AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32359

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32359.t1 MTR_1g028330 97.484 318 8 0 1 318 1 318 0.0 634
MS.gene32359.t1 MTR_1g028320 63.158 323 110 6 1 318 1 319 5.08e-137 391
MS.gene32359.t1 MTR_3g092110 59.406 303 116 4 19 316 9 309 4.80e-120 347
MS.gene32359.t1 MTR_5g045000 48.347 242 122 3 78 316 18 259 1.14e-77 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32359.t1 AT5G24400 50.654 306 139 4 13 316 30 325 1.14e-100 299
MS.gene32359.t1 AT3G49360 51.230 244 111 3 78 316 11 251 1.02e-81 248
MS.gene32359.t1 AT1G13700 48.361 244 121 3 80 318 20 263 6.84e-80 244
MS.gene32359.t1 AT1G13700 48.361 244 121 3 80 318 20 263 6.84e-80 244
MS.gene32359.t1 AT1G13700 48.361 244 121 3 80 318 20 263 6.84e-80 244
MS.gene32359.t1 AT5G24420 48.819 254 123 3 68 316 1 252 1.23e-77 238
MS.gene32359.t1 AT5G24410 50.000 244 114 3 78 316 17 257 1.23e-75 233

Find 77 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCTTATGCTATTAGATA+TGG 0.219132 1.4:-13633008 MS.gene32359:CDS
AATAGCATAAGATCAAATTT+TGG 0.228100 1.4:+13633016 None:intergenic
TGCTTGTGACCAAACGTCTT+AGG 0.231392 1.4:+13633071 None:intergenic
CATGTAGCTTCTTTGTTTCC+AGG 0.258573 1.4:-13632974 MS.gene32359:CDS
GGAGAGGTCAGCAACATATT+TGG 0.269169 1.4:+13634102 None:intergenic
GGAGCATCTTGCTGTGTCTT+TGG 0.286314 1.4:-13634125 MS.gene32359:CDS
CCACCAACATGAATTCTCTT+AGG 0.287083 1.4:+13634199 None:intergenic
TTGCTATCAACGTGAGTCTT+TGG 0.304718 1.4:+13633404 None:intergenic
ATCCTCTCCGGCGGCGGTTT+AGG 0.307239 1.4:+13632899 None:intergenic
CACTGAATGAGACTGATAAA+TGG 0.310242 1.4:-13632943 MS.gene32359:CDS
AATATTGCAATGGTTGTTAC+TGG 0.335880 1.4:-13632842 MS.gene32359:CDS
TGGACAAGGGTGCTGCTTCA+AGG 0.364070 1.4:-13632715 MS.gene32359:CDS
GAAGATACATTGTGTCTTAG+AGG 0.365315 1.4:+13634229 None:intergenic
GTCATTAGTGTCACCTCAAT+TGG 0.368439 1.4:-13634272 MS.gene32359:CDS
CTGGACCCGTCAAGTATCTA+AGG 0.376988 1.4:-13634033 MS.gene32359:intron
ATAGGAAGCTTATTATCATT+AGG 0.380697 1.4:+13632776 None:intergenic
AACCATTTGATATCTCCTTC+AGG 0.389182 1.4:+13632740 None:intergenic
AGGAGATATCAAATGGTTCT+TGG 0.390569 1.4:-13632735 MS.gene32359:CDS
GATCTTATGCTATTAGATAT+GGG 0.400581 1.4:-13633007 MS.gene32359:CDS
