Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32575.t1 | AMB51752.1 | 99.3 | 290 | 2 | 0 | 4 | 293 | 1 | 290 | 9.60E-149 | 536.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32575.t1 | A0A3Q7HH64 | 72.3 | 249 | 65 | 3 | 4 | 251 | 1 | 246 | 4.1e-100 | 365.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32575.t1 | A0A0X8DSR8 | 99.3 | 290 | 2 | 0 | 4 | 293 | 1 | 290 | 6.9e-149 | 536.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053931 | MS.gene32575 | 0.802276 | 6.06E-49 | -1.69E-46 |
MS.gene059867 | MS.gene32575 | 0.850632 | 1.50E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 81 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTCGTCGGTGGGGTTCT+TGG | 0.156808 | 8.4:-48477829 | None:intergenic |
GAGTTGCTGGTTCTGGTTAC+TGG | 0.209450 | 8.4:+48477156 | MS.gene32575:CDS |
GGTGCAGGCAAGGCGAATTT+TGG | 0.246467 | 8.4:+48477068 | MS.gene32575:intron |
TTTGATCCTTGGGTTCTTCC+AGG | 0.310994 | 8.4:+48476741 | MS.gene32575:CDS |
CTTGTACAAGTTTGATCCTT+GGG | 0.318790 | 8.4:+48476731 | MS.gene32575:CDS |
ATTGAATCCTCACCGGAGTT+TGG | 0.319990 | 8.4:+48477708 | MS.gene32575:CDS |
CCAAACAGAGTTGCTGGTTC+TGG | 0.323652 | 8.4:+48477149 | MS.gene32575:CDS |
AAGTCAATTTCAGCAATAAT+TGG | 0.338246 | 8.4:-48476711 | None:intergenic |
TTGTTAAGTTTCATCATAAT+GGG | 0.344250 | 8.4:+48476564 | None:intergenic |
TTTGTTAAGTTTCATCATAA+TGG | 0.350596 | 8.4:+48476563 | None:intergenic |
CGAAATGTTGGACTCGTTCC+TGG | 0.353931 | 8.4:+48477560 | MS.gene32575:CDS |
CTGTTTGGTCTAGAACCATT+TGG | 0.354289 | 8.4:-48477134 | None:intergenic |
CATTCTTTGCTTGAAAATGT+TGG | 0.363451 | 8.4:-48477498 | None:intergenic |
AGCTCTGATCATCAATTTCC+AGG | 0.378659 | 8.4:-48477578 | None:intergenic |
CTTTGAACCTCTTCGTCGGT+GGG | 0.389977 | 8.4:-48477837 | None:intergenic |
TATCTATGTCGTAAAGTTGC+AGG | 0.400628 | 8.4:+48476672 | MS.gene32575:CDS |
TTTGGATATTTCCTGTCCCT+TGG | 0.404470 | 8.4:-48477116 | None:intergenic |
TCTCCTCTTGCTGTAGCATT+CGG | 0.405277 | 8.4:-48477626 | None:intergenic |
TCCTCACCGGAGTTTGGATT+AGG | 0.414541 | 8.4:+48477714 | MS.gene32575:CDS |
CGTGCCACCGTTTGGTAACA+TGG | 0.418390 | 8.4:+48477791 | MS.gene32575:CDS |
CCAGAACCAGCAACTCTGTT+TGG | 0.423168 | 8.4:-48477149 | None:intergenic |
TCTAGACCAAACAGAGTTGC+TGG | 0.423965 | 8.4:+48477143 | MS.gene32575:CDS |
ATTGATGCAGCTTGATGATT+GGG | 0.428244 | 8.4:+48477428 | MS.gene32575:intron |
TATTGATGCAGCTTGATGAT+TGG | 0.443903 | 8.4:+48477427 | MS.gene32575:intron |
TGGATTAGGAAACCAGAGTC+AGG | 0.444473 | 8.4:+48477728 | MS.gene32575:CDS |
ACTTGTACAAGTTTGATCCT+TGG | 0.451700 | 8.4:+48476730 | MS.gene32575:CDS |
CTACAGCAAGAGGAGAAGTT+CGG | 0.456841 | 8.4:+48477633 | MS.gene32575:CDS |
