Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32880.t1 | XP_013461781.1 | 97.7 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 6.10E-240 | 839.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32880.t1 | Q5S1U6 | 26.0 | 393 | 238 | 10 | 16 | 386 | 41 | 402 | 2.3e-22 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32880.t1 | A0A072V2D3 | 97.7 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 4.4e-240 | 839.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055505 | MS.gene32880 | 0.839102 | 1.94E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32880.t1 | MTR_3g103090 | 97.743 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 0.0 | 895 |
| MS.gene32880.t1 | MTR_3g103090 | 97.519 | 403 | 10 | 0 | 1 | 403 | 1 | 403 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32880.t1 | AT1G27760 | 57.812 | 448 | 175 | 5 | 1 | 442 | 1 | 440 | 0.0 | 512 |
| MS.gene32880.t1 | AT1G27760 | 57.366 | 448 | 173 | 6 | 1 | 442 | 1 | 436 | 5.46e-177 | 502 |
| MS.gene32880.t1 | AT1G27760 | 58.095 | 420 | 158 | 6 | 29 | 442 | 18 | 425 | 3.60e-175 | 497 |
Find 71 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATTGGAACCTAATT+TGG | 0.073567 | 3.1:-81567262 | None:intergenic |
| CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 3.1:-81568817 | None:intergenic |
| GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 3.1:-81569357 | None:intergenic |
| CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 3.1:-81568625 | None:intergenic |
| ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 3.1:+81568546 | MS.gene32880:CDS |
| ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 3.1:-81566358 | None:intergenic |
| ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 3.1:-81569386 | None:intergenic |
| TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 3.1:+81566946 | MS.gene32880:intron |
| CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 3.1:+81569626 | MS.gene32880:CDS |
| ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 3.1:-81568382 | None:intergenic |
| TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 3.1:+81567009 | MS.gene32880:CDS |
| GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 3.1:+81568650 | MS.gene32880:CDS |
| CATACATTGGAACCTAATTT+GGG | 0.377504 | 3.1:-81567261 | None:intergenic |
| AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 3.1:+81568993 | MS.gene32880:CDS |
| AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 3.1:-81566349 | None:intergenic |
| CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 3.1:+81567249 | MS.gene32880:CDS |
| GCAGTTATTAATTGAGAAGA+AGG | 0.402021 | 3.1:-81567435 | None:intergenic |
| ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 3.1:+81568999 | MS.gene32880:CDS |
| AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 3.1:-81566842 | None:intergenic |
| CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 3.1:+81568817 | MS.gene32880:CDS |
| CATCCATATTGACTGAATAA+TGG | 0.431054 | 3.1:-81569629 | None:intergenic |
| AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 3.1:-81568653 | None:intergenic |
| TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 3.1:+81568597 | MS.gene32880:CDS |
| AGTTCAATAGCCTATTTATC+CGG | 0.449992 | 3.1:+81568372 | MS.gene32880:intron |
| TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 3.1:+81567161 | MS.gene32880:intron |
| AATGGCGAACATAGAATGTC+TGG | 0.477792 | 3.1:+81569207 | MS.gene32880:CDS |
| TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 3.1:+81566142 | MS.gene32880:CDS |
| TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 3.1:+81568996 | MS.gene32880:CDS |
| CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 3.1:-81569379 | None:intergenic |
