Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32453.t1 | XP_003588386.2 | 96.1 | 155 | 6 | 0 | 1 | 155 | 1 | 155 | 9.40E-79 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32453.t1 | Q8RXH2 | 51.3 | 152 | 67 | 4 | 9 | 155 | 11 | 160 | 1.8e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32453.t1 | G7IB50 | 96.1 | 155 | 6 | 0 | 1 | 155 | 1 | 155 | 6.8e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene32453 | 0.820022 | 8.54E-53 | -1.69E-46 |
| MS.gene052358 | MS.gene32453 | 0.800745 | 1.25E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene32453 | 0.804589 | 2.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32453.t1 | MTR_1g006690 | 96.129 | 155 | 6 | 0 | 1 | 155 | 1 | 155 | 1.60e-101 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32453.t1 | AT4G32910 | 51.316 | 152 | 67 | 4 | 9 | 155 | 11 | 160 | 2.50e-40 | 143 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACCTTAACAATTTCATT+TGG | 0.305958 | 1.4:-12248210 | None:intergenic |
| GTTCCGTTGTCGACGGTGTT+GGG | 0.320387 | 1.4:-12246660 | None:intergenic |
| TCATTTGGGTCTTCAATAAT+CGG | 0.326782 | 1.4:-12248195 | None:intergenic |
| TTTCGCCGGAGAATGGGATT+AGG | 0.367192 | 1.4:-12246683 | None:intergenic |
| TTGTTGGTTTCGCCGGAGAA+TGG | 0.370686 | 1.4:-12246690 | None:intergenic |
| GTACCTTAACAATTTCATTT+GGG | 0.391570 | 1.4:-12248209 | None:intergenic |
| GGTTCCGTTGTCGACGGTGT+TGG | 0.395020 | 1.4:-12246661 | None:intergenic |
| TTCGCCGGAGAATGGGATTA+GGG | 0.395335 | 1.4:-12246682 | None:intergenic |
| TTATCTCCTTGCTATATTGA+AGG | 0.410951 | 1.4:-12248137 | None:intergenic |
| GAGATTGCGAGGCGAGAGAC+TGG | 0.414769 | 1.4:-12246756 | None:intergenic |
| TGTTGGTTTCGCCGGAGAAT+GGG | 0.423799 | 1.4:-12246689 | None:intergenic |
| CTTCTACGTATCAGTTAGAT+TGG | 0.423908 | 1.4:+12246994 | MS.gene32453:CDS |
| AGACCCAAATGAAATTGTTA+AGG | 0.438019 | 1.4:+12248206 | MS.gene32453:CDS |
| GGGTCTTCAATAATCGGACT+AGG | 0.455946 | 1.4:-12248189 | None:intergenic |
| TTGAGAGGGTTCTGCGAAAA+GGG | 0.457568 | 1.4:-12246808 | None:intergenic |
| AGACTGGACGGGTGAGGTTG+TGG | 0.459559 | 1.4:-12246740 | None:intergenic |
| TTCCGTTGTCGACGGTGTTG+GGG | 0.462046 | 1.4:-12246659 | None:intergenic |
| CAATCTAACTGATACGTAGA+AGG | 0.467504 | 1.4:-12246993 | None:intergenic |
| TTTGAGAGGGTTCTGCGAAA+AGG | 0.472770 | 1.4:-12246809 | None:intergenic |
| CCCTCTCAAACCTCCGATGC+CGG | 0.476944 | 1.4:+12246822 | MS.gene32453:CDS |
| TCTCTCGCCTCGCAATCTCC+TGG | 0.481211 | 1.4:+12246760 | MS.gene32453:CDS |
