Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32576.t1 | AMB51752.1 | 99.3 | 290 | 2 | 0 | 4 | 293 | 1 | 290 | 9.60E-149 | 536.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32576.t1 | A0A3Q7HH64 | 72.3 | 249 | 65 | 3 | 4 | 251 | 1 | 246 | 4.1e-100 | 365.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32576.t1 | A0A0X8DSR8 | 99.3 | 290 | 2 | 0 | 4 | 293 | 1 | 290 | 6.9e-149 | 536.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059867 | MS.gene32576 | 0.841731 | 3.98E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 81 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTCGTCGGTGGGGTTCT+TGG | 0.156808 | 8.4:+48458138 | None:intergenic |
GAGTTGCTGGTTCTGGTTAC+TGG | 0.209450 | 8.4:-48458811 | MS.gene32576:CDS |
GGTGCAGGCAAGGCGAATTT+TGG | 0.246467 | 8.4:-48458899 | MS.gene32576:intron |
TTTGATCCTTGGGTTCTTCC+AGG | 0.310994 | 8.4:-48459226 | MS.gene32576:intron |
CTTGTACAAGTTTGATCCTT+GGG | 0.318790 | 8.4:-48459236 | MS.gene32576:CDS |
ATTGAATCCTCACCGGAGTT+TGG | 0.319990 | 8.4:-48458259 | MS.gene32576:CDS |
CCAAACAGAGTTGCTGGTTC+TGG | 0.323652 | 8.4:-48458818 | MS.gene32576:CDS |
AAGTCAATTTCAGCAATAAT+TGG | 0.338246 | 8.4:+48459256 | None:intergenic |
TTGTTAAGTTTCATCATAAT+GGG | 0.344250 | 8.4:-48459403 | None:intergenic |
TTTGTTAAGTTTCATCATAA+TGG | 0.350596 | 8.4:-48459404 | None:intergenic |
CGAAATGTTGGACTCGTTCC+TGG | 0.353931 | 8.4:-48458407 | MS.gene32576:CDS |
CTGTTTGGTCTAGAACCATT+TGG | 0.354289 | 8.4:+48458833 | None:intergenic |
CATTCTTTGCTTGAAAATGT+TGG | 0.363451 | 8.4:+48458469 | None:intergenic |
AGCTCTGATCATCAATTTCC+AGG | 0.378659 | 8.4:+48458389 | None:intergenic |
CTTTGAACCTCTTCGTCGGT+GGG | 0.389977 | 8.4:+48458130 | None:intergenic |
TATCTATGTCGTAAAGTTGC+AGG | 0.400628 | 8.4:-48459295 | MS.gene32576:CDS |
TTTGGATATTTCCTGTCCCT+TGG | 0.404470 | 8.4:+48458851 | None:intergenic |
TCTCCTCTTGCTGTAGCATT+CGG | 0.405277 | 8.4:+48458341 | None:intergenic |
TCCTCACCGGAGTTTGGATT+AGG | 0.414541 | 8.4:-48458253 | MS.gene32576:CDS |
CGTGCCACCGTTTGGTAACA+TGG | 0.418390 | 8.4:-48458176 | MS.gene32576:CDS |
CCAGAACCAGCAACTCTGTT+TGG | 0.423168 | 8.4:+48458818 | None:intergenic |
TCTAGACCAAACAGAGTTGC+TGG | 0.423965 | 8.4:-48458824 | MS.gene32576:CDS |
ATTGATGCAGCTTGATGATT+GGG | 0.428244 | 8.4:-48458539 | MS.gene32576:intron |
TATTGATGCAGCTTGATGAT+TGG | 0.443903 | 8.4:-48458540 | MS.gene32576:intron |
TGGATTAGGAAACCAGAGTC+AGG | 0.444473 | 8.4:-48458239 | MS.gene32576:CDS |
ACTTGTACAAGTTTGATCCT+TGG | 0.451700 | 8.4:-48459237 | MS.gene32576:CDS |
CTACAGCAAGAGGAGAAGTT+CGG | 0.456841 | 8.4:-48458334 | MS.gene32576:CDS |