TACAGCAAGAGGAGAAGTTC+GGG | 0.459516 | 8.4:+48477634 | MS.gene32575:CDS |
GTTCCTTCCGTGCCACCGTT+TGG | 0.466910 | 8.4:+48477783 | MS.gene32575:CDS |
GGGTTTCACAACATGGGTGC+TGG | 0.473359 | 8.4:+48477654 | MS.gene32575:CDS |
ACAACTGAAGGTAGAAAAGT+TGG | 0.474990 | 8.4:+48477206 | MS.gene32575:CDS |
AACAAGAAGCTCCTCATCAG+TGG | 0.476509 | 8.4:-48476646 | None:intergenic |
TTCGCCTTCATCGTCGTCCC+AGG | 0.477914 | 8.4:+48477533 | MS.gene32575:CDS |
GCTTTGAACCTCTTCGTCGG+TGG | 0.485096 | 8.4:-48477838 | None:intergenic |
TGTGAAAGAGGATCTCTCTC+TGG | 0.490458 | 8.4:-48476591 | None:intergenic |
GTTTGGTAACATGGACTTGT+CGG | 0.494850 | 8.4:+48477800 | MS.gene32575:CDS |
AGTCAGGGGATGCTGAATTA+CGG | 0.495349 | 8.4:+48477744 | MS.gene32575:CDS |
GCTTCGCGAAAACACAATCT+TGG | 0.501596 | 8.4:+48477317 | MS.gene32575:CDS |
GAAGTTCGGGTTTCACAACA+TGG | 0.506769 | 8.4:+48477647 | MS.gene32575:CDS |
TATATTGGCAAAGCACCAAA+AGG | 0.512258 | 8.4:+48477251 | MS.gene32575:CDS |
GGTAAACTCAACTGTGAAAG+AGG | 0.512342 | 8.4:-48476603 | None:intergenic |
ATTTCTTCAGTCCAAGGGAC+AGG | 0.517559 | 8.4:+48477105 | MS.gene32575:CDS |
AATTCAGCATCCCCTGACTC+TGG | 0.524401 | 8.4:-48477740 | None:intergenic |
GACAAAATTATCACAACTGA+AGG | 0.526909 | 8.4:+48477194 | MS.gene32575:CDS |
AGTCCAACATTTCGTCCACC+TGG | 0.531736 | 8.4:-48477551 | None:intergenic |
TCAAGCAAAGAATGCAGCAA+TGG | 0.536044 | 8.4:+48477507 | MS.gene32575:CDS |
CAGATTCTTCCCCACTGATG+AGG | 0.543031 | 8.4:+48476635 | MS.gene32575:CDS |
GTGAGGATTCAATATCTGTC+GGG | 0.549879 | 8.4:-48477698 | None:intergenic |
ATCAGAGCTTTGCATTGCCG+CGG | 0.552759 | 8.4:+48477592 | MS.gene32575:CDS |
GTCCCAGGTGGACGAAATGT+TGG | 0.553604 | 8.4:+48477548 | MS.gene32575:CDS |
AATGGTATTTCTTCAGTCCA+AGG | 0.554883 | 8.4:+48477099 | MS.gene32575:CDS |
ACAAGAAGCTCCTCATCAGT+GGG | 0.557935 | 8.4:-48476645 | None:intergenic |
GCTGCTTTGAACCTCTTCGT+CGG | 0.558434 | 8.4:-48477841 | None:intergenic |
TCCACCTGGGACGACGATGA+AGG | 0.560826 | 8.4:-48477537 | None:intergenic |
GGTGAGGATTCAATATCTGT+CGG | 0.563156 | 8.4:-48477699 | None:intergenic |
ACTCCGAATGCTACAGCAAG+AGG | 0.568493 | 8.4:+48477623 | MS.gene32575:CDS |
TCAGAGCTTTGCATTGCCGC+GGG | 0.574657 | 8.4:+48477593 | MS.gene32575:CDS |
GACAAGTCCATGTTACCAAA+CGG | 0.575738 | 8.4:-48477798 | None:intergenic |
TTTGAACCTCTTCGTCGGTG+GGG | 0.576389 | 8.4:-48477836 | None:intergenic |
TTACCAAACGGTGGCACGGA+AGG | 0.576728 | 8.4:-48477786 | None:intergenic |
GGATTAGGAAACCAGAGTCA+GGG | 0.583546 | 8.4:+48477729 | MS.gene32575:CDS |
CAAGAACCCCACCGACGAAG+AGG | 0.586414 | 8.4:+48477830 | MS.gene32575:CDS |
