Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32558.t1 | XP_003616410.1 | 97.2 | 1127 | 31 | 1 | 1 | 1127 | 1 | 1126 | 0.00E+00 | 2045.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32558.t1 | Q9M2T1 | 59.2 | 1003 | 379 | 10 | 129 | 1122 | 1 | 982 | 5.3e-305 | 1048.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32558.t1 | G7KBR5 | 97.2 | 1127 | 31 | 1 | 1 | 1127 | 1 | 1126 | 0.0e+00 | 2045.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene011991 | MS.gene32558 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32558.t1 | MTR_5g079920 | 97.516 | 1127 | 27 | 1 | 1 | 1127 | 1 | 1126 | 0.0 | 2256 |
MS.gene32558.t1 | MTR_4g076210 | 35.981 | 214 | 124 | 3 | 41 | 245 | 24 | 233 | 4.62e-29 | 125 |
MS.gene32558.t1 | MTR_4g076210 | 29.697 | 330 | 201 | 7 | 322 | 640 | 228 | 537 | 5.10e-27 | 119 |
MS.gene32558.t1 | MTR_3g109922 | 26.415 | 212 | 142 | 2 | 46 | 243 | 42 | 253 | 5.97e-17 | 87.0 |
MS.gene32558.t1 | MTR_3g109922 | 25.828 | 302 | 193 | 13 | 347 | 638 | 275 | 555 | 2.27e-13 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32558.t1 | AT3G55480 | 62.014 | 1132 | 398 | 12 | 1 | 1122 | 1 | 1110 | 0.0 | 1365 |
MS.gene32558.t1 | AT3G55480 | 58.946 | 1006 | 377 | 13 | 129 | 1122 | 1 | 982 | 0.0 | 1137 |
MS.gene32558.t1 | AT4G23460 | 36.493 | 211 | 121 | 3 | 41 | 242 | 24 | 230 | 2.29e-28 | 124 |
MS.gene32558.t1 | AT4G23460 | 30.818 | 318 | 187 | 8 | 335 | 640 | 241 | 537 | 1.67e-27 | 121 |
MS.gene32558.t1 | AT4G11380 | 30.818 | 318 | 187 | 8 | 335 | 640 | 241 | 537 | 1.39e-27 | 121 |
MS.gene32558.t1 | AT4G11380 | 35.981 | 214 | 124 | 3 | 41 | 245 | 24 | 233 | 3.71e-26 | 116 |
MS.gene32558.t1 | AT4G23460 | 30.818 | 318 | 187 | 8 | 335 | 640 | 147 | 443 | 1.72e-27 | 120 |
MS.gene32558.t1 | AT4G11380 | 30.818 | 318 | 187 | 8 | 335 | 640 | 263 | 559 | 1.95e-27 | 120 |
MS.gene32558.t1 | AT4G11380 | 36.652 | 221 | 126 | 4 | 34 | 245 | 40 | 255 | 3.51e-26 | 117 |
MS.gene32558.t1 | AT5G11490 | 27.230 | 213 | 139 | 4 | 46 | 243 | 41 | 252 | 9.88e-17 | 86.3 |
MS.gene32558.t1 | AT5G11490 | 25.846 | 325 | 206 | 13 | 347 | 661 | 274 | 573 | 4.41e-13 | 74.3 |
MS.gene32558.t1 | AT5G11490 | 27.230 | 213 | 139 | 4 | 46 | 243 | 41 | 252 | 1.39e-16 | 85.9 |
MS.gene32558.t1 | AT5G11490 | 25.846 | 325 | 206 | 13 | 347 | 661 | 274 | 573 | 6.21e-13 | 73.9 |
MS.gene32558.t1 | AT5G11490 | 28.283 | 198 | 122 | 5 | 63 | 243 | 4 | 198 | 3.80e-15 | 80.9 |
MS.gene32558.t1 | AT5G11490 | 25.846 | 325 | 206 | 13 | 347 | 661 | 220 | 519 | 4.86e-13 | 74.3 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTCTGAACAGTCAATTTC+TGG | 0.160270 | 5.1:-62125025 | MS.gene32558:CDS |
CTGAAAGCTTCAATATTAAT+TGG | 0.185952 | 5.1:+62124071 | None:intergenic |
TATTAAGGTTGCTCCTAAAT+TGG | 0.194908 | 5.1:-62130364 | MS.gene32558:CDS |
ACGATCAAGTTCTACTATTA+AGG | 0.238402 | 5.1:-62130379 | MS.gene32558:CDS |
TTGGCTTAAATTTCTTAAAT+AGG | 0.238571 | 5.1:-62123080 | MS.gene32558:CDS |
