Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011991.t1 | XP_003629449.2 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.50E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011991.t1 | Q8VZ37 | 78.2 | 119 | 26 | 0 | 1 | 119 | 1 | 119 | 1.5e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011991.t1 | G7LES2 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.1e-57 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011991 | MS.gene017498 | PPI |
| MS.gene011991 | MS.gene05970 | PPI |
| MS.gene05971 | MS.gene011991 | PPI |
| MS.gene64669 | MS.gene011991 | PPI |
| MS.gene011991 | MS.gene020531 | PPI |
| MS.gene017498 | MS.gene011991 | PPI |
| MS.gene011991 | MS.gene32558 | PPI |
| MS.gene011991 | MS.gene29487 | PPI |
| MS.gene50165 | MS.gene011991 | PPI |
| MS.gene011991 | MS.gene015707 | PPI |
| MS.gene011991 | MS.gene021005 | PPI |
| MS.gene011991 | MS.gene05860 | PPI |
| MS.gene011991 | MS.gene05859 | PPI |
| MS.gene75781 | MS.gene011991 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011991.t1 | MTR_8g077600 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.40e-82 | 240 |
| MS.gene011991.t1 | MTR_8g077600 | 100.000 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 4.77e-62 | 186 |
| MS.gene011991.t1 | MTR_5g098940 | 40.351 | 114 | 63 | 1 | 1 | 114 | 1 | 109 | 9.33e-23 | 88.2 |
| MS.gene011991.t1 | MTR_7g100010 | 39.831 | 118 | 58 | 3 | 2 | 115 | 3 | 111 | 1.57e-22 | 87.4 |
| MS.gene011991.t1 | MTR_8g102180 | 39.831 | 118 | 58 | 3 | 2 | 115 | 3 | 111 | 1.57e-22 | 87.4 |
| MS.gene011991.t1 | MTR_5g087820 | 39.474 | 114 | 64 | 1 | 1 | 114 | 25 | 133 | 1.51e-21 | 85.9 |
| MS.gene011991.t1 | MTR_1g025190 | 36.800 | 125 | 74 | 1 | 1 | 125 | 1 | 120 | 2.14e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011991.t1 | AT3G50860 | 80.870 | 115 | 22 | 0 | 1 | 115 | 1 | 115 | 6.92e-70 | 207 |
| MS.gene011991.t1 | AT3G50860 | 80.870 | 115 | 22 | 0 | 1 | 115 | 1 | 115 | 1.23e-69 | 207 |
| MS.gene011991.t1 | AT2G17380 | 37.719 | 114 | 66 | 1 | 1 | 114 | 1 | 109 | 9.55e-22 | 85.9 |
| MS.gene011991.t1 | AT4G35410 | 38.596 | 114 | 65 | 1 | 1 | 114 | 1 | 109 | 1.12e-21 | 85.5 |
| MS.gene011991.t1 | AT2G19790 | 38.462 | 117 | 59 | 3 | 2 | 114 | 3 | 110 | 3.58e-21 | 84.0 |
| MS.gene011991.t1 | AT1G47830 | 36.800 | 125 | 74 | 1 | 1 | 125 | 1 | 120 | 5.43e-20 | 80.9 |
| MS.gene011991.t1 | AT4G35410 | 35.922 | 103 | 61 | 1 | 1 | 103 | 1 | 98 | 6.24e-16 | 69.3 |
Find 30 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTAAATTCTATGAATTTC+GGG | 0.169250 | 8.2:+27878423 | MS.gene011991:CDS |
| TCGCTAAATTCTATGAATTT+CGG | 0.234216 | 8.2:+27878422 | MS.gene011991:CDS |
| TACTTTGTGTTCATATTTGA+TGG | 0.255730 | 8.2:+27879570 | MS.gene011991:CDS |
| GTGGATGCTGAGTCCTTCTT+TGG | 0.260123 | 8.2:+27879036 | MS.gene011991:CDS |
| ATTATTCGAAATGTGTTTGC+AGG | 0.341204 | 8.2:+27878565 | MS.gene011991:CDS |
| ACAAAATTGCTGACATGTTC+AGG | 0.379835 | 8.2:-27879015 | None:intergenic |
| CCTTCCGCCGTAAGCTTAAG+TGG | 0.410186 | 8.2:-27882337 | None:intergenic |
| GCGGAAGGAACTGCATGGTT+TGG | 0.437530 | 8.2:+27882352 | MS.gene011991:CDS |
| AAAACGAAGTATCTCTGGTC+AGG | 0.437886 | 8.2:+27882380 | MS.gene011991:CDS |
| TGCTGAGTCCTTCTTTGGCC+CGG | 0.446736 | 8.2:+27879041 | MS.gene011991:CDS |
| TAAAATTCCACTTAAGCTTA+CGG | 0.447967 | 8.2:+27882330 | MS.gene011991:CDS |
| TATCTCTGGTCAGGGAAGTC+GGG | 0.479841 | 8.2:+27882389 | MS.gene011991:CDS |
| ACAAAATACCGGGCCAAAGA+AGG | 0.483410 | 8.2:-27879049 | None:intergenic |
| AATGGAAAACGAAGTATCTC+TGG | 0.485121 | 8.2:+27882375 | MS.gene011991:CDS |
| TTCAGTCTTTGTTGAAACAC+TGG | 0.494117 | 8.2:+27881455 | MS.gene011991:intron |
