Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32684.t1 | XP_003603312.1 | 97.5 | 393 | 10 | 0 | 13 | 405 | 253 | 645 | 1.70E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32684.t1 | P62598 | 24.4 | 409 | 206 | 16 | 13 | 393 | 250 | 583 | 2.2e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32684.t1 | G7J9W3 | 97.5 | 393 | 10 | 0 | 13 | 405 | 253 | 645 | 1.2e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059061 | MS.gene32684 | 0.820944 | 5.25E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32684.t1 | MTR_3g106220 | 97.455 | 393 | 10 | 0 | 13 | 405 | 253 | 645 | 0.0 | 789 |
| MS.gene32684.t1 | MTR_1g013170 | 30.792 | 341 | 131 | 15 | 13 | 337 | 246 | 497 | 4.06e-21 | 95.5 |
| MS.gene32684.t1 | MTR_2g450070 | 25.806 | 434 | 239 | 15 | 26 | 402 | 278 | 685 | 2.37e-16 | 81.6 |
| MS.gene32684.t1 | MTR_1g013180 | 35.632 | 174 | 79 | 10 | 22 | 173 | 399 | 561 | 8.46e-13 | 70.5 |
| MS.gene32684.t1 | MTR_1g013180 | 32.394 | 213 | 91 | 11 | 194 | 392 | 501 | 674 | 2.29e-11 | 65.9 |
| MS.gene32684.t1 | MTR_2g450070 | 29.661 | 236 | 129 | 7 | 26 | 243 | 278 | 494 | 5.30e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 111 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGATCCGGGAATTTATT+TGG | 0.160454 | 3.1:+84307739 | None:intergenic |
| GCAAGATAAGATGAAATTAT+TGG | 0.247006 | 3.1:-84306439 | MS.gene32684:CDS |
| TCAAGCGACGTACCGTTATC+TGG | 0.285277 | 3.1:-84307520 | MS.gene32684:CDS |
| TCCAGCATGCTTCATTTGTA+TGG | 0.304531 | 3.1:+84307168 | None:intergenic |
| ATTCCTTGGGAGTGCATATC+TGG | 0.307526 | 3.1:+84307385 | None:intergenic |
| TATTTGAGAATGGGTGGTTC+TGG | 0.310707 | 3.1:-84308063 | MS.gene32684:CDS |
| TTGAAGAGAAAGAATTTGTT+TGG | 0.311046 | 3.1:+84307494 | None:intergenic |
| CGTTAATCAGAATATTCTTC+AGG | 0.324708 | 3.1:-84307860 | MS.gene32684:CDS |
| GCTAGTATGGTGGCAGCCTT+AGG | 0.331673 | 3.1:-84308102 | MS.gene32684:CDS |
| GTTGATCCGGGAATTTATTT+GGG | 0.335841 | 3.1:+84307740 | None:intergenic |
| TCCCATCCCAAATAAATTCC+CGG | 0.335864 | 3.1:-84307746 | MS.gene32684:CDS |
| CCCTTGCAAGCGGGGTATCC+TGG | 0.337535 | 3.1:-84307418 | MS.gene32684:CDS |
| AATTGTTTAAATTACGTGAT+TGG | 0.348210 | 3.1:+84307923 | None:intergenic |
| GCAAAACTTGGCCGTTGATC+CGG | 0.363698 | 3.1:+84307727 | None:intergenic |
| AACTCTCTTGCTCCAGTTAA+CGG | 0.366243 | 3.1:-84307253 | MS.gene32684:CDS |
| CTGGAATTTAAGTTGATCAT+TGG | 0.373200 | 3.1:+84307897 | None:intergenic |
| TCCTTCGGGGCTTCTTCAGT+TGG | 0.386130 | 3.1:-84307947 | MS.gene32684:CDS |
| CTGAAGAATATTCTGATTAA+CGG | 0.389124 | 3.1:+84307861 | None:intergenic |
| TCTTGGTTCACTGGAATACT+TGG | 0.389557 | 3.1:-84307068 | MS.gene32684:CDS |
| AACGGTAATTTGCCATTTCA+AGG | 0.393348 | 3.1:-84307334 | MS.gene32684:CDS |
| CTGCCACCATACTAGCTTGT+TGG | 0.395940 | 3.1:+84308109 | None:intergenic |
| CGGTCTTCCCATCCTTGAAA+TGG | 0.402240 | 3.1:+84307322 | None:intergenic |
| GAAAGAAAACACGGAGGTAT+AGG | 0.402851 | 3.1:-84307637 | MS.gene32684:CDS |
| AACACTCCAACTAGTCTTAA+CGG | 0.404206 | 3.1:-84307982 | MS.gene32684:CDS |
| TTCTAATAATCTTGGTTCAC+TGG | 0.404941 | 3.1:-84307077 | MS.gene32684:CDS |
| ATTCTGATTAACGGGAGTTA+TGG | 0.410279 | 3.1:+84307870 | None:intergenic |
| CCTTCGGGGCTTCTTCAGTT+GGG | 0.414763 | 3.1:-84307946 | MS.gene32684:CDS |