TGGGGTCAAATAATGCTAAT+TGG | 0.246734 | 5.1:-62130612 | MS.gene32558:CDS |
GCTTGAAGTTTCAGATAAAA+AGG | 0.248262 | 5.1:+62124661 | None:intergenic |
GAAACTTCTCTCGAGCAATT+TGG | 0.257524 | 5.1:-62125359 | MS.gene32558:CDS |
TTCCTAAGCTCCACGATTTA+CGG | 0.258340 | 5.1:-62131053 | MS.gene32558:CDS |
TATAGCGATTCATCCAATTT+AGG | 0.268455 | 5.1:+62130351 | None:intergenic |
ATTATTTGAAAATTGTTCTT+TGG | 0.273575 | 5.1:-62124609 | MS.gene32558:CDS |
GTGGATGATCCTGGTACATC+TGG | 0.274029 | 5.1:-62125079 | MS.gene32558:CDS |
TATGGAAGGCTACAAGGTTT+TGG | 0.275111 | 5.1:+62125145 | None:intergenic |
ATTCATTCTTAAAGAATTTC+AGG | 0.279242 | 5.1:-62128452 | MS.gene32558:intron |
GGGGATCACTCTGGCACTTC+TGG | 0.282683 | 5.1:-62124887 | MS.gene32558:CDS |
GAAGGGTACCTTCTCATAAC+TGG | 0.285739 | 5.1:+62127518 | None:intergenic |
TTAGGTCTCACTGTGCATTA+AGG | 0.286171 | 5.1:-62125482 | MS.gene32558:intron |
AATTCAGTTGGTCCGTAGTT+TGG | 0.302335 | 5.1:-62127251 | MS.gene32558:CDS |
ATTAAACCATTTCCATTTGC+AGG | 0.308293 | 5.1:+62124695 | None:intergenic |
TTTGAGAGCTTCACATTTCT+CGG | 0.320089 | 5.1:+62132553 | None:intergenic |
ATCGACAGCAATGCTTCATT+TGG | 0.328968 | 5.1:+62131246 | None:intergenic |
CATGGAGGCAATCTCTTCTC+TGG | 0.330338 | 5.1:-62124234 | MS.gene32558:CDS |
TGCAAATGGAAATGGTTTAA+TGG | 0.333946 | 5.1:-62124693 | MS.gene32558:CDS |
GCAATGATTGTCTGGTTGTT+GGG | 0.337044 | 5.1:-62127202 | MS.gene32558:CDS |
CAAAATGTGGAAGCGGAAAA+TGG | 0.345825 | 5.1:-62125331 | MS.gene32558:CDS |
CTTCATTTGGTGCAGATGAT+TGG | 0.348331 | 5.1:-62130771 | MS.gene32558:intron |
CAAACTTATGAGTGGGTAAC+AGG | 0.352772 | 5.1:+62123033 | None:intergenic |
GAAAAGGAATCTCACCTTCC+AGG | 0.359392 | 5.1:-62124047 | MS.gene32558:CDS |
AAACGTTGCGTCGCAGTCAT+TGG | 0.371905 | 5.1:-62132342 | MS.gene32558:CDS |
TCAGAGCCAACAGTCCTTCC+AGG | 0.377842 | 5.1:+62127728 | None:intergenic |
AGAAGAGGGTGTACTAATTC+AGG | 0.379871 | 5.1:-62127580 | MS.gene32558:CDS |
TATACTTTCTATTATTGCTT+CGG | 0.380033 | 5.1:-62128488 | MS.gene32558:CDS |
TTGGATCCTGCAAATGGAAA+TGG | 0.380142 | 5.1:-62124701 | MS.gene32558:CDS |
TGCAATGATTGTCTGGTTGT+TGG | 0.381752 | 5.1:-62127203 | MS.gene32558:CDS |
GGCAGCAACGAGACTGTATC+TGG | 0.382076 | 5.1:-62124986 | MS.gene32558:CDS |
AGTAACCTGAGGGAAGAAAT+TGG | 0.383405 | 5.1:+62132493 | None:intergenic |
TAACTTTATAATTGATATGA+TGG | 0.384013 | 5.1:+62127548 | None:intergenic |
GCCGGCACAGTTGCTGCCAT+TGG | 0.389628 | 5.1:-62127790 | MS.gene32558:CDS |
CACAGATACAAGAGAAAGAT+TGG | 0.406743 | 5.1:+62123269 | None:intergenic |
AGAATAACCATTGGAGATAT+CGG | 0.408234 | 5.1:-62124755 | MS.gene32558:CDS |
ACTAACTGTGAAAGAGATCC+AGG | 0.410053 | 5.1:+62125199 | None:intergenic |
TCTTCGTGTAATAAAGATCA+TGG | 0.410319 | 5.1:-62130531 | MS.gene32558:CDS |
GGAGCGATGTTAACGTCTTC+GGG | 0.413968 | 5.1:+62132599 | None:intergenic |
CATCTGAACCTATCAATGAT+AGG | 0.415212 | 5.1:-62125231 | MS.gene32558:CDS |
TAGGTCTCACTGTGCATTAA+GGG | 0.417194 | 5.1:-62125481 | MS.gene32558:CDS |
