Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055505.t1 | XP_003602797.1 | 98.7 | 528 | 7 | 0 | 1 | 528 | 1 | 528 | 4.50E-266 | 926.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055505.t1 | Q9FMV3 | 69.9 | 459 | 127 | 6 | 24 | 478 | 36 | 487 | 6.4e-176 | 618.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055505.t1 | G7J3V3 | 98.7 | 528 | 7 | 0 | 1 | 528 | 1 | 528 | 3.3e-266 | 926.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052641 | MS.gene055505 | 0.822902 | 1.85E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene057668 | 0.810884 | 9.23E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene061787 | 0.824507 | 7.77E-54 | -1.69E-46 |
| MS.gene055505 | MS.gene065061 | -0.818178 | 2.24E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene065164 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene065448 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene065450 | 0.813565 | 2.40E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene065485 | 0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene055505 | MS.gene06652 | 0.803935 | 2.75E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene066720 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene071540 | 0.837997 | 3.73E-57 | -1.69E-46 |
| MS.gene055505 | MS.gene071541 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene055505 | MS.gene08797 | -0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene20991 | 0.818724 | 1.69E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene21049 | 0.845296 | 4.44E-59 | -1.69E-46 |
| MS.gene055505 | MS.gene22247 | 0.809411 | 1.92E-50 | -1.69E-46 |
| MS.gene055505 | MS.gene22970 | 0.836753 | 7.78E-57 | -1.69E-46 |
| MS.gene055505 | MS.gene23961 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene28654 | 0.858333 | 8.85E-63 | -1.69E-46 |
| MS.gene055505 | MS.gene29003 | 0.845956 | 2.94E-59 | -1.69E-46 |
| MS.gene055505 | MS.gene29033 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene30747 | 0.831897 | 1.29E-55 | -1.69E-46 |
| MS.gene055505 | MS.gene31685 | 0.845077 | 5.09E-59 | -1.69E-46 |
| MS.gene055505 | MS.gene32863 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene32880 | 0.839102 | 1.94E-57 | -1.69E-46 |
| MS.gene055505 | MS.gene35639 | 0.822266 | 2.60E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene37486 | 0.86277 | 4.01E-64 | -1.69E-46 |
| MS.gene055505 | MS.gene39313 | 0.851514 | 8.45E-61 | -1.69E-46 |
| MS.gene055505 | MS.gene40755 | 0.829875 | 4.03E-55 | -1.69E-46 |
| MS.gene055505 | MS.gene47798 | 0.813191 | 2.90E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene50108 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene055505 | MS.gene52114 | 0.826254 | 3.00E-54 | -1.69E-46 |
| MS.gene055505 | MS.gene60378 | 0.813161 | 2.94E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene62888 | -0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene055505 | MS.gene66968 | 0.816667 | 4.91E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene69268 | 0.821215 | 4.55E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene71931 | -0.802672 | 5.02E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene72935 | 0.811125 | 8.19E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene76514 | 0.810144 | 1.33E-50 | -1.69E-46 |