| CAAGATAAGATGAAATTATT+GGG | 0.416183 | 3.1:-84306438 | MS.gene32684:CDS |
| AAGGTAGGCACGGTGATAAT+TGG | 0.437512 | 3.1:-84307543 | MS.gene32684:CDS |
| AAACACGGAGGTATAGGAAT+AGG | 0.439930 | 3.1:-84307631 | MS.gene32684:CDS |
| TGCAAACCAACAAGCTAGTA+TGG | 0.442595 | 3.1:-84308115 | MS.gene32684:CDS |
| AGGTGGAGCTAGTTGTTGTC+TGG | 0.446742 | 3.1:+84307212 | None:intergenic |
| AGATCAATCTTATTTGAGAA+TGG | 0.446802 | 3.1:-84308073 | MS.gene32684:CDS |
| GAACTAGAGGTGGCAAAACT+TGG | 0.447157 | 3.1:+84307715 | None:intergenic |
| TGAAGAATATTCTGATTAAC+GGG | 0.453613 | 3.1:+84307862 | None:intergenic |
| GATCAATCTTATTTGAGAAT+GGG | 0.453918 | 3.1:-84308072 | MS.gene32684:CDS |
| ATCCGGGAATTTATTTGGGA+TGG | 0.454627 | 3.1:+84307744 | None:intergenic |
| GGTAAGTAGCATCCTGATTA+CGG | 0.456384 | 3.1:+84307302 | None:intergenic |
| GCTTCTTTGCCCTTGCAAGC+GGG | 0.456904 | 3.1:-84307427 | MS.gene32684:CDS |
| GGAGGTATAGGAATAGGATA+TGG | 0.457148 | 3.1:-84307625 | MS.gene32684:CDS |
| TGCTGGCTTATGATATTAGC+TGG | 0.457220 | 3.1:+84307106 | None:intergenic |
| GGCTTCTTTGCCCTTGCAAG+CGG | 0.465152 | 3.1:-84307428 | MS.gene32684:CDS |
| CAAAACTTGGCCGTTGATCC+GGG | 0.465888 | 3.1:+84307728 | None:intergenic |
| AATTCACCTGAGTATATAAA+CGG | 0.467724 | 3.1:-84307352 | MS.gene32684:CDS |
| GAGCTAGTTGTTGTCTGGCC+TGG | 0.468240 | 3.1:+84307217 | None:intergenic |
| GATTATTAGAAAACTTCTGC+TGG | 0.476268 | 3.1:+84307089 | None:intergenic |
| AATTATCCCACTAGGTGAAA+AGG | 0.479567 | 3.1:+84308014 | None:intergenic |
| ACACTCCAACTAGTCTTAAC+GGG | 0.480069 | 3.1:-84307981 | MS.gene32684:CDS |
| CCAGCATGCTTCATTTGTAT+GGG | 0.481160 | 3.1:+84307169 | None:intergenic |
| AGGATGGGAAGACCGTAATC+AGG | 0.483908 | 3.1:-84307314 | MS.gene32684:CDS |
| ACCAGGATACCCCGCTTGCA+AGG | 0.485505 | 3.1:+84307417 | None:intergenic |
| TGTTTGAGATACCGAGACTT+GGG | 0.488772 | 3.1:+84307686 | None:intergenic |
| TCCGGGAATTTATTTGGGAT+GGG | 0.491640 | 3.1:+84307745 | None:intergenic |
| CCATGCCCGTTAAGACTAGT+TGG | 0.492442 | 3.1:+84307976 | None:intergenic |
| CAGGGAATGCCAATGTCCAT+AGG | 0.498172 | 3.1:-84307841 | MS.gene32684:CDS |
| CCCATACAAATGAAGCATGC+TGG | 0.498373 | 3.1:-84307169 | MS.gene32684:CDS |
| GTTAATCAGAATATTCTTCA+GGG | 0.498546 | 3.1:-84307859 | MS.gene32684:CDS |
| TCTTTCTCTATGCTGGATCA+AGG | 0.503800 | 3.1:-84307562 | MS.gene32684:CDS |
| GTAATTTGCCATTTCAAGGA+TGG | 0.513037 | 3.1:-84307330 | MS.gene32684:CDS |
| GAACGTGGCAAGCCATCTCC+AGG | 0.523004 | 3.1:-84308257 | MS.gene32684:intron |
| TTTGTTTGGATTCCAGATAA+CGG | 0.525042 | 3.1:+84307508 | None:intergenic |
| ATACTTGGCGAGTTCAATGA+TGG | 0.533419 | 3.1:-84307053 | MS.gene32684:CDS |
| CTAGTATGGTGGCAGCCTTA+GGG | 0.534344 | 3.1:-84308101 | MS.gene32684:CDS |
| CTAGTTGTTGTCTGGCCTGG+TGG | 0.535200 | 3.1:+84307220 | None:intergenic |
| CTTCTTTGCCCTTGCAAGCG+GGG | 0.537483 | 3.1:-84307426 | MS.gene32684:CDS |
| TAATTTGCCATTTCAAGGAT+GGG | 0.541605 | 3.1:-84307329 | MS.gene32684:CDS |
| AAATTACCGTTTATATACTC+AGG | 0.541639 | 3.1:+84307346 | None:intergenic |
| TTGTTTGAGATACCGAGACT+TGG | 0.548378 | 3.1:+84307685 | None:intergenic |
| TAACGGGAGTTATGGCTGAC+TGG | 0.548521 | 3.1:+84307878 | None:intergenic |
| TACCACTCAAATGTTACTTG+TGG | 0.549615 | 3.1:-84307283 | MS.gene32684:CDS |