GGGGTCAAATAATGCTAATT+GGG | 0.421274 | 5.1:-62130611 | MS.gene32558:CDS |
TTCACTTCCTTTAGATGACT+TGG | 0.421488 | 5.1:+62124811 | None:intergenic |
AGGAGCGATGTTAACGTCTT+CGG | 0.421496 | 5.1:+62132598 | None:intergenic |
CTGCGCGTGCAATGATTGTC+TGG | 0.423590 | 5.1:-62127210 | MS.gene32558:CDS |
TATTGAAGCTTTCAGAGAAA+AGG | 0.423988 | 5.1:-62124063 | MS.gene32558:CDS |
TTAATTACAGTTACCGTTGA+AGG | 0.427481 | 5.1:-62123159 | MS.gene32558:CDS |
ATTCCGCCGTCGCTCCGAAT+TGG | 0.427634 | 5.1:+62132684 | None:intergenic |
TTTATCAATATGAGATTTCA+AGG | 0.431183 | 5.1:+62124271 | None:intergenic |
TGCAGGTGTACACTGGATAA+TGG | 0.440796 | 5.1:-62130238 | MS.gene32558:CDS |
AACTGCGAAGAGACTGTGTT+TGG | 0.442036 | 5.1:-62123099 | MS.gene32558:CDS |
ACCCAAGTGCTACACTCTCT+TGG | 0.442514 | 5.1:-62124720 | MS.gene32558:CDS |
GTTTCTGAAATCTGAATCAA+TGG | 0.444058 | 5.1:+62124938 | None:intergenic |
TGTTTCCAATTTCTTCCCTC+AGG | 0.444119 | 5.1:-62132498 | MS.gene32558:intron |
ATGTCAGGCCTTAGCTTGAC+AGG | 0.445975 | 5.1:+62124116 | None:intergenic |
GTCCGTTTCGCTTTCTGACT+AGG | 0.450106 | 5.1:+62124209 | None:intergenic |
GGGACACTAACCCATTGGTT+AGG | 0.450223 | 5.1:-62131200 | MS.gene32558:CDS |
ACCTCTTGTCCTTGTTGCTG+TGG | 0.451472 | 5.1:-62131130 | MS.gene32558:CDS |
TTTGGGAGAGGCTCATAGCC+TGG | 0.452053 | 5.1:+62125163 | None:intergenic |
TCAAATAAAAGCGCTTAAGC+TGG | 0.452336 | 5.1:-62128512 | MS.gene32558:CDS |
ACAATCATTGCACGCGCAGC+AGG | 0.452481 | 5.1:+62127214 | None:intergenic |
CCGGCAGCAAATCTCCTGTC+TGG | 0.454570 | 5.1:+62127808 | None:intergenic |
ATCTTCCAGTGTTACATTGA+AGG | 0.455279 | 5.1:-62130420 | MS.gene32558:CDS |
GCTAAAACGCAAACACAAAC+CGG | 0.457720 | 5.1:+62123212 | None:intergenic |
TTAGTATTTCATGCAGCTCC+AGG | 0.461403 | 5.1:-62125181 | MS.gene32558:CDS |
TTTACAAAGTATCCAATGTC+AGG | 0.462160 | 5.1:+62124101 | None:intergenic |
AAGGACTGTTGGCTCTGATT+AGG | 0.462793 | 5.1:-62127723 | MS.gene32558:CDS |
AGATAAAACCTATCATTGAT+AGG | 0.464643 | 5.1:+62125223 | None:intergenic |
GGACACTAACCCATTGGTTA+GGG | 0.467416 | 5.1:-62131199 | MS.gene32558:CDS |
CAGAGAAGAGATTGCCTCCA+TGG | 0.468576 | 5.1:+62124235 | None:intergenic |
GGCGGATTCCCGCCATGGCT+CGG | 0.469183 | 5.1:+62131166 | None:intergenic |
CCGCCGTCGCTCCGAATTGG+TGG | 0.471478 | 5.1:+62132687 | None:intergenic |
TGACCCCACTCTTCCACATC+GGG | 0.473623 | 5.1:+62130627 | None:intergenic |
TTGGACCTATGTAATTGAAC+TGG | 0.473757 | 5.1:-62125431 | MS.gene32558:CDS |
TTGCTGAAGATCTTCGAACT+TGG | 0.474557 | 5.1:+62124777 | None:intergenic |
GTTGCTGCCACTGACTTCAC+TGG | 0.474867 | 5.1:+62125000 | None:intergenic |
CGGAATCGAATCTGCTATCA+AGG | 0.475985 | 5.1:+62132573 | None:intergenic |
CGTCTTCGGGATCGTCATAG+AGG | 0.478347 | 5.1:+62132612 | None:intergenic |
ATTCTGCAAGCACGCTAGAT+TGG | 0.481320 | 5.1:+62125290 | None:intergenic |
CAATCTTTCTCTTGTATCTG+TGG | 0.481936 | 5.1:-62123268 | MS.gene32558:CDS |
ACTCTCTTGGATCCTGCAAA+TGG | 0.483926 | 5.1:-62124707 | MS.gene32558:CDS |