ATGGTATTTCTTCAGTCCAA+GGG | 0.588129 | 8.4:+48477100 | MS.gene32575:CDS |
AGGGACAGGAAATATCCAAA+TGG | 0.592563 | 8.4:+48477119 | MS.gene32575:CDS |
TCTGGTTACTGGAAAGCCAC+AGG | 0.607999 | 8.4:+48477167 | MS.gene32575:CDS |
GCCTTCATCGTCGTCCCAGG+TGG | 0.609301 | 8.4:+48477536 | MS.gene32575:CDS |
CATGTTACCAAACGGTGGCA+CGG | 0.615690 | 8.4:-48477790 | None:intergenic |
GTCCAACATTTCGTCCACCT+GGG | 0.623948 | 8.4:-48477550 | None:intergenic |
TAATTACCTGGAAGAACCCA+AGG | 0.624355 | 8.4:-48476747 | None:intergenic |
GACAGATATTGAATCCTCAC+CGG | 0.626126 | 8.4:+48477701 | MS.gene32575:CDS |
GATTAGGAAACCAGAGTCAG+GGG | 0.641898 | 8.4:+48477730 | MS.gene32575:CDS |
TGGTAACATGGACTTGTCGG+CGG | 0.643282 | 8.4:+48477803 | MS.gene32575:CDS |
GTGGGGAAGAATCTGAAACC+AGG | 0.652605 | 8.4:-48476627 | None:intergenic |
TCACAGTTGAGTTTACCACC+TGG | 0.654718 | 8.4:+48476609 | MS.gene32575:CDS |
TGGTTTCCTAATCCAAACTC+CGG | 0.659176 | 8.4:-48477720 | None:intergenic |
TCCTAATCCAAACTCCGGTG+AGG | 0.662436 | 8.4:-48477715 | None:intergenic |
AAGTTCGGGTTTCACAACAT+GGG | 0.678618 | 8.4:+48477648 | MS.gene32575:CDS |
ATTCGGAGTGATGTTACCCG+CGG | 0.710388 | 8.4:-48477609 | None:intergenic |
AAGTCCATGTTACCAAACGG+TGG | 0.730264 | 8.4:-48477795 | None:intergenic |
GGGAAGAATCTGAAACCAGG+TGG | 0.741808 | 8.4:-48476624 | None:intergenic |
CAAGAAGCTCCTCATCAGTG+GGG | 0.747868 | 8.4:-48476644 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATTTTAACATTGTTGTTA+TGG | + | chr8.4:48477041-48477060 | MS.gene32575:intron | 20.0% |
! | AAGTCAATTTCAGCAATAAT+TGG | - | chr8.4:48476714-48476733 | None:intergenic | 25.0% |
! | CAAAAGGAACAAAAACTAAT+TGG | + | chr8.4:48477267-48477286 | MS.gene32575:CDS | 25.0% |
! | CTGAAATTCTGACAATAATA+CGG | + | chr8.4:48476928-48476947 | MS.gene32575:intron | 25.0% |
!!! | AAAGCACTTGTTTTCTATAT+TGG | + | chr8.4:48477236-48477255 | MS.gene32575:CDS | 25.0% |
!!! | CAATTAGTTTTTGTTCCTTT+TGG | - | chr8.4:48477269-48477288 | None:intergenic | 25.0% |
!!! | TAACATTGTTGTTATGGTTT+TGG | + | chr8.4:48477047-48477066 | MS.gene32575:intron | 25.0% |
CAGGTAATTATCACCAATTT+AGG | + | chr8.4:48476760-48476779 | MS.gene32575:intron | 30.0% | |
CATTCTTTGCTTGAAAATGT+TGG | - | chr8.4:48477501-48477520 | None:intergenic | 30.0% | |
CTCATCAATAAAAATGAGCA+AGG | - | chr8.4:48477379-48477398 | None:intergenic | 30.0% | |
GACAAAATTATCACAACTGA+AGG | + | chr8.4:48477194-48477213 | MS.gene32575:CDS | 30.0% | |
TAACTATTGCAAAATCACAG+TGG | - | chr8.4:48476875-48476894 | None:intergenic | 30.0% | |
! | CTAAATTGGTGATAATTACC+TGG | - | chr8.4:48476762-48476781 | None:intergenic | 30.0% |
AATGGTATTTCTTCAGTCCA+AGG | + | chr8.4:48477099-48477118 | MS.gene32575:CDS | 35.0% | |