| CCAGGATACCCCGCTTGCAA+GGG | 0.561131 | 3.1:+84307418 | None:intergenic |
| CAAATAAATTCCCGGATCAA+CGG | 0.562184 | 3.1:-84307738 | MS.gene32684:CDS |
| AGTCTCGGTATCTCAAACAA+TGG | 0.562603 | 3.1:-84307682 | MS.gene32684:CDS |
| GGCGAGTTCAATGATGGGAC+AGG | 0.562860 | 3.1:-84307047 | MS.gene32684:intron |
| CAATCTTATTTGAGAATGGG+TGG | 0.565295 | 3.1:-84308069 | MS.gene32684:CDS |
| AGGGAATGCCAATGTCCATA+GGG | 0.567298 | 3.1:-84307840 | MS.gene32684:CDS |
| TTGCAAGTGATCAAACCCTA+TGG | 0.568247 | 3.1:+84307825 | None:intergenic |
| TCTCTATGCTGGATCAAGGT+AGG | 0.568314 | 3.1:-84307558 | MS.gene32684:CDS |
| TGATCACTTGCAAAACAGCA+AGG | 0.568375 | 3.1:-84307815 | MS.gene32684:CDS |
| AGATTGATCTGCACTCCCTA+AGG | 0.568615 | 3.1:+84308086 | None:intergenic |
| GACAACAACTAGCTCCACCT+TGG | 0.570450 | 3.1:-84307209 | MS.gene32684:CDS |
| CTCAAACAATGGCTTGATGT+CGG | 0.579465 | 3.1:-84307671 | MS.gene32684:CDS |
| TGTTCCTCCTTCAGATAACA+TGG | 0.580834 | 3.1:-84307449 | MS.gene32684:CDS |
| TATGCGATAATTACTCCGAC+GGG | 0.584211 | 3.1:-84306404 | MS.gene32684:CDS |
| CCAACTAGTCTTAACGGGCA+TGG | 0.588692 | 3.1:-84307976 | MS.gene32684:CDS |
| GTTTGAGATACCGAGACTTG+GGG | 0.591845 | 3.1:+84307687 | None:intergenic |
| TGATCAAACCCTATGGACAT+TGG | 0.593062 | 3.1:+84307832 | None:intergenic |
| AGAAAATTCTGAATGTTGAG+AGG | 0.594209 | 3.1:+84307582 | None:intergenic |
| ATATGCGATAATTACTCCGA+CGG | 0.598221 | 3.1:-84306405 | MS.gene32684:CDS |
| CCCAACTGAAGAAGCCCCGA+AGG | 0.603189 | 3.1:+84307946 | None:intergenic |
| AGATTACCAATTATCCCACT+AGG | 0.605896 | 3.1:+84308006 | None:intergenic |
| AAAGAAGCCATGTTATCTGA+AGG | 0.609057 | 3.1:+84307442 | None:intergenic |
| GATCACTTGCAAAACAGCAA+GGG | 0.610593 | 3.1:-84307814 | MS.gene32684:CDS |
| TGAGCTGCATTCAGTTAACT+CGG | 0.614968 | 3.1:+84307141 | None:intergenic |
| ATATCTGGCAACGAACCACC+AGG | 0.619562 | 3.1:+84307400 | None:intergenic |
| TTGCCAGATATGCACTCCCA+AGG | 0.620552 | 3.1:-84307388 | MS.gene32684:CDS |
| ATGCTGGATCAAGGTAGGCA+CGG | 0.622381 | 3.1:-84307553 | MS.gene32684:CDS |
| GATAAGATGAAATTATTGGG+TGG | 0.625103 | 3.1:-84306435 | MS.gene32684:CDS |
| ATCCACAAGTAACATTTGAG+TGG | 0.625700 | 3.1:+84307281 | None:intergenic |
| GAAGCCATGTTATCTGAAGG+AGG | 0.632238 | 3.1:+84307445 | None:intergenic |
| AAATATCACAAGGGAGAACG+TGG | 0.641409 | 3.1:-84308272 | MS.gene32684:CDS |
| TACTTGGCGAGTTCAATGAT+GGG | 0.644216 | 3.1:-84307052 | MS.gene32684:CDS |
| TTGCAAGCGGGGTATCCTGG+TGG | 0.644472 | 3.1:-84307415 | MS.gene32684:CDS |
| TTTGAGATACCGAGACTTGG+GGG | 0.680383 | 3.1:+84307688 | None:intergenic |
| TGAATGTCGAAAATATCACA+AGG | 0.689686 | 3.1:-84308282 | MS.gene32684:CDS |
| ACGCACCCTGAAAGAAAACA+CGG | 0.699020 | 3.1:-84307646 | MS.gene32684:CDS |
| AAACCAACAAGCTAGTATGG+TGG | 0.708833 | 3.1:-84308112 | MS.gene32684:CDS |
| GAATGTCGAAAATATCACAA+GGG | 0.725612 | 3.1:-84308281 | MS.gene32684:CDS |
| CTGTCACAAAGATACCCCGT+CGG | 0.726754 | 3.1:+84306389 | None:intergenic |
| ATGCGATAATTACTCCGACG+GGG | 0.780483 | 3.1:-84306403 | MS.gene32684:CDS |
| CACCCTGAAAGAAAACACGG+AGG | 0.809478 | 3.1:-84307643 | MS.gene32684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAATTTAGTATCCA+AGG | + | chr3.1:84307482-84307501 | None:intergenic | 15.0% |