GCTTGTGACCAAACGTCTTA+GGG 0.422653 1.4:+13633072 None:intergenic
TGAGACAACCCTAAGACGTT+TGG 0.427530 1.4:-13633080 MS.gene32359:CDS
TTGTGTTTGTGACTTATGTT+TGG 0.433948 1.4:+13634306 None:intergenic
GTTTACTCTGCACTTGAGAA+AGG 0.447789 1.4:-13632800 MS.gene32359:CDS
CAATCGATAGTGTCACAATA+TGG 0.447946 1.4:+13633467 None:intergenic
AATTCACAATTTCAGGAAGC+TGG 0.451332 1.4:-13633498 MS.gene32359:intron
CTTAGATACTTGACGGGTCC+AGG 0.470356 1.4:+13634034 None:intergenic
AATGTAATCCTCTCCGGCGG+CGG 0.473734 1.4:+13632893 None:intergenic
GCAATGGTTGTTACTGGTGC+TGG 0.481937 1.4:-13632836 MS.gene32359:CDS
TGCTTTGAGGAGTGCATGAA+AGG 0.482552 1.4:+13634338 None:intergenic
TGCTGCTCCATCAGCTGGTA+GGG 0.490513 1.4:+13633111 None:intergenic
TTATCAGTCTCATTCAGTGC+AGG 0.493377 1.4:+13632947 None:intergenic
ATGTAGCTTCTTTGTTTCCA+GGG 0.494234 1.4:-13632973 MS.gene32359:CDS
AAAGAAGCTACATGTCCATC+AGG 0.494933 1.4:+13632983 None:intergenic
CCTAAGAGAATTCATGTTGG+TGG 0.500842 1.4:-13634199 MS.gene32359:CDS
TGCTACTTCAAATATTGCAA+TGG 0.501756 1.4:-13632852 MS.gene32359:CDS
TCATTAGTGTCACCTCAATT+GGG 0.507647 1.4:-13634271 MS.gene32359:CDS
TCATTCAGTGCAGGGTACCC+TGG 0.512835 1.4:+13632956 None:intergenic
ACATCTGCTGCTCCATCAGC+TGG 0.514811 1.4:+13633106 None:intergenic
ACTGAATGAGACTGATAAAT+GGG 0.516875 1.4:-13632942 MS.gene32359:CDS
TCAATTGTGTTCACATTGAG+TGG 0.517319 1.4:+13633139 None:intergenic
TAATAAGCTTCCTATTCAAA+AGG 0.521966 1.4:-13632768 MS.gene32359:CDS
GAGAATTCATGTTGGTGGCT+TGG 0.523036 1.4:-13634194 MS.gene32359:CDS
CTGCTGCTCCATCAGCTGGT+AGG 0.523186 1.4:+13633110 None:intergenic
TTGGAATGCAACATGCTTTG+AGG 0.525769 1.4:+13634325 None:intergenic
ACAATACCTTAGATACTTGA+CGG 0.530977 1.4:+13634027 None:intergenic
TTTGAAGTAGCATTAATCAC+TGG 0.530984 1.4:+13632863 None:intergenic
CTATTAGATATGGGACCTGA+TGG 0.532418 1.4:-13632998 MS.gene32359:CDS
CAATTGTGTTCACATTGAGT+GGG 0.534779 1.4:+13633140 None:intergenic
ATCCTGAAGGAGATATCAAA+TGG 0.537202 1.4:-13632742 MS.gene32359:CDS
TATCAAATGGTTCTTGGACA+AGG 0.539582 1.4:-13632729 MS.gene32359:CDS
GATGATTCCCTACCAGCTGA+TGG 0.545667 1.4:-13633118 MS.gene32359:CDS
TCATGTTGGTGGCTTGGTGA+AGG 0.564204 1.4:-13634188 MS.gene32359:CDS
AATGTAAATGTAATCCTCTC+CGG 0.571855 1.4:+13632887 None:intergenic
TATCAGTCTCATTCAGTGCA+GGG 0.572605 1.4:+13632948 None:intergenic