ACAACTGAAGGTAGAAAAGT+TGG | + | chr8.4:48477206-48477225 | MS.gene32575:CDS | 35.0% | |
ACTTGTACAAGTTTGATCCT+TGG | + | chr8.4:48476730-48476749 | MS.gene32575:CDS | 35.0% | |
ATGGTATTTCTTCAGTCCAA+GGG | + | chr8.4:48477100-48477119 | MS.gene32575:CDS | 35.0% | |
CTTGTACAAGTTTGATCCTT+GGG | + | chr8.4:48476731-48476750 | MS.gene32575:CDS | 35.0% | |
TATCTATGTCGTAAAGTTGC+AGG | + | chr8.4:48476672-48476691 | MS.gene32575:CDS | 35.0% | |
TCTGCAATTGCAACCTAAAT+TGG | - | chr8.4:48476776-48476795 | None:intergenic | 35.0% | |
! | ATTGATGCAGCTTGATGATT+GGG | + | chr8.4:48477428-48477447 | MS.gene32575:intron | 35.0% |
! | GATAATTTTGTCTGTTCCTG+TGG | - | chr8.4:48477186-48477205 | None:intergenic | 35.0% |
! | TATATTGGCAAAGCACCAAA+AGG | + | chr8.4:48477251-48477270 | MS.gene32575:CDS | 35.0% |
! | TATTGATGCAGCTTGATGAT+TGG | + | chr8.4:48477427-48477446 | MS.gene32575:intron | 35.0% |
!! | CGAATTTTGGTGAGAAAGAA+TGG | + | chr8.4:48477081-48477100 | MS.gene32575:CDS | 35.0% |
AGGGACAGGAAATATCCAAA+TGG | + | chr8.4:48477119-48477138 | MS.gene32575:CDS | 40.0% | |
CCGTAAGTTTGTCAGAATCA+CGG | + | chr8.4:48476845-48476864 | MS.gene32575:intron | 40.0% | |
CCGTGATTCTGACAAACTTA+CGG | - | chr8.4:48476848-48476867 | None:intergenic | 40.0% | |
GAAAAACTCAAGCTCGCAAA+AGG | + | chr8.4:48477470-48477489 | MS.gene32575:CDS | 40.0% | |
GACAAGTCCATGTTACCAAA+CGG | - | chr8.4:48477801-48477820 | None:intergenic | 40.0% | |
GACAGATATTGAATCCTCAC+CGG | + | chr8.4:48477701-48477720 | MS.gene32575:CDS | 40.0% | |
GGTAAACTCAACTGTGAAAG+AGG | - | chr8.4:48476606-48476625 | None:intergenic | 40.0% | |
GGTGAGGATTCAATATCTGT+CGG | - | chr8.4:48477702-48477721 | None:intergenic | 40.0% | |
GTGAGGATTCAATATCTGTC+GGG | - | chr8.4:48477701-48477720 | None:intergenic | 40.0% | |
TAATTACCTGGAAGAACCCA+AGG | - | chr8.4:48476750-48476769 | None:intergenic | 40.0% | |
TCAAGCAAAGAATGCAGCAA+TGG | + | chr8.4:48477507-48477526 | MS.gene32575:CDS | 40.0% | |
TGGTTTCCTAATCCAAACTC+CGG | - | chr8.4:48477723-48477742 | None:intergenic | 40.0% | |
TTTGGATATTTCCTGTCCCT+TGG | - | chr8.4:48477119-48477138 | None:intergenic | 40.0% | |
! | AAGTTCGGGTTTCACAACAT+GGG | + | chr8.4:48477648-48477667 | MS.gene32575:CDS | 40.0% |
! | AGCTCTGATCATCAATTTCC+AGG | - | chr8.4:48477581-48477600 | None:intergenic | 40.0% |
! | CTGTTTGGTCTAGAACCATT+TGG | - | chr8.4:48477137-48477156 | None:intergenic | 40.0% |
! | GTTTGGTAACATGGACTTGT+CGG | + | chr8.4:48477800-48477819 | MS.gene32575:CDS | 40.0% |
! | TGCTGGACTTTTCTCTGATT+GGG | + | chr8.4:48477671-48477690 | MS.gene32575:CDS | 40.0% |
!!! | TGTTGTTATGGTTTTGGTGC+AGG | + | chr8.4:48477053-48477072 | MS.gene32575:intron | 40.0% |
