Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32737.t1 | RHN70535.1 | 91.4 | 431 | 37 | 0 | 1 | 431 | 1 | 431 | 2.80E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32737.t1 | A0MFS5 | 37.0 | 362 | 207 | 6 | 17 | 367 | 56 | 407 | 3.6e-52 | 207.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32737.t1 | A0A072V1M6 | 91.4 | 431 | 37 | 0 | 1 | 431 | 1 | 431 | 2.0e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene32737 | 0.807608 | 4.65E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene32737 | 0.801071 | 1.07E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene32737 | 0.816073 | 6.67E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene32737 | 0.814982 | 1.17E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene32737 | 0.805087 | 1.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32737.t1 | MTR_3g105530 | 97.680 | 431 | 10 | 0 | 1 | 431 | 1 | 431 | 0.0 | 863 |
| MS.gene32737.t1 | MTR_0153s0070 | 89.461 | 408 | 8 | 1 | 24 | 431 | 1 | 373 | 0.0 | 723 |
| MS.gene32737.t1 | MTR_0153s0070 | 97.561 | 328 | 8 | 0 | 1 | 328 | 8 | 335 | 0.0 | 663 |
| MS.gene32737.t1 | MTR_7g117270 | 34.670 | 349 | 205 | 6 | 60 | 401 | 110 | 442 | 5.16e-51 | 180 |
| MS.gene32737.t1 | MTR_6g033595 | 31.714 | 391 | 246 | 8 | 22 | 397 | 34 | 418 | 1.22e-46 | 167 |
| MS.gene32737.t1 | MTR_1g072550 | 33.526 | 346 | 212 | 6 | 40 | 377 | 39 | 374 | 1.92e-46 | 165 |
| MS.gene32737.t1 | MTR_1g032040 | 33.430 | 344 | 211 | 6 | 42 | 377 | 41 | 374 | 3.36e-45 | 161 |
| MS.gene32737.t1 | MTR_1g032380 | 33.430 | 344 | 211 | 6 | 42 | 377 | 41 | 374 | 3.36e-45 | 161 |
| MS.gene32737.t1 | MTR_7g088530 | 34.024 | 338 | 196 | 10 | 90 | 422 | 99 | 414 | 3.46e-45 | 162 |
| MS.gene32737.t1 | MTR_8g089370 | 31.646 | 316 | 203 | 7 | 57 | 367 | 58 | 365 | 9.52e-40 | 147 |
| MS.gene32737.t1 | MTR_2g067960 | 31.728 | 353 | 220 | 8 | 60 | 397 | 37 | 383 | 1.54e-38 | 144 |
| MS.gene32737.t1 | MTR_7g107280 | 28.756 | 386 | 239 | 10 | 57 | 424 | 53 | 420 | 3.41e-37 | 140 |
| MS.gene32737.t1 | MTR_1g019170 | 30.588 | 340 | 212 | 7 | 25 | 363 | 14 | 330 | 1.44e-36 | 139 |
| MS.gene32737.t1 | MTR_3g074730 | 32.248 | 307 | 193 | 6 | 62 | 363 | 83 | 379 | 2.11e-36 | 138 |
| MS.gene32737.t1 | MTR_3g029990 | 31.471 | 340 | 209 | 8 | 25 | 363 | 14 | 330 | 8.12e-36 | 139 |
| MS.gene32737.t1 | MTR_3g029990 | 32.776 | 299 | 177 | 8 | 66 | 363 | 55 | 330 | 8.46e-36 | 139 |
| MS.gene32737.t1 | MTR_1g098960 | 32.441 | 299 | 178 | 8 | 66 | 363 | 57 | 332 | 2.70e-34 | 132 |
| MS.gene32737.t1 | MTR_3g030020 | 32.979 | 282 | 167 | 7 | 83 | 363 | 27 | 287 | 2.83e-34 | 131 |
| MS.gene32737.t1 | MTR_3g083350 | 31.193 | 327 | 188 | 8 | 61 | 367 | 81 | 390 | 1.07e-31 | 127 |
| MS.gene32737.t1 | MTR_6g043850 | 28.895 | 353 | 228 | 9 | 42 | 386 | 36 | 373 | 6.97e-31 | 125 |
| MS.gene32737.t1 | MTR_3g063230 | 27.322 | 366 | 237 | 9 | 22 | 372 | 40 | 391 | 6.02e-30 | 120 |
| MS.gene32737.t1 | MTR_7g018630 | 27.707 | 314 | 216 | 5 | 55 | 367 | 72 | 375 | 6.21e-27 | 112 |
| MS.gene32737.t1 | MTR_4g053720 | 28.116 | 345 | 213 | 7 | 30 | 357 | 18 | 344 | 8.44e-25 | 105 |