| GCTTCTCGTATGGCCAAAGT+TGG | 0.481940 | 1.4:+12248164 | MS.gene32453:CDS |
| GGGTGAGGTTGTGGTGGAGA+GGG | 0.484691 | 1.4:-12246731 | None:intergenic |
| CGGGTGAGGTTGTGGTGGAG+AGG | 0.485435 | 1.4:-12246732 | None:intergenic |
| CTTAGCGCCGTCTCCGGCAT+CGG | 0.487035 | 1.4:-12246835 | None:intergenic |
| ATCGGACTAGGGCCCAACTT+TGG | 0.488711 | 1.4:-12248177 | None:intergenic |
| GAGGGAGTTGCCGCGGGACC+AGG | 0.495115 | 1.4:-12246778 | None:intergenic |
| GACGCGGAGGGAGTTGCCGC+GGG | 0.496115 | 1.4:-12246784 | None:intergenic |
| CGACTCTGAAGCAACGCAAA+CGG | 0.501415 | 1.4:-12246939 | None:intergenic |
| AGAATTGTTGTTGGTTTCGC+CGG | 0.503079 | 1.4:-12246697 | None:intergenic |
| CGGAGATTGATGATGCTGAT+TGG | 0.511466 | 1.4:+12246889 | MS.gene32453:CDS |
| TAAGCTCGGAGGTGGAGATC+CGG | 0.518121 | 1.4:+12246869 | MS.gene32453:CDS |
| ATCGAAGTTAAGCTCGGAGG+TGG | 0.533414 | 1.4:+12246861 | MS.gene32453:CDS |
| GATTGGCGAAGAATTGCATA+TGG | 0.534205 | 1.4:+12246906 | MS.gene32453:CDS |
| CAATCAGCATCATCAATCTC+CGG | 0.538504 | 1.4:-12246888 | None:intergenic |
| GATAACCTTAGCGCCGTCTC+CGG | 0.547965 | 1.4:-12246841 | None:intergenic |
| CTTCTCGTATGGCCAAAGTT+GGG | 0.548461 | 1.4:+12248165 | MS.gene32453:CDS |
| TTGCGTTGCTTCAGAGTCGC+CGG | 0.548587 | 1.4:+12246943 | MS.gene32453:CDS |
| GATTGCGAGAGAATTGTTGT+TGG | 0.550735 | 1.4:-12246706 | None:intergenic |
| GGCGAGAGACTGGACGGGTG+AGG | 0.552042 | 1.4:-12246746 | None:intergenic |
| AGATAACATCGCTTCTCGTA+TGG | 0.554244 | 1.4:+12248154 | MS.gene32453:CDS |
| TCCGGCATCGGAGGTTTGAG+AGG | 0.555047 | 1.4:-12246823 | None:intergenic |
| AGACGCGGAGGGAGTTGCCG+CGG | 0.572276 | 1.4:-12246785 | None:intergenic |
| GGTCTTCAATAATCGGACTA+GGG | 0.584981 | 1.4:-12248188 | None:intergenic |
| CGATGCCGGAGACGGCGCTA+AGG | 0.585070 | 1.4:+12246836 | MS.gene32453:CDS |
| GATTAGGGTTCCGTTGTCGA+CGG | 0.593798 | 1.4:-12246667 | None:intergenic |
| AGCGCCGTCTCCGGCATCGG+AGG | 0.594499 | 1.4:-12246832 | None:intergenic |
| CTCGCAATCTCCTGGTCCCG+CGG | 0.594689 | 1.4:+12246768 | MS.gene32453:CDS |
| TTGCGAGGCGAGAGACTGGA+CGG | 0.595844 | 1.4:-12246752 | None:intergenic |
| GGAACCCTAATCCCATTCTC+CGG | 0.597230 | 1.4:+12246678 | MS.gene32453:CDS |
| CAAACCTCCGATGCCGGAGA+CGG | 0.600136 | 1.4:+12246828 | MS.gene32453:CDS |
| CCGGCATCGGAGGTTTGAGA+GGG | 0.600200 | 1.4:-12246822 | None:intergenic |
| CTGGACGGGTGAGGTTGTGG+TGG | 0.600961 | 1.4:-12246737 | None:intergenic |
| CGCGGGACCAGGAGATTGCG+AGG | 0.602510 | 1.4:-12246767 | None:intergenic |
| ACATAGAAGAAATCGCACTC+CGG | 0.611098 | 1.4:-12246962 | None:intergenic |
