Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32793.t1 | XP_003603604.1 | 98.3 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 2.30E-166 | 594.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32793.t1 | O81004 | 59.8 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 1.7e-80 | 300.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32793.t1 | G7J3E8 | 98.3 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 1.7e-166 | 594.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060717 | MS.gene32793 | 0.803153 | 3.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32793.t1 | MTR_3g109540 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| MS.gene32793.t1 | MTR_4g088800 | 61.966 | 234 | 86 | 2 | 66 | 298 | 64 | 295 | 4.12e-104 | 306 |
| MS.gene32793.t1 | MTR_3g466440 | 39.744 | 156 | 89 | 1 | 85 | 240 | 460 | 610 | 1.13e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32793.t1 | AT5G11480 | 66.460 | 322 | 83 | 5 | 1 | 301 | 1 | 318 | 3.34e-137 | 391 |
| MS.gene32793.t1 | AT2G22870 | 59.829 | 234 | 91 | 2 | 66 | 298 | 67 | 298 | 2.12e-103 | 304 |
| MS.gene32793.t1 | AT5G58370 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 5.45e-23 | 98.6 |
| MS.gene32793.t1 | AT5G58370 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.00e-23 | 98.6 |
| MS.gene32793.t1 | AT5G58370 | 40.580 | 138 | 81 | 1 | 103 | 240 | 274 | 410 | 6.00e-23 | 98.6 |
Find 65 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTTGATTTGCCTGGATA+TGG | 0.290721 | 3.1:+82632703 | MS.gene32793:CDS |
| GTTATTATGGGTTCTAGATT+TGG | 0.315568 | 3.1:-82632245 | None:intergenic |
| CCGGTTAAGGAAATAGTCTT+TGG | 0.322070 | 3.1:-82633566 | None:intergenic |
| CTTCCTGAGTTCGCTCTTGT+TGG | 0.347167 | 3.1:+82632455 | MS.gene32793:CDS |
| CCAAAGACTATTTCCTTAAC+CGG | 0.351830 | 3.1:+82633566 | MS.gene32793:CDS |
| TAACCGGTCAACATTGGTTT+CGG | 0.367527 | 3.1:+82633582 | MS.gene32793:CDS |
| AAACCAATGTTGACCGGTTA+AGG | 0.367559 | 3.1:-82633579 | None:intergenic |
| TTGGTGAAGATTAATGTCAT+TGG | 0.374167 | 3.1:-82634607 | None:intergenic |
| TGAGCCAGTAGTTCCGGAGC+TGG | 0.377582 | 3.1:-82634792 | None:intergenic |
| CTTGTTGGTCGTTCCAATGT+TGG | 0.388640 | 3.1:+82632470 | MS.gene32793:CDS |
| GGAAGATGAAATTGTGAAAA+GGG | 0.394291 | 3.1:-82632138 | None:intergenic |
| AGTGCTTGAGCCAGTAGTTC+CGG | 0.398592 | 3.1:-82634798 | None:intergenic |
| CTTGAGTATGCTGCTTGGTT+GGG | 0.404038 | 3.1:+82633649 | MS.gene32793:CDS |
| TGCTTGGTTGGGTGAGAATA+AGG | 0.405086 | 3.1:+82633660 | MS.gene32793:CDS |
| TTTGTTTAAGAGTGTGGTTA+AGG | 0.415649 | 3.1:-82632192 | None:intergenic |
| TGGTGAAGATTAATGTCATT+GGG | 0.416483 | 3.1:-82634606 | None:intergenic |
| AGGAAGATGAAATTGTGAAA+AGG | 0.418757 | 3.1:-82632139 | None:intergenic |
| GAAGTTGTGAGAGATGATTT+TGG | 0.420026 | 3.1:-82632218 | None:intergenic |
| TTGTTGGTCGTTCCAATGTT+GGG | 0.429746 | 3.1:+82632471 | MS.gene32793:CDS |
| TCTTGAGTATGCTGCTTGGT+TGG | 0.431152 | 3.1:+82633648 | MS.gene32793:CDS |
| TGGTACCTGGTTGATTTGCC+TGG | 0.439670 | 3.1:+82632697 | MS.gene32793:CDS |
| AGTTCCGGAGCTGGGCCATA+TGG | 0.447478 | 3.1:-82634783 | None:intergenic |