| TAGCAAGAGATTCATCCAAA+GGG | 0.495141 | 3.1:-81567024 | None:intergenic |
| ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 3.1:-81568487 | None:intergenic |
| GGGGTTCATTAAACATATGC+AGG | 0.506623 | 3.1:+81569019 | MS.gene32880:CDS |
| AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 3.1:-81569161 | None:intergenic |
| GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 3.1:+81566959 | MS.gene32880:intron |
| GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 3.1:+81568861 | MS.gene32880:CDS |
| TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 3.1:+81568997 | MS.gene32880:CDS |
| AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 3.1:+81567215 | MS.gene32880:CDS |
| GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 3.1:-81568391 | None:intergenic |
| AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 3.1:+81568425 | MS.gene32880:CDS |
| AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 3.1:+81569606 | MS.gene32880:intron |
| TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 3.1:+81569218 | MS.gene32880:CDS |
| CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 3.1:+81568998 | MS.gene32880:CDS |
| AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 3.1:+81568591 | MS.gene32880:CDS |
| TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 3.1:+81567502 | MS.gene32880:CDS |
| GAAAGTTACATATTCTTACA+AGG | 0.545343 | 3.1:+81568537 | MS.gene32880:CDS |
| TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 3.1:+81569000 | MS.gene32880:CDS |
| ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 3.1:+81566853 | MS.gene32880:CDS |
| CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 3.1:-81567257 | None:intergenic |
| GACACATTCATGAGATCAGA+TGG | 0.557531 | 3.1:-81566139 | None:intergenic |
| CTAGCAAGAGATTCATCCAA+AGG | 0.563507 | 3.1:-81567025 | None:intergenic |
| TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 3.1:+81567451 | MS.gene32880:CDS |
| TTCTCAATTAATAACTGCTG+TGG | 0.572766 | 3.1:+81567440 | MS.gene32880:CDS |
| GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 3.1:+81568394 | MS.gene32880:CDS |
| TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 3.1:+81567508 | MS.gene32880:CDS |
| GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 3.1:+81568820 | MS.gene32880:CDS |
| AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 3.1:-81568531 | None:intergenic |
| TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 3.1:+81569398 | MS.gene32880:CDS |
| TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 3.1:-81567482 | None:intergenic |
| AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 3.1:+81568628 | MS.gene32880:CDS |
| ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 3.1:-81567490 | None:intergenic |
| ATCGCTACATCCAACTGTCA+AGG | 0.612115 | 3.1:-81566969 | None:intergenic |
| AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 3.1:+81568414 | MS.gene32880:CDS |
| AGCGATCAATGGACATAATG+TGG | 0.622561 | 3.1:+81567226 | MS.gene32880:CDS |
| TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 3.1:+81568515 | MS.gene32880:CDS |
| TTTATTTAAGGGGCACCACG+AGG | 0.637987 | 3.1:+81566319 | MS.gene32880:intron |
| CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 3.1:+81569385 | MS.gene32880:CDS |
| CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 3.1:-81569385 | None:intergenic |
| TTATTTAAGGGGCACCACGA+GGG | 0.671059 | 3.1:+81566320 | MS.gene32880:intron |
| AGCAAGAGATTCATCCAAAG+GGG | 0.679651 | 3.1:-81567023 | None:intergenic |
| ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 3.1:+81568845 | MS.gene32880:CDS |
| GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 3.1:+81569210 | MS.gene32880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAACTTGATTATTTTTT+AGG | + | chr3.1:81566435-81566454 | MS.gene32880:intron | 10.0% |