| TGCGAAAAGGGAGACGCGGA+GGG | 0.611385 | 1.4:-12246796 | None:intergenic |
| CTGCGAAAAGGGAGACGCGG+AGG | 0.611997 | 1.4:-12246797 | None:intergenic |
| TGCGAGGCGAGAGACTGGAC+GGG | 0.618389 | 1.4:-12246751 | None:intergenic |
| TCCGTTGTCGACGGTGTTGG+GGG | 0.620804 | 1.4:-12246658 | None:intergenic |
| AAGGTTATCGAAGTTAAGCT+CGG | 0.635323 | 1.4:+12246855 | MS.gene32453:CDS |
| GCATGTCCTTCAATATAGCA+AGG | 0.645616 | 1.4:+12248131 | MS.gene32453:CDS |
| GTTCTGCGAAAAGGGAGACG+CGG | 0.721849 | 1.4:-12246800 | None:intergenic |
| GTTATCGAAGTTAAGCTCGG+AGG | 0.743966 | 1.4:+12246858 | MS.gene32453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAAATTATAATATTAG+AGG | + | chr1.4:12247535-12247554 | MS.gene32453:intron | 10.0% |
| !! | TTAGAAATTATAATATTAGA+GGG | + | chr1.4:12247536-12247555 | MS.gene32453:intron | 10.0% |
| !!! | TTATATTTGTTTTACAAATT+AGG | + | chr1.4:12248103-12248122 | MS.gene32453:intron | 10.0% |
| !! | TCAATTTATCAAATTATTAC+CGG | - | chr1.4:12247077-12247096 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTGAAATTCTTA+TGG | + | chr1.4:12247173-12247192 | MS.gene32453:intron | 15.0% |
| !!! | TTAATTTGCTAATTTGATTT+AGG | + | chr1.4:12247406-12247425 | MS.gene32453:intron | 15.0% |
| !!! | TTTCAATTTGAAATTCTTAT+GGG | + | chr1.4:12247174-12247193 | MS.gene32453:intron | 15.0% |
| !!! | TTTTTTATTCATCGAAATTT+GGG | + | chr1.4:12247926-12247945 | MS.gene32453:intron | 15.0% |
| !!! | TTTTTTTATTCATCGAAATT+TGG | + | chr1.4:12247925-12247944 | MS.gene32453:intron | 15.0% |
| !! | TTTCAATTATAATGTGTTGT+TGG | + | chr1.4:12247364-12247383 | MS.gene32453:intron | 20.0% |
| !!! | AACCAGTAATAATAAGATTT+TGG | + | chr1.4:12248031-12248050 | MS.gene32453:intron | 20.0% |
| !!! | ACCAGTAATAATAAGATTTT+GGG | + | chr1.4:12248032-12248051 | MS.gene32453:intron | 20.0% |
| !!! | ATTTGTTTTACAAATTAGGT+GGG | + | chr1.4:12248107-12248126 | MS.gene32453:intron | 20.0% |
| !!! | TAAATGTATTTTACTATGCT+TGG | + | chr1.4:12247105-12247124 | MS.gene32453:intron | 20.0% |
| !!! | TATTTGTTTTACAAATTAGG+TGG | + | chr1.4:12248106-12248125 | MS.gene32453:intron | 20.0% |
| !!! | TTCAATTTGAAATTCTTATG+GGG | + | chr1.4:12247175-12247194 | MS.gene32453:intron | 20.0% |
| ! | AAAAATTAAAACCAGAGATC+AGG | - | chr1.4:12247909-12247928 | None:intergenic | 25.0% |
| ! | ACCCAAAATCTTATTATTAC+TGG | - | chr1.4:12248036-12248055 | None:intergenic | 25.0% |
| ! | AGATATAGACATTAATGAGT+TGG | + | chr1.4:12247721-12247740 | MS.gene32453:intron | 25.0% |