TACAGCAAGAGGAGAAGTTC+GGG | 0.459516 | 8.4:-48458333 | MS.gene32576:CDS |
GTTCCTTCCGTGCCACCGTT+TGG | 0.466910 | 8.4:-48458184 | MS.gene32576:CDS |
GGGTTTCACAACATGGGTGC+TGG | 0.473359 | 8.4:-48458313 | MS.gene32576:CDS |
ACAACTGAAGGTAGAAAAGT+TGG | 0.474990 | 8.4:-48458761 | MS.gene32576:CDS |
AACAAGAAGCTCCTCATCAG+TGG | 0.476509 | 8.4:+48459321 | None:intergenic |
TTCGCCTTCATCGTCGTCCC+AGG | 0.477914 | 8.4:-48458434 | MS.gene32576:CDS |
GCTTTGAACCTCTTCGTCGG+TGG | 0.485096 | 8.4:+48458129 | None:intergenic |
TGTGAAAGAGGATCTCTCTC+TGG | 0.490458 | 8.4:+48459376 | None:intergenic |
GTTTGGTAACATGGACTTGT+CGG | 0.494850 | 8.4:-48458167 | MS.gene32576:CDS |
AGTCAGGGGATGCTGAATTA+CGG | 0.495349 | 8.4:-48458223 | MS.gene32576:CDS |
GCTTCGCGAAAACACAATCT+TGG | 0.501596 | 8.4:-48458650 | MS.gene32576:CDS |
GAAGTTCGGGTTTCACAACA+TGG | 0.506769 | 8.4:-48458320 | MS.gene32576:CDS |
TATATTGGCAAAGCACCAAA+AGG | 0.512258 | 8.4:-48458716 | MS.gene32576:CDS |
GGTAAACTCAACTGTGAAAG+AGG | 0.512342 | 8.4:+48459364 | None:intergenic |
ATTTCTTCAGTCCAAGGGAC+AGG | 0.517559 | 8.4:-48458862 | MS.gene32576:CDS |
AATTCAGCATCCCCTGACTC+TGG | 0.524401 | 8.4:+48458227 | None:intergenic |
GACAAAATTATCACAACTGA+AGG | 0.526909 | 8.4:-48458773 | MS.gene32576:CDS |
AGTCCAACATTTCGTCCACC+TGG | 0.531736 | 8.4:+48458416 | None:intergenic |
TCAAGCAAAGAATGCAGCAA+TGG | 0.536044 | 8.4:-48458460 | MS.gene32576:CDS |
CAGATTCTTCCCCACTGATG+AGG | 0.543031 | 8.4:-48459332 | MS.gene32576:CDS |
GTGAGGATTCAATATCTGTC+GGG | 0.549879 | 8.4:+48458269 | None:intergenic |
ATCAGAGCTTTGCATTGCCG+CGG | 0.552759 | 8.4:-48458375 | MS.gene32576:CDS |
GTCCCAGGTGGACGAAATGT+TGG | 0.553604 | 8.4:-48458419 | MS.gene32576:CDS |
AATGGTATTTCTTCAGTCCA+AGG | 0.554883 | 8.4:-48458868 | MS.gene32576:CDS |
ACAAGAAGCTCCTCATCAGT+GGG | 0.557935 | 8.4:+48459322 | None:intergenic |
GCTGCTTTGAACCTCTTCGT+CGG | 0.558434 | 8.4:+48458126 | None:intergenic |
TCCACCTGGGACGACGATGA+AGG | 0.560826 | 8.4:+48458430 | None:intergenic |
GGTGAGGATTCAATATCTGT+CGG | 0.563156 | 8.4:+48458268 | None:intergenic |
ACTCCGAATGCTACAGCAAG+AGG | 0.568493 | 8.4:-48458344 | MS.gene32576:CDS |
TCAGAGCTTTGCATTGCCGC+GGG | 0.574657 | 8.4:-48458374 | MS.gene32576:CDS |
GACAAGTCCATGTTACCAAA+CGG | 0.575738 | 8.4:+48458169 | None:intergenic |
TTTGAACCTCTTCGTCGGTG+GGG | 0.576389 | 8.4:+48458131 | None:intergenic |
TTACCAAACGGTGGCACGGA+AGG | 0.576728 | 8.4:+48458181 | None:intergenic |
GGATTAGGAAACCAGAGTCA+GGG | 0.583546 | 8.4:-48458238 | MS.gene32576:CDS |
CAAGAACCCCACCGACGAAG+AGG | 0.586414 | 8.4:-48458137 | None:intergenic |
ATGGTATTTCTTCAGTCCAA+GGG | 0.588129 | 8.4:-48458867 | MS.gene32576:CDS |