| CGCAGGAACTTAGAATGGAT+TGG | 0.455183 | 3.1:+82633533 | MS.gene32793:CDS |
| GTATCTCATCACGGCCTTGA+TGG | 0.455440 | 3.1:-82634756 | None:intergenic |
| TGGCCCAGCTCCGGAACTAC+TGG | 0.455693 | 3.1:+82634788 | MS.gene32793:CDS |
| TGAAATTGTGAAAAGGGAAA+AGG | 0.458557 | 3.1:-82632132 | None:intergenic |
| AAATCATTGACATTATCTTC+AGG | 0.464209 | 3.1:-82634670 | None:intergenic |
| GCAGGAACTTAGAATGGATT+GGG | 0.476083 | 3.1:+82633534 | MS.gene32793:CDS |
| TGGTGGTTTGTTTAAGAGTG+TGG | 0.483129 | 3.1:-82632198 | None:intergenic |
| CATTCGAAACCGTGCCTCCA+TGG | 0.490848 | 3.1:+82634713 | MS.gene32793:CDS |
| TAGGTATGCATCTGCGCCGC+AGG | 0.492153 | 3.1:+82633516 | MS.gene32793:intron |
| TCGTGAGTGACATGAGTGTT+TGG | 0.492368 | 3.1:-82632311 | None:intergenic |
| TGATGAGATACTACTCCATA+TGG | 0.496687 | 3.1:+82634768 | MS.gene32793:CDS |
| ACCATCGGAAGGACAATCTT+CGG | 0.508376 | 3.1:-82632432 | None:intergenic |
| TCTTCACCAAATGTGACAAA+AGG | 0.508839 | 3.1:+82634620 | MS.gene32793:CDS |
| TATCTCATCACGGCCTTGAT+GGG | 0.511175 | 3.1:-82634755 | None:intergenic |
| TGGTTGATTTGCCTGGATAT+GGG | 0.512221 | 3.1:+82632704 | MS.gene32793:CDS |
| TGCGCCGCAGGAACTTAGAA+TGG | 0.519575 | 3.1:+82633528 | MS.gene32793:CDS |
| TACTCCATATGGCCCAGCTC+CGG | 0.520727 | 3.1:+82634779 | MS.gene32793:CDS |
| AGGATAACCTTGGTAGATGA+AGG | 0.521781 | 3.1:-82632112 | None:intergenic |
| AAGCGATGATTTCCCAACAT+TGG | 0.526481 | 3.1:-82632483 | None:intergenic |
| AAGTTAAAGCGAGTTTCTTG+CGG | 0.528038 | 3.1:-82632523 | None:intergenic |
| ACTAGTAATGTCACCCATCA+AGG | 0.529857 | 3.1:+82634742 | MS.gene32793:CDS |
| AACCATACATACCCATATCC+AGG | 0.530783 | 3.1:-82632715 | None:intergenic |
| GACAACGCAAGAATCTTAAA+CGG | 0.544090 | 3.1:+82632332 | MS.gene32793:CDS |
| AGTTAATGATAGTTGGTACC+TGG | 0.544396 | 3.1:+82632684 | MS.gene32793:CDS |
| ATAGAGTCTGCGAGAAAATG+AGG | 0.546270 | 3.1:-82632159 | None:intergenic |
| TTTCCTTAACCGGTCAACAT+TGG | 0.555418 | 3.1:+82633576 | MS.gene32793:CDS |
| GAGCCAGTAGTTCCGGAGCT+GGG | 0.563845 | 3.1:-82634791 | None:intergenic |
| TTGATCTTGAGTATGCTGCT+TGG | 0.585806 | 3.1:+82633644 | MS.gene32793:CDS |
| ACATTACTAGTCATGATCCA+TGG | 0.586698 | 3.1:-82634730 | None:intergenic |
| AAAAGGGAAAAGGATAACCT+TGG | 0.589953 | 3.1:-82632122 | None:intergenic |
| CATATCCAGGCAAATCAACC+AGG | 0.592486 | 3.1:-82632702 | None:intergenic |
| ACCGAAGATTGTCCTTCCGA+TGG | 0.599185 | 3.1:+82632431 | MS.gene32793:CDS |
| CGACCAACAAGAGCGAACTC+AGG | 0.603551 | 3.1:-82632458 | None:intergenic |
| GCTTTAACTTCAAAGAAACC+TGG | 0.605040 | 3.1:+82632536 | MS.gene32793:CDS |
| AGACCGAAACCAATGTTGAC+CGG | 0.614690 | 3.1:-82633585 | None:intergenic |
| TGGTTGTCCTTCATCTACCA+AGG | 0.620273 | 3.1:+82632105 | MS.gene32793:CDS |
| AGCGAACTCAGGAAGACCAT+CGG | 0.623377 | 3.1:-82632447 | None:intergenic |
| CAATCCATTCTAAGTTCCTG+CGG | 0.623495 | 3.1:-82633532 | None:intergenic |
| AGTCATGATCCATGGAGGCA+CGG | 0.640377 | 3.1:-82634722 | None:intergenic |
| TGAGTGACATGAGTGTTTGG+AGG | 0.643541 | 3.1:-82632308 | None:intergenic |
| AACTCAGGAAGACCATCGGA+AGG | 0.685453 | 3.1:-82632443 | None:intergenic |