| !! | ACATACATTATATATGAAAA+AGG | - | chr3.1:81566900-81566919 | None:intergenic | 15.0% |
| !! | ACTAAATTATTAGGAAAAAA+AGG | + | chr3.1:81568112-81568131 | MS.gene32880:intron | 15.0% |
| !! | CTAAATTATTAGGAAAAAAA+GGG | + | chr3.1:81568113-81568132 | MS.gene32880:intron | 15.0% |
| !! | TATAACATCAAAAACATAAA+AGG | - | chr3.1:81567116-81567135 | None:intergenic | 15.0% |
| !! | TCAAATAATAGTAACAATAA+GGG | - | chr3.1:81568716-81568735 | None:intergenic | 15.0% |
| !!! | CAAAATAAGTTGAAAAATAT+CGG | - | chr3.1:81568013-81568032 | None:intergenic | 15.0% |
| !!! | CAACTTATTTTGATAATTTA+AGG | + | chr3.1:81568021-81568040 | MS.gene32880:intron | 15.0% |
| !!! | TAAATATTGATGATTATTGA+AGG | + | chr3.1:81566266-81566285 | MS.gene32880:intron | 15.0% |
| !!! | TATTTTTTAGGTTTTTGTTT+TGG | + | chr3.1:81566447-81566466 | MS.gene32880:intron | 15.0% |
| !!! | TTTGCTTATATTTAAGATTT+AGG | - | chr3.1:81568139-81568158 | None:intergenic | 15.0% |
| !! | ACATAATTTCACACTTATTA+AGG | - | chr3.1:81568198-81568217 | None:intergenic | 20.0% |
| !! | ATATTCTTACAAGGATTAAA+AGG | + | chr3.1:81568546-81568565 | MS.gene32880:CDS | 20.0% |
| !! | CTCAAATAATAGTAACAATA+AGG | - | chr3.1:81568717-81568736 | None:intergenic | 20.0% |
| !! | TAAATAAATGAAAGAAAGCA+AGG | - | chr3.1:81568891-81568910 | None:intergenic | 20.0% |
| !! | TTCCTGTTGAATTTATTTAA+GGG | + | chr3.1:81566308-81566327 | MS.gene32880:intron | 20.0% |
| !! | TTTCCTGTTGAATTTATTTA+AGG | + | chr3.1:81566307-81566326 | MS.gene32880:intron | 20.0% |
| !!! | AAGAAAAAGTATCTAAACAA+TGG | + | chr3.1:81569189-81569208 | MS.gene32880:CDS | 20.0% |
| !!! | ACTTTTTAAAAATGAAAGCA+TGG | - | chr3.1:81567737-81567756 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGATACTTTTTCT+TGG | - | chr3.1:81569190-81569209 | None:intergenic | 20.0% |
| !!! | CATTCTTACTATATTTTGTT+AGG | + | chr3.1:81569425-81569444 | MS.gene32880:intron | 20.0% |
| !!! | TGTATTTTTACTTATAGTAG+AGG | + | chr3.1:81568215-81568234 | MS.gene32880:intron | 20.0% |
| !!! | TTGTTTAGATACTTTTTCTT+GGG | - | chr3.1:81569189-81569208 | None:intergenic | 20.0% |
| !!! | TTTAGTCAAAATTTTACCAA+TGG | - | chr3.1:81566872-81566891 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAATAATTTAGTC+CGG | - | chr3.1:81568111-81568130 | None:intergenic | 20.0% |
| ! | AAAAACATAAAAGGAGAACA+GGG | - | chr3.1:81567107-81567126 | None:intergenic | 25.0% |
| ! | AAAACAAATAAATCACAGCA+TGG | - | chr3.1:81566754-81566773 | None:intergenic | 25.0% |
| ! | AATAAAAAAGGGATCAAAGA+AGG | + | chr3.1:81566813-81566832 | MS.gene32880:CDS | 25.0% |
| ! | AATTTCACACTTATTAAGGA+TGG | - | chr3.1:81568194-81568213 | None:intergenic | 25.0% |
| ! | AGCAACAACAAAATATAAGT+GGG | - | chr3.1:81567979-81567998 | None:intergenic | 25.0% |
| ! | AGGAATACAAATCTATATGT+AGG | - | chr3.1:81568299-81568318 | None:intergenic | 25.0% |
| ! | ATTAAATTTCATTCCATTGC+AGG | + | chr3.1:81566938-81566957 | MS.gene32880:intron | 25.0% |
| ! | GAAAGTTACATATTCTTACA+AGG | + | chr3.1:81568537-81568556 | MS.gene32880:CDS | 25.0% |
| ! | GGAAAATAAAATCAATAAGC+TGG | - | chr3.1:81568348-81568367 | None:intergenic | 25.0% |
| ! | TAAATAAAGGGAAGACAAAT+GGG | - | chr3.1:81567375-81567394 | None:intergenic | 25.0% |
| ! | TAAGGTTTAAATTAGAGTCT+TGG | + | chr3.1:81568039-81568058 | MS.gene32880:intron | 25.0% |
| ! | TAATTAAGTGATTTAAGCAG+TGG | - | chr3.1:81567669-81567688 | None:intergenic | 25.0% |
| ! | TACAAATCTATATGTAGGAT+AGG | - | chr3.1:81568294-81568313 | None:intergenic | 25.0% |
| ! | TCAAATATGTCAATTCAAAC+AGG | + | chr3.1:81566681-81566700 | MS.gene32880:intron | 25.0% |
| ! | TCCTGTTGAATTTATTTAAG+GGG | + | chr3.1:81566309-81566328 | MS.gene32880:intron | 25.0% |