| GTATCTCTGGTCAGGGAAGT+CGG | 0.497220 | 8.2:+27882388 | MS.gene011991:CDS |
| CGTAGTGTTCAACTATAGTA+AGG | 0.499367 | 8.2:+27881509 | MS.gene011991:CDS |
| CTGTTTCTAGTTGGAGGTCG+CGG | 0.526202 | 8.2:+27882304 | MS.gene011991:intron |
| GCTATGCTTGATTTGATACA+AGG | 0.537768 | 8.2:+27879609 | MS.gene011991:CDS |
| CCACTTAAGCTTACGGCGGA+AGG | 0.538198 | 8.2:+27882337 | MS.gene011991:CDS |
| TCAGCCTGTGGAAAAGCAGC+AGG | 0.552553 | 8.2:+27878540 | MS.gene011991:intron |
| TCTGGTCAGGGAAGTCGGGT+TGG | 0.568920 | 8.2:+27882393 | MS.gene011991:CDS |
| AGGAACTGCATGGTTTGGAA+TGG | 0.571559 | 8.2:+27882357 | MS.gene011991:CDS |
| TTGCAAAGTGCTTGTAGACA+AGG | 0.583497 | 8.2:-27879542 | None:intergenic |
| AAACGAAGTATCTCTGGTCA+GGG | 0.607848 | 8.2:+27882381 | MS.gene011991:CDS |
| TCATAGAATTTAGCGAGACG+AGG | 0.614149 | 8.2:-27878415 | None:intergenic |
| GTGCTTGTGATGAACACACA+AGG | 0.655658 | 8.2:+27878388 | MS.gene011991:CDS |
| TTACGGCGGAAGGAACTGCA+TGG | 0.676247 | 8.2:+27882347 | MS.gene011991:CDS |
| TGCTTGTGATGAACACACAA+GGG | 0.710039 | 8.2:+27878389 | MS.gene011991:CDS |
| AATTCCACTTAAGCTTACGG+CGG | 0.713053 | 8.2:+27882333 | MS.gene011991:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTTACTTAGTAAT+GGG | + | chr8.2:27879707-27879726 | MS.gene011991:intron | 10.0% |
| !!! | GTTTTATTTTTAACTAAATA+TGG | + | chr8.2:27881789-27881808 | MS.gene011991:intron | 10.0% |
| !!! | TAAATAATTTTACTTAGTAA+TGG | + | chr8.2:27879706-27879725 | MS.gene011991:intron | 10.0% |
| !!! | TATCTTTTAATCAAATTAAT+AGG | - | chr8.2:27880874-27880893 | None:intergenic | 10.0% |
| !! | AATATATGATTTATAGTCAA+GGG | - | chr8.2:27881554-27881573 | None:intergenic | 15.0% |
| !! | ATAATAAGTAGTTGAATATA+AGG | + | chr8.2:27878738-27878757 | MS.gene011991:intron | 15.0% |
| !! | CAAAAACAAAACAAAAAAAT+AGG | - | chr8.2:27878909-27878928 | None:intergenic | 15.0% |
| !! | TAAATAAAAAAAGACAACTT+TGG | - | chr8.2:27879688-27879707 | None:intergenic | 15.0% |
| !! | TCAAAAAGTTGAAATATAAT+TGG | - | chr8.2:27878471-27878490 | None:intergenic | 15.0% |
| !!! | AAAATTGTGGTTATAATTTT+TGG | + | chr8.2:27880255-27880274 | MS.gene011991:intron | 15.0% |
| !!! | TATTTTATGTAATATTTGCA+GGG | - | chr8.2:27880440-27880459 | None:intergenic | 15.0% |
| !!! | TTAAAAGATAATTCTTTTGA+TGG | + | chr8.2:27880884-27880903 | MS.gene011991:intron | 15.0% |
| !! | AAAAAAAAAAAAAGTTGTCC+AGG | - | chr8.2:27879641-27879660 | None:intergenic | 20.0% |
| !! | CTTAAAAAAAATAGAGTTCA+AGG | - | chr8.2:27878605-27878624 | None:intergenic | 20.0% |
| !! | GAATATATGATTTATAGTCA+AGG | - | chr8.2:27881555-27881574 | None:intergenic | 20.0% |
| !! | TAAGATTTGAGTATTTCAAA+AGG | + | chr8.2:27878646-27878665 | MS.gene011991:intron | 20.0% |
| !! | TATGTTATTGTCTTATATCA+TGG | + | chr8.2:27879229-27879248 | MS.gene011991:intron | 20.0% |
| !! | TATTATAATAGATCATTAGC+AGG | - | chr8.2:27879916-27879935 | None:intergenic | 20.0% |
| !! | TTTATTGAGAAAAAAGTTCT+GGG | + | chr8.2:27881078-27881097 | MS.gene011991:intron | 20.0% |
| !!! | ACTCTAATAAAATTTCAAGT+TGG | - | chr8.2:27878798-27878817 | None:intergenic | 20.0% |
| !!! | ATAGTAACTTTCTGAAATAT+AGG | + | chr8.2:27878770-27878789 | MS.gene011991:intron | 20.0% |
| !!! | ATATTAGATGAGGTTATTTT+CGG | + | chr8.2:27881954-27881973 | MS.gene011991:intron | 20.0% |
| !!! | CAATTTTAAGATCACAAAAA+TGG | - | chr8.2:27881912-27881931 | None:intergenic | 20.0% |
| !!! | CTATTTTATGTAATATTTGC+AGG | - | chr8.2:27880441-27880460 | None:intergenic | 20.0% |
| !!! | CTTGAACTCTATTTTTTTTA+AGG | + | chr8.2:27878603-27878622 | MS.gene011991:intron | 20.0% |
| !!! | GATTTTGCAATTTTTACTTT+TGG | + | chr8.2:27881230-27881249 | MS.gene011991:intron | 20.0% |
| !!! | TAACTCCATAGATTTTTAAT+TGG | + | chr8.2:27879868-27879887 | MS.gene011991:intron | 20.0% |