CAATACCTTAGATACTTGAC+GGG 0.575298 1.4:+13634028 None:intergenic
GCTTTGAGGAGTGCATGAAA+GGG 0.575996 1.4:+13634339 None:intergenic
TCACAATTTCAGGAAGCTGG+TGG 0.578382 1.4:-13633495 MS.gene32359:intron
ATCAAATGGTTCTTGGACAA+GGG 0.578434 1.4:-13632728 MS.gene32359:CDS
TGTGTCTTAGAGGGCTATAG+AGG 0.581993 1.4:+13634239 None:intergenic
ATTCAAAAGGTGAATCCTGA+AGG 0.582947 1.4:-13632755 MS.gene32359:CDS
CACCTAAACCGCCGCCGGAG+AGG 0.588803 1.4:-13632901 MS.gene32359:CDS
TGACACTAATGACATGGTTG+AGG 0.589610 1.4:+13634282 None:intergenic
AAGATACATTGTGTCTTAGA+GGG 0.590300 1.4:+13634230 None:intergenic
CATATTGTGACACTATCGAT+TGG 0.601292 1.4:-13633466 MS.gene32359:CDS
ACACTATCGATTGGTCTAAG+TGG 0.610653 1.4:-13633457 MS.gene32359:CDS
TAACGATAGCTTCATCTCCA+AGG 0.612361 1.4:-13633369 MS.gene32359:intron
GCATGAAAGGGACAGAAATG+TGG 0.619029 1.4:+13634351 None:intergenic
AATTGTGTTCACATTGAGTG+GGG 0.620392 1.4:+13633141 None:intergenic
AAACCTAAGAGAATTCATGT+TGG 0.624267 1.4:-13634202 MS.gene32359:CDS
GAATGCACCTAAACCGCCGC+CGG 0.626616 1.4:-13632906 MS.gene32359:CDS
GGATGTGCATGTGCTAAGCA+AGG 0.627699 1.4:-13634146 MS.gene32359:CDS
ATTGTGTTCACATTGAGTGG+GGG 0.652455 1.4:+13633142 None:intergenic
TCGATAGTGTCACAATATGG+TGG 0.659952 1.4:+13633470 None:intergenic
GTAAATGTAATCCTCTCCGG+CGG 0.716736 1.4:+13632890 None:intergenic
GGCATCAATGAATAACAACA+AGG 0.718422 1.4:-13634167 MS.gene32359:CDS
TTGAGGTGACACTAATGACA+TGG 0.728887 1.4:+13634276 None:intergenic
GGGTCCAGGAGACAAAACGA+CGG 0.806572 1.4:+13634048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACAAAGTTAATTATTT+GGG - chr1.4:13633521-13633540 MS.gene32359:intron 10.0%
!! TTCTTAAATGAAAAATAAAA+TGG - chr1.4:13633459-13633478 MS.gene32359:CDS 10.0%
!! GATTAACAAAGTTAATTATT+TGG - chr1.4:13633520-13633539 MS.gene32359:intron 15.0%
!! TTAAATGAAAAATAAAATGG+TGG - chr1.4:13633462-13633481 MS.gene32359:CDS 15.0%
!!! AATAGCATAAGATCAAATTT+TGG + chr1.4:13634051-13634070 None:intergenic 20.0%
!!! ATAGCATAAGATCAAATTTT+GGG + chr1.4:13634050-13634069 None:intergenic 20.0%
!!! TCATCTTACTCTTTAAAAAA+TGG - chr1.4:13633076-13633095 MS.gene32359:CDS 20.0%
!!! TTTTAAAGAGTAAGATGATA+CGG + chr1.4:13633074-13633093 None:intergenic 20.0%
! AAAAATACATTAGAGAGAAG+GGG - chr1.4:13632986-13633005 MS.gene32359:CDS 25.0%
