AlfalfaGEDB | MS.gene32576

M. sativa cultivar XinJiangDaYe / MS.gene32576

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32576.t1	AMB51752.1	99.3	290	2	0	4	293	1	290	9.60E-149	536.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32576.t1	A0A3Q7HH64	72.3	249	65	3	4	251	1	246	4.1e-100	365.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32576.t1	A0A0X8DSR8	99.3	290	2	0	4	293	1	290	6.9e-149	536.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059867	MS.gene32576	0.841731	3.98E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 81 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAGCTCCTCATCAG+TGG	0.476509	8.4:+48459321	None:intergenic
AAGTCAATTTCAGCAATAAT+TGG	0.338246	8.4:+48459256	None:intergenic
AAGTCCATGTTACCAAACGG+TGG	0.730264	8.4:+48458172	None:intergenic
AAGTTCGGGTTTCACAACAT+GGG	0.678618	8.4:-48458319	MS.gene32576:CDS
AATGGTATTTCTTCAGTCCA+AGG	0.554883	8.4:-48458868	MS.gene32576:CDS
AATTCAGCATCCCCTGACTC+TGG	0.524401	8.4:+48458227	None:intergenic
ACAACTGAAGGTAGAAAAGT+TGG	0.474990	8.4:-48458761	MS.gene32576:CDS
ACAAGAAGCTCCTCATCAGT+GGG	0.557935	8.4:+48459322	None:intergenic
ACTCCGAATGCTACAGCAAG+AGG	0.568493	8.4:-48458344	MS.gene32576:CDS
ACTTGTACAAGTTTGATCCT+TGG	0.451700	8.4:-48459237	MS.gene32576:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGGTAATTATCACCAATTT+AGG	-	chr8.4:48458326-48458345	MS.gene32576:CDS	30.0%
CATTCTTTGCTTGAAAATGT+TGG	+	chr8.4:48459067-48459086	None:intergenic	30.0%
CTCATCAATAAAAATGAGCA+AGG	+	chr8.4:48458945-48458964	None:intergenic	30.0%
GACAAAATTATCACAACTGA+AGG	-	chr8.4:48458760-48458779	MS.gene32576:CDS	30.0%
TAACTATTGCAAAATCACAG+TGG	+	chr8.4:48458441-48458460	None:intergenic	30.0%
AATGGTATTTCTTCAGTCCA+AGG	-	chr8.4:48458665-48458684	MS.gene32576:CDS	35.0%
ACAACTGAAGGTAGAAAAGT+TGG	-	chr8.4:48458772-48458791	MS.gene32576:CDS	35.0%
ACTTGTACAAGTTTGATCCT+TGG	-	chr8.4:48458296-48458315	MS.gene32576:CDS	35.0%
ATGGTATTTCTTCAGTCCAA+GGG	-	chr8.4:48458666-48458685	MS.gene32576:CDS	35.0%
CTTGTACAAGTTTGATCCTT+GGG	-	chr8.4:48458297-48458316	MS.gene32576:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	48458138	48459417	48458138	ID=MS.gene32576
chr8.4	mRNA	48458138	48459417	48458138	ID=MS.gene32576.t1;Parent=MS.gene32576
chr8.4	exon	48459227	48459417	48459227	ID=MS.gene32576.t1.exon1;Parent=MS.gene32576.t1
chr8.4	CDS	48459227	48459417	48459227	ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1
chr8.4	exon	48458640	48458914	48458640	ID=MS.gene32576.t1.exon2;Parent=MS.gene32576.t1
chr8.4	CDS	48458640	48458914	48458640	ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1
chr8.4	exon	48458138	48458551	48458138	ID=MS.gene32576.t1.exon3;Parent=MS.gene32576.t1
chr8.4	CDS	48458138	48458551	48458138	ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1

Gene Sequence

>MS.gene32576

TTTCATCATAATGGGAGTTCCAGAGAGAGATCCTCTTTCACAGTTGAGTTTACCACCTGGTTTCAGATTCTTCCCCACTGATGAGGAGCTTCTTGTTCAGTATCTATGTCGTAAAGTTGCAGGACATCATTTTTCTTTGCCAATTATTGCTGAAATTGACTTGTACAAGTTTGATCCTTGGGTTCTTCCAGGTAATTATCACCAATTTAGGTTGCAATTGCAGAATTGTTCATGTCTTTAAATTTTAAAATATTAAATGTATGTTTGATATTTCCGTAAGTTTGTCAGAATCACGGTGAACCACTGTGATTTTGCAATAGTTACACTTTCAAGCTTGTAACTTTTGCAAGATCACACTGAAATTCTGACAATAATACGGTAATATGAAACATGCACTAAAATCACAACTATGTTAATACTGTTGCTAAATATTTTGTGTTGTTTATATTTAATTTGTTTAATTGAGATGCAATTTTAACATTGTTGTTATGGTTTTGGTGCAGGCAAGGCGAATTTTGGTGAGAAAGAATGGTATTTCTTCAGTCCAAGGGACAGGAAATATCCAAATGGTTCTAGACCAAACAGAGTTGCTGGTTCTGGTTACTGGAAAGCCACAGGAACAGACAAAATTATCACAACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTATATTGGCAAAGCACCAAAAGGAACAAAAACTAATTGGATTATGCATGAGTATCGTCTTCTTGATGCTTCGCGAAAACACAATCTTGGTAGCACAAAAGTAAGCAACACAATCGTATTATATTTCCTTGCTCATTTTTATTGATGAGAAAAGTAAAGAATCTAACTTATTTGATTTATTGATGCAGCTTGATGATTGGGTTTTGTGTCGAATATACAAGAAAAACTCAAGCTCGCAAAAGGAAATTCCAACATTTTCAAGCAAAGAATGCAGCAATGGTTCTTCGCCTTCATCGTCGTCCCAGGTGGACGAAATGTTGGACTCGTTCCTGGAAATTGATGATCAGAGCTTTGCATTGCCGCGGGTAACATCACTCCGAATGCTACAGCAAGAGGAGAAGTTCGGGTTTCACAACATGGGTGCTGGACTTTTCTCTGATTGGGTTAACCCGACAGATATTGAATCCTCACCGGAGTTTGGATTAGGAAACCAGAGTCAGGGGATGCTGAATTACGGTTGTAATGACTATTGTGTTCCTTCCGTGCCACCGTTTGGTAACATGGACTTGTCGGCGGAGTCCAAGAACCCCACCGACGAAGAG

Protein sequence

>MS.gene32576.t1

FHHNGSSRERSSFTVEFTTWFQILPHUUGASCSVSMSUSCRTSFFFANYCUNULVQVUSLGSSRQGEFWUERMVFLQSKGQEISKWFUTKQSCWFWLLESHRNRQNYHNURUKSWHKKSTCFLYWQSTKRNKNULDYAUVSSSUCFAKTQSWUHKTUULGFVSNIQEKLKLAKGNSNIFKQRMQQWFFAFIVVPGGRNVGLVPGNUUSELCIAAGNITPNATARGEVRVSQHGCWTFLULGUPDRYUILTGVWIRKPESGDAELRLUULLCSFRATVWUHGLVGGVQEPHRRR