| !!! | TAATTATTTCAGTTAGCTTT+GGG | - | chr8.2:27880397-27880416 | None:intergenic | 20.0% |
| !!! | TCTCAAACAAATTTTTGTTT+CGG | + | chr8.2:27881727-27881746 | MS.gene011991:intron | 20.0% |
| !!! | TGTTTTAATTTCACATTTTG+TGG | + | chr8.2:27882208-27882227 | MS.gene011991:intron | 20.0% |
| !!! | TTAATTATTTCAGTTAGCTT+TGG | - | chr8.2:27880398-27880417 | None:intergenic | 20.0% |
| !!! | TTTGAAATACTCAAATCTTA+GGG | - | chr8.2:27878646-27878665 | None:intergenic | 20.0% |
| !!! | TTTTATTGAGAAAAAAGTTC+TGG | + | chr8.2:27881077-27881096 | MS.gene011991:intron | 20.0% |
| !!! | TTTTGAAATACTCAAATCTT+AGG | - | chr8.2:27878647-27878666 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCATTGCATTA+GGG | + | chr8.2:27879654-27879673 | MS.gene011991:intron | 20.0% |
| !!! | TTTTTTTTTTGCATTGCATT+AGG | + | chr8.2:27879653-27879672 | MS.gene011991:intron | 20.0% |
| ! | AAAATGGAAGAACAAAATAC+CGG | - | chr8.2:27879063-27879082 | None:intergenic | 25.0% |
| ! | AAAATGGCAAAGATATGATT+GGG | + | chr8.2:27880844-27880863 | MS.gene011991:intron | 25.0% |
| ! | AAATCAAGTTCTTCAGAAAA+AGG | - | chr8.2:27881181-27881200 | None:intergenic | 25.0% |
| ! | AATGTTAGCATTGTTCAAAA+TGG | + | chr8.2:27880828-27880847 | MS.gene011991:intron | 25.0% |
| ! | ACAAAAAAGTTTATGTGAAG+AGG | + | chr8.2:27879156-27879175 | MS.gene011991:intron | 25.0% |
| ! | AGAAACTGTATTATGCTTTA+GGG | + | chr8.2:27881634-27881653 | MS.gene011991:intron | 25.0% |
| ! | AGATTGGAATGATCAATATT+GGG | - | chr8.2:27880919-27880938 | None:intergenic | 25.0% |
| ! | AGTTGAAATATAATTGGCAA+AGG | - | chr8.2:27878465-27878484 | None:intergenic | 25.0% |
| ! | ATAATCCGACAATATCATAT+CGG | + | chr8.2:27879832-27879851 | MS.gene011991:intron | 25.0% |
| ! | ATGATAACCTATTTAACACT+TGG | + | chr8.2:27880295-27880314 | MS.gene011991:intron | 25.0% |
| ! | ATGTCTCTTTGATGTTAATT+AGG | - | chr8.2:27879128-27879147 | None:intergenic | 25.0% |
| ! | ATTTATTTCGCAAAACAGAA+GGG | - | chr8.2:27881830-27881849 | None:intergenic | 25.0% |
| ! | CAAAAAAGTTTATGTGAAGA+GGG | + | chr8.2:27879157-27879176 | MS.gene011991:intron | 25.0% |
| ! | CAAAACTACAGAGTATAAAA+TGG | - | chr8.2:27879079-27879098 | None:intergenic | 25.0% |
| ! | CAAACTAAGAAGTTAGAATT+TGG | + | chr8.2:27879311-27879330 | MS.gene011991:intron | 25.0% |
| ! | TAAAATTCCACTTAAGCTTA+CGG | + | chr8.2:27882330-27882349 | MS.gene011991:CDS | 25.0% |
| ! | TACTTTGTGTTCATATTTGA+TGG | + | chr8.2:27879570-27879589 | MS.gene011991:CDS | 25.0% |
| ! | TAGAAACTGTATTATGCTTT+AGG | + | chr8.2:27881633-27881652 | MS.gene011991:intron | 25.0% |
| ! | TCAGAAAGTTACTATCAATT+TGG | - | chr8.2:27878765-27878784 | None:intergenic | 25.0% |
| ! | TCAGTTTATGATGACTAATA+CGG | - | chr8.2:27881577-27881596 | None:intergenic | 25.0% |
| ! | TCGCTAAATTCTATGAATTT+CGG | + | chr8.2:27878422-27878441 | MS.gene011991:CDS | 25.0% |
| ! | TCTTTGATGTTAATTAGGAT+AGG | - | chr8.2:27879123-27879142 | None:intergenic | 25.0% |
| ! | TTATTGAGAAAAAAGTTCTG+GGG | + | chr8.2:27881079-27881098 | MS.gene011991:intron | 25.0% |
| !! | AAGATAATTCTTTTGATGGA+TGG | + | chr8.2:27880888-27880907 | MS.gene011991:intron | 25.0% |
| !! | ACATGATTGATAATTTAGTG+TGG | + | chr8.2:27881404-27881423 | MS.gene011991:intron | 25.0% |
| !! | ATAGGTGTCATAATAAAACA+TGG | + | chr8.2:27880325-27880344 | MS.gene011991:intron | 25.0% |
| !! | TTAGTTTGAAAACAAGTTCA+TGG | - | chr8.2:27879299-27879318 | None:intergenic | 25.0% |
| !! | TTTTTGTGTGTATGTTTGTT+TGG | + | chr8.2:27878923-27878942 | MS.gene011991:intron | 25.0% |
| !!! | CTCAAACAAATTTTTGTTTC+GGG | + | chr8.2:27881728-27881747 | MS.gene011991:intron | 25.0% |
| !!! | TAATACAGTTTCTAGTTCAT+TGG | - | chr8.2:27881627-27881646 | None:intergenic | 25.0% |