| !! | TGAAATTTGAAGATTTAAAT+TGG | - | chr3.1:84307893-84307912 | MS.gene32684:CDS | 15.0% |
| !!! | ACATTTTTTGAATATAATGT+TGG | - | chr3.1:84307652-84307671 | MS.gene32684:CDS | 15.0% |
| !! | AAGAACATCAATGAAATATA+TGG | + | chr3.1:84307949-84307968 | None:intergenic | 20.0% |
| !! | AATTAGTAAAAATCATTCCT+TGG | + | chr3.1:84307303-84307322 | None:intergenic | 20.0% |
| !! | AATTGTTTAAATTACGTGAT+TGG | + | chr3.1:84306751-84306770 | None:intergenic | 20.0% |
| !! | AATTTGAAGATTTAAATTGG+TGG | - | chr3.1:84307896-84307915 | MS.gene32684:CDS | 20.0% |
| !! | ATTAGTAAAAATCATTCCTT+GGG | + | chr3.1:84307302-84307321 | None:intergenic | 20.0% |
| !! | CAAGATAAGATGAAATTATT+GGG | - | chr3.1:84308233-84308252 | MS.gene32684:intron | 20.0% |
| !!! | CATGTTGTTTTATTTAACTT+AGG | - | chr3.1:84308094-84308113 | MS.gene32684:CDS | 20.0% |
| !!! | TGTATAGTTTTTTTTGCATA+TGG | - | chr3.1:84307711-84307730 | MS.gene32684:CDS | 20.0% |
| ! | AAAAAATTTAGTATCCAAGG+TGG | + | chr3.1:84307479-84307498 | None:intergenic | 25.0% |
| ! | AAATTACCGTTTATATACTC+AGG | + | chr3.1:84307328-84307347 | None:intergenic | 25.0% |
| ! | AACATGGTATCAAATTACTA+TGG | + | chr3.1:84308198-84308217 | None:intergenic | 25.0% |
| ! | AATTCACCTGAGTATATAAA+CGG | - | chr3.1:84307319-84307338 | MS.gene32684:CDS | 25.0% |
| ! | ACATGGTATCAAATTACTAT+GGG | + | chr3.1:84308197-84308216 | None:intergenic | 25.0% |
| ! | ATTTCTTTCACTGAATGTTT+CGG | - | chr3.1:84306479-84306498 | MS.gene32684:intron | 25.0% |
| ! | CTGAAGAATATTCTGATTAA+CGG | + | chr3.1:84306813-84306832 | None:intergenic | 25.0% |
| ! | GCAAGATAAGATGAAATTAT+TGG | - | chr3.1:84308232-84308251 | MS.gene32684:intron | 25.0% |
| ! | GTTAATCAGAATATTCTTCA+GGG | - | chr3.1:84306812-84306831 | MS.gene32684:intron | 25.0% |
| ! | TAAAGAACTAGAAAAATACC+TGG | + | chr3.1:84306435-84306454 | None:intergenic | 25.0% |
| ! | TATAATCTAATCAGTATGTG+TGG | + | chr3.1:84307774-84307793 | None:intergenic | 25.0% |
| ! | TGAAGAATATTCTGATTAAC+GGG | + | chr3.1:84306812-84306831 | None:intergenic | 25.0% |
| !! | AGATCAATCTTATTTGAGAA+TGG | - | chr3.1:84306598-84306617 | MS.gene32684:intron | 25.0% |
| !! | CAGAAGTTTTCTAATAATCT+TGG | - | chr3.1:84307586-84307605 | MS.gene32684:CDS | 25.0% |
| !! | GATCAATCTTATTTGAGAAT+GGG | - | chr3.1:84306599-84306618 | MS.gene32684:intron | 25.0% |
| !! | TTGAAGAGAAAGAATTTGTT+TGG | + | chr3.1:84307180-84307199 | None:intergenic | 25.0% |
| !!! | AAACATTTGTTTTTCTATCC+TGG | - | chr3.1:84308038-84308057 | MS.gene32684:CDS | 25.0% |
| !!! | AATGATTTTAAGTCTTCTCT+CGG | + | chr3.1:84307860-84307879 | None:intergenic | 25.0% |
| ACAACATGCTATATACTCAA+CGG | + | chr3.1:84308082-84308101 | None:intergenic | 30.0% | |
| ACTATGGGAGCAAAATATTT+AGG | + | chr3.1:84308182-84308201 | None:intergenic | 30.0% | |
| AGAAAATTCTGAATGTTGAG+AGG | + | chr3.1:84307092-84307111 | None:intergenic | 30.0% | |
| ATCCTATGTGAATGTTCTAA+AGG | + | chr3.1:84308016-84308035 | None:intergenic | 30.0% | |
| CAAGGAAATAATGTTTGAGA+TGG | + | chr3.1:84307750-84307769 | None:intergenic | 30.0% | |
| CGTTAATCAGAATATTCTTC+AGG | - | chr3.1:84306811-84306830 | MS.gene32684:intron | 30.0% | |
| GAAACATTCAGTGAAAGAAA+TGG | + | chr3.1:84306480-84306499 | None:intergenic | 30.0% | |