| MS.gene055505 | MS.gene77971 | -0.810731 | 9.96E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene80182 | -0.812406 | 4.31E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene85129 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene055505 | MS.gene88881 | 0.830924 | 2.23E-55 | -1.69E-46 |
| MS.gene055505 | MS.gene88883 | 0.82833 | 9.55E-55 | -1.69E-46 |
| MS.gene055505 | MS.gene90387 | 0.822364 | 2.46E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene90428 | 0.820823 | 5.59E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene90429 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene055505 | MS.gene90430 | 0.815803 | 7.67E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene91190 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene055505 | MS.gene92043 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene055505 | MS.gene95742 | 0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene98498 | 0.801773 | 7.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72190 | MS.gene055505 | PPI |
| MS.gene071383 | MS.gene055505 | PPI |
| MS.gene06229 | MS.gene055505 | PPI |
| MS.gene030445 | MS.gene055505 | PPI |
| MS.gene055505 | MS.gene013153 | PPI |
| MS.gene055505 | MS.gene000935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055505.t1 | MTR_3g099100 | 98.485 | 528 | 8 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1067 |
| MS.gene055505.t1 | MTR_8g096850 | 71.992 | 532 | 139 | 4 | 3 | 526 | 2 | 531 | 0.0 | 749 |
| MS.gene055505.t1 | MTR_8g094780 | 55.711 | 499 | 202 | 9 | 37 | 527 | 45 | 532 | 0.0 | 537 |
| MS.gene055505.t1 | MTR_3g097010 | 52.182 | 527 | 236 | 9 | 5 | 527 | 2 | 516 | 0.0 | 531 |
| MS.gene055505.t1 | MTR_3g097010 | 49.905 | 527 | 210 | 10 | 5 | 527 | 2 | 478 | 5.74e-171 | 492 |
| MS.gene055505.t1 | MTR_3g097010 | 53.319 | 467 | 202 | 9 | 65 | 527 | 1 | 455 | 4.66e-170 | 489 |
| MS.gene055505.t1 | MTR_8g044820 | 70.909 | 55 | 16 | 0 | 35 | 89 | 45 | 99 | 7.94e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055505.t1 | AT5G50640 | 67.475 | 495 | 151 | 5 | 36 | 527 | 58 | 545 | 0.0 | 664 |
| MS.gene055505.t1 | AT5G50530 | 67.475 | 495 | 151 | 5 | 36 | 527 | 58 | 545 | 0.0 | 664 |
| MS.gene055505.t1 | AT5G63490 | 65.887 | 513 | 158 | 8 | 24 | 527 | 36 | 540 | 0.0 | 642 |
| MS.gene055505.t1 | AT5G63490 | 65.887 | 513 | 158 | 8 | 24 | 527 | 36 | 540 | 0.0 | 642 |
| MS.gene055505.t1 | AT3G52950 | 59.161 | 453 | 173 | 6 | 37 | 483 | 60 | 506 | 0.0 | 537 |
| MS.gene055505.t1 | AT3G52950 | 59.161 | 453 | 173 | 6 | 37 | 483 | 60 | 506 | 0.0 | 537 |
| MS.gene055505.t1 | AT2G36500 | 54.382 | 502 | 207 | 8 | 29 | 527 | 51 | 533 | 0.0 | 523 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAAGTACAAGATAAAA+AGG | 0.176006 | 3.2:+82478244 | MS.gene055505:CDS |
| GCCGGAGCTGCCCTTGTTGC+TGG | 0.186837 | 3.2:+82480986 | MS.gene055505:CDS |
| CCACCTTGATGCAAAGGTTT+TGG | 0.193956 | 3.2:+82478009 | MS.gene055505:CDS |
| ACCAACCTTGCACCATCTTT+TGG | 0.249187 | 3.2:-82474635 | None:intergenic |
| TCATATACAGTTGTTGTTTC+GGG | 0.250598 | 3.2:-82474294 | None:intergenic |
| ATTATTACACATTCTGGATT+TGG | 0.263880 | 3.2:-82476720 | None:intergenic |