| MS.gene32737.t1 | MTR_3g063230 | 27.451 | 357 | 224 | 12 | 22 | 372 | 40 | 367 | 2.77e-23 | 101 |
| MS.gene32737.t1 | MTR_3g448960 | 28.094 | 299 | 166 | 10 | 66 | 363 | 57 | 307 | 4.99e-22 | 98.2 |
| MS.gene32737.t1 | MTR_8g102038 | 31.771 | 192 | 113 | 5 | 115 | 297 | 56 | 238 | 3.09e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32737.t1 | AT5G21970 | 66.410 | 390 | 122 | 5 | 20 | 408 | 39 | 420 | 0.0 | 519 |
| MS.gene32737.t1 | AT5G21970 | 66.410 | 390 | 122 | 5 | 20 | 408 | 39 | 420 | 0.0 | 519 |
| MS.gene32737.t1 | AT4G01037 | 36.761 | 389 | 207 | 9 | 17 | 386 | 56 | 424 | 2.37e-60 | 205 |
| MS.gene32737.t1 | AT3G63090 | 31.701 | 388 | 244 | 8 | 22 | 402 | 29 | 402 | 5.50e-49 | 172 |
| MS.gene32737.t1 | AT4G33495 | 33.509 | 379 | 224 | 11 | 25 | 388 | 38 | 403 | 1.69e-46 | 165 |
| MS.gene32737.t1 | AT5G48040 | 32.011 | 353 | 210 | 8 | 41 | 379 | 44 | 380 | 9.73e-44 | 158 |
| MS.gene32737.t1 | AT1G79120 | 31.778 | 343 | 212 | 6 | 38 | 368 | 64 | 396 | 6.72e-43 | 156 |
| MS.gene32737.t1 | AT1G79120 | 31.778 | 343 | 212 | 6 | 38 | 368 | 64 | 396 | 6.72e-43 | 156 |
| MS.gene32737.t1 | AT2G31290 | 31.006 | 358 | 218 | 7 | 37 | 387 | 29 | 364 | 1.49e-41 | 152 |
| MS.gene32737.t1 | AT2G31290 | 31.006 | 358 | 218 | 7 | 37 | 387 | 29 | 364 | 1.49e-41 | 152 |
| MS.gene32737.t1 | AT5G45790 | 31.421 | 366 | 223 | 9 | 17 | 372 | 48 | 395 | 2.43e-41 | 152 |
| MS.gene32737.t1 | AT4G08940 | 31.529 | 314 | 194 | 6 | 57 | 363 | 83 | 382 | 7.40e-41 | 150 |
| MS.gene32737.t1 | AT5G45790 | 36.082 | 291 | 162 | 7 | 90 | 372 | 36 | 310 | 9.27e-41 | 149 |
| MS.gene32737.t1 | AT5G62990 | 34.848 | 330 | 177 | 9 | 58 | 367 | 81 | 392 | 3.97e-39 | 147 |
| MS.gene32737.t1 | AT3G58520 | 32.523 | 329 | 203 | 8 | 56 | 372 | 55 | 376 | 6.64e-39 | 145 |
| MS.gene32737.t1 | AT1G06440 | 29.211 | 380 | 240 | 8 | 5 | 367 | 3 | 370 | 1.14e-36 | 138 |
| MS.gene32737.t1 | AT3G58520 | 33.793 | 290 | 175 | 7 | 95 | 372 | 80 | 364 | 5.29e-35 | 134 |
| MS.gene32737.t1 | AT1G71850 | 27.157 | 394 | 268 | 7 | 22 | 410 | 17 | 396 | 1.79e-34 | 134 |
| MS.gene32737.t1 | AT4G24320 | 28.767 | 292 | 195 | 6 | 91 | 375 | 78 | 363 | 1.23e-23 | 102 |
| MS.gene32737.t1 | AT2G39120 | 27.389 | 314 | 217 | 6 | 55 | 367 | 52 | 355 | 3.14e-22 | 98.2 |
Find 76 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTGGAATAACCATTTC+TGG | 0.211698 | 3.1:-83281711 | None:intergenic |
| AAAAGGGTGCATAGTTATTA+TGG | 0.236478 | 3.1:+83282245 | MS.gene32737:CDS |
| TCAGAGATTCTGTGAGGTTT+TGG | 0.253264 | 3.1:-83281768 | None:intergenic |
| CTTAGTCTTGTTGGCTATAG+AGG | 0.357273 | 3.1:+83282605 | MS.gene32737:CDS |
| GATTCATAGCAATCGATTCA+TGG | 0.376006 | 3.1:+83281526 | MS.gene32737:CDS |
| TTGTTTCTTGGAATTCTGAA+TGG | 0.380201 | 3.1:+83282108 | MS.gene32737:CDS |
| ACAGGAAATTTCAAAGGAAA+TGG | 0.381695 | 3.1:-83282215 | None:intergenic |
| GGATGTGGAGCTTGAGCAAC+AGG | 0.382512 | 3.1:+83282721 | MS.gene32737:CDS |
| AAAATTGCTGTTATTCGCAT+TGG | 0.392112 | 3.1:+83281553 | MS.gene32737:CDS |
| TTCACAAATTCAATGCGGTT+TGG | 0.393479 | 3.1:+83281504 | None:intergenic |
| AGCTCTATAAGGATCGTAAC+GGG | 0.395197 | 3.1:+83281820 | MS.gene32737:CDS |