GGGCGGCGTCAGTGCCGATT+CGG | 0.484741 | 5.1:+62132633 | None:intergenic |
TGGGCACTCCGAGCCATGGC+GGG | 0.486636 | 5.1:-62131174 | MS.gene32558:CDS |
TTGTTAAACGATCATTCCCC+CGG | 0.489484 | 5.1:-62130744 | MS.gene32558:CDS |
ATCCGTAAATCGTGGAGCTT+AGG | 0.489545 | 5.1:+62131051 | None:intergenic |
ACCTTCACAGAAGCAATCAA+TGG | 0.490864 | 5.1:+62123123 | None:intergenic |
TCTAACCTCGATGATGCATC+CGG | 0.492003 | 5.1:-62123231 | MS.gene32558:CDS |
CCTCTTGTCCTTGTTGCTGT+GGG | 0.492340 | 5.1:-62131129 | MS.gene32558:CDS |
GCATTAAGGGAGAAGATAGT+TGG | 0.492928 | 5.1:-62125468 | MS.gene32558:CDS |
TGCATGCCTGGAAGGACTGT+TGG | 0.494258 | 5.1:-62127734 | MS.gene32558:CDS |
GCAGCTGCTCCAACAACCCC+GGG | 0.496265 | 5.1:+62130726 | None:intergenic |
AGCAGCTGCTCCAACAACCC+CGG | 0.500132 | 5.1:+62130725 | None:intergenic |
TCAGAGGAGGTGGATGATCC+TGG | 0.504366 | 5.1:-62125088 | MS.gene32558:CDS |
GTGCTTGCAGAATGCATCTT+CGG | 0.506831 | 5.1:-62125280 | MS.gene32558:CDS |
GCTTCAATATTAATTGGAAG+TGG | 0.508821 | 5.1:+62124077 | None:intergenic |
TTAATGAAAATCAGAATGGC+GGG | 0.510610 | 5.1:-62124907 | MS.gene32558:CDS |
CAACGAAGTCTCTCGAGTCT+TGG | 0.511409 | 5.1:-62124847 | MS.gene32558:CDS |
TTCTATCCAAACTTATGAGT+GGG | 0.511712 | 5.1:+62123026 | None:intergenic |
GAGACTGTATCTGGCGATGA+AGG | 0.513926 | 5.1:-62124977 | MS.gene32558:CDS |
TTAGAGGCAAAAGGTGGTGA+TGG | 0.514821 | 5.1:+62124171 | None:intergenic |
TCAACGGCGGTGTTCCGAAT+CGG | 0.514995 | 5.1:-62132647 | MS.gene32558:CDS |
GCTCAGCATCTTCAATGCTA+AGG | 0.515822 | 5.1:+62123296 | None:intergenic |
AGTGCCCATGCCCTAACCAA+TGG | 0.516304 | 5.1:+62131189 | None:intergenic |
CCATACGTTGATCAGTATGA+TGG | 0.516999 | 5.1:-62125127 | MS.gene32558:CDS |
GAACCATCCAAGTCATCTAA+AGG | 0.517839 | 5.1:-62124818 | MS.gene32558:CDS |
GTACACCCTCTTCTCCATCC+AGG | 0.520755 | 5.1:+62127589 | None:intergenic |
GATCGTGATAAGTACTCGTC+TGG | 0.522233 | 5.1:+62130396 | None:intergenic |
ATGGCAACTGCATGCCTGGA+AGG | 0.522537 | 5.1:-62127742 | MS.gene32558:CDS |
TCATCGAGGTTAGAAGCTAC+TGG | 0.523704 | 5.1:+62123240 | None:intergenic |
CTTCCTTTAGATGACTTGGA+TGG | 0.523928 | 5.1:+62124815 | None:intergenic |
AGTGTACATCACCATTGTTA+TGG | 0.524053 | 5.1:-62130290 | MS.gene32558:CDS |
GTGCCCATGCCCTAACCAAT+GGG | 0.524137 | 5.1:+62131190 | None:intergenic |
TAAACCAGCGCTAGTTTCCA+TGG | 0.526393 | 5.1:-62124252 | MS.gene32558:CDS |
TCTTCCAGTGTTACATTGAA+GGG | 0.526686 | 5.1:-62130419 | MS.gene32558:CDS |
AGTACTGTACTCAACATCCT+TGG | 0.527822 | 5.1:+62127151 | None:intergenic |
CAATGATTGTCTGGTTGTTG+GGG | 0.529613 | 5.1:-62127201 | MS.gene32558:CDS |
ACGGTAACTGTAATTAAGCA+TGG | 0.531856 | 5.1:+62123165 | None:intergenic |
CAATTGTTTCCAGAAGGACC+TGG | 0.533612 | 5.1:-62131223 | MS.gene32558:CDS |
GGCATGGGCACTCCGAGCCA+TGG | 0.535022 | 5.1:-62131178 | MS.gene32558:CDS |
TCTTCCCGATGTGGAAGAGT+GGG | 0.535399 | 5.1:-62130631 | MS.gene32558:CDS |
CAGAATGGCGGGGATCACTC+TGG | 0.537173 | 5.1:-62124896 | MS.gene32558:CDS |