AGGGACAGGAAATATCCAAA+TGG | 0.592563 | 8.4:-48458848 | MS.gene32576:CDS |
TCTGGTTACTGGAAAGCCAC+AGG | 0.607999 | 8.4:-48458800 | MS.gene32576:CDS |
GCCTTCATCGTCGTCCCAGG+TGG | 0.609301 | 8.4:-48458431 | MS.gene32576:CDS |
CATGTTACCAAACGGTGGCA+CGG | 0.615690 | 8.4:+48458177 | None:intergenic |
GTCCAACATTTCGTCCACCT+GGG | 0.623948 | 8.4:+48458417 | None:intergenic |
TAATTACCTGGAAGAACCCA+AGG | 0.624355 | 8.4:+48459220 | None:intergenic |
GACAGATATTGAATCCTCAC+CGG | 0.626126 | 8.4:-48458266 | MS.gene32576:CDS |
GATTAGGAAACCAGAGTCAG+GGG | 0.641898 | 8.4:-48458237 | MS.gene32576:CDS |
TGGTAACATGGACTTGTCGG+CGG | 0.643282 | 8.4:-48458164 | MS.gene32576:CDS |
GTGGGGAAGAATCTGAAACC+AGG | 0.652605 | 8.4:+48459340 | None:intergenic |
TCACAGTTGAGTTTACCACC+TGG | 0.654718 | 8.4:-48459358 | MS.gene32576:CDS |
TGGTTTCCTAATCCAAACTC+CGG | 0.659176 | 8.4:+48458247 | None:intergenic |
TCCTAATCCAAACTCCGGTG+AGG | 0.662436 | 8.4:+48458252 | None:intergenic |
AAGTTCGGGTTTCACAACAT+GGG | 0.678618 | 8.4:-48458319 | MS.gene32576:CDS |
ATTCGGAGTGATGTTACCCG+CGG | 0.710388 | 8.4:+48458358 | None:intergenic |
AAGTCCATGTTACCAAACGG+TGG | 0.730264 | 8.4:+48458172 | None:intergenic |
GGGAAGAATCTGAAACCAGG+TGG | 0.741808 | 8.4:+48459343 | None:intergenic |
CAAGAAGCTCCTCATCAGTG+GGG | 0.747868 | 8.4:+48459323 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATTTTAACATTGTTGTTA+TGG | - | chr8.4:48458607-48458626 | MS.gene32576:intron | 20.0% |
! | AAGTCAATTTCAGCAATAAT+TGG | + | chr8.4:48458280-48458299 | None:intergenic | 25.0% |
! | CAAAAGGAACAAAAACTAAT+TGG | - | chr8.4:48458833-48458852 | MS.gene32576:CDS | 25.0% |
! | CTGAAATTCTGACAATAATA+CGG | - | chr8.4:48458494-48458513 | MS.gene32576:CDS | 25.0% |
!!! | AAAGCACTTGTTTTCTATAT+TGG | - | chr8.4:48458802-48458821 | MS.gene32576:CDS | 25.0% |
!!! | CAATTAGTTTTTGTTCCTTT+TGG | + | chr8.4:48458835-48458854 | None:intergenic | 25.0% |
!!! | TAACATTGTTGTTATGGTTT+TGG | - | chr8.4:48458613-48458632 | MS.gene32576:intron | 25.0% |
CAGGTAATTATCACCAATTT+AGG | - | chr8.4:48458326-48458345 | MS.gene32576:CDS | 30.0% | |
CATTCTTTGCTTGAAAATGT+TGG | + | chr8.4:48459067-48459086 | None:intergenic | 30.0% | |
CTCATCAATAAAAATGAGCA+AGG | + | chr8.4:48458945-48458964 | None:intergenic | 30.0% | |
GACAAAATTATCACAACTGA+AGG | - | chr8.4:48458760-48458779 | MS.gene32576:CDS | 30.0% | |
TAACTATTGCAAAATCACAG+TGG | + | chr8.4:48458441-48458460 | None:intergenic | 30.0% | |
! | CTAAATTGGTGATAATTACC+TGG | + | chr8.4:48458328-48458347 | None:intergenic | 30.0% |
AATGGTATTTCTTCAGTCCA+AGG | - | chr8.4:48458665-48458684 | MS.gene32576:CDS | 35.0% | |
ACAACTGAAGGTAGAAAAGT+TGG | - | chr8.4:48458772-48458791 | MS.gene32576:CDS | 35.0% | |