| GAGAAGCTTCTTAGTCTTGT+TGG | 0.399437 | 3.1:+83282596 | MS.gene32737:CDS |
| AACAGAAGCTTATGATGGTT+CGG | 0.405777 | 3.1:+83282538 | MS.gene32737:CDS |
| AAACCCTTTGCATCAGCATA+AGG | 0.409922 | 3.1:-83282308 | None:intergenic |
| AAGATCGAAGCAAGAAGAAA+AGG | 0.422615 | 3.1:+83281607 | MS.gene32737:CDS |
| AAATTGCTGTTATTCGCATT+GGG | 0.423537 | 3.1:+83281554 | MS.gene32737:CDS |
| ACTCCCAACGGAAGTGAGTT+AGG | 0.429164 | 3.1:-83282424 | None:intergenic |
| AAGCAAACCCGGGGTGTGTT+CGG | 0.431409 | 3.1:-83282186 | None:intergenic |
| ATGTTTCTGAGAGGGGTAAG+AGG | 0.440704 | 3.1:+83282501 | MS.gene32737:CDS |
| AGGATCGTAACGGGGTGTTA+TGG | 0.444477 | 3.1:+83281829 | MS.gene32737:CDS |
| TCTCCTTATGCTGATGCAAA+GGG | 0.446830 | 3.1:+83282305 | MS.gene32737:CDS |
| TCGAAGCAGCAACAGAGAAA+TGG | 0.448143 | 3.1:+83281640 | MS.gene32737:CDS |
| GTTCTTTAGAATTCGATAAG+AGG | 0.449761 | 3.1:+83282339 | MS.gene32737:CDS |
| TGATTCTGATGTGGAGGACT+TGG | 0.465301 | 3.1:+83282700 | MS.gene32737:CDS |
| GATTCTGAGATGGATGTTAG+AGG | 0.467647 | 3.1:+83282779 | MS.gene32737:CDS |
| TCTCGAACAAGAACCAGAAA+TGG | 0.467938 | 3.1:+83281698 | MS.gene32737:CDS |
| TGTTTCTTGGAATTCTGAAT+GGG | 0.470467 | 3.1:+83282109 | MS.gene32737:CDS |
| CTTCTTCTCAATCTCTGTGA+TGG | 0.477726 | 3.1:-83282132 | None:intergenic |
| TAATGTGAAAGAGATCGAAC+TGG | 0.482436 | 3.1:-83281726 | None:intergenic |
| AGATCGAAGCAAGAAGAAAA+GGG | 0.484434 | 3.1:+83281608 | MS.gene32737:CDS |
| GTCTCCTTATGCTGATGCAA+AGG | 0.487202 | 3.1:+83282304 | MS.gene32737:CDS |
| GAATAAGACGATTGTGGAAG+GGG | 0.488073 | 3.1:+83282154 | MS.gene32737:CDS |
| GAAGAAGAATAAGACGATTG+TGG | 0.490121 | 3.1:+83282148 | MS.gene32737:CDS |
| AATGGTAGCGAAAGCAAACC+CGG | 0.509498 | 3.1:-83282197 | None:intergenic |
| AGGAAGGAAGAAGAAGTTTG+AGG | 0.519477 | 3.1:+83282625 | MS.gene32737:CDS |
| TCAGAATCGTCCTCGAGTAA+AGG | 0.523469 | 3.1:-83282764 | None:intergenic |
| AAGAATAAGACGATTGTGGA+AGG | 0.524672 | 3.1:+83282152 | MS.gene32737:CDS |
| TTCTTTAGAATTCGATAAGA+GGG | 0.527132 | 3.1:+83282340 | MS.gene32737:CDS |
| TACTAGGTTGCTTATGATGT+CGG | 0.530829 | 3.1:+83281938 | MS.gene32737:CDS |
| GGTTGATAAACGTGTTCAGT+TGG | 0.531073 | 3.1:+83281959 | MS.gene32737:CDS |
| GATGCAAAGGGTTTGAAACC+TGG | 0.532506 | 3.1:+83282317 | MS.gene32737:CDS |
| AAGCTGCTGAATATGTTACT+AGG | 0.532919 | 3.1:+83281922 | MS.gene32737:CDS |
| CAATGAGTTCTAAAATCCAT+TGG | 0.537215 | 3.1:-83282017 | None:intergenic |
| TCACCTAACTCACTTCCGTT+GGG | 0.539444 | 3.1:+83282421 | MS.gene32737:CDS |
| AGTGATGAGGAAGGCGGTGA+TGG | 0.540545 | 3.1:+83282659 | MS.gene32737:CDS |
| TTTGATGGAAGAACACAAAA+GGG | 0.543427 | 3.1:+83281878 | MS.gene32737:CDS |
| ACAGGATACCTTGGAGTACA+AGG | 0.547237 | 3.1:+83282739 | MS.gene32737:CDS |
| AACTGAAACCGAACACACCC+CGG | 0.548649 | 3.1:+83282178 | MS.gene32737:CDS |
| ATCACCTAACTCACTTCCGT+TGG | 0.553764 | 3.1:+83282420 | MS.gene32737:CDS |
| TTATCGAATTCTAAAGAACC+AGG | 0.555066 | 3.1:-83282335 | None:intergenic |
| ACTGAAACCGAACACACCCC+GGG | 0.560385 | 3.1:+83282179 | MS.gene32737:CDS |
| GTCTTGTTGGCTATAGAGGA+AGG | 0.560921 | 3.1:+83282609 | MS.gene32737:CDS |