GCCTCCATGGAAACTAGCGC+TGG | 0.537409 | 5.1:+62124248 | None:intergenic |
ATTATATTCGAGATCCAGAC+AGG | 0.538111 | 5.1:-62127822 | MS.gene32558:CDS |
ATACTTCTAAACATACAAGA+TGG | 0.538534 | 5.1:+62124630 | None:intergenic |
CCCATTGATTGCTTCTGTGA+AGG | 0.540095 | 5.1:-62123124 | MS.gene32558:CDS |
ATTACACGAAGAAAACATGA+TGG | 0.540141 | 5.1:+62130542 | None:intergenic |
CTCACATATTCAAACATCCC+TGG | 0.540424 | 5.1:+62124029 | None:intergenic |
ATGAAGGCGGATTCCCGCCA+TGG | 0.540748 | 5.1:+62131161 | None:intergenic |
AACTGTAATTAAGCATGGGA+TGG | 0.541253 | 5.1:+62123170 | None:intergenic |
GAAGTCTCTCGAGTCTTGGT+TGG | 0.541737 | 5.1:-62124843 | MS.gene32558:CDS |
TAACAGTGATTCAGAGGAGG+TGG | 0.542007 | 5.1:-62125098 | MS.gene32558:CDS |
ACCAATGGCAGCAACTGTGC+CGG | 0.542026 | 5.1:+62127789 | None:intergenic |
TGGATGATCCTGGTACATCT+GGG | 0.542973 | 5.1:-62125078 | MS.gene32558:CDS |
ACACTGGATAATGGCGCCTA+AGG | 0.543775 | 5.1:-62130229 | MS.gene32558:CDS |
TTATAAGGTTATAATTCAGT+TGG | 0.544384 | 5.1:-62127263 | MS.gene32558:intron |
GCATAGCTTTAGCAAACACT+TGG | 0.544634 | 5.1:+62128590 | None:intergenic |
TAACCCATTGGTTAGGGCAT+GGG | 0.547486 | 5.1:-62131193 | MS.gene32558:CDS |
GTCATTGGAAGTGAAGAAGC+TGG | 0.548244 | 5.1:-62132327 | MS.gene32558:CDS |
CAGATCCCTGGATGGAGAAG+AGG | 0.548321 | 5.1:-62127595 | MS.gene32558:CDS |
GCAGTTGTACTTGCAGCTGC+AGG | 0.551272 | 5.1:-62130255 | MS.gene32558:CDS |
CGGTATGTGATAGCGAGGCA+TGG | 0.551882 | 5.1:-62130579 | MS.gene32558:CDS |
ATCACTGAGCAAAGCTTCAA+CGG | 0.552688 | 5.1:-62132663 | MS.gene32558:CDS |
GTCGGAGCATTTACCTTCAA+CGG | 0.553038 | 5.1:+62123146 | None:intergenic |
AGAAATGTGAAGCTCTCAAA+CGG | 0.553733 | 5.1:-62132550 | MS.gene32558:CDS |
CCGTAGTTTGGATACAATCA+AGG | 0.553966 | 5.1:-62127239 | MS.gene32558:CDS |
CTTACCACGTATCTTGAAGC+AGG | 0.555381 | 5.1:+62130156 | None:intergenic |
AATTGTTTCCAGAAGGACCT+GGG | 0.557416 | 5.1:-62131222 | MS.gene32558:CDS |
ATGAAGAAGTCTTCATAATG+TGG | 0.558926 | 5.1:+62128553 | None:intergenic |
ATAAATTCCCTGTCAAGCTA+AGG | 0.559978 | 5.1:-62124124 | MS.gene32558:CDS |
CCTTCACAGAAGCAATCAAT+GGG | 0.560302 | 5.1:+62123124 | None:intergenic |
GGTATGTGATAGCGAGGCAT+GGG | 0.560492 | 5.1:-62130578 | MS.gene32558:CDS |
CAGTACTCAAGTATCTTGCC+TGG | 0.560507 | 5.1:-62127135 | MS.gene32558:CDS |
TCAACGTATGGAAGGCTACA+AGG | 0.562471 | 5.1:+62125139 | None:intergenic |
GTGCGGTGAAATCAGATCCC+TGG | 0.563526 | 5.1:-62127607 | MS.gene32558:CDS |
GGAGTCTCAAAATGTGGAAG+CGG | 0.563531 | 5.1:-62125338 | MS.gene32558:CDS |
CGATATAGTCTTACTAGATG+AGG | 0.567817 | 5.1:-62124576 | MS.gene32558:CDS |
AAAAGGAATCTCACCTTCCA+GGG | 0.568458 | 5.1:-62124046 | MS.gene32558:CDS |
TCTTCAGCAAGAATAACCAT+TGG | 0.568661 | 5.1:-62124764 | MS.gene32558:CDS |
TTGCAGCTGCAGGTGTACAC+TGG | 0.570380 | 5.1:-62130245 | MS.gene32558:CDS |
CCATCATACTGATCAACGTA+TGG | 0.570410 | 5.1:+62125127 | None:intergenic |
TTTCTATCCAAACTTATGAG+TGG | 0.570596 | 5.1:+62123025 | None:intergenic |