! AAGTCAAAATATAAGTCTGA+CGG + chr1.4:13633322-13633341 None:intergenic 25.0%
! AATCTTGAATTCACAATTTC+AGG - chr1.4:13633559-13633578 MS.gene32359:intron 25.0%
! ATAGGAAGCTTATTATCATT+AGG + chr1.4:13634291-13634310 None:intergenic 25.0%
! GAAAAATACATTAGAGAGAA+GGG - chr1.4:13632985-13633004 MS.gene32359:CDS 25.0%
! GATCTTATGCTATTAGATAT+GGG - chr1.4:13634057-13634076 MS.gene32359:CDS 25.0%
! TAATAAGCTTCCTATTCAAA+AGG - chr1.4:13634296-13634315 MS.gene32359:CDS 25.0%
! TGATCTTATGCTATTAGATA+TGG - chr1.4:13634056-13634075 MS.gene32359:CDS 25.0%
! TGTCATTAATGACAAGTAAA+TGG - chr1.4:13633127-13633146 MS.gene32359:CDS 25.0%
! TTACATCGTCAAATAAATGA+TGG + chr1.4:13633805-13633824 None:intergenic 25.0%
! TTTAAAGAGTAAGATGATAC+GGG + chr1.4:13633073-13633092 None:intergenic 25.0%
!! ATTTATTGCCAATTTTGCTA+GGG + chr1.4:13633426-13633445 None:intergenic 25.0%
!! CTTCTCTCTAATGTATTTTT+CGG + chr1.4:13632986-13633005 None:intergenic 25.0%
!! TATTTATTGCCAATTTTGCT+AGG + chr1.4:13633427-13633446 None:intergenic 25.0%
!!! AAATTTTGGGAAGTTAGTTA+GGG + chr1.4:13634037-13634056 None:intergenic 25.0%
AAACCTAAGAGAATTCATGT+TGG - chr1.4:13632862-13632881 MS.gene32359:CDS 30.0%
AAGATACATTGTGTCTTAGA+GGG + chr1.4:13632837-13632856 None:intergenic 30.0%
AATATTGCAATGGTTGTTAC+TGG - chr1.4:13634222-13634241 MS.gene32359:CDS 30.0%
AATGTAAATGTAATCCTCTC+CGG + chr1.4:13634180-13634199 None:intergenic 30.0%
ACAATACCTTAGATACTTGA+CGG + chr1.4:13633040-13633059 None:intergenic 30.0%
ACTGAATGAGACTGATAAAT+GGG - chr1.4:13634122-13634141 MS.gene32359:CDS 30.0%
CGAAAAATACATTAGAGAGA+AGG - chr1.4:13632984-13633003 MS.gene32359:CDS 30.0%
CTAAGTCACATTGTTGTATT+TGG - chr1.4:13633887-13633906 MS.gene32359:intron 30.0%
TTGTGTTTGTGACTTATGTT+TGG + chr1.4:13632761-13632780 None:intergenic 30.0%
! AATAAATGATGGTTTGTGAC+TGG + chr1.4:13633794-13633813 None:intergenic 30.0%
! TCATATTTTATCGTGTACCT+TGG + chr1.4:13633715-13633734 None:intergenic 30.0%
! TGCTACTTCAAATATTGCAA+TGG - chr1.4:13634212-13634231 MS.gene32359:CDS 30.0%
! TTTGAAGTAGCATTAATCAC+TGG + chr1.4:13634204-13634223 None:intergenic 30.0%
!! AGTTCAAGAGTACGATTTTA+GGG + chr1.4:13633228-13633247 None:intergenic 30.0%
!! CAAATTTTGGGAAGTTAGTT+AGG + chr1.4:13634038-13634057 None:intergenic 30.0%