| AAATTTACAGGAAATTTCAA+AGG | 0.561249 | 3.1:-83282221 | None:intergenic |
| GCTTGAGCAACAGGATACCT+TGG | 0.563372 | 3.1:+83282730 | MS.gene32737:CDS |
| TGATGTGGAGGACTTGGATG+TGG | 0.571180 | 3.1:+83282706 | MS.gene32737:CDS |
| ATTCTGAGATGGATGTTAGA+GGG | 0.571949 | 3.1:+83282780 | MS.gene32737:CDS |
| AACTCAACATCGTCAAGAGA+AGG | 0.575314 | 3.1:-83282077 | None:intergenic |
| TTATGTCTCAGAAGTTGATG+AGG | 0.583152 | 3.1:+83282450 | MS.gene32737:CDS |
| ACTCGAGGACGATTCTGAGA+TGG | 0.584295 | 3.1:+83282769 | MS.gene32737:CDS |
| AGAATAAGACGATTGTGGAA+GGG | 0.588082 | 3.1:+83282153 | MS.gene32737:CDS |
| GCTTCAGAGTGATTCTGATG+TGG | 0.588652 | 3.1:+83282691 | MS.gene32737:CDS |
| CGTAACGGGGTGTTATGGTG+TGG | 0.588860 | 3.1:+83281834 | MS.gene32737:CDS |
| GGCGGATAGTGATAGTGATG+AGG | 0.590246 | 3.1:+83282646 | MS.gene32737:CDS |
| GAGCTCTATAAGGATCGTAA+CGG | 0.593963 | 3.1:+83281819 | MS.gene32737:CDS |
| TAAAGGATCCTTGTACTCCA+AGG | 0.600584 | 3.1:-83282747 | None:intergenic |
| AAGGAAGAAGAAGTTTGAGG+CGG | 0.603463 | 3.1:+83282628 | MS.gene32737:CDS |
| TCAGAGTGATTCTGATGTGG+AGG | 0.607726 | 3.1:+83282694 | MS.gene32737:CDS |
| GTTATTCGCATTGGGAACGA+TGG | 0.640658 | 3.1:+83281562 | MS.gene32737:CDS |
| GAGACATAACTAACTCCCAA+CGG | 0.642056 | 3.1:-83282436 | None:intergenic |
| AGTGATAGTGATGAGGAAGG+CGG | 0.642676 | 3.1:+83282653 | MS.gene32737:CDS |
| GATAGTGATAGTGATGAGGA+AGG | 0.653348 | 3.1:+83282650 | MS.gene32737:CDS |
| ATGGTAGCGAAAGCAAACCC+GGG | 0.662877 | 3.1:-83282196 | None:intergenic |
| GTACAAGGATCCTTTACTCG+AGG | 0.671532 | 3.1:+83282754 | MS.gene32737:CDS |
| GCTCTATAAGGATCGTAACG+GGG | 0.700866 | 3.1:+83281821 | MS.gene32737:CDS |
| AGAAAATCAGAGATTCTGTG+AGG | 0.714200 | 3.1:-83281774 | None:intergenic |
| TGGTAGCGAAAGCAAACCCG+GGG | 0.722533 | 3.1:-83282195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCCTGTAAATTTTAAA+AGG | + | chr3.1:83282228-83282247 | MS.gene32737:CDS | 15.0% |
| !!! | ATTTCCTGTAAATTTTAAAA+GGG | + | chr3.1:83282229-83282248 | MS.gene32737:CDS | 15.0% |
| !! | AAATTTACAGGAAATTTCAA+AGG | - | chr3.1:83282224-83282243 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | + | chr3.1:83282268-83282287 | MS.gene32737:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | + | chr3.1:83282493-83282512 | MS.gene32737:CDS | 20.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | - | chr3.1:83281809-83281828 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | - | chr3.1:83281810-83281829 | None:intergenic | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | + | chr3.1:83282533-83282552 | MS.gene32737:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | + | chr3.1:83282019-83282038 | MS.gene32737:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | + | chr3.1:83282570-83282589 | MS.gene32737:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | + | chr3.1:83282494-83282513 | MS.gene32737:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | + | chr3.1:83282492-83282511 | MS.gene32737:CDS | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | + | chr3.1:83281809-83281828 | MS.gene32737:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | + | chr3.1:83282340-83282359 | MS.gene32737:CDS | 25.0% |