| TATGGAGTAGTATCTCATCA+CGG | 0.704699 | 3.1:-82634765 | None:intergenic |
| TTACTAGTCATGATCCATGG+AGG | 0.783256 | 3.1:-82634727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATATTATGAACCA+AGG | + | chr3.1:82634055-82634074 | MS.gene32793:intron | 15.0% |
| !! | ATTAAATTTCGCAAATTATA+AGG | - | chr3.1:82632609-82632628 | None:intergenic | 15.0% |
| !!! | TGTATATTTTTTTGTTTGTA+GGG | + | chr3.1:82632635-82632654 | MS.gene32793:intron | 15.0% |
| !!! | TTGTATATTTTTTTGTTTGT+AGG | + | chr3.1:82632634-82632653 | MS.gene32793:intron | 15.0% |
| !!! | TTGTTTTATGTTACAAATTT+GGG | + | chr3.1:82632764-82632783 | MS.gene32793:intron | 15.0% |
| !! | AAGGAAAATTAAATTATACC+AGG | - | chr3.1:82634580-82634599 | None:intergenic | 20.0% |
| !! | AATATACAAACATGTTAGTA+TGG | + | chr3.1:82632810-82632829 | MS.gene32793:intron | 20.0% |
| !! | AGGAAAATTAAATTATACCA+GGG | - | chr3.1:82634579-82634598 | None:intergenic | 20.0% |
| !! | AGGATTCCATTATTTATAAA+AGG | + | chr3.1:82632880-82632899 | MS.gene32793:intron | 20.0% |
| !! | ATACTAACATGTTTGTATAT+TGG | - | chr3.1:82632811-82632830 | None:intergenic | 20.0% |
| !! | ATATAAATTACAATCGTCAT+CGG | - | chr3.1:82633477-82633496 | None:intergenic | 20.0% |
| !! | GAAATTAACTCATAAAATGA+GGG | - | chr3.1:82633187-82633206 | None:intergenic | 20.0% |
| !! | TATGATATATGAACAGATAA+GGG | + | chr3.1:82634004-82634023 | MS.gene32793:intron | 20.0% |
| !! | TTATGATATATGAACAGATA+AGG | + | chr3.1:82634003-82634022 | MS.gene32793:intron | 20.0% |
| !! | TTCCATTATTTATAAAAGGT+TGG | + | chr3.1:82632884-82632903 | MS.gene32793:intron | 20.0% |
| !!! | ATTTTAGTCTCATATTGTTA+AGG | + | chr3.1:82633125-82633144 | MS.gene32793:intron | 20.0% |
| !!! | CTTGTTTTATGTTACAAATT+TGG | + | chr3.1:82632763-82632782 | MS.gene32793:intron | 20.0% |
| !!! | TCAAAATTAACTTTTCTTCA+AGG | - | chr3.1:82634091-82634110 | None:intergenic | 20.0% |
| !!! | TGTTTTATGTTACAAATTTG+GGG | + | chr3.1:82632765-82632784 | MS.gene32793:intron | 20.0% |
| !!! | TTATTAAAAAGTACCATTCT+CGG | - | chr3.1:82633832-82633851 | None:intergenic | 20.0% |
| !!! | TTCCAACCTTTTATAAATAA+TGG | - | chr3.1:82632889-82632908 | None:intergenic | 20.0% |
| ! | AAAAGGAAGAAGAAAAAGAA+TGG | + | chr3.1:82634637-82634656 | MS.gene32793:CDS | 25.0% |
| ! | AAATCATTGACATTATCTTC+AGG | - | chr3.1:82634673-82634692 | None:intergenic | 25.0% |
| ! | AATACATATATGCATTCCAT+TGG | - | chr3.1:82632957-82632976 | None:intergenic | 25.0% |
| ! | ACATTGTTACATTGTTTACA+GGG | - | chr3.1:82633801-82633820 | None:intergenic | 25.0% |
| ! | ACCTAATGAAAAGAACATAA+AGG | - | chr3.1:82633501-82633520 | None:intergenic | 25.0% |
| ! | ATGGAATGCATATATGTATT+TGG | + | chr3.1:82632957-82632976 | MS.gene32793:intron | 25.0% |
| ! | CGAAATTAACTCATAAAATG+AGG | - | chr3.1:82633188-82633207 | None:intergenic | 25.0% |
| ! | TAAAACAAGATTGCTTTGTA+AGG | - | chr3.1:82632752-82632771 | None:intergenic | 25.0% |
| ! | TATTTATGCCCTACAAAATT+CGG | - | chr3.1:82633053-82633072 | None:intergenic | 25.0% |
| ! | TGTAATAATAATAAGAGACC+AGG | - | chr3.1:82632557-82632576 | None:intergenic | 25.0% |
| ! | TTCTTCATTAGAAAATCTGA+TGG | + | chr3.1:82633698-82633717 | MS.gene32793:intron | 25.0% |