AACAGTAAGCACCTAGTTAA+TGG - chr1.4:13633274-13633293 MS.gene32359:intron 35.0%
AACCATTTGATATCTCCTTC+AGG + chr1.4:13634327-13634346 None:intergenic 35.0%
AATTCACAATTTCAGGAAGC+TGG - chr1.4:13633566-13633585 MS.gene32359:intron 35.0%
AATTGTGTTCACATTGAGTG+GGG + chr1.4:13633926-13633945 None:intergenic 35.0%
AGGAGATATCAAATGGTTCT+TGG - chr1.4:13634329-13634348 MS.gene32359:CDS 35.0%
ATCAAATGGTTCTTGGACAA+GGG - chr1.4:13634336-13634355 MS.gene32359:CDS 35.0%
ATCCTGAAGGAGATATCAAA+TGG - chr1.4:13634322-13634341 MS.gene32359:CDS 35.0%
ATTCAAAAGGTGAATCCTGA+AGG - chr1.4:13634309-13634328 MS.gene32359:CDS 35.0%
CAATACCTTAGATACTTGAC+GGG + chr1.4:13633039-13633058 None:intergenic 35.0%
CAATCGATAGTGTCACAATA+TGG + chr1.4:13633600-13633619 None:intergenic 35.0%
CAATTGTGTTCACATTGAGT+GGG + chr1.4:13633927-13633946 None:intergenic 35.0%
CACTGAATGAGACTGATAAA+TGG - chr1.4:13634121-13634140 MS.gene32359:CDS 35.0%
CATATTGTGACACTATCGAT+TGG - chr1.4:13633598-13633617 MS.gene32359:intron 35.0%
GAAGATACATTGTGTCTTAG+AGG + chr1.4:13632838-13632857 None:intergenic 35.0%
GGCATCAATGAATAACAACA+AGG - chr1.4:13632897-13632916 MS.gene32359:CDS 35.0%
GTCACATTGTTGTATTTGGA+AGG - chr1.4:13633891-13633910 MS.gene32359:intron 35.0%
TAGTAGAGTTGAAATCTCCT+CGG + chr1.4:13633159-13633178 None:intergenic 35.0%
TATCAAATGGTTCTTGGACA+AGG - chr1.4:13634335-13634354 MS.gene32359:CDS 35.0%
TCAATTGTGTTCACATTGAG+TGG + chr1.4:13633928-13633947 None:intergenic 35.0%
TCATTAGTGTCACCTCAATT+GGG - chr1.4:13632793-13632812 MS.gene32359:CDS 35.0%
! AGTCGAGATTTTCAGCTATT+TGG - chr1.4:13633400-13633419 MS.gene32359:CDS 35.0%
! ATGTAGCTTCTTTGTTTCCA+GGG - chr1.4:13634091-13634110 MS.gene32359:CDS 35.0%
! GTCTAAGTGGCACATATTTT+TGG - chr1.4:13633620-13633639 MS.gene32359:intron 35.0%
! TCAGGATTCACCTTTTGAAT+AGG + chr1.4:13634309-13634328 None:intergenic 35.0%
!! CTCTAATGTATTTTTCGGAG+AGG + chr1.4:13632981-13633000 None:intergenic 35.0%
!! GAGTTCAAGAGTACGATTTT+AGG + chr1.4:13633229-13633248 None:intergenic 35.0%
!! TACTGTTTTTCATGATCGCA+TGG + chr1.4:13633261-13633280 None:intergenic 35.0%
AAAGAAGCTACATGTCCATC+AGG + chr1.4:13634084-13634103 None:intergenic 40.0%
ACGATTGAGCTCCATTAACT+AGG + chr1.4:13633288-13633307 None:intergenic 40.0%
AGTTAATGGAGCTCAATCGT+TGG - chr1.4:13633288-13633307 MS.gene32359:intron 40.0%