| ACAGGAAATTTCAAAGGAAA+TGG | - | chr3.1:83282218-83282237 | None:intergenic | 30.0% | |
| AGATAAAAATGTTTCAGGAG+AGG | + | chr3.1:83282273-83282292 | MS.gene32737:CDS | 30.0% | |
| ATAGAGCTCAAAAAGTTTAG+GGG | - | chr3.1:83281808-83281827 | None:intergenic | 30.0% | |
| TGTTTCTTGGAATTCTGAAT+GGG | + | chr3.1:83282109-83282128 | MS.gene32737:CDS | 30.0% | |
| TTTGATGGAAGAACACAAAA+GGG | + | chr3.1:83281878-83281897 | MS.gene32737:CDS | 30.0% | |
| ! | AAAAGGGTGCATAGTTATTA+TGG | + | chr3.1:83282245-83282264 | MS.gene32737:CDS | 30.0% |
| ! | AAAATTGCTGTTATTCGCAT+TGG | + | chr3.1:83281553-83281572 | MS.gene32737:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | + | chr3.1:83281554-83281573 | MS.gene32737:CDS | 30.0% |
| ! | TTATCGAATTCTAAAGAACC+AGG | - | chr3.1:83282338-83282357 | None:intergenic | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | + | chr3.1:83282108-83282127 | MS.gene32737:CDS | 30.0% |
| ! | TTTTGATGGAAGAACACAAA+AGG | + | chr3.1:83281877-83281896 | MS.gene32737:CDS | 30.0% |
| !! | CAATGAGTTCTAAAATCCAT+TGG | - | chr3.1:83282020-83282039 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | + | chr3.1:83282339-83282358 | MS.gene32737:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | + | chr3.1:83282573-83282592 | MS.gene32737:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | + | chr3.1:83282574-83282593 | MS.gene32737:CDS | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | + | chr3.1:83282018-83282037 | MS.gene32737:CDS | 30.0% |
| !!! | TGCACCCTTTTAAAATTTAC+AGG | - | chr3.1:83282236-83282255 | None:intergenic | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | + | chr3.1:83282387-83282406 | MS.gene32737:CDS | 30.0% |
| AACAGAAGCTTATGATGGTT+CGG | + | chr3.1:83282538-83282557 | MS.gene32737:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | + | chr3.1:83282152-83282171 | MS.gene32737:CDS | 35.0% | |
| AAGATCGAAGCAAGAAGAAA+AGG | + | chr3.1:83281607-83281626 | MS.gene32737:CDS | 35.0% | |
| AAGCTGCTGAATATGTTACT+AGG | + | chr3.1:83281922-83281941 | MS.gene32737:CDS | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | - | chr3.1:83281777-83281796 | None:intergenic | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | + | chr3.1:83282153-83282172 | MS.gene32737:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | + | chr3.1:83281608-83281627 | MS.gene32737:CDS | 35.0% | |
| GAAGAAGAATAAGACGATTG+TGG | + | chr3.1:83282148-83282167 | MS.gene32737:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | - | chr3.1:83281729-83281748 | None:intergenic | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | + | chr3.1:83281938-83281957 | MS.gene32737:CDS | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | - | chr3.1:83282581-83282600 | None:intergenic | 35.0% | |
| ! | AGGCTTTTGCTTAAACATTG+TGG | + | chr3.1:83282470-83282489 | MS.gene32737:CDS | 35.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | + | chr3.1:83281526-83281545 | MS.gene32737:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | + | chr3.1:83282082-83282101 | MS.gene32737:CDS | 35.0% |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | + | chr3.1:83282391-83282410 | MS.gene32737:CDS | 35.0% |