| !! | AGATAATGTCAATGATTTTC+AGG | + | chr3.1:82634675-82634694 | MS.gene32793:CDS | 25.0% |
| !! | GAAGTTCTTATTTAAAGTAG+AGG | - | chr3.1:82634291-82634310 | None:intergenic | 25.0% |
| !! | TTCTTATTTAAAGTAGAGGA+GGG | - | chr3.1:82634287-82634306 | None:intergenic | 25.0% |
| !! | TTGGGGTTAACAATTTATTT+TGG | + | chr3.1:82634546-82634565 | MS.gene32793:intron | 25.0% |
| !!! | ATTTTCGAGTTAATGATAGT+TGG | + | chr3.1:82632677-82632696 | MS.gene32793:CDS | 25.0% |
| ACAAATTTGGGGATTAACAT+TGG | + | chr3.1:82632776-82632795 | MS.gene32793:intron | 30.0% | |
| AGGAAGATGAAATTGTGAAA+AGG | - | chr3.1:82632142-82632161 | None:intergenic | 30.0% | |
| ATACTGTCATAGCACATATT+AGG | + | chr3.1:82633972-82633991 | MS.gene32793:intron | 30.0% | |
| CACATTGTTACATTGTTTAC+AGG | - | chr3.1:82633802-82633821 | None:intergenic | 30.0% | |
| CGTTTCTCTTCTATATAGAT+GGG | - | chr3.1:82633950-82633969 | None:intergenic | 30.0% | |
| GGAAGATGAAATTGTGAAAA+GGG | - | chr3.1:82632141-82632160 | None:intergenic | 30.0% | |
| GTAATCATACAAACTAGCAT+TGG | - | chr3.1:82633366-82633385 | None:intergenic | 30.0% | |
| GTCAACTTAAAATCAAGTGA+GGG | - | chr3.1:82633883-82633902 | None:intergenic | 30.0% | |
| GTCTAACTACTTAGTAGATT+GGG | + | chr3.1:82634528-82634547 | MS.gene32793:intron | 30.0% | |
| TAAAGGTCAGATCATAAAGA+AGG | + | chr3.1:82634242-82634261 | MS.gene32793:intron | 30.0% | |
| TAGCACTTGATATACTCTAA+AGG | + | chr3.1:82634225-82634244 | MS.gene32793:intron | 30.0% | |
| TCACATTGCCAAAAATTCTT+GGG | + | chr3.1:82632931-82632950 | MS.gene32793:intron | 30.0% | |
| TCGTTTCTCTTCTATATAGA+TGG | - | chr3.1:82633951-82633970 | None:intergenic | 30.0% | |
| TCTAACTACTTAGTAGATTG+GGG | + | chr3.1:82634529-82634548 | MS.gene32793:intron | 30.0% | |
| TCTACTAAGTAGTTAGACAT+CGG | - | chr3.1:82634526-82634545 | None:intergenic | 30.0% | |
| TGAAATTGTGAAAAGGGAAA+AGG | - | chr3.1:82632135-82632154 | None:intergenic | 30.0% | |
| TGGTGAAGATTAATGTCATT+GGG | - | chr3.1:82634609-82634628 | None:intergenic | 30.0% | |
| TGTCTAACTACTTAGTAGAT+TGG | + | chr3.1:82634527-82634546 | MS.gene32793:intron | 30.0% | |
| TTGGTGAAGATTAATGTCAT+TGG | - | chr3.1:82634610-82634629 | None:intergenic | 30.0% | |
| TTGTAGTTATGCTGAAGAAA+AGG | - | chr3.1:82633419-82633438 | None:intergenic | 30.0% | |
| ! | ATGTAGCACATATACACTTT+TGG | + | chr3.1:82634345-82634364 | MS.gene32793:intron | 30.0% |
| ! | GCCTTTATGTTCTTTTCATT+AGG | + | chr3.1:82633497-82633516 | MS.gene32793:intron | 30.0% |
| ! | GTTCTTATTTAAAGTAGAGG+AGG | - | chr3.1:82634288-82634307 | None:intergenic | 30.0% |
| ! | TATTGGAACCGAATTTTGTA+GGG | + | chr3.1:82633042-82633061 | MS.gene32793:intron | 30.0% |
| ! | TCTTATTTAAAGTAGAGGAG+GGG | - | chr3.1:82634286-82634305 | None:intergenic | 30.0% |
| ! | TTTGTTTAAGAGTGTGGTTA+AGG | - | chr3.1:82632195-82632214 | None:intergenic | 30.0% |
| !! | GAGTGAAATTCTAGTTCATA+TGG | + | chr3.1:82633209-82633228 | MS.gene32793:intron | 30.0% |
| !! | GTTATTATGGGTTCTAGATT+TGG | - | chr3.1:82632248-82632267 | None:intergenic | 30.0% |