AACAAGAAGCTCCTCATCAG+TGG | - | chr8.4:48476649-48476668 | None:intergenic | 45.0% | |
AAGTCCATGTTACCAAACGG+TGG | - | chr8.4:48477798-48477817 | None:intergenic | 45.0% | |
ACAAGAAGCTCCTCATCAGT+GGG | - | chr8.4:48476648-48476667 | None:intergenic | 45.0% | |
AGTCAGGGGATGCTGAATTA+CGG | + | chr8.4:48477744-48477763 | MS.gene32575:CDS | 45.0% | |
ATTGAATCCTCACCGGAGTT+TGG | + | chr8.4:48477708-48477727 | MS.gene32575:CDS | 45.0% | |
ATTTCTTCAGTCCAAGGGAC+AGG | + | chr8.4:48477105-48477124 | MS.gene32575:CDS | 45.0% | |
CTACAGCAAGAGGAGAAGTT+CGG | + | chr8.4:48477633-48477652 | MS.gene32575:CDS | 45.0% | |
GATTAGGAAACCAGAGTCAG+GGG | + | chr8.4:48477730-48477749 | MS.gene32575:CDS | 45.0% | |
GCTTCGCGAAAACACAATCT+TGG | + | chr8.4:48477317-48477336 | MS.gene32575:CDS | 45.0% | |
GGATTAGGAAACCAGAGTCA+GGG | + | chr8.4:48477729-48477748 | MS.gene32575:CDS | 45.0% | |
TACAGCAAGAGGAGAAGTTC+GGG | + | chr8.4:48477634-48477653 | MS.gene32575:CDS | 45.0% | |
TCACAGTTGAGTTTACCACC+TGG | + | chr8.4:48476609-48476628 | MS.gene32575:CDS | 45.0% | |
TCTAGACCAAACAGAGTTGC+TGG | + | chr8.4:48477143-48477162 | MS.gene32575:CDS | 45.0% | |
TGTGAAAGAGGATCTCTCTC+TGG | - | chr8.4:48476594-48476613 | None:intergenic | 45.0% | |
TTTGATCCTTGGGTTCTTCC+AGG | + | chr8.4:48476741-48476760 | MS.gene32575:CDS | 45.0% | |
! | GAAGTTCGGGTTTCACAACA+TGG | + | chr8.4:48477647-48477666 | MS.gene32575:CDS | 45.0% |
! | GTGCTGGACTTTTCTCTGAT+TGG | + | chr8.4:48477670-48477689 | MS.gene32575:CDS | 45.0% |
! | TCTCCTCTTGCTGTAGCATT+CGG | - | chr8.4:48477629-48477648 | None:intergenic | 45.0% |
! | TGGATTAGGAAACCAGAGTC+AGG | + | chr8.4:48477728-48477747 | MS.gene32575:CDS | 45.0% |
!!! | TTATGGTTTTGGTGCAGGCA+AGG | + | chr8.4:48477058-48477077 | MS.gene32575:intron | 45.0% |
AATTCAGCATCCCCTGACTC+TGG | - | chr8.4:48477743-48477762 | None:intergenic | 50.0% | |
ACTCCGAATGCTACAGCAAG+AGG | + | chr8.4:48477623-48477642 | MS.gene32575:CDS | 50.0% | |
AGTCCAACATTTCGTCCACC+TGG | - | chr8.4:48477554-48477573 | None:intergenic | 50.0% | |
ATCAGAGCTTTGCATTGCCG+CGG | + | chr8.4:48477592-48477611 | MS.gene32575:CDS | 50.0% | |
ATTCGGAGTGATGTTACCCG+CGG | - | chr8.4:48477612-48477631 | None:intergenic | 50.0% | |
CAAGAAGCTCCTCATCAGTG+GGG | - | chr8.4:48476647-48476666 | None:intergenic | 50.0% | |
CAGATTCTTCCCCACTGATG+AGG | + | chr8.4:48476635-48476654 | MS.gene32575:CDS | 50.0% | |
CATGTTACCAAACGGTGGCA+CGG | - | chr8.4:48477793-48477812 | None:intergenic | 50.0% | |
CCAGAACCAGCAACTCTGTT+TGG | - | chr8.4:48477152-48477171 | None:intergenic | 50.0% | |