| !! | ATTCTGAGATGGATGTTAGA+GGG | + | chr3.1:83282780-83282799 | MS.gene32737:CDS | 35.0% |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | + | chr3.1:83281863-83281882 | MS.gene32737:CDS | 35.0% |
| !! | TTATGTCTCAGAAGTTGATG+AGG | + | chr3.1:83282450-83282469 | MS.gene32737:CDS | 35.0% |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | + | chr3.1:83282001-83282020 | MS.gene32737:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | + | chr3.1:83282096-83282115 | MS.gene32737:CDS | 35.0% |
| AAACCCTTTGCATCAGCATA+AGG | - | chr3.1:83282311-83282330 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | - | chr3.1:83282080-83282099 | None:intergenic | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | + | chr3.1:83282628-83282647 | MS.gene32737:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | + | chr3.1:83281820-83281839 | MS.gene32737:CDS | 40.0% | |
| AGGAAGGAAGAAGAAGTTTG+AGG | + | chr3.1:83282625-83282644 | MS.gene32737:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | - | chr3.1:83281714-83281733 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | - | chr3.1:83282135-83282154 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | + | chr3.1:83282154-83282173 | MS.gene32737:CDS | 40.0% | |
| GAGACATAACTAACTCCCAA+CGG | - | chr3.1:83282439-83282458 | None:intergenic | 40.0% | |
| GAGCTCTATAAGGATCGTAA+CGG | + | chr3.1:83281819-83281838 | MS.gene32737:CDS | 40.0% | |
| TAAAGGATCCTTGTACTCCA+AGG | - | chr3.1:83282750-83282769 | None:intergenic | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | + | chr3.1:83282305-83282324 | MS.gene32737:CDS | 40.0% | |
| TCTCGAACAAGAACCAGAAA+TGG | + | chr3.1:83281698-83281717 | MS.gene32737:CDS | 40.0% | |
| TTCACCACACGAAAAAGTTG+AGG | - | chr3.1:83282056-83282075 | None:intergenic | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | + | chr3.1:83282650-83282669 | MS.gene32737:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | + | chr3.1:83281990-83282009 | MS.gene32737:CDS | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | - | chr3.1:83281771-83281790 | None:intergenic | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | + | chr3.1:83282605-83282624 | MS.gene32737:CDS | 40.0% |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | + | chr3.1:83282596-83282615 | MS.gene32737:CDS | 40.0% |
| !! | GATTCTGAGATGGATGTTAG+AGG | + | chr3.1:83282779-83282798 | MS.gene32737:CDS | 40.0% |
| !! | GGTTGATAAACGTGTTCAGT+TGG | + | chr3.1:83281959-83281978 | MS.gene32737:CDS | 40.0% |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | - | chr3.1:83281767-83281786 | None:intergenic | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | + | chr3.1:83282049-83282068 | MS.gene32737:CDS | 40.0% |
| ACAGGATACCTTGGAGTACA+AGG | + | chr3.1:83282739-83282758 | MS.gene32737:CDS | 45.0% | |
| ATCACCTAACTCACTTCCGT+TGG | + | chr3.1:83282420-83282439 | MS.gene32737:CDS | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | + | chr3.1:83281821-83281840 | MS.gene32737:CDS | 45.0% | |