| ! | TGCTAGAAGTAAAAATGTTT+CGG | + | chr3.1:81567042-81567061 | MS.gene32880:CDS | 25.0% |
| ! | TGTCTTGCTTCAATAAAAAA+GGG | + | chr3.1:81566802-81566821 | MS.gene32880:CDS | 25.0% |
| ! | TTAAAGACATACATTACACA+AGG | - | chr3.1:81566707-81566726 | None:intergenic | 25.0% |
| ! | TTGATGCATTAGATGAAAAA+AGG | + | chr3.1:81566212-81566231 | MS.gene32880:CDS | 25.0% |
| !! | ATATTGATGATTATTGAAGG+TGG | + | chr3.1:81566269-81566288 | MS.gene32880:intron | 25.0% |
| !! | TTGATCAATTTGAAACTGTT+TGG | + | chr3.1:81567756-81567775 | MS.gene32880:intron | 25.0% |
| !!! | AGATATCTTGGATTTTTTTG+AGG | + | chr3.1:81568662-81568681 | MS.gene32880:CDS | 25.0% |
| !!! | ATGTTTGTTATGTTGTGTTT+AGG | + | chr3.1:81566043-81566062 | MS.gene32880:intron | 25.0% |
| !!! | ATTTTAACAGATGCATACAT+TGG | - | chr3.1:81567277-81567296 | None:intergenic | 25.0% |
| !!! | TTTGTTCCTTTTAATTTGAC+TGG | + | chr3.1:81569569-81569588 | MS.gene32880:intron | 25.0% |
| AAATAAAGGGAAGACAAATG+GGG | - | chr3.1:81567374-81567393 | None:intergenic | 30.0% | |
| AAATAGGCTATTGAACTGAA+TGG | - | chr3.1:81568369-81568388 | None:intergenic | 30.0% | |
| AAATGCTACTGTACATCATA+CGG | - | chr3.1:81569486-81569505 | None:intergenic | 30.0% | |
| AAGAATATGTAACTTTCCTG+TGG | - | chr3.1:81568534-81568553 | None:intergenic | 30.0% | |
| ACTTATGAATAAGAGTCAGA+AGG | + | chr3.1:81568751-81568770 | MS.gene32880:intron | 30.0% | |
| AGAAACTAAAGACATCTTGT+AGG | - | chr3.1:81569164-81569183 | None:intergenic | 30.0% | |
| AGAAAGATCTTAATAGTCAG+AGG | + | chr3.1:81568628-81568647 | MS.gene32880:CDS | 30.0% | |
| AGGAATCCAGTCAAATTAAA+AGG | - | chr3.1:81569578-81569597 | None:intergenic | 30.0% | |
| AGTTCAATAGCCTATTTATC+CGG | + | chr3.1:81568372-81568391 | MS.gene32880:intron | 30.0% | |
| ATCTATATGTAGGATAGGTA+AGG | - | chr3.1:81568289-81568308 | None:intergenic | 30.0% | |
| CAAAAACATAAAAGGAGAAC+AGG | - | chr3.1:81567108-81567127 | None:intergenic | 30.0% | |
| CAGCAACAACAAAATATAAG+TGG | - | chr3.1:81567980-81567999 | None:intergenic | 30.0% | |
| CATACATTGGAACCTAATTT+GGG | - | chr3.1:81567264-81567283 | None:intergenic | 30.0% | |
| CCAATCTTCATTGAAATTTC+AGG | - | chr3.1:81568820-81568839 | None:intergenic | 30.0% | |
| CCTGAAATTTCAATGAAGAT+TGG | + | chr3.1:81568817-81568836 | MS.gene32880:CDS | 30.0% | |
| CTGACTATTAAGATCTTTCT+TGG | - | chr3.1:81568628-81568647 | None:intergenic | 30.0% | |
| CTGTCTTGCTTCAATAAAAA+AGG | + | chr3.1:81566801-81566820 | MS.gene32880:CDS | 30.0% | |
| GAAATTTCAATGAAGATTGG+TGG | + | chr3.1:81568820-81568839 | MS.gene32880:CDS | 30.0% | |
| GCAGTTATTAATTGAGAAGA+AGG | - | chr3.1:81567438-81567457 | None:intergenic | 30.0% | |
| GTAAATAAAGGGAAGACAAA+TGG | - | chr3.1:81567376-81567395 | None:intergenic | 30.0% | |
| TATATGAGTTACATCGTCTA+TGG | - | chr3.1:81567701-81567720 | None:intergenic | 30.0% | |
| TCAATGCAAAAATCTTTCTG+TGG | + | chr3.1:81568581-81568600 | MS.gene32880:CDS | 30.0% | |
| TCCTTATTGTTGAATCAACA+GGG | + | chr3.1:81569594-81569613 | MS.gene32880:intron | 30.0% | |
| TCTATATGTAGGATAGGTAA+GGG | - | chr3.1:81568288-81568307 | None:intergenic | 30.0% | |
| TGAAGCTGAATTCAAAACAT+TGG | + | chr3.1:81567502-81567521 | MS.gene32880:CDS | 30.0% | |
| TGAATTCAAAACATTGGCAA+AGG | + | chr3.1:81567508-81567527 | MS.gene32880:CDS | 30.0% | |
| TTCATTAAACATATGCAGGT+TGG | + | chr3.1:81569023-81569042 | MS.gene32880:intron | 30.0% | |
| TTCCTTATTGTTGAATCAAC+AGG | + | chr3.1:81569593-81569612 | MS.gene32880:intron | 30.0% | |
| TTCTCAATTAATAACTGCTG+TGG | + | chr3.1:81567440-81567459 | MS.gene32880:CDS | 30.0% | |
| ! | CATCCATATTGACTGAATAA+TGG | - | chr3.1:81569632-81569651 | None:intergenic | 30.0% |
| ! | GCTTTTTGTTGCCTTTTTTT+TGG | + | chr3.1:81569045-81569064 | MS.gene32880:intron | 30.0% |