| !!! | TATAATTTTTGGAACCTTGT+GGG | + | chr8.2:27880266-27880285 | MS.gene011991:intron | 25.0% |
| !!! | TGTTTGTTGTATTATACTTC+AGG | + | chr8.2:27879512-27879531 | MS.gene011991:intron | 25.0% |
| !!! | TTATAATTTTTGGAACCTTG+TGG | + | chr8.2:27880265-27880284 | MS.gene011991:intron | 25.0% |
| !!! | TTTGGTTTTGATTTCTAACT+TGG | + | chr8.2:27878941-27878960 | MS.gene011991:intron | 25.0% |
| !!! | TTTTTTTTGCATTGCATTAG+GGG | + | chr8.2:27879655-27879674 | MS.gene011991:intron | 25.0% |
| AAAGTAACACCAAGATTAGT+TGG | - | chr8.2:27879442-27879461 | None:intergenic | 30.0% | |
| AAATGGAAGAACAAAATACC+GGG | - | chr8.2:27879062-27879081 | None:intergenic | 30.0% | |
| AACATGCAATACAGTTGAAA+TGG | - | chr8.2:27881315-27881334 | None:intergenic | 30.0% | |
| AGTGCAGTATCAAGAAATAA+TGG | - | chr8.2:27879193-27879212 | None:intergenic | 30.0% | |
| ATGATATTGTCGGATTATGT+TGG | - | chr8.2:27879830-27879849 | None:intergenic | 30.0% | |
| ATGCAGTAACAAAATATGAC+TGG | - | chr8.2:27881381-27881400 | None:intergenic | 30.0% | |
| ATTATTCGAAATGTGTTTGC+AGG | + | chr8.2:27878565-27878584 | MS.gene011991:CDS | 30.0% | |
| CAAAATGGCAAAGATATGAT+TGG | + | chr8.2:27880843-27880862 | MS.gene011991:intron | 30.0% | |
| CACAGCCAATTAAAAATCTA+TGG | - | chr8.2:27879876-27879895 | None:intergenic | 30.0% | |
| CATATTCTGCTGCATATTAA+TGG | + | chr8.2:27881660-27881679 | MS.gene011991:intron | 30.0% | |
| CATCAAATCTACTACATATG+TGG | - | chr8.2:27880969-27880988 | None:intergenic | 30.0% | |
| CATCACTGAATGGAAATAAT+AGG | + | chr8.2:27880095-27880114 | MS.gene011991:intron | 30.0% | |
| CGCTAAATTCTATGAATTTC+GGG | + | chr8.2:27878423-27878442 | MS.gene011991:CDS | 30.0% | |
| CTAATTATTATATGCGAAGC+AGG | + | chr8.2:27882241-27882260 | MS.gene011991:intron | 30.0% | |
| GAAGTTTCCAAGTGTTAAAT+AGG | - | chr8.2:27880305-27880324 | None:intergenic | 30.0% | |
| GAGATTGGAATGATCAATAT+TGG | - | chr8.2:27880920-27880939 | None:intergenic | 30.0% | |
| GAGTTTGTGTTGTCAAATAT+CGG | + | chr8.2:27880547-27880566 | MS.gene011991:intron | 30.0% | |
| GATGCATACTATATTAGATG+AGG | + | chr8.2:27881944-27881963 | MS.gene011991:intron | 30.0% | |
| GATTTATTTCGCAAAACAGA+AGG | - | chr8.2:27881831-27881850 | None:intergenic | 30.0% | |
| GGAGTTAAACTACAAAATTG+TGG | + | chr8.2:27880242-27880261 | MS.gene011991:intron | 30.0% | |
| TAATTCCTTTCATAACGTTC+TGG | + | chr8.2:27880069-27880088 | MS.gene011991:intron | 30.0% | |
| TACAAAGTCAAGGACTAATT+TGG | + | chr8.2:27878869-27878888 | MS.gene011991:intron | 30.0% | |
| TAGAAAAGTTTCTCTCTTGT+CGG | - | chr8.2:27880351-27880370 | None:intergenic | 30.0% | |
| TATAATTCACACTCCCTAAA+GGG | + | chr8.2:27880473-27880492 | MS.gene011991:intron | 30.0% | |
| TCACTAACATACTCTCAAAA+TGG | - | chr8.2:27878710-27878729 | None:intergenic | 30.0% | |
| TGTTCAACTATAGTAAGGTA+AGG | + | chr8.2:27881514-27881533 | MS.gene011991:intron | 30.0% | |
| TTAACACTTGGAAACTTCAT+AGG | + | chr8.2:27880307-27880326 | MS.gene011991:intron | 30.0% | |
| TTATAATTCACACTCCCTAA+AGG | + | chr8.2:27880472-27880491 | MS.gene011991:intron | 30.0% | |
| ! | CAATAGAAGCTGCTTTATAT+CGG | + | chr8.2:27880193-27880212 | MS.gene011991:intron | 30.0% |
| ! | TAACTAAATATGGGTTGCTT+TGG | + | chr8.2:27881799-27881818 | MS.gene011991:intron | 30.0% |
| ! | TTAGTTCTCATAGATAAGCT+TGG | + | chr8.2:27881113-27881132 | MS.gene011991:intron | 30.0% |
| ! | TTTAAGGTTGCTCTCTAATA+GGG | + | chr8.2:27878619-27878638 | MS.gene011991:intron | 30.0% |
| !! | ATAATTCTTTTGATGGATGG+TGG | + | chr8.2:27880891-27880910 | MS.gene011991:intron | 30.0% |
| !! | CATAGATTTTTAATTGGCTG+TGG | + | chr8.2:27879874-27879893 | MS.gene011991:intron | 30.0% |
