCAAAGATGT+TGG | + | chr4.4:22984845-22984864 | None:intergenic | 30.0% | |
| AAATACATCATAGTTCCTGA+GGG | + | chr4.4:22986905-22986924 | None:intergenic | 30.0% | |
| ACAAATGCTTAGCTAGTTAA+TGG | - | chr4.4:22984579-22984598 | MS.gene32181:intron | 30.0% | |
| AGCTAGTTAATGGTAAATGA+TGG | - | chr4.4:22984589-22984608 | MS.gene32181:intron | 30.0% | |
| ATGTTTCTTGACAAAATCCA+TGG | - | chr4.4:22986855-22986874 | MS.gene32181:intron | 30.0% | |
| CAGATATGTTGAGATTGTAA+GGG | - | chr4.4:22985671-22985690 | MS.gene32181:intron | 30.0% | |
| CTGCTAAAAAACAAACAAAG+TGG | - | chr4.4:22985199-22985218 | MS.gene32181:CDS | 30.0% | |
| CTTCTAAACGTCATTGAAAA+CGG | + | chr4.4:22987113-22987132 | None:intergenic | 30.0% | |
| GGGAATAAATTTCACAATGT+AGG | + | chr4.4:22987086-22987105 | None:intergenic | 30.0% | |
| TAACCTGATATCACATATTC+AGG | + | chr4.4:22984928-22984947 | None:intergenic | 30.0% | |
| TAATGAATAATAAGTGGTCC+CGG | - | chr4.4:22986981-22987000 | MS.gene32181:CDS | 30.0% | |
| TCTTAGTTCATTAACTAACC+TGG | - | chr4.4:22987148-22987167 | MS.gene32181:intron | 30.0% | |
| TCTTATACAGGTAAATTCCA+TGG | - | chr4.4:22986264-22986283 | MS.gene32181:CDS | 30.0% | |
| TGCAAAAAGATTTCTACATC+CGG | - | chr4.4:22985399-22985418 | MS.gene32181:intron | 30.0% | |
| TGTGTATTCTCTATTCACAT+TGG | - | chr4.4:22984687-22984706 | MS.gene32181:intron | 30.0% | |
| TGTTTCTTGACAAAATCCAT+GGG | - | chr4.4:22986856-22986875 | MS.gene32181:intron | 30.0% | |
| TTAACAACATTTCCTTTGTG+GGG | - | chr4.4:22986112-22986131 | MS.gene32181:intron | 30.0% | |
| ! | AAATCCATGGGATTTTACTT+CGG | - | chr4.4:22986868-22986887 | MS.gene32181:intron | 30.0% |
| ! | GTGAAATCAATGTCATTTCA+GGG | - | chr4.4:22986663-22986682 | MS.gene32181:intron | 30.0% |
| !! | GTTTTAACCTAGAACCTAAA+TGG | + | chr4.4:22986309-22986328 | None:intergenic | 30.0% |
| !!! | ATTTTGAGTTAAGGCCTTTA+TGG | - | chr4.4:22984796-22984815 | MS.gene32181:intron | 30.0% |
| !!! | CTACTTCAGATTTTGAGTTA+AGG | - | chr4.4:22984787-22984806 | MS.gene32181:intron | 30.0% |
| !!! | TAAGCTAGCTAGTGATTTTT+TGG | - | chr4.4:22984901-22984920 | MS.gene32181:intron | 30.0% |
| AAGTAAGAAAACTCGAGTGT+AGG | + | chr4.4:22985854-22985873 | None:intergenic | 35.0% | |
| AAGTGTTCAGATGAAAGTGA+TGG | - | chr4.4:22985906-22985925 | MS.gene32181:intron | 35.0% | |
| AGCCTTTCAACTCTTGAAAA+TGG | + | chr4.4:22984746-22984765 | None:intergenic | 35.0% | |
| AGTATACTAAATCCCCACAA+AGG | + | chr4.4:22986127-22986146 | None:intergenic | 35.0% | |
| AGTGTTCAGATGAAAGTGAT+GGG | - | chr4.4:22985907-22985926 | MS.gene32181:intron | 35.0% | |
| ATAGAATTACAGTCAGAGCT+AGG | - | chr4.4:22985751-22985770 | MS.gene32181:intron | 35.0% | |
| ATCACTTTCATCTGAACACT+TGG | + | chr4.4:22985907-22985926 | None:intergenic | 35.0% | |