| ! | TGATCTTTTATTGTCATGCT+AGG | + | chr3.1:81568783-81568802 | MS.gene32880:intron | 30.0% |
| ! | TTTTTCATCCCTCTTTCTAT+GGG | - | chr3.1:81567870-81567889 | None:intergenic | 30.0% |
| !! | ACTCTTGAAAGCATCAATTA+TGG | - | chr3.1:81566361-81566380 | None:intergenic | 30.0% |
| !! | CTATAATCACTTTTGTTGGA+GGG | + | chr3.1:81567184-81567203 | MS.gene32880:CDS | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3.1:81566564-81566583 | MS.gene32880:intron | 30.0% |
| !! | TATTTTAGATTTACTCCCTC+CGG | + | chr3.1:81568089-81568108 | MS.gene32880:intron | 30.0% |
| !! | TCATTTTTGTGTATAGTTGC+TGG | + | chr3.1:81567152-81567171 | MS.gene32880:intron | 30.0% |
| !! | TTGGCTATAATCACTTTTGT+TGG | + | chr3.1:81567180-81567199 | MS.gene32880:CDS | 30.0% |
| !!! | ACCAAATTCAGTTTTGAACA+AGG | + | chr3.1:81569356-81569375 | MS.gene32880:CDS | 30.0% |
| !!! | ATTTTTTTGAGGTATGTTGG+TGG | + | chr3.1:81568673-81568692 | MS.gene32880:intron | 30.0% |
| !!! | GGTACAATTTTTAGAGTAAC+AGG | + | chr3.1:81566472-81566491 | MS.gene32880:intron | 30.0% |
| !!! | TGGATTTTTTTGAGGTATGT+TGG | + | chr3.1:81568670-81568689 | MS.gene32880:intron | 30.0% |
| !!! | TTTTAGGTTTTTGTTTTGGC+TGG | + | chr3.1:81566451-81566470 | MS.gene32880:intron | 30.0% |
| !!! | TTTTTTCATCCCTCTTTCTA+TGG | - | chr3.1:81567871-81567890 | None:intergenic | 30.0% |
| AAAGAGTGAATAAGCTGAAG+CGG | - | chr3.1:81567398-81567417 | None:intergenic | 35.0% | |
| AAATCAATAAGCTGGAACCA+AGG | - | chr3.1:81568340-81568359 | None:intergenic | 35.0% | |
| AAGAGGGTCAGAAAAACAAA+AGG | - | chr3.1:81569115-81569134 | None:intergenic | 35.0% | |
| AAGCTGAAGCGGTAAATAAA+GGG | - | chr3.1:81567387-81567406 | None:intergenic | 35.0% | |
| AATCCAAGATATCTCTGAAC+AGG | - | chr3.1:81568656-81568675 | None:intergenic | 35.0% | |
| AATTTCATCAAGCACTTCCT+TGG | + | chr3.1:81568993-81569012 | MS.gene32880:CDS | 35.0% | |
| ACAACTAGGTGCCAAAAAAA+AGG | - | chr3.1:81569059-81569078 | None:intergenic | 35.0% | |
| AGATGCAAGAGTTATCTCTT+TGG | - | chr3.1:81566845-81566864 | None:intergenic | 35.0% | |
| AGCATCAATTATGGCTGAAA+AGG | - | chr3.1:81566352-81566371 | None:intergenic | 35.0% | |
| ATCAGCAGATAACAAGTGAA+AGG | - | chr3.1:81569300-81569319 | None:intergenic | 35.0% | |
| ATCTAGAAGACCGGATAAAT+AGG | - | chr3.1:81568385-81568404 | None:intergenic | 35.0% | |
| ATGCAAAAATCTTTCTGTGG+AGG | + | chr3.1:81568584-81568603 | MS.gene32880:CDS | 35.0% | |
| ATGGGTAAACGTAAGTTTCT+AGG | + | chr3.1:81565947-81565966 | MS.gene32880:intron | 35.0% | |
| CTTCAGCTTATTCACTCTTT+AGG | + | chr3.1:81567398-81567417 | MS.gene32880:intron | 35.0% | |
| GAAGTAAAAATGTTTCGGTG+AGG | + | chr3.1:81567047-81567066 | MS.gene32880:intron | 35.0% | |
| GCATACATTGGAACCTAATT+TGG | - | chr3.1:81567265-81567284 | None:intergenic | 35.0% | |
| GCCCCTTAAATAAATTCAAC+AGG | - | chr3.1:81566313-81566332 | None:intergenic | 35.0% | |
| GGCAATCTATTCTATAGACT+AGG | + | chr3.1:81568060-81568079 | MS.gene32880:intron | 35.0% | |
| GTCGATATTATACCTCTTAC+AGG | - | chr3.1:81567608-81567627 | None:intergenic | 35.0% | |
| GTCTTCTAGATAAAGAAGAC+AGG | + | chr3.1:81568394-81568413 | MS.gene32880:CDS | 35.0% | |
| GTCTTCTTTATCTAGAAGAC+CGG | - | chr3.1:81568394-81568413 | None:intergenic | 35.0% | |
| TAAGCTGAAGCGGTAAATAA+AGG | - | chr3.1:81567388-81567407 | None:intergenic | 35.0% | |
| TAGATAAAATGTACTCCCTC+TGG | - | chr3.1:81568241-81568260 | None:intergenic | 35.0% | |
| TAGCAAGAGATTCATCCAAA+GGG | - | chr3.1:81567027-81567046 | None:intergenic | 35.0% | |
| TCCTAATAATTTAGTCCGGA+GGG | - | chr3.1:81568107-81568126 | None:intergenic | 35.0% | |
| TGGGATTACATTTCTCTTGA+GGG | - | chr3.1:81567960-81567979 | None:intergenic | 35.0% | |
| TGGGTAAACGTAAGTTTCTA+GGG | + | chr3.1:81565948-81565967 | MS.gene32880:intron | 35.0% | |