GTCGATCAATTGTTTCCAGA+AGG | 0.573460 | 5.1:-62131229 | MS.gene32558:CDS |
TTACTCGCTCTCATCGCTCA+AGG | 0.574127 | 5.1:-62132527 | MS.gene32558:CDS |
CTTTGGGTGAGATGATTCCA+AGG | 0.574682 | 5.1:-62127168 | MS.gene32558:CDS |
TCAGAAGACCCAGATGTACC+AGG | 0.574948 | 5.1:+62125070 | None:intergenic |
TTGAAGCAGGCGATGATCGA+AGG | 0.575259 | 5.1:+62130169 | None:intergenic |
CGGTAACTGTAATTAAGCAT+GGG | 0.575835 | 5.1:+62123166 | None:intergenic |
AATGTTAATGAAAATCAGAA+TGG | 0.576541 | 5.1:-62124911 | MS.gene32558:CDS |
TACACCCTCTTCTCCATCCA+GGG | 0.578463 | 5.1:+62127590 | None:intergenic |
AAATGGTGAATCACAGAGGA+AGG | 0.579441 | 5.1:-62125314 | MS.gene32558:CDS |
CTATCATTGATAGGTTCAGA+TGG | 0.579787 | 5.1:+62125232 | None:intergenic |
AGCCTAGTCAGAAAGCGAAA+CGG | 0.581120 | 5.1:-62124211 | MS.gene32558:CDS |
TTCTTCCCGATGTGGAAGAG+TGG | 0.581596 | 5.1:-62130632 | MS.gene32558:CDS |
ATCCAAGAGAGTGTAGCACT+TGG | 0.583531 | 5.1:+62124718 | None:intergenic |
GTCAAGCTAAGGCCTGACAT+TGG | 0.584364 | 5.1:-62124113 | MS.gene32558:CDS |
AGATCCCTGGATGGAGAAGA+GGG | 0.584446 | 5.1:-62127594 | MS.gene32558:CDS |
CAAGAGGTGCAATTGCATGA+AGG | 0.584601 | 5.1:+62131145 | None:intergenic |
GATCACGAATATCATAGCTC+AGG | 0.585308 | 5.1:+62125398 | None:intergenic |
TCCAAGAGAGTGTAGCACTT+GGG | 0.585946 | 5.1:+62124719 | None:intergenic |
CACAGAAGCAATCAATGGGT+CGG | 0.592933 | 5.1:+62123128 | None:intergenic |
TACTTCTAAACATACAAGAT+GGG | 0.594433 | 5.1:+62124631 | None:intergenic |
CCTTGATTGTATCCAAACTA+CGG | 0.594869 | 5.1:+62127239 | None:intergenic |
GTTAATGAAAATCAGAATGG+CGG | 0.595954 | 5.1:-62124908 | MS.gene32558:CDS |
ATGGGCACTCCGAGCCATGG+CGG | 0.596177 | 5.1:-62131175 | MS.gene32558:CDS |
CAATTTGGAGTCTCAAAATG+TGG | 0.598371 | 5.1:-62125344 | MS.gene32558:CDS |
ATGGTGATGTACACTGCAGT+AGG | 0.599426 | 5.1:+62130298 | None:intergenic |
CAGGGATGTTTGAATATGTG+AGG | 0.600419 | 5.1:-62124028 | MS.gene32558:CDS |
CTGGATAATGGCGCCTAAGG+AGG | 0.601876 | 5.1:-62130226 | MS.gene32558:CDS |
CTGGCCCTTCAATGTAACAC+TGG | 0.604405 | 5.1:+62130415 | None:intergenic |
CCCACAGCAACAAGGACAAG+AGG | 0.606377 | 5.1:+62131129 | None:intergenic |
TAAGCTCCACGATTTACGGA+TGG | 0.608419 | 5.1:-62131049 | MS.gene32558:CDS |
ACATGCATCTGCAATTGAAG+AGG | 0.611326 | 5.1:-62131022 | MS.gene32558:intron |
CATACTGATCAACGTATGGA+AGG | 0.611375 | 5.1:+62125131 | None:intergenic |
GTCTTCGGGATCGTCATAGA+GGG | 0.614242 | 5.1:+62132613 | None:intergenic |
TTGACCCCACTCTTCCACAT+CGG | 0.614765 | 5.1:+62130626 | None:intergenic |
CAATCATTGCACGCGCAGCA+GGG | 0.614853 | 5.1:+62127215 | None:intergenic |
CCAGACAGGAGATTTGCTGC+CGG | 0.616334 | 5.1:-62127808 | MS.gene32558:CDS |
CTAACCCATTGGTTAGGGCA+TGG | 0.619044 | 5.1:-62131194 | MS.gene32558:CDS |
AGCTGTTAACAGTGATTCAG+AGG | 0.621517 | 5.1:-62125104 | MS.gene32558:CDS |
CTTGCAGAATGCATCTTCGG+TGG | 0.622297 | 5.1:-62125277 | MS.gene32558:CDS |
CTGTTGGCTCTGATTAGGCA+AGG | 0.622813 | 5.1:-62127718 | MS.gene32558:intron |
GTTCCACCAATTCGGAGCGA+CGG | 0.624950 | 5.1:-62132690 | MS.gene32558:CDS |