| !! | TGTTTTATGAAGTATTCTCG+TGG | + | chr8.2:27881331-27881350 | MS.gene011991:intron | 30.0% |
| !! | TTCCAAAATCTGTTTCTAGT+TGG | + | chr8.2:27882295-27882314 | MS.gene011991:intron | 30.0% |
| !! | TTTTGATAGCCAACTAATCT+TGG | + | chr8.2:27879430-27879449 | MS.gene011991:intron | 30.0% |
| !!! | AATTTTTACTTTTGGAGCTG+TGG | + | chr8.2:27881238-27881257 | MS.gene011991:intron | 30.0% |
| !!! | CTGCATATTAATGGATTTTC+TGG | + | chr8.2:27881669-27881688 | MS.gene011991:intron | 30.0% |
| !!! | TCGTTTGGAATCGAATTTTT+TGG | - | chr8.2:27880011-27880030 | None:intergenic | 30.0% |
| !!! | TTTTAAGGTTGCTCTCTAAT+AGG | + | chr8.2:27878618-27878637 | MS.gene011991:intron | 30.0% |
| AATGACATTGTTCAGTCTAC+TGG | - | chr8.2:27880942-27880961 | None:intergenic | 35.0% | |
| ACAAAATTGCTGACATGTTC+AGG | - | chr8.2:27879018-27879037 | None:intergenic | 35.0% | |
| AGTCAAGGACTAATTTGGTT+TGG | + | chr8.2:27878874-27878893 | MS.gene011991:intron | 35.0% | |
| AGTGTTTCAACAAAGACTGA+AGG | - | chr8.2:27881456-27881475 | None:intergenic | 35.0% | |
| ATAATTCACACTCCCTAAAG+GGG | + | chr8.2:27880474-27880493 | MS.gene011991:intron | 35.0% | |
| ATTTGGAAGAAGAACTAACG+TGG | + | chr8.2:27879328-27879347 | MS.gene011991:intron | 35.0% | |
| CGTAGTGTTCAACTATAGTA+AGG | + | chr8.2:27881509-27881528 | MS.gene011991:CDS | 35.0% | |
| CTAATATAGTATGCATCTGC+AGG | - | chr8.2:27881941-27881960 | None:intergenic | 35.0% | |
| CTACTCCGATATGATATTGT+CGG | - | chr8.2:27879840-27879859 | None:intergenic | 35.0% | |
| CTATAACCTGTAAGTTAGAG+AGG | + | chr8.2:27880756-27880775 | MS.gene011991:intron | 35.0% | |
| GACAATATCATATCGGAGTA+GGG | + | chr8.2:27879839-27879858 | MS.gene011991:intron | 35.0% | |
| TCTAAACCTCTCTAACTTAC+AGG | - | chr8.2:27880765-27880784 | None:intergenic | 35.0% | |
| TGAGATATGAGATCAACAGT+AGG | - | chr8.2:27879392-27879411 | None:intergenic | 35.0% | |
| TGAGCTATTAAGCAAAAGAG+TGG | - | chr8.2:27881853-27881872 | None:intergenic | 35.0% | |
| TGATACCAGAACGTTATGAA+AGG | - | chr8.2:27880077-27880096 | None:intergenic | 35.0% | |
| TTAGCCATGTTAAAAACCAG+AGG | - | chr8.2:27882053-27882072 | None:intergenic | 35.0% | |
| TTCAGTCTTTGTTGAAACAC+TGG | + | chr8.2:27881455-27881474 | MS.gene011991:intron | 35.0% | |
| TTTATATCGGTGATAGGTTG+AGG | + | chr8.2:27880206-27880225 | MS.gene011991:intron | 35.0% | |
| TTTGATACAAGGTAGATTCC+TGG | + | chr8.2:27879620-27879639 | MS.gene011991:intron | 35.0% | |
| TTTGGAAGAAGAACTAACGT+GGG | + | chr8.2:27879329-27879348 | MS.gene011991:intron | 35.0% | |
| TTTGTAAGACGCTCTCAAAT+AGG | - | chr8.2:27878855-27878874 | None:intergenic | 35.0% | |
| ! | AATGGAAAACGAAGTATCTC+TGG | + | chr8.2:27882375-27882394 | MS.gene011991:CDS | 35.0% |
| ! | ATGGGTTAATTGCAATCCTT+TGG | + | chr8.2:27879725-27879744 | MS.gene011991:intron | 35.0% |
| ! | CTCCAACTAGAAACAGATTT+TGG | - | chr8.2:27882300-27882319 | None:intergenic | 35.0% |
| ! | GCTATGCTTGATTTGATACA+AGG | + | chr8.2:27879609-27879628 | MS.gene011991:CDS | 35.0% |
| ! | TGAACATGTCAGCAATTTTG+TGG | + | chr8.2:27879017-27879036 | MS.gene011991:CDS | 35.0% |
| ! | TGTCAATTCTGTCCAGTTTT+GGG | - | chr8.2:27880038-27880057 | None:intergenic | 35.0% |
| ! | TTAGAGAGGTTTAGAAGTGT+CGG | + | chr8.2:27880770-27880789 | MS.gene011991:intron | 35.0% |
| ! | TTGTCAATTCTGTCCAGTTT+TGG | - | chr8.2:27880039-27880058 | None:intergenic | 35.0% |
| !! | ACTGTCAACTTTTTGACTGA+GGG | - | chr8.2:27881758-27881777 | None:intergenic | 35.0% |
| !! | CAAAATCTGTTTCTAGTTGG+AGG | + | chr8.2:27882298-27882317 | MS.gene011991:intron | 35.0% |
| !! | GGCTTTATATGGCAGATTTT+TGG | + | chr8.2:27880665-27880684 | MS.gene011991:intron | 35.0% |
| !! | GGTGAGTTTTAGTGCTAATT+TGG | - | chr8.2:27881160-27881179 | None:intergenic | 35.0% |