| !! | TATGGGTATGTATGGTTTTA+AGG | + | chr3.1:82632721-82632740 | MS.gene32793:intron | 30.0% |
| !! | TCAAGATCAATCTTTTTAGC+AGG | - | chr3.1:82633634-82633653 | None:intergenic | 30.0% |
| !! | TCTGACATTTAATTTGTCTC+TGG | + | chr3.1:82633316-82633335 | MS.gene32793:intron | 30.0% |
| !! | TTTTGGTTGAAGTTGTGTTT+GGG | + | chr3.1:82634362-82634381 | MS.gene32793:intron | 30.0% |
| !!! | AAGAGTTTTTCGAGAGATAA+GGG | - | chr3.1:82632284-82632303 | None:intergenic | 30.0% |
| !!! | TTTATTTTGGTAATTGACCC+TGG | + | chr3.1:82634559-82634578 | MS.gene32793:intron | 30.0% |
| AAAAGGGAAAAGGATAACCT+TGG | - | chr3.1:82632125-82632144 | None:intergenic | 35.0% | |
| AAACCCGTTTAGCATAGTAT+TGG | + | chr3.1:82633025-82633044 | MS.gene32793:intron | 35.0% | |
| AAGTTAAAGCGAGTTTCTTG+CGG | - | chr3.1:82632526-82632545 | None:intergenic | 35.0% | |
| AATGTGATATGTACCGAGAA+TGG | + | chr3.1:82633816-82633835 | MS.gene32793:intron | 35.0% | |
| ACATTACTAGTCATGATCCA+TGG | - | chr3.1:82634733-82634752 | None:intergenic | 35.0% | |
| AGGAAGAAGAAAAAGAATGG+AGG | + | chr3.1:82634640-82634659 | MS.gene32793:CDS | 35.0% | |
| ATAGACACTGGTAGTAATTG+AGG | - | chr3.1:82634452-82634471 | None:intergenic | 35.0% | |
| CAGGGCATGTAAAGATAAAA+TGG | - | chr3.1:82633783-82633802 | None:intergenic | 35.0% | |
| CCAAAGACTATTTCCTTAAC+CGG | + | chr3.1:82633566-82633585 | MS.gene32793:CDS | 35.0% | |
| CGTCAACTTAAAATCAAGTG+AGG | - | chr3.1:82633884-82633903 | None:intergenic | 35.0% | |
| CTCACATTGCCAAAAATTCT+TGG | + | chr3.1:82632930-82632949 | MS.gene32793:intron | 35.0% | |
| CTCATATTGTTAAGGTTCCT+TGG | + | chr3.1:82633133-82633152 | MS.gene32793:intron | 35.0% | |
| GACAACGCAAGAATCTTAAA+CGG | + | chr3.1:82632332-82632351 | MS.gene32793:CDS | 35.0% | |
| GGTTCCAATACTATGCTAAA+CGG | - | chr3.1:82633032-82633051 | None:intergenic | 35.0% | |
| GTGTCAAACATCATAACAGT+AGG | + | chr3.1:82632860-82632879 | MS.gene32793:intron | 35.0% | |
| GTTCCAATACTATGCTAAAC+GGG | - | chr3.1:82633031-82633050 | None:intergenic | 35.0% | |
| TAATGTCATTGGGATCTGAA+AGG | - | chr3.1:82634599-82634618 | None:intergenic | 35.0% | |
| TATGGAGTAGTATCTCATCA+CGG | - | chr3.1:82634768-82634787 | None:intergenic | 35.0% | |
| TCTTCACCAAATGTGACAAA+AGG | + | chr3.1:82634620-82634639 | MS.gene32793:CDS | 35.0% | |
| TGATGAGATACTACTCCATA+TGG | + | chr3.1:82634768-82634787 | MS.gene32793:CDS | 35.0% | |
| ! | AACAATTGACTCATAGACAC+TGG | - | chr3.1:82634464-82634483 | None:intergenic | 35.0% |
| ! | AGTTAATGATAGTTGGTACC+TGG | + | chr3.1:82632684-82632703 | MS.gene32793:CDS | 35.0% |
| ! | CTTCTTCCTTTTGTCACATT+TGG | - | chr3.1:82634629-82634648 | None:intergenic | 35.0% |
| ! | GAAGTTGTGAGAGATGATTT+TGG | - | chr3.1:82632221-82632240 | None:intergenic | 35.0% |
| ! | GCTTTAACTTCAAAGAAACC+TGG | + | chr3.1:82632536-82632555 | MS.gene32793:CDS | 35.0% |
| ! | GTATTGGAACCGAATTTTGT+AGG | + | chr3.1:82633041-82633060 | MS.gene32793:intron | 35.0% |
| !! | AATCTTTTTAGCAGGAATGC+TGG | - | chr3.1:82633626-82633645 | None:intergenic | 35.0% |
| !! | CTTCTATATAGATGGGTTGT+AGG | - | chr3.1:82633943-82633962 | None:intergenic | 35.0% |