| ! | TGATGTATGATAGAACATTA+TGG | + | chr1.4:12247753-12247772 | MS.gene32453:intron | 25.0% |
| TATAATATTAGAGGGAGAGT+TGG | + | chr1.4:12247544-12247563 | MS.gene32453:intron | 30.0% | |
| TCATTTGGGTCTTCAATAAT+CGG | - | chr1.4:12248198-12248217 | None:intergenic | 30.0% | |
| ! | CTTTCTCTTATAGCTTTTCT+AGG | - | chr1.4:12247703-12247722 | None:intergenic | 30.0% |
| ! | GTTGTTGATATGTTTTTCGT+TGG | + | chr1.4:12247826-12247845 | MS.gene32453:intron | 30.0% |
| ! | TTATCTCCTTGCTATATTGA+AGG | - | chr1.4:12248140-12248159 | None:intergenic | 30.0% |
| AAACTAAGCATAGGTGGTTT+AGG | + | chr1.4:12247593-12247612 | MS.gene32453:intron | 35.0% | |
| AAGGTTATCGAAGTTAAGCT+CGG | + | chr1.4:12246855-12246874 | MS.gene32453:CDS | 35.0% | |
| CAATCTAACTGATACGTAGA+AGG | - | chr1.4:12246996-12247015 | None:intergenic | 35.0% | |
| CTTCTACGTATCAGTTAGAT+TGG | + | chr1.4:12246994-12247013 | MS.gene32453:CDS | 35.0% | |
| GAAATTCTTACATTGAGACG+TGG | + | chr1.4:12247048-12247067 | MS.gene32453:intron | 35.0% | |
| ! | AATGTGTTGTTGGATTTGCT+TGG | + | chr1.4:12247374-12247393 | MS.gene32453:intron | 35.0% |
| AACTATGTGTGTCTCAGTGT+CGG | + | chr1.4:12247284-12247303 | MS.gene32453:intron | 40.0% | |
| ACATAGAAGAAATCGCACTC+CGG | - | chr1.4:12246965-12246984 | None:intergenic | 40.0% | |
| AGATAACATCGCTTCTCGTA+TGG | + | chr1.4:12248154-12248173 | MS.gene32453:CDS | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr1.4:12247645-12247664 | MS.gene32453:intron | 40.0% | |
| CAATCAGCATCATCAATCTC+CGG | - | chr1.4:12246891-12246910 | None:intergenic | 40.0% | |
| GATTGCGAGAGAATTGTTGT+TGG | - | chr1.4:12246709-12246728 | None:intergenic | 40.0% | |
| GATTGGCGAAGAATTGCATA+TGG | + | chr1.4:12246906-12246925 | MS.gene32453:CDS | 40.0% | |
| GCATGTCCTTCAATATAGCA+AGG | + | chr1.4:12248131-12248150 | MS.gene32453:CDS | 40.0% | |
| GGTCTTCAATAATCGGACTA+GGG | - | chr1.4:12248191-12248210 | None:intergenic | 40.0% | |
| TGAAATTCTGTCCTGATCTC+TGG | + | chr1.4:12247895-12247914 | MS.gene32453:intron | 40.0% | |
| TTAGCCTAACCTCATTGCAA+GGG | + | chr1.4:12247950-12247969 | MS.gene32453:intron | 40.0% | |
| TTTAGCCTAACCTCATTGCA+AGG | + | chr1.4:12247949-12247968 | MS.gene32453:intron | 40.0% | |
| ! | GAAAGCACAGTGATTTCAAG+AGG | - | chr1.4:12247979-12247998 | None:intergenic | 40.0% |
| ! | TGTGTGCACTTGTTGACAAT+AGG | + | chr1.4:12248079-12248098 | MS.gene32453:intron | 40.0% |
| !! | AGAATTGTTGTTGGTTTCGC+CGG | - | chr1.4:12246700-12246719 | None:intergenic | 40.0% |
| !! | GACTTGCTGATTCTGTAGTA+AGG | + | chr1.4:12247629-12247648 | MS.gene32453:intron | 40.0% |