| !! | TACTGTCAACTTTTTGACTG+AGG | - | chr8.2:27881759-27881778 | None:intergenic | 35.0% |
| !! | TTAGATGAGGTTATTTTCGG+AGG | + | chr8.2:27881957-27881976 | MS.gene011991:intron | 35.0% |
| !!! | AGATTTTTTGACAACCACCA+TGG | + | chr8.2:27880601-27880620 | MS.gene011991:intron | 35.0% |
| !!! | CTTTCCTCTGGTTTTTAACA+TGG | + | chr8.2:27882046-27882065 | MS.gene011991:intron | 35.0% |
| AACAAAGACTGAAGGCAGAA+AGG | - | chr8.2:27881448-27881467 | None:intergenic | 40.0% | |
| AATTCCACTTAAGCTTACGG+CGG | + | chr8.2:27882333-27882352 | MS.gene011991:CDS | 40.0% | |
| ACAAAGACTGAAGGCAGAAA+GGG | - | chr8.2:27881447-27881466 | None:intergenic | 40.0% | |
| ACATGATAACCTTGCACTCA+AGG | + | chr8.2:27880119-27880138 | MS.gene011991:intron | 40.0% | |
| AGATCATTAGCAGGCTTAAC+AGG | - | chr8.2:27879907-27879926 | None:intergenic | 40.0% | |
| ATTTCAAAAGGCCACTGACA+CGG | + | chr8.2:27878658-27878677 | MS.gene011991:intron | 40.0% | |
| CAATTCTGTCTGCATGCTTA+TGG | - | chr8.2:27881013-27881032 | None:intergenic | 40.0% | |
| CGACAATATCATATCGGAGT+AGG | + | chr8.2:27879838-27879857 | MS.gene011991:intron | 40.0% | |
| GACAACACAAAAGCAATGTG+AGG | - | chr8.2:27878515-27878534 | None:intergenic | 40.0% | |
| GTTATCATTTCAGACCCACA+AGG | - | chr8.2:27880283-27880302 | None:intergenic | 40.0% | |
| GTTCTGGTATCATCACTGAA+TGG | + | chr8.2:27880085-27880104 | MS.gene011991:intron | 40.0% | |
| TCATAGAATTTAGCGAGACG+AGG | - | chr8.2:27878418-27878437 | None:intergenic | 40.0% | |
| TGCTTGTGATGAACACACAA+GGG | + | chr8.2:27878389-27878408 | MS.gene011991:CDS | 40.0% | |
| TGGAACAAGATTGATTGCAC+TGG | - | chr8.2:27882280-27882299 | None:intergenic | 40.0% | |
| TTCCCCTACATAAATAGCGA+GGG | - | chr8.2:27880168-27880187 | None:intergenic | 40.0% | |
| TTGTTCAGTCTACTGGAGAT+TGG | - | chr8.2:27880935-27880954 | None:intergenic | 40.0% | |
| ! | AAAACGAAGTATCTCTGGTC+AGG | + | chr8.2:27882380-27882399 | MS.gene011991:CDS | 40.0% |
| ! | AAACGAAGTATCTCTGGTCA+GGG | + | chr8.2:27882381-27882400 | MS.gene011991:CDS | 40.0% |
| ! | AGCTGCTTTATATCGGTGAT+AGG | + | chr8.2:27880200-27880219 | MS.gene011991:intron | 40.0% |
| ! | GTCAATTCTGTCCAGTTTTG+GGG | - | chr8.2:27880037-27880056 | None:intergenic | 40.0% |
| ! | TGCTTTATGGCGGCTTTATA+TGG | + | chr8.2:27880654-27880673 | MS.gene011991:intron | 40.0% |
| ! | TTGCAAAGTGCTTGTAGACA+AGG | - | chr8.2:27879545-27879564 | None:intergenic | 40.0% |
| !! | CTGTCAACTTTTTGACTGAG+GGG | - | chr8.2:27881757-27881776 | None:intergenic | 40.0% |
| !! | TGAGAAAAAAGTTCTGGGGT+AGG | + | chr8.2:27881083-27881102 | MS.gene011991:intron | 40.0% |
| !! | TGCAATCCTTTGGTGTTCTT+GGG | + | chr8.2:27879735-27879754 | MS.gene011991:intron | 40.0% |
| !! | TTGCAATCCTTTGGTGTTCT+TGG | + | chr8.2:27879734-27879753 | MS.gene011991:intron | 40.0% |
| !!! | AGATTTTTGGCTTTCCTCCA+TGG | + | chr8.2:27880678-27880697 | MS.gene011991:intron | 40.0% |
| ACAAAATACCGGGCCAAAGA+AGG | - | chr8.2:27879052-27879071 | None:intergenic | 45.0% | |
| CAATTCCAACTGTTGTGCCA+AGG | - | chr8.2:27880502-27880521 | None:intergenic | 45.0% | |
| CACAAACTCCTAGTATGTGC+AGG | - | chr8.2:27880536-27880555 | None:intergenic | 45.0% | |
| CCAAACGAATTCCCCAAAAC+TGG | + | chr8.2:27880023-27880042 | MS.gene011991:intron | 45.0% | |
| CTCCCCTCGCTATTTATGTA+GGG | + | chr8.2:27880162-27880181 | MS.gene011991:intron | 45.0% | |
| CTGAAACCCAAGAACACCAA+AGG | - | chr8.2:27879744-27879763 | None:intergenic | 45.0% | |
| CTGAACTTGTCTCTAACACC+TGG | - | chr8.2:27881983-27882002 | None:intergenic | 45.0% | |
| CTTCCCCTACATAAATAGCG+AGG | - | chr8.2:27880169-27880188 | None:intergenic | 45.0% | |
| GTAGTGCAATGATGCAACAC+TGG | + | chr8.2:27879962-27879981 | MS.gene011991:intron | 45.0% | |