| GATAAGATGAAATTATTGGG+TGG | - | chr3.1:84308236-84308255 | MS.gene32684:intron | 30.0% | |
| GATTATTAGAAAACTTCTGC+TGG | + | chr3.1:84307585-84307604 | None:intergenic | 30.0% | |
| TTCATTGATGTTCTTTGTGA+TGG | - | chr3.1:84307954-84307973 | MS.gene32684:CDS | 30.0% | |
| TTCTAATAATCTTGGTTCAC+TGG | - | chr3.1:84307594-84307613 | MS.gene32684:CDS | 30.0% | |
| TTTCTTTCACTGAATGTTTC+GGG | - | chr3.1:84306480-84306499 | MS.gene32684:intron | 30.0% | |
| TTTGTTTGGATTCCAGATAA+CGG | + | chr3.1:84307166-84307185 | None:intergenic | 30.0% | |
| ! | AGAATTTTCTTTCTCTATGC+TGG | - | chr3.1:84307102-84307121 | MS.gene32684:CDS | 30.0% |
| ! | AGCAAAATATTTAGGACAAG+GGG | + | chr3.1:84308174-84308193 | None:intergenic | 30.0% |
| ! | GAGCAAAATATTTAGGACAA+GGG | + | chr3.1:84308175-84308194 | None:intergenic | 30.0% |
| ! | TAATTTGCCATTTCAAGGAT+GGG | - | chr3.1:84307342-84307361 | MS.gene32684:CDS | 30.0% |
| ! | TTGTTTTCACATCAGTATTC+AGG | + | chr3.1:84306901-84306920 | None:intergenic | 30.0% |
| !! | AATGTTTCGGGTTTATGAAA+TGG | - | chr3.1:84306492-84306511 | MS.gene32684:intron | 30.0% |
| !! | ATGATTTTAAGTCTTCTCTC+GGG | + | chr3.1:84307859-84307878 | None:intergenic | 30.0% |
| !! | CTGGAATTTAAGTTGATCAT+TGG | + | chr3.1:84306777-84306796 | None:intergenic | 30.0% |
| !! | TTTGTTTTTCTATCCTGGAT+TGG | - | chr3.1:84308043-84308062 | MS.gene32684:CDS | 30.0% |
| AAAGAAGCCATGTTATCTGA+AGG | + | chr3.1:84307232-84307251 | None:intergenic | 35.0% | |
| AATTATCCCACTAGGTGAAA+AGG | + | chr3.1:84306660-84306679 | None:intergenic | 35.0% | |
| ACAAATATAACCATGCTGAC+TGG | + | chr3.1:84307830-84307849 | None:intergenic | 35.0% | |
| ACAAGTTATTGTACCAATCC+AGG | + | chr3.1:84308059-84308078 | None:intergenic | 35.0% | |
| ACTAGAAAAATACCTGGAGA+TGG | + | chr3.1:84306429-84306448 | None:intergenic | 35.0% | |
| AGATTACCAATTATCCCACT+AGG | + | chr3.1:84306668-84306687 | None:intergenic | 35.0% | |
| ATATGCGATAATTACTCCGA+CGG | - | chr3.1:84308266-84308285 | MS.gene32684:CDS | 35.0% | |
| ATCCACAAGTAACATTTGAG+TGG | + | chr3.1:84307393-84307412 | None:intergenic | 35.0% | |
| ATTCTGATTAACGGGAGTTA+TGG | + | chr3.1:84306804-84306823 | None:intergenic | 35.0% | |
| CAAATAAATTCCCGGATCAA+CGG | - | chr3.1:84306933-84306952 | MS.gene32684:intron | 35.0% | |
| CTAAAGGACATCGAAAGTTA+CGG | + | chr3.1:84308000-84308019 | None:intergenic | 35.0% | |
| GTTGATCCGGGAATTTATTT+GGG | + | chr3.1:84306934-84306953 | None:intergenic | 35.0% | |
| TAAAGTATGCAATGCTCGTT+TGG | - | chr3.1:84308128-84308147 | MS.gene32684:CDS | 35.0% | |
| TTCCCATAAATGCTTCTGTA+TGG | - | chr3.1:84307677-84307696 | MS.gene32684:CDS | 35.0% | |
| ! | AACGGTAATTTGCCATTTCA+AGG | - | chr3.1:84307337-84307356 | MS.gene32684:CDS | 35.0% |
| ! | CAATCTTATTTGAGAATGGG+TGG | - | chr3.1:84306602-84306621 | MS.gene32684:intron | 35.0% |
| ! | GGAGCAAAATATTTAGGACA+AGG | + | chr3.1:84308176-84308195 | None:intergenic | 35.0% |
| ! | GTAATTTGCCATTTCAAGGA+TGG | - | chr3.1:84307341-84307360 | MS.gene32684:CDS | 35.0% |
| ! | TACCACTCAAATGTTACTTG+TGG | - | chr3.1:84307388-84307407 | MS.gene32684:CDS | 35.0% |
| ! | TTTTCACCTAGTGGGATAAT+TGG | - | chr3.1:84306659-84306678 | MS.gene32684:intron | 35.0% |
| !! | AACACTCCAACTAGTCTTAA+CGG | - | chr3.1:84306689-84306708 | MS.gene32684:intron | 35.0% |