| !! | TTTGGGTTGACAATCATGTG+CGG | + | chr1.4:12248049-12248068 | MS.gene32453:intron | 40.0% |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr1.4:12247648-12247667 | MS.gene32453:intron | 45.0% | |
| AGCAGGACATGTAGTAAGGA+TGG | + | chr1.4:12247567-12247586 | MS.gene32453:intron | 45.0% | |
| AGGACATGTAGTAAGGATGG+TGG | + | chr1.4:12247570-12247589 | MS.gene32453:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | chr1.4:12247649-12247668 | MS.gene32453:intron | 45.0% | |
| CTTCTCGTATGGCCAAAGTT+GGG | + | chr1.4:12248165-12248184 | MS.gene32453:CDS | 45.0% | |
| GGGTCTTCAATAATCGGACT+AGG | - | chr1.4:12248192-12248211 | None:intergenic | 45.0% | |
| GTATCCCTTGCAATGAGGTT+AGG | - | chr1.4:12247957-12247976 | None:intergenic | 45.0% | |
| GTTATCGAAGTTAAGCTCGG+AGG | + | chr1.4:12246858-12246877 | MS.gene32453:CDS | 45.0% | |
| TGGTGGAAACTAAGCATAGG+TGG | + | chr1.4:12247587-12247606 | MS.gene32453:intron | 45.0% | |
| TTACATTGAGACGTGGACAC+CGG | + | chr1.4:12247055-12247074 | MS.gene32453:intron | 45.0% | |
| TTGAGAGGGTTCTGCGAAAA+GGG | - | chr1.4:12246811-12246830 | None:intergenic | 45.0% | |
| TTGGAGCAGGACATGTAGTA+AGG | + | chr1.4:12247563-12247582 | MS.gene32453:intron | 45.0% | |
| TTTGAGAGGGTTCTGCGAAA+AGG | - | chr1.4:12246812-12246831 | None:intergenic | 45.0% | |
| ! | AGTGCCTTCAATCTGAAGTC+TGG | + | chr1.4:12247315-12247334 | MS.gene32453:intron | 45.0% |
| ! | GTGCCTTCAATCTGAAGTCT+GGG | + | chr1.4:12247316-12247335 | MS.gene32453:intron | 45.0% |
| ! | GTGCCTTCAATCTGAAGTGT+CGG | + | chr1.4:12247127-12247146 | MS.gene32453:intron | 45.0% |
| !! | AAGAGGTATCCCTTGCAATG+AGG | - | chr1.4:12247962-12247981 | None:intergenic | 45.0% |
| !! | CGGAGATTGATGATGCTGAT+TGG | + | chr1.4:12246889-12246908 | MS.gene32453:CDS | 45.0% |
| !! | GGATGGTGGAAACTAAGCAT+AGG | + | chr1.4:12247584-12247603 | MS.gene32453:intron | 45.0% |
| ACTAAGTGGGGTAGGCAACA+TGG | - | chr1.4:12247790-12247809 | None:intergenic | 50.0% | |
| ATCGAAGTTAAGCTCGGAGG+TGG | + | chr1.4:12246861-12246880 | MS.gene32453:CDS | 50.0% | |
| ATGTTGCCTACCCCACTTAG+TGG | + | chr1.4:12247789-12247808 | MS.gene32453:intron | 50.0% | |
| ATTAGAGGGAGAGTTGGAGC+AGG | + | chr1.4:12247550-12247569 | MS.gene32453:intron | 50.0% | |
| GATTAGGGTTCCGTTGTCGA+CGG | - | chr1.4:12246670-12246689 | None:intergenic | 50.0% | |
| GCACCCAGACTTCAGATTGA+AGG | - | chr1.4:12247322-12247341 | None:intergenic | 50.0% | |
| GCTTCTCGTATGGCCAAAGT+TGG | + | chr1.4:12248164-12248183 | MS.gene32453:CDS | 50.0% | |