| !! | CTTTTGGTTGAAGTTGTGTT+TGG | + | chr3.1:82634361-82634380 | MS.gene32793:intron | 35.0% |
| !!! | GAAGAGTTTTTCGAGAGATA+AGG | - | chr3.1:82632285-82632304 | None:intergenic | 35.0% |
| !!! | TCGGTTTTAGGGGTTATTAT+GGG | - | chr3.1:82632260-82632279 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTAGGGGTTATTA+TGG | - | chr3.1:82632261-82632280 | None:intergenic | 35.0% |
| !!! | TTTTAAGTTGACGACATCTG+TGG | + | chr3.1:82633891-82633910 | MS.gene32793:intron | 35.0% |
| !!! | TTTTTCGAGAGATAAGGGTT+CGG | - | chr3.1:82632279-82632298 | None:intergenic | 35.0% |
| AAACCAATGTTGACCGGTTA+AGG | - | chr3.1:82633582-82633601 | None:intergenic | 40.0% | |
| AACCATACATACCCATATCC+AGG | - | chr3.1:82632718-82632737 | None:intergenic | 40.0% | |
| AAGAATCGATAAGAGCTGAG+CGG | + | chr3.1:82633741-82633760 | MS.gene32793:intron | 40.0% | |
| AAGAGTAGTTCATCTACACC+AGG | + | chr3.1:82634183-82634202 | MS.gene32793:intron | 40.0% | |
| AAGCGATGATTTCCCAACAT+TGG | - | chr3.1:82632486-82632505 | None:intergenic | 40.0% | |
| ACTAGTAATGTCACCCATCA+AGG | + | chr3.1:82634742-82634761 | MS.gene32793:CDS | 40.0% | |
| AGGATAACCTTGGTAGATGA+AGG | - | chr3.1:82632115-82632134 | None:intergenic | 40.0% | |
| ATAGAGTCTGCGAGAAAATG+AGG | - | chr3.1:82632162-82632181 | None:intergenic | 40.0% | |
| ATGTATACATTGCACAGCCA+AGG | - | chr3.1:82633153-82633172 | None:intergenic | 40.0% | |
| ATGTGCTACATATACTGCCT+AGG | - | chr3.1:82634336-82634355 | None:intergenic | 40.0% | |
| ATTATGAACCAAGGTAAGCG+TGG | + | chr3.1:82634064-82634083 | MS.gene32793:intron | 40.0% | |
| CAATCCATTCTAAGTTCCTG+CGG | - | chr3.1:82633535-82633554 | None:intergenic | 40.0% | |
| CATGGAAAGTGGATCACTTA+AGG | - | chr3.1:82634313-82634332 | None:intergenic | 40.0% | |
| CCGGTTAAGGAAATAGTCTT+TGG | - | chr3.1:82633569-82633588 | None:intergenic | 40.0% | |
| CGTGGCTTCTATTTAGATAG+AGG | - | chr3.1:82634126-82634145 | None:intergenic | 40.0% | |
| GGCTTTCTACAAAACTGAAC+AGG | - | chr3.1:82633456-82633475 | None:intergenic | 40.0% | |
| TAAAGAAGGAAAGCCTCTAG+CGG | + | chr3.1:82634256-82634275 | MS.gene32793:intron | 40.0% | |
| TCGATCTCACTCTCAAAAGT+TGG | - | chr3.1:82633006-82633025 | None:intergenic | 40.0% | |
| TGCGAGACAATGATATGTGT+TGG | - | chr3.1:82634391-82634410 | None:intergenic | 40.0% | |
| TTACTAGTCATGATCCATGG+AGG | - | chr3.1:82634730-82634749 | None:intergenic | 40.0% | |
| TTAGACATCGGACATAGTAG+TGG | - | chr3.1:82634514-82634533 | None:intergenic | 40.0% | |
| TTGATCTTGAGTATGCTGCT+TGG | + | chr3.1:82633644-82633663 | MS.gene32793:CDS | 40.0% | |
| TTGTTGGTCGTTCCAATGTT+GGG | + | chr3.1:82632471-82632490 | MS.gene32793:CDS | 40.0% | |
| TTTCCTTAACCGGTCAACAT+TGG | + | chr3.1:82633576-82633595 | MS.gene32793:CDS | 40.0% | |
| ! | GCAGGAACTTAGAATGGATT+GGG | + | chr3.1:82633534-82633553 | MS.gene32793:CDS | 40.0% |
| ! | GTTGTGAGAGATGATTTTGG+TGG | - | chr3.1:82632218-82632237 | None:intergenic | 40.0% |
| ! | TCCATTGGCCCAAGAATTTT+TGG | - | chr3.1:82632942-82632961 | None:intergenic | 40.0% |
| ! | TGGTTATGTTGTGACTTGTG+TGG | + | chr3.1:82633718-82633737 | MS.gene32793:intron | 40.0% |
| !! | AGAGATAAGGGTTCGGTTTT+AGG | - | chr3.1:82632272-82632291 | None:intergenic | 40.0% |