| !! | AAGCCATACAGAAGCATTTA+TGG | + | chr3.1:84307683-84307702 | None:intergenic | 35.0% |
| !! | AGCCATACAGAAGCATTTAT+GGG | + | chr3.1:84307682-84307701 | None:intergenic | 35.0% |
| !! | GTCCTTTAGAACATTCACAT+AGG | - | chr3.1:84308011-84308030 | MS.gene32684:CDS | 35.0% |
| AAACCAACAAGCTAGTATGG+TGG | - | chr3.1:84306559-84306578 | MS.gene32684:intron | 40.0% | |
| AAATATCACAAGGGAGAACG+TGG | - | chr3.1:84306399-84306418 | MS.gene32684:CDS | 40.0% | |
| AACTCTCTTGCTCCAGTTAA+CGG | - | chr3.1:84307418-84307437 | MS.gene32684:CDS | 40.0% | |
| AGTCTCGGTATCTCAAACAA+TGG | - | chr3.1:84306989-84307008 | MS.gene32684:intron | 40.0% | |
| ATACCATGTTCATGACATGC+AGG | - | chr3.1:84308208-84308227 | MS.gene32684:intron | 40.0% | |
| ATACTTGGCGAGTTCAATGA+TGG | - | chr3.1:84307618-84307637 | MS.gene32684:CDS | 40.0% | |
| ATCCGGGAATTTATTTGGGA+TGG | + | chr3.1:84306930-84306949 | None:intergenic | 40.0% | |
| CCAGCATGCTTCATTTGTAT+GGG | + | chr3.1:84307505-84307524 | None:intergenic | 40.0% | |
| CGAAAGTTACGGTGGTTAAT+TGG | + | chr3.1:84307989-84308008 | None:intergenic | 40.0% | |
| CGTTGATCCGGGAATTTATT+TGG | + | chr3.1:84306935-84306954 | None:intergenic | 40.0% | |
| CTAATCAGTATGTGTGGTCA+AGG | + | chr3.1:84307768-84307787 | None:intergenic | 40.0% | |
| CTCAAACAATGGCTTGATGT+CGG | - | chr3.1:84307000-84307019 | MS.gene32684:intron | 40.0% | |
| GATCACTTGCAAAACAGCAA+GGG | - | chr3.1:84306857-84306876 | MS.gene32684:intron | 40.0% | |
| GGTAAGTAGCATCCTGATTA+CGG | + | chr3.1:84307372-84307391 | None:intergenic | 40.0% | |
| TACTTGGCGAGTTCAATGAT+GGG | - | chr3.1:84307619-84307638 | MS.gene32684:CDS | 40.0% | |
| TATGCGATAATTACTCCGAC+GGG | - | chr3.1:84308267-84308286 | MS.gene32684:CDS | 40.0% | |
| TATTTGAGAATGGGTGGTTC+TGG | - | chr3.1:84306608-84306627 | MS.gene32684:intron | 40.0% | |
| TCCAGCATGCTTCATTTGTA+TGG | + | chr3.1:84307506-84307525 | None:intergenic | 40.0% | |
| TCCCATCCCAAATAAATTCC+CGG | - | chr3.1:84306925-84306944 | MS.gene32684:intron | 40.0% | |
| TCTTGGTTCACTGGAATACT+TGG | - | chr3.1:84307603-84307622 | MS.gene32684:CDS | 40.0% | |
| TCTTTCTCTATGCTGGATCA+AGG | - | chr3.1:84307109-84307128 | MS.gene32684:CDS | 40.0% | |
| TGAGCTGCATTCAGTTAACT+CGG | + | chr3.1:84307533-84307552 | None:intergenic | 40.0% | |
| TGATCAAACCCTATGGACAT+TGG | + | chr3.1:84306842-84306861 | None:intergenic | 40.0% | |
| TGATCACTTGCAAAACAGCA+AGG | - | chr3.1:84306856-84306875 | MS.gene32684:intron | 40.0% | |
| TGCAAACCAACAAGCTAGTA+TGG | - | chr3.1:84306556-84306575 | MS.gene32684:intron | 40.0% | |
| TGTTCCTCCTTCAGATAACA+TGG | - | chr3.1:84307222-84307241 | MS.gene32684:CDS | 40.0% | |
| TTGCAAGTGATCAAACCCTA+TGG | + | chr3.1:84306849-84306868 | None:intergenic | 40.0% | |
| ! | AAACACGGAGGTATAGGAAT+AGG | - | chr3.1:84307040-84307059 | MS.gene32684:intron | 40.0% |
| ! | ATACCTCCGTGTTTTCTTTC+AGG | + | chr3.1:84307034-84307053 | None:intergenic | 40.0% |
| ! | GAAAGAAAACACGGAGGTAT+AGG | - | chr3.1:84307034-84307053 | MS.gene32684:intron | 40.0% |
| ! | GGAGGTATAGGAATAGGATA+TGG | - | chr3.1:84307046-84307065 | MS.gene32684:intron | 40.0% |
| ! | TACCTCCGTGTTTTCTTTCA+GGG | + | chr3.1:84307033-84307052 | None:intergenic | 40.0% |
| ! | TCAGATCCTTTTCACCTAGT+GGG | - | chr3.1:84306651-84306670 | MS.gene32684:intron | 40.0% |