ATTGTGTTCACATTGAGTGG+GGG + chr1.4:13633925-13633944 None:intergenic 40.0%
CCACCAACATGAATTCTCTT+AGG + chr1.4:13632868-13632887 None:intergenic 40.0%
CCTAAGAGAATTCATGTTGG+TGG - chr1.4:13632865-13632884 MS.gene32359:CDS 40.0%
CTATTAGATATGGGACCTGA+TGG - chr1.4:13634066-13634085 MS.gene32359:CDS 40.0%
CTATTTGGCCCTAGCAAAAT+TGG - chr1.4:13633415-13633434 MS.gene32359:CDS 40.0%
GTCATTAGTGTCACCTCAAT+TGG - chr1.4:13632792-13632811 MS.gene32359:CDS 40.0%
GTTTACTCTGCACTTGAGAA+AGG - chr1.4:13634264-13634283 MS.gene32359:CDS 40.0%
TAACGATAGCTTCATCTCCA+AGG - chr1.4:13633695-13633714 MS.gene32359:intron 40.0%
TATCAGTCTCATTCAGTGCA+GGG + chr1.4:13634119-13634138 None:intergenic 40.0%
TCGATAGTGTCACAATATGG+TGG + chr1.4:13633597-13633616 None:intergenic 40.0%
TGACACTAATGACATGGTTG+AGG + chr1.4:13632785-13632804 None:intergenic 40.0%
TTATCAGTCTCATTCAGTGC+AGG + chr1.4:13634120-13634139 None:intergenic 40.0%
TTGAGGTGACACTAATGACA+TGG + chr1.4:13632791-13632810 None:intergenic 40.0%
TTGCTATCAACGTGAGTCTT+TGG + chr1.4:13633663-13633682 None:intergenic 40.0%
TTGGAATGCAACATGCTTTG+AGG + chr1.4:13632742-13632761 None:intergenic 40.0%
! CATGTAGCTTCTTTGTTTCC+AGG - chr1.4:13634090-13634109 MS.gene32359:CDS 40.0%
!! ACACTATCGATTGGTCTAAG+TGG - chr1.4:13633607-13633626 MS.gene32359:intron 40.0%
!! AGGTGTTTTTGTCCCAATTG+AGG + chr1.4:13632808-13632827 None:intergenic 40.0%
!!! GAGTACGATTTTAGGGTCTT+AGG + chr1.4:13633221-13633240 None:intergenic 40.0%
AATGGAGCTCAATCGTTGGA+TGG - chr1.4:13633292-13633311 MS.gene32359:intron 45.0%
CAAGTAAATGGCTATCTCCG+AGG - chr1.4:13633139-13633158 MS.gene32359:CDS 45.0%
GCATGAAAGGGACAGAAATG+TGG + chr1.4:13632716-13632735 None:intergenic 45.0%
GCTTGTGACCAAACGTCTTA+GGG + chr1.4:13633995-13634014 None:intergenic 45.0%
GGAGAGGTCAGCAACATATT+TGG + chr1.4:13632965-13632984 None:intergenic 45.0%
GTAAATGTAATCCTCTCCGG+CGG + chr1.4:13634177-13634196 None:intergenic 45.0%
TCACAATTTCAGGAAGCTGG+TGG - chr1.4:13633569-13633588 MS.gene32359:intron 45.0%
TGAGACAACCCTAAGACGTT+TGG - chr1.4:13633984-13634003 MS.gene32359:intron 45.0%
TGCTTGTGACCAAACGTCTT+AGG + chr1.4:13633996-13634015 None:intergenic 45.0%
TGTGTCTTAGAGGGCTATAG+AGG + chr1.4:13632828-13632847 None:intergenic 45.0%