| GCAGATATGTTGAGATTGTA+AGG | - | chr4.4:22985670-22985689 | MS.gene32181:intron | 35.0% | |
| GCCTTTCAACTCTTGAAAAT+GGG | + | chr4.4:22984745-22984764 | None:intergenic | 35.0% | |
| GTATCAGTATAAGCAAGAAG+AGG | - | chr4.4:22984331-22984350 | MS.gene32181:CDS | 35.0% | |
| TAATGCAAGAATTGCAGAGT+AGG | + | chr4.4:22984647-22984666 | None:intergenic | 35.0% | |
| TCATAACATTTGACAGTCCT+TGG | - | chr4.4:22986577-22986596 | MS.gene32181:CDS | 35.0% | |
| TGATGTATCTCTGTCGAATT+TGG | + | chr4.4:22985732-22985751 | None:intergenic | 35.0% | |
| TTGAGATTGTAAGGGAAGAA+GGG | - | chr4.4:22985679-22985698 | MS.gene32181:intron | 35.0% | |
| TTGTACTTGGCATCTTATAC+AGG | - | chr4.4:22986252-22986271 | MS.gene32181:CDS | 35.0% | |
| ! | AAATCTTTTTGCAAACCACC+TGG | + | chr4.4:22985392-22985411 | None:intergenic | 35.0% |
| ! | AATCCATGGGATTTTACTTC+GGG | - | chr4.4:22986869-22986888 | MS.gene32181:intron | 35.0% |
| ! | AATCTTTTTGCAAACCACCT+GGG | + | chr4.4:22985391-22985410 | None:intergenic | 35.0% |
| ! | GGTGAAATCAATGTCATTTC+AGG | - | chr4.4:22986662-22986681 | MS.gene32181:intron | 35.0% |
| ! | TAGAAAGTTTTTCTCCGTCA+AGG | - | chr4.4:22985473-22985492 | MS.gene32181:CDS | 35.0% |
| ! | TAGACAAAAACTGGAGTATC+TGG | - | chr4.4:22984469-22984488 | MS.gene32181:intron | 35.0% |
| ! | TTAAAATCTTCAAAGAGCGC+TGG | - | chr4.4:22987357-22987376 | MS.gene32181:intron | 35.0% |
| ! | TTACACAAAGCGTAATTTGC+TGG | - | chr4.4:22984952-22984971 | MS.gene32181:intron | 35.0% |
| ! | TTTTCTACACCCTTTCTGAA+GGG | + | chr4.4:22985566-22985585 | None:intergenic | 35.0% |
| ! | TTTTTCTACACCCTTTCTGA+AGG | + | chr4.4:22985567-22985586 | None:intergenic | 35.0% |
| !! | ACCCATTTTCAAGAGTTGAA+AGG | - | chr4.4:22984741-22984760 | MS.gene32181:intron | 35.0% |
| !! | CATTGATTTCAGTTTCTCAC+AGG | - | chr4.4:22985090-22985109 | MS.gene32181:intron | 35.0% |
| !! | TATGATTTTGGAGAGAAAGG+AGG | + | chr4.4:22986790-22986809 | None:intergenic | 35.0% |
| !! | TTACATCTTTCTTTGGGATG+AGG | - | chr4.4:22985441-22985460 | MS.gene32181:intron | 35.0% |
| AAACGTCATTGAAAACGGCA+AGG | + | chr4.4:22987108-22987127 | None:intergenic | 40.0% | |
| AACGTCATTGAAAACGGCAA+GGG | + | chr4.4:22987107-22987126 | None:intergenic | 40.0% | |
| AAGTTACCTGTGCACTTTCT+TGG | + | chr4.4:22985778-22985797 | None:intergenic | 40.0% | |
| AGAAAACACAATGCACTCCA+AGG | + | chr4.4:22986597-22986616 | None:intergenic | 40.0% | |
| AGATAAGAAGGCAATCAGCA+TGG | - | chr4.4:22987330-22987349 | MS.gene32181:intron | 40.0% | |
| ATGCTTCTGAGCAGATAAGA+AGG | - | chr4.4:22987318-22987337 | MS.gene32181:intron | 40.0% | |
| ATGGTTGCGATCAAGATCAA+AGG | - | chr4.4:22984815-22984834 | MS.gene32181:intron | 40.0% | |
| CATCCACATTGGCATCATAA+TGG | + | chr4.4:22985137-22985156 | None:intergenic | 40.0% | |