CGAAATGTTGGACTCGTTCC+TGG | + | chr8.4:48477560-48477579 | MS.gene32575:CDS | 50.0% | |
GTCCAACATTTCGTCCACCT+GGG | - | chr8.4:48477553-48477572 | None:intergenic | 50.0% | |
TCCTAATCCAAACTCCGGTG+AGG | - | chr8.4:48477718-48477737 | None:intergenic | 50.0% | |
TCCTCACCGGAGTTTGGATT+AGG | + | chr8.4:48477714-48477733 | MS.gene32575:CDS | 50.0% | |
TCTGGTTACTGGAAAGCCAC+AGG | + | chr8.4:48477167-48477186 | MS.gene32575:CDS | 50.0% | |
TGGTAACATGGACTTGTCGG+CGG | + | chr8.4:48477803-48477822 | MS.gene32575:CDS | 50.0% | |
! | GGGAAGAATCTGAAACCAGG+TGG | - | chr8.4:48476627-48476646 | None:intergenic | 50.0% |
! | GTGGGGAAGAATCTGAAACC+AGG | - | chr8.4:48476630-48476649 | None:intergenic | 50.0% |
!! | CCAAACAGAGTTGCTGGTTC+TGG | + | chr8.4:48477149-48477168 | MS.gene32575:CDS | 50.0% |
!! | GAGTTGCTGGTTCTGGTTAC+TGG | + | chr8.4:48477156-48477175 | MS.gene32575:CDS | 50.0% |
GGGTTTCACAACATGGGTGC+TGG | + | chr8.4:48477654-48477673 | MS.gene32575:CDS | 55.0% | |
GTCCCAGGTGGACGAAATGT+TGG | + | chr8.4:48477548-48477567 | MS.gene32575:CDS | 55.0% | |
TCAGAGCTTTGCATTGCCGC+GGG | + | chr8.4:48477593-48477612 | MS.gene32575:CDS | 55.0% | |
TTACCAAACGGTGGCACGGA+AGG | - | chr8.4:48477789-48477808 | None:intergenic | 55.0% | |
! | CGTGCCACCGTTTGGTAACA+TGG | + | chr8.4:48477791-48477810 | MS.gene32575:CDS | 55.0% |
! | GGTGCAGGCAAGGCGAATTT+TGG | + | chr8.4:48477068-48477087 | MS.gene32575:intron | 55.0% |
CTCTTCGTCGGTGGGGTTCT+TGG | - | chr8.4:48477832-48477851 | None:intergenic | 60.0% | |
GTTCCTTCCGTGCCACCGTT+TGG | + | chr8.4:48477783-48477802 | MS.gene32575:CDS | 60.0% | |
TCCACCTGGGACGACGATGA+AGG | - | chr8.4:48477540-48477559 | None:intergenic | 60.0% | |
TTCGCCTTCATCGTCGTCCC+AGG | + | chr8.4:48477533-48477552 | MS.gene32575:CDS | 60.0% | |
GCCTTCATCGTCGTCCCAGG+TGG | + | chr8.4:48477536-48477555 | MS.gene32575:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 48476572 | 48477851 | 48476572 | ID=MS.gene32575 |
chr8.4 | mRNA | 48476572 | 48477851 | 48476572 | ID=MS.gene32575.t1;Parent=MS.gene32575 |
chr8.4 | exon | 48476572 | 48476762 | 48476572 | ID=MS.gene32575.t1.exon1;Parent=MS.gene32575.t1 |
chr8.4 | CDS | 48476572 | 48476762 | 48476572 | ID=cds.MS.gene32575.t1;Parent=MS.gene32575.t1 |
chr8.4 | exon | 48477075 | 48477349 | 48477075 | ID=MS.gene32575.t1.exon2;Parent=MS.gene32575.t1 |
chr8.4 | CDS | 48477075 | 48477349 | 48477075 | ID=cds.MS.gene32575.t1;Parent=MS.gene32575.t1 |
chr8.4 | exon | 48477438 | 48477851 | 48477438 | ID=MS.gene32575.t1.exon3;Parent=MS.gene32575.t1 |
chr8.4 | CDS | 48477438 | 48477851 | 48477438 | ID=cds.MS.gene32575.t1;Parent=MS.gene32575.t1 |
Gene Sequence |
Protein sequence |