| ! | TCCGGGAATTTATTTGGGAT+GGG | + | chr3.1:84306929-84306948 | None:intergenic | 40.0% |
| ! | TGTTTGAGATACCGAGACTT+GGG | + | chr3.1:84306988-84307007 | None:intergenic | 40.0% |
| ! | TTCAGATCCTTTTCACCTAG+TGG | - | chr3.1:84306650-84306669 | MS.gene32684:intron | 40.0% |
| ! | TTGTTTGAGATACCGAGACT+TGG | + | chr3.1:84306989-84307008 | None:intergenic | 40.0% |
| !! | ACACTCCAACTAGTCTTAAC+GGG | - | chr3.1:84306690-84306709 | MS.gene32684:intron | 40.0% |
| !! | TGCTGGCTTATGATATTAGC+TGG | + | chr3.1:84307568-84307587 | None:intergenic | 40.0% |
| AAGACATACTCCAGTCAGCA+TGG | - | chr3.1:84307817-84307836 | MS.gene32684:CDS | 45.0% | |
| AAGGACATCGAAAGTTACGG+TGG | + | chr3.1:84307997-84308016 | None:intergenic | 45.0% | |
| AAGGTAGGCACGGTGATAAT+TGG | - | chr3.1:84307128-84307147 | MS.gene32684:CDS | 45.0% | |
| ACGCACCCTGAAAGAAAACA+CGG | - | chr3.1:84307025-84307044 | MS.gene32684:intron | 45.0% | |
| AGATTGATCTGCACTCCCTA+AGG | + | chr3.1:84306588-84306607 | None:intergenic | 45.0% | |
| AGGGAATGCCAATGTCCATA+GGG | - | chr3.1:84306831-84306850 | MS.gene32684:intron | 45.0% | |
| ATGCGATAATTACTCCGACG+GGG | - | chr3.1:84308268-84308287 | MS.gene32684:CDS | 45.0% | |
| CCCATACAAATGAAGCATGC+TGG | - | chr3.1:84307502-84307521 | MS.gene32684:CDS | 45.0% | |
| GAACTAGAGGTGGCAAAACT+TGG | + | chr3.1:84306959-84306978 | None:intergenic | 45.0% | |
| GAAGCCATGTTATCTGAAGG+AGG | + | chr3.1:84307229-84307248 | None:intergenic | 45.0% | |
| TCTCTATGCTGGATCAAGGT+AGG | - | chr3.1:84307113-84307132 | MS.gene32684:CDS | 45.0% | |
| ! | ATTCCTTGGGAGTGCATATC+TGG | + | chr3.1:84307289-84307308 | None:intergenic | 45.0% |
| ! | GTTTGAGATACCGAGACTTG+GGG | + | chr3.1:84306987-84307006 | None:intergenic | 45.0% |
| ! | TTTGAGATACCGAGACTTGG+GGG | + | chr3.1:84306986-84307005 | None:intergenic | 45.0% |
| ACTTGGGGGATGAGAACTAG+AGG | + | chr3.1:84306972-84306991 | None:intergenic | 50.0% | |
| AGGATGGGAAGACCGTAATC+AGG | - | chr3.1:84307357-84307376 | MS.gene32684:CDS | 50.0% | |
| AGGTGGAGCTAGTTGTTGTC+TGG | + | chr3.1:84307462-84307481 | None:intergenic | 50.0% | |
| AGTTCTCATCCCCCAAGTCT+CGG | - | chr3.1:84306974-84306993 | MS.gene32684:intron | 50.0% | |
| ATATCTGGCAACGAACCACC+AGG | + | chr3.1:84307274-84307293 | None:intergenic | 50.0% | |
| ATGCTGGATCAAGGTAGGCA+CGG | - | chr3.1:84307118-84307137 | MS.gene32684:CDS | 50.0% | |
| CAAAACTTGGCCGTTGATCC+GGG | + | chr3.1:84306946-84306965 | None:intergenic | 50.0% | |
| CACCCTGAAAGAAAACACGG+AGG | - | chr3.1:84307028-84307047 | MS.gene32684:intron | 50.0% | |
| CAGGGAATGCCAATGTCCAT+AGG | - | chr3.1:84306830-84306849 | MS.gene32684:intron | 50.0% | |
| CCATGCCCGTTAAGACTAGT+TGG | + | chr3.1:84306698-84306717 | None:intergenic | 50.0% | |
| CGGTCTTCCCATCCTTGAAA+TGG | + | chr3.1:84307352-84307371 | None:intergenic | 50.0% | |
| CTAGTATGGTGGCAGCCTTA+GGG | - | chr3.1:84306570-84306589 | MS.gene32684:intron | 50.0% | |
| GACAACAACTAGCTCCACCT+TGG | - | chr3.1:84307462-84307481 | MS.gene32684:CDS | 50.0% | |
| GCAAAACTTGGCCGTTGATC+CGG | + | chr3.1:84306947-84306966 | None:intergenic | 50.0% | |
| GCTCCTGCATGTCATGAACA+TGG | + | chr3.1:84308214-84308233 | None:intergenic | 50.0% | |