| TTCCTAATAATTTAGTCCGG+AGG | - | chr3.1:81568108-81568127 | None:intergenic | 35.0% | |
| ! | ACAAGCTTTTGACAACAACT+AGG | - | chr3.1:81569073-81569092 | None:intergenic | 35.0% |
| ! | CTTTTATTGTCATGCTAGGA+TGG | + | chr3.1:81568787-81568806 | MS.gene32880:intron | 35.0% |
| ! | GAATAACACTTCACGCATTT+TGG | + | chr3.1:81567839-81567858 | MS.gene32880:intron | 35.0% |
| ! | GCCTTGTTCAAAACTGAATT+TGG | - | chr3.1:81569360-81569379 | None:intergenic | 35.0% |
| ! | GTTTGGAGTTTCACACAATA+GGG | + | chr3.1:81567773-81567792 | MS.gene32880:intron | 35.0% |
| ! | TATCGATAAATTTTCGACCG+AGG | + | chr3.1:81568470-81568489 | MS.gene32880:CDS | 35.0% |
| ! | TGTTTGGAGTTTCACACAAT+AGG | + | chr3.1:81567772-81567791 | MS.gene32880:intron | 35.0% |
| !! | GCTATAATCACTTTTGTTGG+AGG | + | chr3.1:81567183-81567202 | MS.gene32880:CDS | 35.0% |
| !!! | CTGGCTCTAATTTTTGAGAT+TGG | + | chr3.1:81568444-81568463 | MS.gene32880:CDS | 35.0% |
| AAAAATCTTTCTGTGGAGGC+TGG | + | chr3.1:81568588-81568607 | MS.gene32880:CDS | 40.0% | |
| AAGTCGTTGTCCTAATACCA+CGG | - | chr3.1:81569141-81569160 | None:intergenic | 40.0% | |
| AATGGCGAACATAGAATGTC+TGG | + | chr3.1:81569207-81569226 | MS.gene32880:CDS | 40.0% | |
| ACAGGCAATTTCAACTCACT+AGG | + | chr3.1:81566490-81566509 | MS.gene32880:intron | 40.0% | |
| AGAAGAAACAGAGCGATCAA+TGG | + | chr3.1:81567215-81567234 | MS.gene32880:CDS | 40.0% | |
| AGCAAGAGATTCATCCAAAG+GGG | - | chr3.1:81567026-81567045 | None:intergenic | 40.0% | |
| AGCGATCAATGGACATAATG+TGG | + | chr3.1:81567226-81567245 | MS.gene32880:CDS | 40.0% | |
| ATCACTTGCATTCTTAGCCT+CGG | - | chr3.1:81568490-81568509 | None:intergenic | 40.0% | |
| ATTCAGCTTCAGATTGCCTA+CGG | - | chr3.1:81567493-81567512 | None:intergenic | 40.0% | |
| CAGGCAATTTCAACTCACTA+GGG | + | chr3.1:81566491-81566510 | MS.gene32880:intron | 40.0% | |
| CATTGGAACCTAATTTGGGA+TGG | - | chr3.1:81567260-81567279 | None:intergenic | 40.0% | |
| CGGCCATTATTCAGTCAATA+TGG | + | chr3.1:81569626-81569645 | MS.gene32880:CDS | 40.0% | |
| CTAGCAAGAGATTCATCCAA+AGG | - | chr3.1:81567028-81567047 | None:intergenic | 40.0% | |
| CTCAATGCCATAGATGATGT+AGG | + | chr3.1:81567642-81567661 | MS.gene32880:intron | 40.0% | |
| GAACCTGTTCAGAGATATCT+TGG | + | chr3.1:81568650-81568669 | MS.gene32880:CDS | 40.0% | |
| GACACATTCATGAGATCAGA+TGG | - | chr3.1:81566142-81566161 | None:intergenic | 40.0% | |
| GGGGTTCATTAAACATATGC+AGG | + | chr3.1:81569019-81569038 | MS.gene32880:CDS | 40.0% | |
| GTGGGATTACATTTCTCTTG+AGG | - | chr3.1:81567961-81567980 | None:intergenic | 40.0% | |
| TACTTATAGTAGAGGCCAGA+GGG | + | chr3.1:81568223-81568242 | MS.gene32880:intron | 40.0% | |
| TATTGTTGAATCAACAGGGC+AGG | + | chr3.1:81569598-81569617 | MS.gene32880:intron | 40.0% | |
| TCAAGAAGAGAGTAAACCAC+AGG | + | chr3.1:81568515-81568534 | MS.gene32880:CDS | 40.0% | |
| TCATTCCATTGCAGGTTGTT+TGG | + | chr3.1:81566946-81566965 | MS.gene32880:intron | 40.0% | |
| TCCCTCCGGACTAAATTATT+AGG | + | chr3.1:81568103-81568122 | MS.gene32880:intron | 40.0% | |
| TCCTCTGCACGTAAAAGAAT+AGG | - | chr3.1:81569326-81569345 | None:intergenic | 40.0% | |
| TCTACACTTGTGAGACTGTT+CGG | - | chr3.1:81566656-81566675 | None:intergenic | 40.0% | |
| TCTGATCTCATGAATGTGTC+TGG | + | chr3.1:81566142-81566161 | MS.gene32880:CDS | 40.0% | |
| TGAAGAATCTGTTACCCCTT+TGG | + | chr3.1:81567009-81567028 | MS.gene32880:CDS | 40.0% | |
| TGGACTAACCCATAGAAAGA+GGG | + | chr3.1:81567859-81567878 | MS.gene32880:intron | 40.0% | |
| TTACTTATAGTAGAGGCCAG+AGG | + | chr3.1:81568222-81568241 | MS.gene32880:intron | 40.0% | |
| TTGGACTAACCCATAGAAAG+AGG | + | chr3.1:81567858-81567877 | MS.gene32880:intron | 40.0% | |
| ! | ACCTATTCTTTTACGTGCAG+AGG | + | chr3.1:81569322-81569341 | MS.gene32880:intron | 40.0% |