AAGGGTACCTTCTCATAACT+GGG | 0.625752 | 5.1:+62127519 | None:intergenic |
TCCTTCTGAAGTAAAACACC+AGG | 0.627310 | 5.1:+62127117 | None:intergenic |
GGAAAGCAACTCTTTAACAG+AGG | 0.628805 | 5.1:-62123343 | MS.gene32558:CDS |
CATATTCAAACATCCCTGGA+AGG | 0.630328 | 5.1:+62124033 | None:intergenic |
TGTAGCACTTGGGTTTAACA+CGG | 0.630885 | 5.1:+62124729 | None:intergenic |
ACGGCTTCCGATATCTCCAA+TGG | 0.640314 | 5.1:+62124748 | None:intergenic |
TAATGAAAATCAGAATGGCG+GGG | 0.640346 | 5.1:-62124906 | MS.gene32558:CDS |
TAATGTGGAGCAAATAGAGA+GGG | 0.641141 | 5.1:+62128568 | None:intergenic |
CTCAGCCAGTTCAATTACAT+AGG | 0.646264 | 5.1:+62125426 | None:intergenic |
GTTCATCCATCCGTAAATCG+TGG | 0.648829 | 5.1:+62131043 | None:intergenic |
TTCTAAACATACAAGATGGG+AGG | 0.651340 | 5.1:+62124634 | None:intergenic |
AATGATTGTCTGGTTGTTGG+GGG | 0.651414 | 5.1:-62127200 | MS.gene32558:CDS |
GGCGATGAAGGTAACAACAA+TGG | 0.651855 | 5.1:-62124965 | MS.gene32558:CDS |
CCACCAATTCGGAGCGACGG+CGG | 0.654914 | 5.1:-62132687 | MS.gene32558:CDS |
AGAACCACCCAGTTATGAGA+AGG | 0.655244 | 5.1:-62127526 | MS.gene32558:intron |
TTCGGGATCGTCATAGAGGG+CGG | 0.655675 | 5.1:+62132616 | None:intergenic |
GATTCTTAATACAATCACAA+AGG | 0.662421 | 5.1:-62127077 | MS.gene32558:intron |
CTTGCAGCAATGAAGTTGTG+AGG | 0.663822 | 5.1:-62130323 | MS.gene32558:CDS |
TCACATTCTAAAGCTGAACA+AGG | 0.664089 | 5.1:-62123364 | MS.gene32558:CDS |
AGTAAGACTATATCGAACAT+CGG | 0.664529 | 5.1:+62124584 | None:intergenic |
ATTGTTTCCAGAAGGACCTG+GGG | 0.665392 | 5.1:-62131221 | MS.gene32558:CDS |
TCGAATCTGCTATCAAGGAG+AGG | 0.669151 | 5.1:+62132578 | None:intergenic |
TCTGGTTCCAGTGAAGTCAG+TGG | 0.670241 | 5.1:-62125007 | MS.gene32558:CDS |
TCTCTGGGCACATAAACCAA+TGG | 0.670656 | 5.1:+62127774 | None:intergenic |
GTGTGAGATTCTTCCCGATG+TGG | 0.670784 | 5.1:-62130640 | MS.gene32558:CDS |
CTAACTGTGAAAGAGATCCA+GGG | 0.670939 | 5.1:+62125200 | None:intergenic |
CTTCCCGATGTGGAAGAGTG+GGG | 0.673122 | 5.1:-62130630 | MS.gene32558:CDS |
GAGGTGCAATTGCATGAAGG+CGG | 0.677361 | 5.1:+62131148 | None:intergenic |
GGATGTTTGAATATGTGAGG+AGG | 0.679287 | 5.1:-62124025 | MS.gene32558:intron |
ATAATGTGGAGCAAATAGAG+AGG | 0.682055 | 5.1:+62128567 | None:intergenic |
TGTCAGGCCTTAGCTTGACA+GGG | 0.683890 | 5.1:+62124117 | None:intergenic |
TACCACTGAGAAGACTGTGT+CGG | 0.685950 | 5.1:-62130457 | MS.gene32558:CDS |
TGTTAACAGTGATTCAGAGG+AGG | 0.690003 | 5.1:-62125101 | MS.gene32558:CDS |
ACTTATGAGTGGGTAACAGG+TGG | 0.692464 | 5.1:+62123036 | None:intergenic |
ACTGAGCAAAGCTTCAACGG+CGG | 0.692518 | 5.1:-62132660 | MS.gene32558:CDS |
ATCGCCTGCTTCAAGATACG+TGG | 0.696189 | 5.1:-62130160 | MS.gene32558:intron |
GGTGAAATCAGATCCCTGGA+TGG | 0.698792 | 5.1:-62127603 | MS.gene32558:CDS |
AGCTGCTCCAACAACCCCGG+GGG | 0.704262 | 5.1:+62130728 | None:intergenic |
TTCCGACACAGTCTTCTCAG+TGG | 0.704709 | 5.1:+62130455 | None:intergenic |
TTGTTTCCAGAAGGACCTGG+GGG | 0.705561 | 5.1:-62131220 | MS.gene32558:CDS |