TTAGGTGTTAGCTCAGTGCT+CGG + chr1.4:13633203-13633222 None:intergenic 45.0%
TTCACATTGAGTGGGGGAAT+TGG + chr1.4:13633919-13633938 None:intergenic 45.0%
!! GAGAATTCATGTTGGTGGCT+TGG - chr1.4:13632870-13632889 MS.gene32359:CDS 45.0%
!! GCTTTGAGGAGTGCATGAAA+GGG + chr1.4:13632728-13632747 None:intergenic 45.0%
!! TGCTTTGAGGAGTGCATGAA+AGG + chr1.4:13632729-13632748 None:intergenic 45.0%
CTGGACCCGTCAAGTATCTA+AGG - chr1.4:13633031-13633050 MS.gene32359:CDS 50.0%
GATGATTCCCTACCAGCTGA+TGG - chr1.4:13633946-13633965 MS.gene32359:intron 50.0%
GCAATGGTTGTTACTGGTGC+TGG - chr1.4:13634228-13634247 MS.gene32359:CDS 50.0%
GGATGTGCATGTGCTAAGCA+AGG - chr1.4:13632918-13632937 MS.gene32359:CDS 50.0%
! CTTAGATACTTGACGGGTCC+AGG + chr1.4:13633033-13633052 None:intergenic 50.0%
! GGAGCATCTTGCTGTGTCTT+TGG - chr1.4:13632939-13632958 MS.gene32359:CDS 50.0%
!! TCATGTTGGTGGCTTGGTGA+AGG - chr1.4:13632876-13632895 MS.gene32359:CDS 50.0%
!! TTCACCGTCGTTTTGTCTCC+TGG - chr1.4:13633012-13633031 MS.gene32359:CDS 50.0%
AATGTAATCCTCTCCGGCGG+CGG + chr1.4:13634174-13634193 None:intergenic 55.0%
ACATCTGCTGCTCCATCAGC+TGG + chr1.4:13633961-13633980 None:intergenic 55.0%
GGGTCCAGGAGACAAAACGA+CGG + chr1.4:13633019-13633038 None:intergenic 55.0%
TGCTGCTCCATCAGCTGGTA+GGG + chr1.4:13633956-13633975 None:intergenic 55.0%
! TCATTCAGTGCAGGGTACCC+TGG + chr1.4:13634111-13634130 None:intergenic 55.0%
!! TGGACAAGGGTGCTGCTTCA+AGG - chr1.4:13634349-13634368 MS.gene32359:CDS 55.0%
CTGCTGCTCCATCAGCTGGT+AGG + chr1.4:13633957-13633976 None:intergenic 60.0%
GAATGCACCTAAACCGCCGC+CGG - chr1.4:13634158-13634177 MS.gene32359:CDS 60.0%
ATCCTCTCCGGCGGCGGTTT+AGG + chr1.4:13634168-13634187 None:intergenic 65.0%
CACCTAAACCGCCGCCGGAG+AGG - chr1.4:13634163-13634182 MS.gene32359:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 13632703 13634383 13632703 ID=MS.gene32359
chr1.4 mRNA 13632703 13634383 13632703 ID=MS.gene32359.t1;Parent=MS.gene32359
chr1.4 exon 13634034 13634383 13634034 ID=MS.gene32359.t1.exon1;Parent=MS.gene32359.t1
chr1.4 CDS 13634034 13634383 13634034 ID=cds.MS.gene32359.t1;Parent=MS.gene32359.t1
chr1.4 exon 13633370 13633505 13633370 ID=MS.gene32359.t1.exon2;Parent=MS.gene32359.t1
chr1.4 CDS 13633370 13633505 13633370 ID=cds.MS.gene32359.t1;Parent=MS.gene32359.t1