| !! | AGATAAGGGTTCGGTTTTAG+GGG | - | chr3.1:82632270-82632289 | None:intergenic | 40.0% |
| !! | GAGATAAGGGTTCGGTTTTA+GGG | - | chr3.1:82632271-82632290 | None:intergenic | 40.0% |
| !! | TAACCGGTCAACATTGGTTT+CGG | + | chr3.1:82633582-82633601 | MS.gene32793:CDS | 40.0% |
| !! | TGGTGGTTTGTTTAAGAGTG+TGG | - | chr3.1:82632201-82632220 | None:intergenic | 40.0% |
| !! | TGGTTGATTTGCCTGGATAT+GGG | + | chr3.1:82632704-82632723 | MS.gene32793:CDS | 40.0% |
| !!! | GATTTTCAGGAGTTGATACG+TGG | + | chr3.1:82634688-82634707 | MS.gene32793:CDS | 40.0% |
| ACCATCGGAAGGACAATCTT+CGG | - | chr3.1:82632435-82632454 | None:intergenic | 45.0% | |
| AGACCGAAACCAATGTTGAC+CGG | - | chr3.1:82633588-82633607 | None:intergenic | 45.0% | |
| AGTTGACGACATCTGTGGAT+CGG | + | chr3.1:82633896-82633915 | MS.gene32793:intron | 45.0% | |
| CAATACAGCATGAGTGACAC+AGG | - | chr3.1:82634161-82634180 | None:intergenic | 45.0% | |
| CACAGGTTTGATGTTAGACG+TGG | - | chr3.1:82634144-82634163 | None:intergenic | 45.0% | |
| CATATCCAGGCAAATCAACC+AGG | - | chr3.1:82632705-82632724 | None:intergenic | 45.0% | |
| CGCAGGAACTTAGAATGGAT+TGG | + | chr3.1:82633533-82633552 | MS.gene32793:CDS | 45.0% | |
| CTACATATACTGCCTAGGCA+TGG | - | chr3.1:82634331-82634350 | None:intergenic | 45.0% | |
| CTTGTTGGTCGTTCCAATGT+TGG | + | chr3.1:82632470-82632489 | MS.gene32793:CDS | 45.0% | |
| GCCAAAAATTCTTGGGCCAA+TGG | + | chr3.1:82632938-82632957 | MS.gene32793:intron | 45.0% | |
| GTAGTTCATCTACACCAGGT+TGG | + | chr3.1:82634187-82634206 | MS.gene32793:intron | 45.0% | |
| TATCTCATCACGGCCTTGAT+GGG | - | chr3.1:82634758-82634777 | None:intergenic | 45.0% | |
| TCGTGAGTGACATGAGTGTT+TGG | - | chr3.1:82632314-82632333 | None:intergenic | 45.0% | |
| TGAGTGACATGAGTGTTTGG+AGG | - | chr3.1:82632311-82632330 | None:intergenic | 45.0% | |
| TGCCTGGATATGGGTATGTA+TGG | + | chr3.1:82632713-82632732 | MS.gene32793:intron | 45.0% | |
| TGCTTGGTTGGGTGAGAATA+AGG | + | chr3.1:82633660-82633679 | MS.gene32793:CDS | 45.0% | |
| TGGTTGTCCTTCATCTACCA+AGG | + | chr3.1:82632105-82632124 | MS.gene32793:CDS | 45.0% | |
| ! | CTTGAGTATGCTGCTTGGTT+GGG | + | chr3.1:82633649-82633668 | MS.gene32793:CDS | 45.0% |
| ! | TCTTGAGTATGCTGCTTGGT+TGG | + | chr3.1:82633648-82633667 | MS.gene32793:CDS | 45.0% |
| !! | CTGGTTGATTTGCCTGGATA+TGG | + | chr3.1:82632703-82632722 | MS.gene32793:CDS | 45.0% |
| !!! | AATAATTTTTAATATAGTTA+TGG | + | chr3.1:82633847-82633866 | MS.gene32793:intron | 5.0% |
| AACTCAGGAAGACCATCGGA+AGG | - | chr3.1:82632446-82632465 | None:intergenic | 50.0% | |
| ACCGAAGATTGTCCTTCCGA+TGG | + | chr3.1:82632431-82632450 | MS.gene32793:CDS | 50.0% | |
| AGCGAACTCAGGAAGACCAT+CGG | - | chr3.1:82632450-82632469 | None:intergenic | 50.0% | |
| AGTCATGATCCATGGAGGCA+CGG | - | chr3.1:82634725-82634744 | None:intergenic | 50.0% | |
| AGTGCTTGAGCCAGTAGTTC+CGG | - | chr3.1:82634801-82634820 | None:intergenic | 50.0% | |
| CTTCCTGAGTTCGCTCTTGT+TGG | + | chr3.1:82632455-82632474 | MS.gene32793:CDS | 50.0% | |
| GGCTTCTAGATGAGCAAAGC+CGG | - | chr3.1:82633922-82633941 | None:intergenic | 50.0% | |