ACTTGTACAAGTTTGATCCT+TGG | - | chr8.4:48458296-48458315 | MS.gene32576:CDS | 35.0% | |
ATGGTATTTCTTCAGTCCAA+GGG | - | chr8.4:48458666-48458685 | MS.gene32576:CDS | 35.0% | |
CTTGTACAAGTTTGATCCTT+GGG | - | chr8.4:48458297-48458316 | MS.gene32576:CDS | 35.0% | |
TATCTATGTCGTAAAGTTGC+AGG | - | chr8.4:48458238-48458257 | MS.gene32576:CDS | 35.0% | |
TCTGCAATTGCAACCTAAAT+TGG | + | chr8.4:48458342-48458361 | None:intergenic | 35.0% | |
! | ATTGATGCAGCTTGATGATT+GGG | - | chr8.4:48458994-48459013 | MS.gene32576:intron | 35.0% |
! | GATAATTTTGTCTGTTCCTG+TGG | + | chr8.4:48458752-48458771 | None:intergenic | 35.0% |
! | TATATTGGCAAAGCACCAAA+AGG | - | chr8.4:48458817-48458836 | MS.gene32576:CDS | 35.0% |
! | TATTGATGCAGCTTGATGAT+TGG | - | chr8.4:48458993-48459012 | MS.gene32576:intron | 35.0% |
!! | CGAATTTTGGTGAGAAAGAA+TGG | - | chr8.4:48458647-48458666 | MS.gene32576:CDS | 35.0% |
AGGGACAGGAAATATCCAAA+TGG | - | chr8.4:48458685-48458704 | MS.gene32576:CDS | 40.0% | |
CCGTAAGTTTGTCAGAATCA+CGG | - | chr8.4:48458411-48458430 | MS.gene32576:CDS | 40.0% | |
CCGTGATTCTGACAAACTTA+CGG | + | chr8.4:48458414-48458433 | None:intergenic | 40.0% | |
GAAAAACTCAAGCTCGCAAA+AGG | - | chr8.4:48459036-48459055 | MS.gene32576:intron | 40.0% | |
GACAAGTCCATGTTACCAAA+CGG | + | chr8.4:48459367-48459386 | None:intergenic | 40.0% | |
GACAGATATTGAATCCTCAC+CGG | - | chr8.4:48459267-48459286 | MS.gene32576:CDS | 40.0% | |
GGTAAACTCAACTGTGAAAG+AGG | + | chr8.4:48458172-48458191 | None:intergenic | 40.0% | |
GGTGAGGATTCAATATCTGT+CGG | + | chr8.4:48459268-48459287 | None:intergenic | 40.0% | |
GTGAGGATTCAATATCTGTC+GGG | + | chr8.4:48459267-48459286 | None:intergenic | 40.0% | |
TAATTACCTGGAAGAACCCA+AGG | + | chr8.4:48458316-48458335 | None:intergenic | 40.0% | |
TCAAGCAAAGAATGCAGCAA+TGG | - | chr8.4:48459073-48459092 | MS.gene32576:intron | 40.0% | |
TGGTTTCCTAATCCAAACTC+CGG | + | chr8.4:48459289-48459308 | None:intergenic | 40.0% | |
TTTGGATATTTCCTGTCCCT+TGG | + | chr8.4:48458685-48458704 | None:intergenic | 40.0% | |
! | AAGTTCGGGTTTCACAACAT+GGG | - | chr8.4:48459214-48459233 | MS.gene32576:intron | 40.0% |
! | AGCTCTGATCATCAATTTCC+AGG | + | chr8.4:48459147-48459166 | None:intergenic | 40.0% |
! | CTGTTTGGTCTAGAACCATT+TGG | + | chr8.4:48458703-48458722 | None:intergenic | 40.0% |
! | GTTTGGTAACATGGACTTGT+CGG | - | chr8.4:48459366-48459385 | MS.gene32576:CDS | 40.0% |
! | TGCTGGACTTTTCTCTGATT+GGG | - | chr8.4:48459237-48459256 | MS.gene32576:CDS | 40.0% |
!!! | TGTTGTTATGGTTTTGGTGC+AGG | - | chr8.4:48458619-48458638 | MS.gene32576:intron | 40.0% |