| GTGCTTGTGATGAACACACA+AGG | + | chr8.2:27878388-27878407 | MS.gene011991:CDS | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | + | chr8.2:27880553-27880572 | MS.gene011991:intron | 45.0% | |
| GTTAGAGACAAGTTCAGCTG+AGG | + | chr8.2:27881986-27882005 | MS.gene011991:intron | 45.0% | |
| TCATGGCATGTCGTTGAAAG+AGG | + | chr8.2:27879246-27879265 | MS.gene011991:intron | 45.0% | |
| TCCCCTACATAAATAGCGAG+GGG | - | chr8.2:27880167-27880186 | None:intergenic | 45.0% | |
| TCCCCTCGCTATTTATGTAG+GGG | + | chr8.2:27880163-27880182 | MS.gene011991:intron | 45.0% | |
| TCTCCCCTCGCTATTTATGT+AGG | + | chr8.2:27880161-27880180 | MS.gene011991:intron | 45.0% | |
| ! | AAAGTGCTCTCTCTTTCCTC+TGG | + | chr8.2:27882034-27882053 | MS.gene011991:intron | 45.0% |
| ! | AAGTTCAGCTGAGGTTCTGA+AGG | + | chr8.2:27881995-27882014 | MS.gene011991:intron | 45.0% |
| !! | GAGAGCGTCTTACAAAGTCA+AGG | + | chr8.2:27878859-27878878 | MS.gene011991:intron | 45.0% |
| !! | TTTGAAAGTGTCCGTGTCAG+TGG | - | chr8.2:27878672-27878691 | None:intergenic | 45.0% |
| !!! | ATTTCCTGCTGCTTTTCCAC+AGG | - | chr8.2:27878547-27878566 | None:intergenic | 45.0% |
| !!! | CCAGTTTTGGGGAATTCGTT+TGG | - | chr8.2:27880026-27880045 | None:intergenic | 45.0% |
| !!! | TTTTATTTTTAACTAAATAT+GGG | + | chr8.2:27881790-27881809 | MS.gene011991:intron | 5.0% |
| AATCTGCCATGGTGCTTCCA+TGG | - | chr8.2:27880573-27880592 | None:intergenic | 50.0% | |
| CATGGCCAATCTGTGAAGGA+CGG | + | chr8.2:27880619-27880638 | MS.gene011991:intron | 50.0% | |
| CCATGAGACCTGCACATACT+AGG | + | chr8.2:27880525-27880544 | MS.gene011991:intron | 50.0% | |
| CCTAGTATGTGCAGGTCTCA+TGG | - | chr8.2:27880528-27880547 | None:intergenic | 50.0% | |
| CTTCCTTCGATGACACTCGT+AGG | + | chr8.2:27880702-27880721 | MS.gene011991:intron | 50.0% | |
| GTATCTCTGGTCAGGGAAGT+CGG | + | chr8.2:27882388-27882407 | MS.gene011991:CDS | 50.0% | |
| GTGGATGCTGAGTCCTTCTT+TGG | + | chr8.2:27879036-27879055 | MS.gene011991:CDS | 50.0% | |
| GTGTCATCGAAGGAAGACCA+TGG | - | chr8.2:27880698-27880717 | None:intergenic | 50.0% | |
| TATCTCTGGTCAGGGAAGTC+GGG | + | chr8.2:27882389-27882408 | MS.gene011991:CDS | 50.0% | |
| TCATCGAAGGAAGACCATGG+AGG | - | chr8.2:27880695-27880714 | None:intergenic | 50.0% | |
| TCTCCTACGAGTGTCATCGA+AGG | - | chr8.2:27880708-27880727 | None:intergenic | 50.0% | |
| TGCACTCAAGGTTACCCCAA+GGG | + | chr8.2:27880131-27880150 | MS.gene011991:intron | 50.0% | |
| TGGCATGTCGTTGAAAGAGG+CGG | + | chr8.2:27879249-27879268 | MS.gene011991:intron | 50.0% | |
| TGTGCCAAGGTTCCCCTTTA+GGG | - | chr8.2:27880489-27880508 | None:intergenic | 50.0% | |
| TGTTGTCGTTGATCAGCCTG+TGG | + | chr8.2:27878528-27878547 | MS.gene011991:intron | 50.0% | |
| TTGCACTCAAGGTTACCCCA+AGG | + | chr8.2:27880130-27880149 | MS.gene011991:intron | 50.0% | |
| TTGGGGTAACCTTGAGTGCA+AGG | - | chr8.2:27880131-27880150 | None:intergenic | 50.0% | |
| TTGTGCCAAGGTTCCCCTTT+AGG | - | chr8.2:27880490-27880509 | None:intergenic | 50.0% | |
| ! | TCGGTGATAGGTTGAGGACT+CGG | + | chr8.2:27880212-27880231 | MS.gene011991:intron | 50.0% |
| !! | CTGTTTCTAGTTGGAGGTCG+CGG | + | chr8.2:27882304-27882323 | MS.gene011991:intron | 50.0% |
| !! | TGAGGTTATTTTCGGAGGCC+AGG | + | chr8.2:27881962-27881981 | MS.gene011991:intron | 50.0% |
| AGCACCATGGCAGATTGTGG+TGG | + | chr8.2:27880577-27880596 | MS.gene011991:intron | 55.0% | |
| CACTCCCTAAAGGGGAACCT+TGG | + | chr8.2:27880482-27880501 | MS.gene011991:intron | 55.0% | |
| CCACCATGGCCAATCTGTGA+AGG | + | chr8.2:27880615-27880634 | MS.gene011991:intron | 55.0% | |
| CCACTTAAGCTTACGGCGGA+AGG | + | chr8.2:27882337-27882356 | MS.gene011991:CDS | 55.0% | |