| GGAACCCTAATCCCATTCTC+CGG | + | chr1.4:12246678-12246697 | MS.gene32453:CDS | 50.0% | |
| TGTTGCCTACCCCACTTAGT+GGG | + | chr1.4:12247790-12247809 | MS.gene32453:intron | 50.0% | |
| TTCGCCGGAGAATGGGATTA+GGG | - | chr1.4:12246685-12246704 | None:intergenic | 50.0% | |
| TTTCGCCGGAGAATGGGATT+AGG | - | chr1.4:12246686-12246705 | None:intergenic | 50.0% | |
| ! | GCACCGACACTTCAGATTGA+AGG | - | chr1.4:12247133-12247152 | None:intergenic | 50.0% |
| !! | CGACTCTGAAGCAACGCAAA+CGG | - | chr1.4:12246942-12246961 | None:intergenic | 50.0% |
| !! | TGTTGGTTTCGCCGGAGAAT+GGG | - | chr1.4:12246692-12246711 | None:intergenic | 50.0% |
| !! | TTGTTGGTTTCGCCGGAGAA+TGG | - | chr1.4:12246693-12246712 | None:intergenic | 50.0% |
| CCACTTAGTGGGAGAAGGCT+CGG | + | chr1.4:12247801-12247820 | MS.gene32453:intron | 55.0% | |
| CGAGCCTTCTCCCACTAAGT+GGG | - | chr1.4:12247803-12247822 | None:intergenic | 55.0% | |
| CTACCCCACTTAGTGGGAGA+AGG | + | chr1.4:12247796-12247815 | MS.gene32453:intron | 55.0% | |
| CTTCTCCCACTAAGTGGGGT+AGG | - | chr1.4:12247798-12247817 | None:intergenic | 55.0% | |
| GAGCCTTCTCCCACTAAGTG+GGG | - | chr1.4:12247802-12247821 | None:intergenic | 55.0% | |
| GATAACCTTAGCGCCGTCTC+CGG | - | chr1.4:12246844-12246863 | None:intergenic | 55.0% | |
| GTTCCGTTGTCGACGGTGTT+GGG | - | chr1.4:12246663-12246682 | None:intergenic | 55.0% | |
| GTTCTGCGAAAAGGGAGACG+CGG | - | chr1.4:12246803-12246822 | None:intergenic | 55.0% | |
| TAAGCTCGGAGGTGGAGATC+CGG | + | chr1.4:12246869-12246888 | MS.gene32453:CDS | 55.0% | |
| TTGCGTTGCTTCAGAGTCGC+CGG | + | chr1.4:12246943-12246962 | MS.gene32453:CDS | 55.0% | |
| ! | ATCGGACTAGGGCCCAACTT+TGG | - | chr1.4:12248180-12248199 | None:intergenic | 55.0% |
| ! | CTGAAGTCTGGGTGCTGCAT+AGG | + | chr1.4:12247327-12247346 | MS.gene32453:intron | 55.0% |
| ! | TTCCGTTGTCGACGGTGTTG+GGG | - | chr1.4:12246662-12246681 | None:intergenic | 55.0% |
| !! | CTGAAGTGTCGGTGCTGAGT+AGG | + | chr1.4:12247138-12247157 | MS.gene32453:intron | 55.0% |
| AGACTGGACGGGTGAGGTTG+TGG | - | chr1.4:12246743-12246762 | None:intergenic | 60.0% | |
| CAAACCTCCGATGCCGGAGA+CGG | + | chr1.4:12246828-12246847 | MS.gene32453:CDS | 60.0% | |
| CCCTCTCAAACCTCCGATGC+CGG | + | chr1.4:12246822-12246841 | MS.gene32453:CDS | 60.0% | |
| CCGAGCCTTCTCCCACTAAG+TGG | - | chr1.4:12247804-12247823 | None:intergenic | 60.0% | |
| GAGATTGCGAGGCGAGAGAC+TGG | - | chr1.4:12246759-12246778 | None:intergenic | 60.0% | |
| GGTTCCGTTGTCGACGGTGT+TGG | - | chr1.4:12246664-12246683 | None:intergenic | 60.0% | |