AACAAGAAGCTCCTCATCAG+TGG | + | chr8.4:48458215-48458234 | None:intergenic | 45.0% | |
AAGTCCATGTTACCAAACGG+TGG | + | chr8.4:48459364-48459383 | None:intergenic | 45.0% | |
ACAAGAAGCTCCTCATCAGT+GGG | + | chr8.4:48458214-48458233 | None:intergenic | 45.0% | |
AGTCAGGGGATGCTGAATTA+CGG | - | chr8.4:48459310-48459329 | MS.gene32576:CDS | 45.0% | |
ATTGAATCCTCACCGGAGTT+TGG | - | chr8.4:48459274-48459293 | MS.gene32576:CDS | 45.0% | |
ATTTCTTCAGTCCAAGGGAC+AGG | - | chr8.4:48458671-48458690 | MS.gene32576:CDS | 45.0% | |
CTACAGCAAGAGGAGAAGTT+CGG | - | chr8.4:48459199-48459218 | MS.gene32576:intron | 45.0% | |
GATTAGGAAACCAGAGTCAG+GGG | - | chr8.4:48459296-48459315 | MS.gene32576:CDS | 45.0% | |
GCTTCGCGAAAACACAATCT+TGG | - | chr8.4:48458883-48458902 | MS.gene32576:CDS | 45.0% | |
GGATTAGGAAACCAGAGTCA+GGG | - | chr8.4:48459295-48459314 | MS.gene32576:CDS | 45.0% | |
TACAGCAAGAGGAGAAGTTC+GGG | - | chr8.4:48459200-48459219 | MS.gene32576:intron | 45.0% | |
TCACAGTTGAGTTTACCACC+TGG | - | chr8.4:48458175-48458194 | MS.gene32576:CDS | 45.0% | |
TCTAGACCAAACAGAGTTGC+TGG | - | chr8.4:48458709-48458728 | MS.gene32576:CDS | 45.0% | |
TGTGAAAGAGGATCTCTCTC+TGG | + | chr8.4:48458160-48458179 | None:intergenic | 45.0% | |
TTTGATCCTTGGGTTCTTCC+AGG | - | chr8.4:48458307-48458326 | MS.gene32576:CDS | 45.0% | |
! | GAAGTTCGGGTTTCACAACA+TGG | - | chr8.4:48459213-48459232 | MS.gene32576:intron | 45.0% |
! | GTGCTGGACTTTTCTCTGAT+TGG | - | chr8.4:48459236-48459255 | MS.gene32576:CDS | 45.0% |
! | TCTCCTCTTGCTGTAGCATT+CGG | + | chr8.4:48459195-48459214 | None:intergenic | 45.0% |
! | TGGATTAGGAAACCAGAGTC+AGG | - | chr8.4:48459294-48459313 | MS.gene32576:CDS | 45.0% |
!!! | TTATGGTTTTGGTGCAGGCA+AGG | - | chr8.4:48458624-48458643 | MS.gene32576:intron | 45.0% |
AATTCAGCATCCCCTGACTC+TGG | + | chr8.4:48459309-48459328 | None:intergenic | 50.0% | |
ACTCCGAATGCTACAGCAAG+AGG | - | chr8.4:48459189-48459208 | MS.gene32576:intron | 50.0% | |
AGTCCAACATTTCGTCCACC+TGG | + | chr8.4:48459120-48459139 | None:intergenic | 50.0% | |
ATCAGAGCTTTGCATTGCCG+CGG | - | chr8.4:48459158-48459177 | MS.gene32576:intron | 50.0% | |
ATTCGGAGTGATGTTACCCG+CGG | + | chr8.4:48459178-48459197 | None:intergenic | 50.0% | |
CAAGAAGCTCCTCATCAGTG+GGG | + | chr8.4:48458213-48458232 | None:intergenic | 50.0% | |
CAGATTCTTCCCCACTGATG+AGG | - | chr8.4:48458201-48458220 | MS.gene32576:CDS | 50.0% | |
CATGTTACCAAACGGTGGCA+CGG | + | chr8.4:48459359-48459378 | None:intergenic | 50.0% | |
CCAGAACCAGCAACTCTGTT+TGG | + | chr8.4:48458718-48458737 | None:intergenic | 50.0% | |
CGAAATGTTGGACTCGTTCC+TGG | - | chr8.4:48459126-48459145 | MS.gene32576:intron | 50.0% | |