CAGCTGCTCCAACAACCCCG+GGG | 0.718459 | 5.1:+62130727 | None:intergenic |
CTGTTATGAGACCATAACAA+TGG | 0.726798 | 5.1:+62130279 | None:intergenic |
CGGAAAATGGTGAATCACAG+AGG | 0.732480 | 5.1:-62125318 | MS.gene32558:CDS |
ACCAGCGCTAGTTTCCATGG+AGG | 0.738902 | 5.1:-62124249 | MS.gene32558:CDS |
GGTACCTTCTCATAACTGGG+TGG | 0.739084 | 5.1:+62127522 | None:intergenic |
GATCGAAGGACAAACAACAG+TGG | 0.758896 | 5.1:+62130183 | None:intergenic |
ACAAACCGGATGCATCATCG+AGG | 0.763115 | 5.1:+62123226 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 62123038 | 62132714 | 62123038 | ID=MS.gene32558 |
chr5.1 | mRNA | 62123038 | 62132714 | 62123038 | ID=MS.gene32558.t1;Parent=MS.gene32558 |
chr5.1 | exon | 62132499 | 62132714 | 62132499 | ID=MS.gene32558.t1.exon1;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62132499 | 62132714 | 62132499 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62132296 | 62132372 | 62132296 | ID=MS.gene32558.t1.exon2;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62132296 | 62132372 | 62132296 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62131023 | 62131272 | 62131023 | ID=MS.gene32558.t1.exon3;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62131023 | 62131272 | 62131023 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62130161 | 62130778 | 62130161 | ID=MS.gene32558.t1.exon4;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62130161 | 62130778 | 62130161 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62128453 | 62128626 | 62128453 | ID=MS.gene32558.t1.exon5;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62128453 | 62128626 | 62128453 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62127719 | 62127845 | 62127719 | ID=MS.gene32558.t1.exon6;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62127719 | 62127845 | 62127719 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62127527 | 62127636 | 62127527 | ID=MS.gene32558.t1.exon7;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62127527 | 62127636 | 62127527 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62127078 | 62127278 | 62127078 | ID=MS.gene32558.t1.exon8;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62127078 | 62127278 | 62127078 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62124524 | 62125500 | 62124524 | ID=MS.gene32558.t1.exon9;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62124524 | 62125500 | 62124524 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62124026 | 62124295 | 62124026 | ID=MS.gene32558.t1.exon10;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62124026 | 62124295 | 62124026 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
chr5.1 | exon | 62123038 | 62123401 | 62123038 | ID=MS.gene32558.t1.exon11;Parent=MS.gene32558.t1 |
chr5.1 | CDS | 62123038 | 62123401 | 62123038 | ID=cds.MS.gene32558.t1;Parent=MS.gene32558.t1 |
Gene Sequence |
Protein sequence |