| CCTTCCGCCGTAAGCTTAAG+TGG | - | chr8.2:27882340-27882359 | None:intergenic | 55.0% | |
| GCGGAAGGAACTGCATGGTT+TGG | + | chr8.2:27882352-27882371 | MS.gene011991:CDS | 55.0% | |
| GGGAACCTTGGCACAACAGT+TGG | + | chr8.2:27880494-27880513 | MS.gene011991:intron | 55.0% | |
| GTGCCTGTGGTGCTTTATGG+CGG | + | chr8.2:27880644-27880663 | MS.gene011991:intron | 55.0% | |
| TCAGCCTGTGGAAAAGCAGC+AGG | + | chr8.2:27878540-27878559 | MS.gene011991:intron | 55.0% | |
| TCTGCCACCACAATCTGCCA+TGG | - | chr8.2:27880584-27880603 | None:intergenic | 55.0% | |
| TGCTGAGTCCTTCTTTGGCC+CGG | + | chr8.2:27879041-27879060 | MS.gene011991:CDS | 55.0% | |
| TTACGGCGGAAGGAACTGCA+TGG | + | chr8.2:27882347-27882366 | MS.gene011991:CDS | 55.0% | |
| ! | AAGCCGCCATAAAGCACCAC+AGG | - | chr8.2:27880650-27880669 | None:intergenic | 55.0% |
| ! | CCTTCACAGATTGGCCATGG+TGG | - | chr8.2:27880618-27880637 | None:intergenic | 55.0% |
| ! | CGGTGATAGGTTGAGGACTC+GGG | + | chr8.2:27880213-27880232 | MS.gene011991:intron | 55.0% |
| ! | CGTCCTTCACAGATTGGCCA+TGG | - | chr8.2:27880621-27880640 | None:intergenic | 55.0% |
| ! | GGTGATAGGTTGAGGACTCG+GGG | + | chr8.2:27880214-27880233 | MS.gene011991:intron | 55.0% |
| !! | GGAAGCACCATGGCAGATTG+TGG | + | chr8.2:27880574-27880593 | MS.gene011991:intron | 55.0% |
| !! | TATCGGCCATGGAAGCACCA+TGG | + | chr8.2:27880564-27880583 | MS.gene011991:intron | 55.0% |
| CACCGCCGTCCTTCACAGAT+TGG | - | chr8.2:27880627-27880646 | None:intergenic | 60.0% | |
| GCGGTGCCTGTGGTGCTTTA+TGG | + | chr8.2:27880641-27880660 | MS.gene011991:intron | 60.0% | |
| GGCCAATCTGTGAAGGACGG+CGG | + | chr8.2:27880622-27880641 | MS.gene011991:intron | 60.0% | |
| GGTTGAGGACTCGGGGTGAT+TGG | + | chr8.2:27880221-27880240 | MS.gene011991:intron | 60.0% | |
| TCTGGTCAGGGAAGTCGGGT+TGG | + | chr8.2:27882393-27882412 | MS.gene011991:CDS | 60.0% | |
| ! | AGGGGAGAGTGTGCTCCCTT+GGG | - | chr8.2:27880149-27880168 | None:intergenic | 60.0% |
| ! | GAGGGGAGAGTGTGCTCCCT+TGG | - | chr8.2:27880150-27880169 | None:intergenic | 65.0% |
| ! | GGGGAGAGTGTGCTCCCTTG+GGG | - | chr8.2:27880148-27880167 | None:intergenic | 65.0% |
| GTGAAGGACGGCGGTGCCTG+TGG | + | chr8.2:27880631-27880650 | MS.gene011991:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 27878376 | 27882421 | 27878376 | ID=MS.gene011991 |
| chr8.2 | mRNA | 27878376 | 27882421 | 27878376 | ID=MS.gene011991.t1;Parent=MS.gene011991 |
| chr8.2 | exon | 27878376 | 27878444 | 27878376 | ID=MS.gene011991.t1.exon1;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27878376 | 27878444 | 27878376 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| chr8.2 | exon | 27878544 | 27878586 | 27878544 | ID=MS.gene011991.t1.exon2;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27878544 | 27878586 | 27878544 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| chr8.2 | exon | 27879001 | 27879062 | 27879001 | ID=MS.gene011991.t1.exon3;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27879001 | 27879062 | 27879001 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| chr8.2 | exon | 27879534 | 27879630 | 27879534 | ID=MS.gene011991.t1.exon4;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27879534 | 27879630 | 27879534 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| chr8.2 | exon | 27881460 | 27881530 | 27881460 | ID=MS.gene011991.t1.exon5;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27881460 | 27881530 | 27881460 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| chr8.2 | exon | 27882314 | 27882421 | 27882314 | ID=MS.gene011991.t1.exon6;Parent=MS.gene011991.t1 |
| chr8.2 | CDS | 27882314 | 27882421 | 27882314 | ID=cds.MS.gene011991.t1;Parent=MS.gene011991.t1 |
| Gene Sequence |
| Protein sequence |