| ! | TAAGTCTTGTGATGTCAGTG+AGG | + | chr3.1:81569256-81569275 | MS.gene32880:intron | 40.0% |
| ! | TAGAATGTCTGGTGGTGAAA+AGG | + | chr3.1:81569218-81569237 | MS.gene32880:CDS | 40.0% |
| ! | TGCGTGAAGTGTTATTCTAG+TGG | - | chr3.1:81567836-81567855 | None:intergenic | 40.0% |
| !! | GCCCTGTTGATTCAACAATA+AGG | - | chr3.1:81569598-81569617 | None:intergenic | 40.0% |
| !! | TTCCTTGTGTAGCTGTTTCT+TGG | + | chr3.1:81568314-81568333 | MS.gene32880:intron | 40.0% |
| !!! | ATTCAGTTTTGAACAAGGCC+AGG | + | chr3.1:81569361-81569380 | MS.gene32880:CDS | 40.0% |
| AATCAACAGGGCAGGAACTT+CGG | + | chr3.1:81569606-81569625 | MS.gene32880:intron | 45.0% | |
| ACCGCTGCTTATTGAGTAAC+TGG | - | chr3.1:81569389-81569408 | None:intergenic | 45.0% | |
| ACTCTTGCATCTCAAGCCAT+TGG | + | chr3.1:81566853-81566872 | MS.gene32880:CDS | 45.0% | |
| AGGTCAGTAAGAATTGCTGC+TGG | + | chr3.1:81568414-81568433 | MS.gene32880:CDS | 45.0% | |
| ATCGCTACATCCAACTGTCA+AGG | - | chr3.1:81566972-81566991 | None:intergenic | 45.0% | |
| ATGTCAGTGAGGACTTTCAC+TGG | + | chr3.1:81569267-81569286 | MS.gene32880:intron | 45.0% | |
| ATTCTCTACAGACATCGTCG+TGG | + | chr3.1:81568845-81568864 | MS.gene32880:CDS | 45.0% | |
| CAGTGGTCCTACATCATCTA+TGG | - | chr3.1:81567652-81567671 | None:intergenic | 45.0% | |
| CCATTCATGCTTCCTGTAAG+AGG | + | chr3.1:81567593-81567612 | MS.gene32880:intron | 45.0% | |
| CCCAGTTACTCAATAAGCAG+CGG | + | chr3.1:81569385-81569404 | MS.gene32880:CDS | 45.0% | |
| CCGCTGCTTATTGAGTAACT+GGG | - | chr3.1:81569388-81569407 | None:intergenic | 45.0% | |
| CGAGTGATCCATCCCAAATT+AGG | + | chr3.1:81567249-81567268 | MS.gene32880:CDS | 45.0% | |
| CTACACTTGTGAGACTGTTC+GGG | - | chr3.1:81566655-81566674 | None:intergenic | 45.0% | |
| CTTATTGAGTAACTGGGTCC+TGG | - | chr3.1:81569382-81569401 | None:intergenic | 45.0% | |
| GAGTTACATCGTCTATGGAC+TGG | - | chr3.1:81567696-81567715 | None:intergenic | 45.0% | |
| GCATAAATGACAGCGAAGCA+AGG | - | chr3.1:81569512-81569531 | None:intergenic | 45.0% | |
| GTCGTGGTCTCAAATGATAC+AGG | + | chr3.1:81568861-81568880 | MS.gene32880:CDS | 45.0% | |
| TAAGCAGCGGTTACAATCTG+AGG | + | chr3.1:81569398-81569417 | MS.gene32880:CDS | 45.0% | |
| TCATCAAGCACTTCCTTGGA+GGG | + | chr3.1:81568997-81569016 | MS.gene32880:CDS | 45.0% | |
| TGTATAGTTGCTGGACTGCT+TGG | + | chr3.1:81567161-81567180 | MS.gene32880:intron | 45.0% | |
| TTCATCAAGCACTTCCTTGG+AGG | + | chr3.1:81568996-81569015 | MS.gene32880:CDS | 45.0% | |
| ! | CCTCTTACAGGAAGCATGAA+TGG | - | chr3.1:81567596-81567615 | None:intergenic | 45.0% |
| ! | TCTTTTCTCCTCTCTACCGT+AGG | + | chr3.1:81567474-81567493 | MS.gene32880:CDS | 45.0% |
| !! | CAACTCACTAGGGCATTGTT+TGG | + | chr3.1:81566501-81566520 | MS.gene32880:intron | 45.0% |
| !! | TTATTTAAGGGGCACCACGA+GGG | + | chr3.1:81566320-81566339 | MS.gene32880:intron | 45.0% |
| !! | TTTATTTAAGGGGCACCACG+AGG | + | chr3.1:81566319-81566338 | MS.gene32880:intron | 45.0% |
| !!! | TGAAAAGGCATTTTCCCTCG+TGG | - | chr3.1:81566337-81566356 | None:intergenic | 45.0% |
| AATCTTTCTGTGGAGGCTGG+TGG | + | chr3.1:81568591-81568610 | MS.gene32880:CDS | 50.0% | |
| AATTGCTGCTGGTGAAGCAC+TGG | + | chr3.1:81568425-81568444 | MS.gene32880:CDS | 50.0% | |
| ATCAAGCACTTCCTTGGAGG+GGG | + | chr3.1:81568999-81569018 | MS.gene32880:CDS | 50.0% | |
| CAAGGCCAAACAACCTGCAA+TGG | - | chr3.1:81566954-81566973 | None:intergenic | 50.0% | |
| CATCAAGCACTTCCTTGGAG+GGG | + | chr3.1:81568998-81569017 | MS.gene32880:CDS | 50.0% | |
| CCTAATACCACGGAGGAAGA+GGG | - | chr3.1:81569131-81569150 | None:intergenic | 50.0% | |
| GGCCAAGAAACAGCTACACA+AGG | - | chr3.1:81568319-81568338 | None:intergenic | 50.0% | |
| GGCGAACATAGAATGTCTGG+TGG | + | chr3.1:81569210-81569229 | MS.gene32880:CDS | 50.0% | |
| GTTTAATGAACCCCCCTCCA+AGG | - | chr3.1:81569013-81569032 | None:intergenic | 50.0% | |