| GGAAAAACGGCACCGTTAAC+TGG | + | chr3.1:84307433-84307452 | None:intergenic | 50.0% | |
| TAACGGGAGTTATGGCTGAC+TGG | + | chr3.1:84306796-84306815 | None:intergenic | 50.0% | |
| TCAAGCGACGTACCGTTATC+TGG | - | chr3.1:84307151-84307170 | MS.gene32684:CDS | 50.0% | |
| TGTCTGGCCTGGTGGAAAAA+CGG | + | chr3.1:84307446-84307465 | None:intergenic | 50.0% | |
| TTGCCAGATATGCACTCCCA+AGG | - | chr3.1:84307283-84307302 | MS.gene32684:CDS | 50.0% | |
| ! | CGGGCATGGATTTTCTCCTT+CGG | - | chr3.1:84306709-84306728 | MS.gene32684:intron | 50.0% |
| ! | CTGCCACCATACTAGCTTGT+TGG | + | chr3.1:84306565-84306584 | None:intergenic | 50.0% |
| ! | GGCATGGATTTTCTCCTTCG+GGG | - | chr3.1:84306711-84306730 | MS.gene32684:intron | 50.0% |
| ! | GGGCATGGATTTTCTCCTTC+GGG | - | chr3.1:84306710-84306729 | MS.gene32684:intron | 50.0% |
| !! | CCAACTAGTCTTAACGGGCA+TGG | - | chr3.1:84306695-84306714 | MS.gene32684:intron | 50.0% |
| CCTTCGGGGCTTCTTCAGTT+GGG | - | chr3.1:84306725-84306744 | MS.gene32684:intron | 55.0% | |
| CTAGTTGTTGTCTGGCCTGG+TGG | + | chr3.1:84307454-84307473 | None:intergenic | 55.0% | |
| CTTCTTTGCCCTTGCAAGCG+GGG | - | chr3.1:84307245-84307264 | MS.gene32684:CDS | 55.0% | |
| GAGCTAGTTGTTGTCTGGCC+TGG | + | chr3.1:84307457-84307476 | None:intergenic | 55.0% | |
| GCTAGTATGGTGGCAGCCTT+AGG | - | chr3.1:84306569-84306588 | MS.gene32684:intron | 55.0% | |
| GCTTCTTTGCCCTTGCAAGC+GGG | - | chr3.1:84307244-84307263 | MS.gene32684:CDS | 55.0% | |
| GGCTTCTTTGCCCTTGCAAG+CGG | - | chr3.1:84307243-84307262 | MS.gene32684:CDS | 55.0% | |
| TCCTTCGGGGCTTCTTCAGT+TGG | - | chr3.1:84306724-84306743 | MS.gene32684:intron | 55.0% | |
| TGGGGGATGAGAACTAGAGG+TGG | + | chr3.1:84306969-84306988 | None:intergenic | 55.0% | |
| ! | GGCGAGTTCAATGATGGGAC+AGG | - | chr3.1:84307624-84307643 | MS.gene32684:CDS | 55.0% |
| !!! | AACGGTGCCGTTTTTCCACC+AGG | - | chr3.1:84307436-84307455 | MS.gene32684:CDS | 55.0% |
| ACCAGGATACCCCGCTTGCA+AGG | + | chr3.1:84307257-84307276 | None:intergenic | 60.0% | |
| CCAGGATACCCCGCTTGCAA+GGG | + | chr3.1:84307256-84307275 | None:intergenic | 60.0% | |
| CCCAACTGAAGAAGCCCCGA+AGG | + | chr3.1:84306728-84306747 | None:intergenic | 60.0% | |
| GAACGTGGCAAGCCATCTCC+AGG | - | chr3.1:84306414-84306433 | MS.gene32684:CDS | 60.0% | |
| ! | TTGCAAGCGGGGTATCCTGG+TGG | - | chr3.1:84307256-84307275 | MS.gene32684:CDS | 60.0% |
| ! | CCCTTGCAAGCGGGGTATCC+TGG | - | chr3.1:84307253-84307272 | MS.gene32684:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84306392 | 84308301 | 84306392 | ID=MS.gene32684 |
| chr3.1 | mRNA | 84306392 | 84308301 | 84306392 | ID=MS.gene32684.t1;Parent=MS.gene32684 |
| chr3.1 | exon | 84308258 | 84308301 | 84308258 | ID=MS.gene32684.t1.exon1;Parent=MS.gene32684.t1 |
| chr3.1 | CDS | 84308258 | 84308301 | 84308258 | ID=cds.MS.gene32684.t1;Parent=MS.gene32684.t1 |
| chr3.1 | exon | 84307048 | 84308149 | 84307048 | ID=MS.gene32684.t1.exon2;Parent=MS.gene32684.t1 |
| chr3.1 | CDS | 84307048 | 84308149 | 84307048 | ID=cds.MS.gene32684.t1;Parent=MS.gene32684.t1 |
| chr3.1 | exon | 84306392 | 84306463 | 84306392 | ID=MS.gene32684.t1.exon3;Parent=MS.gene32684.t1 |
| chr3.1 | CDS | 84306392 | 84306463 | 84306392 | ID=cds.MS.gene32684.t1;Parent=MS.gene32684.t1 |
| Gene Sequence |
| Protein sequence |