| CATTATGATGCCAATGTGGA+TGG | - | chr4.4:22985135-22985154 | MS.gene32181:intron | 40.0% | |
| GATAAGAAGGCAATCAGCAT+GGG | - | chr4.4:22987331-22987350 | MS.gene32181:intron | 40.0% | |
| GATCAGCATGGTATTGTACT+TGG | - | chr4.4:22986239-22986258 | MS.gene32181:intron | 40.0% | |
| GATCTTGATCGCAACCATAA+AGG | + | chr4.4:22984813-22984832 | None:intergenic | 40.0% | |
| GGTCCTGAATATGTGATATC+AGG | - | chr4.4:22984922-22984941 | MS.gene32181:intron | 40.0% | |
| GTAATTAATTACCCGGTGCA+CGG | + | chr4.4:22985936-22985955 | None:intergenic | 40.0% | |
| GTAGTGTGTATTATACCTCG+TGG | + | chr4.4:22984771-22984790 | None:intergenic | 40.0% | |
| GTGGGGATTTAGTATACTCT+TGG | - | chr4.4:22986129-22986148 | MS.gene32181:intron | 40.0% | |
| GTGTGAAAGTCATACCTTGA+CGG | + | chr4.4:22985490-22985509 | None:intergenic | 40.0% | |
| GTTCCATTATGATGCCAATG+TGG | - | chr4.4:22985131-22985150 | MS.gene32181:intron | 40.0% | |
| GTTGAGATTGTAAGGGAAGA+AGG | - | chr4.4:22985678-22985697 | MS.gene32181:intron | 40.0% | |
| TGATTTCTGAGTTCTTTCCC+AGG | - | chr4.4:22985371-22985390 | MS.gene32181:intron | 40.0% | |
| TGGGGAATGGATATGAAACT+AGG | - | chr4.4:22986509-22986528 | MS.gene32181:intron | 40.0% | |
| TGTAGATGCTATGGTGCAAA+AGG | - | chr4.4:22985006-22985025 | MS.gene32181:CDS | 40.0% | |
| TTGTTTCCTAATCAGAGACG+CGG | - | chr4.4:22987199-22987218 | MS.gene32181:intron | 40.0% | |
| ! | CTTAACCCAACTTTTGTCCT+CGG | + | chr4.4:22987396-22987415 | None:intergenic | 40.0% |
| !! | AATTTGGGCAGGTTTGTTGA+AGG | - | chr4.4:22986196-22986215 | MS.gene32181:intron | 40.0% |
| !! | ATGGGATTTTACTTCGGGTT+CGG | - | chr4.4:22986874-22986893 | MS.gene32181:intron | 40.0% |
| !! | CTGCTTTGACTTTTCGAACT+TGG | - | chr4.4:22984513-22984532 | MS.gene32181:intron | 40.0% |
| !! | TCTTTGGGATGAGGATTTAG+AGG | - | chr4.4:22985450-22985469 | MS.gene32181:intron | 40.0% |
| AAAGTGAACGTAAGACTGCC+AGG | + | chr4.4:22987169-22987188 | None:intergenic | 45.0% | |
| AAGAATTGCAGAGTAGGTGG+TGG | + | chr4.4:22984641-22984660 | None:intergenic | 45.0% | |
| AAGGCAATACCAACTCTTGG+CGG | - | chr4.4:22986735-22986754 | MS.gene32181:CDS | 45.0% | |
| AATGTAGGGGCAATTGCCAA+GGG | + | chr4.4:22987071-22987090 | None:intergenic | 45.0% | |
| ACGTCATTGAAAACGGCAAG+GGG | + | chr4.4:22987106-22987125 | None:intergenic | 45.0% | |
| ATGATGCCAATGTGGATGGA+TGG | - | chr4.4:22985139-22985158 | MS.gene32181:intron | 45.0% | |
| CACAAGGCAATACCAACTCT+TGG | - | chr4.4:22986732-22986751 | MS.gene32181:CDS | 45.0% | |
| CATCACCGAGGACAAAAGTT+GGG | - | chr4.4:22987388-22987407 | MS.gene32181:CDS | 45.0% | |
| CATGCTGATCGAGAGAAAAC+GGG | + | chr4.4:22986229-22986248 | None:intergenic | 45.0% | |
| CCATGCTGATCGAGAGAAAA+CGG | + | chr4.4:22986230-22986249 | None:intergenic | 45.0% | |