| TAACTGCTGTGGTGTCTGCA+TGG | + | chr3.1:81567451-81567470 | MS.gene32880:CDS | 50.0% | |
| TCAGATTGCCTACGGTAGAG+AGG | - | chr3.1:81567485-81567504 | None:intergenic | 50.0% | |
| TCCTAATACCACGGAGGAAG+AGG | - | chr3.1:81569132-81569151 | None:intergenic | 50.0% | |
| TCGTTGTCCTAATACCACGG+AGG | - | chr3.1:81569138-81569157 | None:intergenic | 50.0% | |
| !! | GGTTGTTTGGCCTTGACAGT+TGG | + | chr3.1:81566959-81566978 | MS.gene32880:intron | 50.0% |
| !! | GTGTAGCTGTTTCTTGGCCT+TGG | + | chr3.1:81568320-81568339 | MS.gene32880:intron | 50.0% |
| CCCTCTTCCTCCGTGGTATT+AGG | + | chr3.1:81569128-81569147 | MS.gene32880:intron | 55.0% | |
| TCAAGCACTTCCTTGGAGGG+GGG | + | chr3.1:81569000-81569019 | MS.gene32880:CDS | 55.0% | |
| TCTGTGGAGGCTGGTGGAAA+AGG | + | chr3.1:81568597-81568616 | MS.gene32880:CDS | 55.0% | |
| TTTCTGACCCTCTTCCTCCG+TGG | + | chr3.1:81569121-81569140 | MS.gene32880:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81565947 | 81569659 | 81565947 | ID=MS.gene32880 |
| chr3.1 | mRNA | 81565947 | 81569659 | 81565947 | ID=MS.gene32880.t1;Parent=MS.gene32880 |
| chr3.1 | exon | 81565947 | 81565956 | 81565947 | ID=MS.gene32880.t1.exon1;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81565947 | 81565956 | 81565947 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81566065 | 81566233 | 81566065 | ID=MS.gene32880.t1.exon2;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81566065 | 81566233 | 81566065 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81566329 | 81566409 | 81566329 | ID=MS.gene32880.t1.exon3;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81566329 | 81566409 | 81566329 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81566780 | 81566874 | 81566780 | ID=MS.gene32880.t1.exon4;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81566780 | 81566874 | 81566780 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81566960 | 81567063 | 81566960 | ID=MS.gene32880.t1.exon5;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81566960 | 81567063 | 81566960 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81567168 | 81567278 | 81567168 | ID=MS.gene32880.t1.exon6;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81567168 | 81567278 | 81567168 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81567420 | 81567529 | 81567420 | ID=MS.gene32880.t1.exon7;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81567420 | 81567529 | 81567420 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81568374 | 81568683 | 81568374 | ID=MS.gene32880.t1.exon8;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81568374 | 81568683 | 81568374 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81568805 | 81568882 | 81568805 | ID=MS.gene32880.t1.exon9;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81568805 | 81568882 | 81568805 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81568990 | 81569040 | 81568990 | ID=MS.gene32880.t1.exon10;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81568990 | 81569040 | 81568990 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81569150 | 81569239 | 81569150 | ID=MS.gene32880.t1.exon11;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81569150 | 81569239 | 81569150 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81569342 | 81569419 | 81569342 | ID=MS.gene32880.t1.exon12;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81569342 | 81569419 | 81569342 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| chr3.1 | exon | 81569615 | 81569659 | 81569615 | ID=MS.gene32880.t1.exon13;Parent=MS.gene32880.t1 |
| chr3.1 | CDS | 81569615 | 81569659 | 81569615 | ID=cds.MS.gene32880.t1;Parent=MS.gene32880.t1 |
| Gene Sequence |
| Protein sequence |