| AGTGAGAGCTCCTTCAAAAT+AGG | 0.276671 | 3.2:+82478155 | MS.gene055505:intron |
| CGTGGAGAATGGAGAAGTTT+TGG | 0.278792 | 3.2:+82474761 | MS.gene055505:CDS |
| AGAATTTGAGGCAGATTGTT+AGG | 0.283716 | 3.2:-82480394 | None:intergenic |
| TTCATATACAGTTGTTGTTT+CGG | 0.284586 | 3.2:-82474295 | None:intergenic |
| GTATCAATTATTACACATTC+TGG | 0.285057 | 3.2:-82476726 | None:intergenic |
| CACTGGGGATCTTCTAATTC+TGG | 0.304511 | 3.2:+82474888 | MS.gene055505:CDS |
| CTCGCTTCAAGTATGTTAAA+AGG | 0.309592 | 3.2:-82481015 | None:intergenic |
| GCAGACTCAGAGGCTCTTCT+AGG | 0.321696 | 3.2:-82473284 | None:intergenic |
| TAACAATCTGCCTCAAATTC+TGG | 0.323404 | 3.2:+82480396 | MS.gene055505:CDS |
| TTGGAAACAGGTGTGTCTTC+AGG | 0.332085 | 3.2:-82474555 | None:intergenic |
| GCTGCCCTTGTTGCTGGCTT+AGG | 0.335023 | 3.2:+82480992 | MS.gene055505:CDS |
| GGTTCTGATGGAGGAGAAAC+AGG | 0.351814 | 3.2:+82478176 | MS.gene055505:CDS |
| TACTTTGAAGGAAAATGTAT+TGG | 0.355418 | 3.2:-82478231 | None:intergenic |
| CACAGGAAAGGTTCACGTTC+GGG | 0.363196 | 3.2:+82480908 | MS.gene055505:CDS |
| GAATTGGACAGGGGTTTAAC+AGG | 0.363372 | 3.2:+82474225 | MS.gene055505:intron |
| CATCATTTGTTGAGGCCCTT+CGG | 0.368161 | 3.2:+82475048 | MS.gene055505:CDS |
| GTTTCATCGTCATCATCATT+TGG | 0.371602 | 3.2:-82478053 | None:intergenic |
| ACTTTGAAGGAAAATGTATT+GGG | 0.391529 | 3.2:-82478230 | None:intergenic |
| GCCAGCAACAAGGGCAGCTC+CGG | 0.393231 | 3.2:-82480987 | None:intergenic |
| GTACGTCGACAGGAAAATTT+AGG | 0.394925 | 3.2:+82474727 | MS.gene055505:intron |
| CTTGTCATAACCTTGGAAAC+AGG | 0.399483 | 3.2:-82474567 | None:intergenic |
| ATCATTTGTTGAGGCCCTTC+GGG | 0.407577 | 3.2:+82475049 | MS.gene055505:CDS |
| AGACCATGATAAAGTTGTAT+TGG | 0.413757 | 3.2:+82480523 | MS.gene055505:CDS |
| GCAATTGCAGCAGCTGTTGA+AGG | 0.420737 | 3.2:+82474855 | MS.gene055505:CDS |
| CATCTTCCGGTGGTTGATAG+AGG | 0.421884 | 3.2:+82476795 | MS.gene055505:CDS |
| GATTCTAACGGGTTGCTTTG+TGG | 0.422235 | 3.2:+82474366 | MS.gene055505:CDS |
| TGTGCCGTTGTTACTGTTGA+TGG | 0.422789 | 3.2:+82475305 | MS.gene055505:CDS |
| TGCAAGGACTGTTGGTTTGA+AGG | 0.427993 | 3.2:+82480580 | MS.gene055505:CDS |
| TTTGAAAACAACAAAGAAGA+TGG | 0.433460 | 3.2:+82475265 | MS.gene055505:CDS |
| TGCTGTGGCTACTGTTAGTC+AGG | 0.436331 | 3.2:+82476948 | MS.gene055505:CDS |
| TTAAAACCTCCGTCATGCTC+CGG | 0.438057 | 3.2:-82480336 | None:intergenic |
| AAATAAAGTACCTTCTCAAC+AGG | 0.439105 | 3.2:-82475545 | None:intergenic |
| GTCTTCAGGATTTATCTCTT+CGG | 0.440857 | 3.2:-82474541 | None:intergenic |
| GAAATTGTATTTAGACTATG+AGG | 0.441637 | 3.2:+82480874 | MS.gene055505:CDS |
| CATCTACCTGTCGTGGAGAA+TGG | 0.441918 | 3.2:+82474750 | MS.gene055505:CDS |
| TCTGAGTCTGCCGTCGGAAG+AGG | 0.444441 | 3.2:+82473296 | MS.gene055505:CDS |
| GGCATGCTTGCAGAAATATA+AGG | 0.449708 | 3.2:-82478209 | None:intergenic |
| CAAGGTTATGACAAGAAATC+CGG | 0.454010 | 3.2:+82474575 | MS.gene055505:CDS |
| CGGATTTCTTGTCATAACCT+TGG | 0.463058 | 3.2:-82474574 | None:intergenic |
| GTAATAGAGCATCCACCCTC+CGG | 0.465246 | 3.2:-82474338 | None:intergenic |
| TATCAGTACCAAGTCTTTGA+AGG | 0.465963 | 3.2:-82480366 | None:intergenic |
| TATTACTAACCGATTCTAAC+GGG | 0.469332 | 3.2:+82474355 | MS.gene055505:CDS |