| GCTTCAGAGTGATTCTGATG+TGG | + | chr3.1:83282691-83282710 | MS.gene32737:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | + | chr3.1:83282754-83282773 | MS.gene32737:CDS | 45.0% | |
| GTCTCCTTATGCTGATGCAA+AGG | + | chr3.1:83282304-83282323 | MS.gene32737:CDS | 45.0% | |
| GTTATTCGCATTGGGAACGA+TGG | + | chr3.1:83281562-83281581 | MS.gene32737:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | + | chr3.1:83282421-83282440 | MS.gene32737:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | - | chr3.1:83282767-83282786 | None:intergenic | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | + | chr3.1:83282694-83282713 | MS.gene32737:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | + | chr3.1:83281640-83281659 | MS.gene32737:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | + | chr3.1:83282700-83282719 | MS.gene32737:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | - | chr3.1:83282200-83282219 | None:intergenic | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | + | chr3.1:83282653-83282672 | MS.gene32737:CDS | 45.0% |
| ! | ATGTTTCTGAGAGGGGTAAG+AGG | + | chr3.1:83282501-83282520 | MS.gene32737:CDS | 45.0% |
| ! | GATGCAAAGGGTTTGAAACC+TGG | + | chr3.1:83282317-83282336 | MS.gene32737:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | + | chr3.1:83282609-83282628 | MS.gene32737:CDS | 45.0% |
| AACTGAAACCGAACACACCC+CGG | + | chr3.1:83282178-83282197 | MS.gene32737:CDS | 50.0% | |
| ACTCCCAACGGAAGTGAGTT+AGG | - | chr3.1:83282427-83282446 | None:intergenic | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | + | chr3.1:83282730-83282749 | MS.gene32737:CDS | 50.0% | |
| TGATGTGGAGGACTTGGATG+TGG | + | chr3.1:83282706-83282725 | MS.gene32737:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | + | chr3.1:83282769-83282788 | MS.gene32737:CDS | 50.0% |
| ! | AGGATCGTAACGGGGTGTTA+TGG | + | chr3.1:83281829-83281848 | MS.gene32737:CDS | 50.0% |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | - | chr3.1:83282199-83282218 | None:intergenic | 50.0% |
| ! | GGCGGATAGTGATAGTGATG+AGG | + | chr3.1:83282646-83282665 | MS.gene32737:CDS | 50.0% |
| AAGCAAACCCGGGGTGTGTT+CGG | - | chr3.1:83282189-83282208 | None:intergenic | 55.0% | |
| ACTGAAACCGAACACACCCC+GGG | + | chr3.1:83282179-83282198 | MS.gene32737:CDS | 55.0% | |
| AGTGATGAGGAAGGCGGTGA+TGG | + | chr3.1:83282659-83282678 | MS.gene32737:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | + | chr3.1:83282721-83282740 | MS.gene32737:CDS | 55.0% | |
| ! | CGTAACGGGGTGTTATGGTG+TGG | + | chr3.1:83281834-83281853 | MS.gene32737:CDS | 55.0% |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | - | chr3.1:83282198-83282217 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 83281516 | 83282811 | 83281516 | ID=MS.gene32737 |
| chr3.1 | mRNA | 83281516 | 83282811 | 83281516 | ID=MS.gene32737.t1;Parent=MS.gene32737 |
| chr3.1 | exon | 83281516 | 83282811 | 83281516 | ID=MS.gene32737.t1.exon1;Parent=MS.gene32737.t1 |
| chr3.1 | CDS | 83281516 | 83282811 | 83281516 | ID=cds.MS.gene32737.t1;Parent=MS.gene32737.t1 |
| Gene Sequence |
| Protein sequence |