| GTATCTCATCACGGCCTTGA+TGG | - | chr3.1:82634759-82634778 | None:intergenic | 50.0% | |
| GTGATCCACTTTCCATGCCT+AGG | + | chr3.1:82634316-82634335 | MS.gene32793:intron | 50.0% | |
| TACTGCCTAGGCATGGAAAG+TGG | - | chr3.1:82634324-82634343 | None:intergenic | 50.0% | |
| TGCAGCTTGATTGTCCAACC+TGG | - | chr3.1:82634204-82634223 | None:intergenic | 50.0% | |
| TTCAAGGTCCACGCTTACCT+TGG | - | chr3.1:82634075-82634094 | None:intergenic | 50.0% | |
| !! | TGGTACCTGGTTGATTTGCC+TGG | + | chr3.1:82632697-82632716 | MS.gene32793:CDS | 50.0% |
| CATTCGAAACCGTGCCTCCA+TGG | + | chr3.1:82634713-82634732 | MS.gene32793:CDS | 55.0% | |
| CGACCAACAAGAGCGAACTC+AGG | - | chr3.1:82632461-82632480 | None:intergenic | 55.0% | |
| TACTCCATATGGCCCAGCTC+CGG | + | chr3.1:82634779-82634798 | MS.gene32793:CDS | 55.0% | |
| TCAATACCCATGCTCGCGTG+TGG | - | chr3.1:82633099-82633118 | None:intergenic | 55.0% | |
| TGCGCCGCAGGAACTTAGAA+TGG | + | chr3.1:82633528-82633547 | MS.gene32793:CDS | 55.0% | |
| AGTTCCGGAGCTGGGCCATA+TGG | - | chr3.1:82634786-82634805 | None:intergenic | 60.0% | |
| CTCGCGTGTGGTGTGGGTTT+AGG | - | chr3.1:82633087-82633106 | None:intergenic | 60.0% | |
| GACGACATCTGTGGATCGGC+CGG | + | chr3.1:82633900-82633919 | MS.gene32793:intron | 60.0% | |
| GAGCCAGTAGTTCCGGAGCT+GGG | - | chr3.1:82634794-82634813 | None:intergenic | 60.0% | |
| GAGGAGGGGTAAACCGCTAG+AGG | - | chr3.1:82634272-82634291 | None:intergenic | 60.0% | |
| TAGGTATGCATCTGCGCCGC+AGG | + | chr3.1:82633516-82633535 | MS.gene32793:intron | 60.0% | |
| TGAGCCAGTAGTTCCGGAGC+TGG | - | chr3.1:82634795-82634814 | None:intergenic | 60.0% | |
| ACCCACACCACACGCGAGCA+TGG | + | chr3.1:82633089-82633108 | MS.gene32793:intron | 65.0% | |
| ACCCATGCTCGCGTGTGGTG+TGG | - | chr3.1:82633094-82633113 | None:intergenic | 65.0% | |
| CCCACACCACACGCGAGCAT+GGG | + | chr3.1:82633090-82633109 | MS.gene32793:intron | 65.0% | |
| CCCATGCTCGCGTGTGGTGT+GGG | - | chr3.1:82633093-82633112 | None:intergenic | 65.0% | |
| TGGCCCAGCTCCGGAACTAC+TGG | + | chr3.1:82634788-82634807 | MS.gene32793:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82632104 | 82634822 | 82632104 | ID=MS.gene32793 |
| chr3.1 | mRNA | 82632104 | 82634822 | 82632104 | ID=MS.gene32793.t1;Parent=MS.gene32793 |
| chr3.1 | exon | 82632104 | 82632557 | 82632104 | ID=MS.gene32793.t1.exon1;Parent=MS.gene32793.t1 |
| chr3.1 | CDS | 82632104 | 82632557 | 82632104 | ID=cds.MS.gene32793.t1;Parent=MS.gene32793.t1 |
| chr3.1 | exon | 82632656 | 82632725 | 82632656 | ID=MS.gene32793.t1.exon2;Parent=MS.gene32793.t1 |
| chr3.1 | CDS | 82632656 | 82632725 | 82632656 | ID=cds.MS.gene32793.t1;Parent=MS.gene32793.t1 |
| chr3.1 | exon | 82633519 | 82633681 | 82633519 | ID=MS.gene32793.t1.exon3;Parent=MS.gene32793.t1 |
| chr3.1 | CDS | 82633519 | 82633681 | 82633519 | ID=cds.MS.gene32793.t1;Parent=MS.gene32793.t1 |
| chr3.1 | exon | 82634604 | 82634822 | 82634604 | ID=MS.gene32793.t1.exon4;Parent=MS.gene32793.t1 |
| chr3.1 | CDS | 82634604 | 82634822 | 82634604 | ID=cds.MS.gene32793.t1;Parent=MS.gene32793.t1 |
| Gene Sequence |
| Protein sequence |