| CTCAGAATGACCTTGTCCAT+GGG | - | chr4.4:22986486-22986505 | MS.gene32181:intron | 45.0% | |
| GAAACTAGGATACTGTGCTC+AGG | - | chr4.4:22986523-22986542 | MS.gene32181:CDS | 45.0% | |
| GAACCCGAAGTAAAATCCCA+TGG | + | chr4.4:22986875-22986894 | None:intergenic | 45.0% | |
| GATTGTAAGGGAAGAAGGGT+TGG | - | chr4.4:22985683-22985702 | MS.gene32181:intron | 45.0% | |
| GTCGAATTTGGATGAAGAGC+TGG | + | chr4.4:22985720-22985739 | None:intergenic | 45.0% | |
| TCTCAGAATGACCTTGTCCA+TGG | - | chr4.4:22986485-22986504 | MS.gene32181:intron | 45.0% | |
| TGAATAATAAGTGGTCCCGG+CGG | - | chr4.4:22986984-22987003 | MS.gene32181:CDS | 45.0% | |
| TGCAAGAATTGCAGAGTAGG+TGG | + | chr4.4:22984644-22984663 | None:intergenic | 45.0% | |
| TTTCTGAGTTCTTTCCCAGG+TGG | - | chr4.4:22985374-22985393 | MS.gene32181:intron | 45.0% | |
| ! | ATCACTAGCTAGCTTAGCTC+AGG | + | chr4.4:22984897-22984916 | None:intergenic | 45.0% |
| !! | AATTTGCTGGCTGTTGCAGT+TGG | - | chr4.4:22984965-22984984 | MS.gene32181:CDS | 45.0% |
| !! | TGGGATTTTACTTCGGGTTC+GGG | - | chr4.4:22986875-22986894 | MS.gene32181:intron | 45.0% |
| !! | AAAGAAAAAATTTATTAATT+GGG | - | chr4.4:22985637-22985656 | MS.gene32181:intron | 5.0% |
| AATAATAAGTGGTCCCGGCG+GGG | - | chr4.4:22986986-22987005 | MS.gene32181:intron | 50.0% | |
| AATGACCTTGTCCATGGGTG+GGG | - | chr4.4:22986491-22986510 | MS.gene32181:intron | 50.0% | |
| AGAATGACCTTGTCCATGGG+TGG | - | chr4.4:22986489-22986508 | MS.gene32181:intron | 50.0% | |
| AGACGAGTCTATGAACGCAG+AGG | - | chr4.4:22985876-22985895 | MS.gene32181:intron | 50.0% | |
| AGCAGTTGATCCGAGAACTG+AGG | - | chr4.4:22987231-22987250 | MS.gene32181:intron | 50.0% | |
| AGCTCAGTTGGTTAGAGCGT+TGG | + | chr4.4:22987041-22987060 | None:intergenic | 50.0% | |
| ATGCCAATGTGGATGGATGG+CGG | - | chr4.4:22985142-22985161 | MS.gene32181:intron | 50.0% | |
| ATGTAGGGGCAATTGCCAAG+GGG | + | chr4.4:22987070-22987089 | None:intergenic | 50.0% | |
| ATTAATTACCCGGTGCACGG+TGG | + | chr4.4:22985933-22985952 | None:intergenic | 50.0% | |
| CAATGTAGGGGCAATTGCCA+AGG | + | chr4.4:22987072-22987091 | None:intergenic | 50.0% | |
| CCATCACCGAGGACAAAAGT+TGG | - | chr4.4:22987387-22987406 | MS.gene32181:CDS | 50.0% | |
| CGCTCTAACCAACTGAGCTA+CGG | - | chr4.4:22987042-22987061 | MS.gene32181:intron | 50.0% | |
| GAAAGCCTCACCTCAGTTCT+CGG | + | chr4.4:22987244-22987263 | None:intergenic | 50.0% | |
| GAATAATAAGTGGTCCCGGC+GGG | - | chr4.4:22986985-22987004 | MS.gene32181:intron | 50.0% | |
| GAATGACCTTGTCCATGGGT+GGG | - | chr4.4:22986490-22986509 | MS.gene32181:intron | 50.0% | |
| GAGTATCTGGAGAGAGCAAG+AGG | - | chr4.4:22984482-22984501 | MS.gene32181:intron | 50.0% | |
| GCTCTAACCAACTGAGCTAC+GGG | - | chr4.4:22987043-22987062 | MS.gene32181:intron | 50.0% | |