| TCCCCCAACACCGTCGACAA+CGG | + | chr1.4:12246657-12246676 | MS.gene32453:CDS | 60.0% | |
| TCTCTCGCCTCGCAATCTCC+TGG | + | chr1.4:12246760-12246779 | MS.gene32453:CDS | 60.0% | |
| TGCGAAAAGGGAGACGCGGA+GGG | - | chr1.4:12246799-12246818 | None:intergenic | 60.0% | |
| TTGCGAGGCGAGAGACTGGA+CGG | - | chr1.4:12246755-12246774 | None:intergenic | 60.0% | |
| ! | CCGGCATCGGAGGTTTGAGA+GGG | - | chr1.4:12246825-12246844 | None:intergenic | 60.0% |
| ! | GGGTGAGGTTGTGGTGGAGA+GGG | - | chr1.4:12246734-12246753 | None:intergenic | 60.0% |
| ! | TCCGGCATCGGAGGTTTGAG+AGG | - | chr1.4:12246826-12246845 | None:intergenic | 60.0% |
| ! | TCCGTTGTCGACGGTGTTGG+GGG | - | chr1.4:12246661-12246680 | None:intergenic | 60.0% |
| CTCGCAATCTCCTGGTCCCG+CGG | + | chr1.4:12246768-12246787 | MS.gene32453:CDS | 65.0% | |
| CTGCGAAAAGGGAGACGCGG+AGG | - | chr1.4:12246800-12246819 | None:intergenic | 65.0% | |
| CTGGACGGGTGAGGTTGTGG+TGG | - | chr1.4:12246740-12246759 | None:intergenic | 65.0% | |
| CTTAGCGCCGTCTCCGGCAT+CGG | - | chr1.4:12246838-12246857 | None:intergenic | 65.0% | |
| TGCGAGGCGAGAGACTGGAC+GGG | - | chr1.4:12246754-12246773 | None:intergenic | 65.0% | |
| ! | CGGGTGAGGTTGTGGTGGAG+AGG | - | chr1.4:12246735-12246754 | None:intergenic | 65.0% |
| AGACGCGGAGGGAGTTGCCG+CGG | - | chr1.4:12246788-12246807 | None:intergenic | 70.0% | |
| CGATGCCGGAGACGGCGCTA+AGG | + | chr1.4:12246836-12246855 | MS.gene32453:CDS | 70.0% | |
| CGCGGGACCAGGAGATTGCG+AGG | - | chr1.4:12246770-12246789 | None:intergenic | 70.0% | |
| GGCGAGAGACTGGACGGGTG+AGG | - | chr1.4:12246749-12246768 | None:intergenic | 70.0% | |
| GACGCGGAGGGAGTTGCCGC+GGG | - | chr1.4:12246787-12246806 | None:intergenic | 75.0% | |
| GAGGGAGTTGCCGCGGGACC+AGG | - | chr1.4:12246781-12246800 | None:intergenic | 75.0% | |
| ! | AGCGCCGTCTCCGGCATCGG+AGG | - | chr1.4:12246835-12246854 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 12246654 | 12248227 | 12246654 | ID=MS.gene32453 |
| chr1.4 | mRNA | 12246654 | 12248227 | 12246654 | ID=MS.gene32453.t1;Parent=MS.gene32453 |
| chr1.4 | exon | 12246654 | 12247015 | 12246654 | ID=MS.gene32453.t1.exon1;Parent=MS.gene32453.t1 |
| chr1.4 | CDS | 12246654 | 12247015 | 12246654 | ID=cds.MS.gene32453.t1;Parent=MS.gene32453.t1 |
| chr1.4 | exon | 12248125 | 12248227 | 12248125 | ID=MS.gene32453.t1.exon2;Parent=MS.gene32453.t1 |
| chr1.4 | CDS | 12248125 | 12248227 | 12248125 | ID=cds.MS.gene32453.t1;Parent=MS.gene32453.t1 |
| Gene Sequence |
| Protein sequence |