GTCCAACATTTCGTCCACCT+GGG | + | chr8.4:48459119-48459138 | None:intergenic | 50.0% | |
TCCTAATCCAAACTCCGGTG+AGG | + | chr8.4:48459284-48459303 | None:intergenic | 50.0% | |
TCCTCACCGGAGTTTGGATT+AGG | - | chr8.4:48459280-48459299 | MS.gene32576:CDS | 50.0% | |
TCTGGTTACTGGAAAGCCAC+AGG | - | chr8.4:48458733-48458752 | MS.gene32576:CDS | 50.0% | |
TGGTAACATGGACTTGTCGG+CGG | - | chr8.4:48459369-48459388 | MS.gene32576:CDS | 50.0% | |
! | GGGAAGAATCTGAAACCAGG+TGG | + | chr8.4:48458193-48458212 | None:intergenic | 50.0% |
! | GTGGGGAAGAATCTGAAACC+AGG | + | chr8.4:48458196-48458215 | None:intergenic | 50.0% |
!! | CCAAACAGAGTTGCTGGTTC+TGG | - | chr8.4:48458715-48458734 | MS.gene32576:CDS | 50.0% |
!! | GAGTTGCTGGTTCTGGTTAC+TGG | - | chr8.4:48458722-48458741 | MS.gene32576:CDS | 50.0% |
GGGTTTCACAACATGGGTGC+TGG | - | chr8.4:48459220-48459239 | MS.gene32576:intron | 55.0% | |
GTCCCAGGTGGACGAAATGT+TGG | - | chr8.4:48459114-48459133 | MS.gene32576:intron | 55.0% | |
TCAGAGCTTTGCATTGCCGC+GGG | - | chr8.4:48459159-48459178 | MS.gene32576:intron | 55.0% | |
TTACCAAACGGTGGCACGGA+AGG | + | chr8.4:48459355-48459374 | None:intergenic | 55.0% | |
! | CGTGCCACCGTTTGGTAACA+TGG | - | chr8.4:48459357-48459376 | MS.gene32576:CDS | 55.0% |
! | GGTGCAGGCAAGGCGAATTT+TGG | - | chr8.4:48458634-48458653 | MS.gene32576:intron | 55.0% |
CTCTTCGTCGGTGGGGTTCT+TGG | + | chr8.4:48459398-48459417 | None:intergenic | 60.0% | |
GTTCCTTCCGTGCCACCGTT+TGG | - | chr8.4:48459349-48459368 | MS.gene32576:CDS | 60.0% | |
TCCACCTGGGACGACGATGA+AGG | + | chr8.4:48459106-48459125 | None:intergenic | 60.0% | |
TTCGCCTTCATCGTCGTCCC+AGG | - | chr8.4:48459099-48459118 | MS.gene32576:intron | 60.0% | |
GCCTTCATCGTCGTCCCAGG+TGG | - | chr8.4:48459102-48459121 | MS.gene32576:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 48458138 | 48459417 | 48458138 | ID=MS.gene32576 |
chr8.4 | mRNA | 48458138 | 48459417 | 48458138 | ID=MS.gene32576.t1;Parent=MS.gene32576 |
chr8.4 | exon | 48459227 | 48459417 | 48459227 | ID=MS.gene32576.t1.exon1;Parent=MS.gene32576.t1 |
chr8.4 | CDS | 48459227 | 48459417 | 48459227 | ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1 |
chr8.4 | exon | 48458640 | 48458914 | 48458640 | ID=MS.gene32576.t1.exon2;Parent=MS.gene32576.t1 |
chr8.4 | CDS | 48458640 | 48458914 | 48458640 | ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1 |
chr8.4 | exon | 48458138 | 48458551 | 48458138 | ID=MS.gene32576.t1.exon3;Parent=MS.gene32576.t1 |
chr8.4 | CDS | 48458138 | 48458551 | 48458138 | ID=cds.MS.gene32576.t1;Parent=MS.gene32576.t1 |
Gene Sequence |
Protein sequence |