| GGAGATCGCAGTCAGAATGT+TGG | - | chr4.4:22986684-22986703 | MS.gene32181:intron | 50.0% | |
| TCAGTTCTCGGATCAACTGC+TGG | + | chr4.4:22987232-22987251 | None:intergenic | 50.0% | |
| TCATATCCATTCCCCACCCA+TGG | + | chr4.4:22986505-22986524 | None:intergenic | 50.0% | |
| TTGATCCGAGAACTGAGGTG+AGG | - | chr4.4:22987236-22987255 | MS.gene32181:CDS | 50.0% | |
| ! | CCAACTTTTGTCCTCGGTGA+TGG | + | chr4.4:22987390-22987409 | None:intergenic | 50.0% |
| ! | CCGTTTTCTCTCGATCAGCA+TGG | - | chr4.4:22986227-22986246 | MS.gene32181:intron | 50.0% |
| ! | CTAGGACCAAGAAAGTGCAC+AGG | - | chr4.4:22985769-22985788 | MS.gene32181:intron | 50.0% |
| !! | GGGATTTTACTTCGGGTTCG+GGG | - | chr4.4:22986876-22986895 | MS.gene32181:intron | 50.0% |
| !! | GGGCAGGTTTGTTGAAGGTA+TGG | - | chr4.4:22986201-22986220 | MS.gene32181:intron | 50.0% |
| ATCCCGCCATCCATCCACAT+TGG | + | chr4.4:22985148-22985167 | None:intergenic | 55.0% | |
| CTGGAATCAAGCCATCACCG+AGG | - | chr4.4:22987376-22987395 | MS.gene32181:intron | 55.0% | |
| GAGTTGAAAGGCTTGCCACG+AGG | - | chr4.4:22984753-22984772 | MS.gene32181:intron | 55.0% | |
| GTCTTATGAGCCGAAGGTCG+CGG | + | chr4.4:22987019-22987038 | None:intergenic | 55.0% | |
| GTTCTCGGATCAACTGCTGG+TGG | + | chr4.4:22987229-22987248 | None:intergenic | 55.0% | |
| TCTTATGAGCCGAAGGTCGC+GGG | + | chr4.4:22987018-22987037 | None:intergenic | 55.0% | |
| TGACTGCTACCGCCAAGAGT+TGG | + | chr4.4:22986747-22986766 | None:intergenic | 55.0% | |
| TGCCAATGTGGATGGATGGC+GGG | - | chr4.4:22985143-22985162 | MS.gene32181:intron | 55.0% | |
| !! | ATGGATGGCGGGATCTTGAC+TGG | - | chr4.4:22985154-22985173 | MS.gene32181:intron | 55.0% |
| !! | GCGTTGGTCTTATGAGCCGA+AGG | + | chr4.4:22987025-22987044 | None:intergenic | 55.0% |
| AACTGAGCTACGGGACCCCT+TGG | - | chr4.4:22987052-22987071 | MS.gene32181:intron | 60.0% | |
| AAGGGGTCCCGTAGCTCAGT+TGG | + | chr4.4:22987053-22987072 | None:intergenic | 60.0% | |
| CCATTCCCCACCCATGGACA+AGG | + | chr4.4:22986499-22986518 | None:intergenic | 60.0% | |
| CCTTGTCCATGGGTGGGGAA+TGG | - | chr4.4:22986496-22986515 | MS.gene32181:intron | 60.0% | |
| GGTGAGCCGCGTCTCTGATT+AGG | + | chr4.4:22987208-22987227 | None:intergenic | 60.0% | |
| GGGCTTGAACCCGCGACCTT+CGG | - | chr4.4:22987006-22987025 | MS.gene32181:intron | 65.0% | |
| !! | AGTGATGGGCCACCGTGCAC+CGG | - | chr4.4:22985921-22985940 | MS.gene32181:intron | 65.0% |
| TCGGGTTCGGGGCAACCCTC+AGG | - | chr4.4:22986887-22986906 | MS.gene32181:intron | 70.0% | |
| !! | GTGATGGGCCACCGTGCACC+GGG | - | chr4.4:22985922-22985941 | MS.gene32181:intron | 70.0% |
| GTCGCGGGTTCAAGCCCCGC+CGG | + | chr4.4:22987003-22987022 | None:intergenic | 75.0% | |
| TCGCGGGTTCAAGCCCCGCC+GGG | + | chr4.4:22987002-22987021 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 22984302 | 22987433 | 22984302 | ID=MS.gene32181 |