chr1.4 exon 13632703 13633173 13632703 ID=MS.gene32359.t1.exon3;Parent=MS.gene32359.t1
chr1.4 CDS 13632703 13633173 13632703 ID=cds.MS.gene32359.t1;Parent=MS.gene32359.t1
Gene Sequence

>MS.gene32359

ATGGCTACTTCCACATTTCTGTCCCTTTCATGCACTCCTCAAAGCATGTTGCATTCCAAACATAAGTCACAAACACAATCCTCAACCATGTCATTAGTGTCACCTCAATTGGGACAAAAACACCTCTATAGCCCTCTAAGACACAATGTATCTTCTTTGAAACCTAAGAGAATTCATGTTGGTGGCTTGGTGAAGGCATCAATGAATAACAACAAGGATGTGCATGTGCTAAGCAAGGAGCATCTTGCTGTGTCTTTGGCCAAATATGTTGCTGACCTCTCCGAAAAATACATTAGAGAGAAGGGGTGTTTCACCGTCGTTTTGTCTCCTGGACCCGTCAAGTATCTAAGGTATTGTTTCATTTTTTCCCGTATCATCTTACTCTTTAAAAAATGGATAGATGAGAAATTAATACTAATTTAAGTGTCATTAATGACAAGTAAATGGCTATCTCCGAGGAGATTTCAACTCTACTATTGAGATTACAACTTGAAACTCCGAGCACTGAGCTAACACCTAAGACCCTAAAATCGTACTCTTGAACTCAAATTAATTCCATGCGATCATGAAAAACAGTAAGCACCTAGTTAATGGAGCTCAATCGTTGGATGGAAATCCGTCAGACTTATATTTTGACTTCGTTTAATGAGCTTTAAGATACATTTTTGAAATACAAATTATTTGAATTTCATGTAATAGTCGAGATTTTCAGCTATTTGGCCCTAGCAAAATTGGCAATAAATAGAAACTTTTTCATTCTTAAATGAAAAATAAAATGGTGGTAACAAGTGATTATCACATGTAAAGTAAGTATAAAGATTAACAAAGTTAATTATTTGGGAAATTCAATATTTGAAATCTTGAATTCACAATTTCAGGAAGCTGGTGGAACCACCATATTGTGACACTATCGATTGGTCTAAGTGGCACATATTTTTGGTTGATGAGAGAGTAGTGCCAAAGACTCACGTTGATAGCAATTACAAACTTGCTAACGATAGCTTCATCTCCAAGGTACACGATAAAATATGATTGAATGTTTGTGTAAGACTTTTTCATCGTTAACTTTGATTTACGTATATTGTCAACCAGTCACAAACCATCATTTATTTGACGATGTAAAAAAAATATTTACATCGTCATTTTATATACACATTTAACGAACTAATTAGAAATCATTAGAACTAAGTCACATTGTTGTATTTGGAAGGTACCAATTCCCCCACTCAATGTGAACACAATTGATGATTCCCTACCAGCTGATGGAGCAGCAGATGTTTATGAGACAACCCTAAGACGTTTGGTCACAAGCAATGTGATATCAAAATCATCCCTAACTAACTTCCCAAAATTTGATCTTATGCTATTAGATATGGGACCTGATGGACATGTAGCTTCTTTGTTTCCAGGGTACCCTGCACTGAATGAGACTGATAAATGGGTTACATATCTTAAGAATGCACCTAAACCGCCGCCGGAGAGGATTACATTTACATTGCCAGTGATTAATGCTACTTCAAATATTGCAATGGTTGTTACTGGTGCTGGTAAAGCTGATGCTGTTTACTCTGCACTTGAGAAAGGTCCTAATGATAATAAGCTTCCTATTCAAAAGGTGAATCCTGAAGGAGATATCAAATGGTTCTTGGACAAGGGTGCTGCTTCAAGGCTCTATAGATAG
Protein sequence

>MS.gene32359.t1

MATSTFLSLSCTPQSMLHSKHKSQTQSSTMSLVSPQLGQKHLYSPLRHNVSSLKPKRIHVGGLVKASMNNNKDVHVLSKEHLAVSLAKYVADLSEKYIREKGCFTVVLSPGPVKYLRKLVEPPYCDTIDWSKWHIFLVDERVVPKTHVDSNYKLANDSFISKVPIPPLNVNTIDDSLPADGAADVYETTLRRLVTSNVISKSSLTNFPKFDLMLLDMGPDGHVASLFPGYPALNETDKWVTYLKNAPKPPPERITFTLPVINATSNIAMVVTGAGKADAVYSALEKGPNDNKLPIQKVNPEGDIKWFLDKGAASRLYR