| chr4.4 | mRNA | 22984302 | 22987433 | 22984302 | ID=MS.gene32181.t1;Parent=MS.gene32181 |
| chr4.4 | exon | 22987383 | 22987433 | 22987383 | ID=MS.gene32181.t1.exon1;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22987383 | 22987433 | 22987383 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22987232 | 22987267 | 22987232 | ID=MS.gene32181.t1.exon2;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22987232 | 22987267 | 22987232 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22986899 | 22987003 | 22986899 | ID=MS.gene32181.t1.exon3;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22986899 | 22987003 | 22986899 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22986708 | 22986791 | 22986708 | ID=MS.gene32181.t1.exon4;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22986708 | 22986791 | 22986708 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22986515 | 22986633 | 22986515 | ID=MS.gene32181.t1.exon5;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22986515 | 22986633 | 22986515 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22986241 | 22986342 | 22986241 | ID=MS.gene32181.t1.exon6;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22986241 | 22986342 | 22986241 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22985945 | 22986061 | 22985945 | ID=MS.gene32181.t1.exon7;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22985945 | 22986061 | 22985945 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22985792 | 22985857 | 22985792 | ID=MS.gene32181.t1.exon8;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22985792 | 22985857 | 22985792 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22985462 | 22985528 | 22985462 | ID=MS.gene32181.t1.exon9;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22985462 | 22985528 | 22985462 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22985191 | 22985244 | 22985191 | ID=MS.gene32181.t1.exon10;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22985191 | 22985244 | 22985191 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22984956 | 22985051 | 22984956 | ID=MS.gene32181.t1.exon11;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22984956 | 22985051 | 22984956 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22984483 | 22984521 | 22984483 | ID=MS.gene32181.t1.exon12;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22984483 | 22984521 | 22984483 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| chr4.4 | exon | 22984302 | 22984403 | 22984302 | ID=MS.gene32181.t1.exon13;Parent=MS.gene32181.t1 |
| chr4.4 | CDS | 22984302 | 22984403 | 22984302 | ID=cds.MS.gene32181.t1;Parent=MS.gene32181.t1 |
| Gene Sequence |
| Protein sequence |