| GCACGATGCCACTGCACGTA+TGG | 0.474937 | 3.2:+82474809 | MS.gene055505:CDS |
| GTATGAAGTGCATCGACAAT+TGG | 0.484525 | 3.2:-82476750 | None:intergenic |
| GAATTTGAGGCAGATTGTTA+GGG | 0.485640 | 3.2:-82480393 | None:intergenic |
| GCATATAGTGGTGTTGCTGC+CGG | 0.487780 | 3.2:+82480968 | MS.gene055505:CDS |
| TTGGAAAGTACCAGAATTTG+AGG | 0.488750 | 3.2:-82480406 | None:intergenic |
| TCACAGGAAAGGTTCACGTT+CGG | 0.490167 | 3.2:+82480907 | MS.gene055505:CDS |
| CTTGTCGTCGGATGGCTGCC+CGG | 0.491991 | 3.2:+82474319 | MS.gene055505:CDS |
| ACAAAGCAACCCGTTAGAAT+CGG | 0.498034 | 3.2:-82474364 | None:intergenic |
| CTTCCACCACCTTGATGCAA+AGG | 0.505424 | 3.2:+82478003 | MS.gene055505:CDS |
| TGCCACTGCACGTATGGAAA+GGG | 0.506679 | 3.2:+82474815 | MS.gene055505:CDS |
| AGTTCTATCCTTCAAAGACT+TGG | 0.509699 | 3.2:+82480358 | MS.gene055505:CDS |
| CCTTTCTGAAACTCTTGCTG+TGG | 0.513992 | 3.2:+82474605 | MS.gene055505:CDS |
| AGCATGCGTATTCAGATGCA+TGG | 0.518010 | 3.2:+82480939 | MS.gene055505:CDS |
| TCGTCGGATGGCTGCCCGGA+GGG | 0.518130 | 3.2:+82474323 | MS.gene055505:CDS |
| AAACCTTTGCATCAAGGTGG+TGG | 0.518188 | 3.2:-82478006 | None:intergenic |
| ATGGAAAGGGCCGCAGAGAA+AGG | 0.521302 | 3.2:+82474828 | MS.gene055505:CDS |
| ATCCCAAAACCTTTGCATCA+AGG | 0.522360 | 3.2:-82478012 | None:intergenic |
| GAAGTCATTGCGTCTTTCAA+AGG | 0.523215 | 3.2:+82474260 | MS.gene055505:CDS |
| TCCTTCAAAATAGGTTCTGA+TGG | 0.525824 | 3.2:+82478164 | MS.gene055505:CDS |
| GCATGGGCCTCAGCATATAG+TGG | 0.528916 | 3.2:+82480956 | MS.gene055505:CDS |
| GTTTCAGAAAGGACAAATAC+CGG | 0.529303 | 3.2:-82474594 | None:intergenic |
| TAAAACCTCCGTCATGCTCC+GGG | 0.530821 | 3.2:-82480335 | None:intergenic |
| TCGGATGGCTGCCCGGAGGG+TGG | 0.531721 | 3.2:+82474326 | MS.gene055505:CDS |
| TTCTCAACAGGAGTTGATGC+TGG | 0.537127 | 3.2:-82475533 | None:intergenic |
| CCGCAGCTGTGGACCATGCA+AGG | 0.538951 | 3.2:+82480564 | MS.gene055505:CDS |
| CAGTGATCTTGCCGCAGCTG+TGG | 0.540584 | 3.2:+82480553 | MS.gene055505:CDS |
| GTCATCATCATTTGGAGGCA+AGG | 0.542220 | 3.2:-82478045 | None:intergenic |
| GCATACAAATTTCAGTTCAA+GGG | 0.542417 | 3.2:+82475475 | MS.gene055505:intron |
| AAGCCAATACAACTTTATCA+TGG | 0.544514 | 3.2:-82480526 | None:intergenic |
| ATGAGGGAACACGTGGTCAC+AGG | 0.545902 | 3.2:+82480891 | MS.gene055505:CDS |
| TGAATTCTCATGAATGATTG+TGG | 0.547590 | 3.2:-82475096 | None:intergenic |
| CTCTAATTCATCATTTGTTG+AGG | 0.548165 | 3.2:+82475040 | MS.gene055505:CDS |
| CTATTACTAACCGATTCTAA+CGG | 0.548169 | 3.2:+82474354 | MS.gene055505:CDS |
| AATTGAAGATGGCGAGTCGA+AGG | 0.554524 | 3.2:+82473249 | None:intergenic |
| TAATAGAGCATCCACCCTCC+GGG | 0.555067 | 3.2:-82474337 | None:intergenic |
| TTCAAGGGATATCTTGATGC+GGG | 0.556442 | 3.2:+82475490 | MS.gene055505:CDS |
| TGAAGACACACCTGTTTCCA+AGG | 0.557672 | 3.2:+82474557 | MS.gene055505:CDS |
| GAGTCTGCCGTCGGAAGAGG+AGG | 0.559431 | 3.2:+82473299 | MS.gene055505:CDS |
| CCACAGCAAGAGTTTCAGAA+AGG | 0.562156 | 3.2:-82474605 | None:intergenic |
| ACTTCTCCATTCTCCACGAC+AGG | 0.562678 | 3.2:-82474756 | None:intergenic |
| GCACTTCATACTATGCATGA+TGG | 0.565198 | 3.2:+82476762 | MS.gene055505:CDS |
| ATGCCACTGCACGTATGGAA+AGG | 0.566604 | 3.2:+82474814 | MS.gene055505:CDS |
| AAGATGGTTGAACTTCATGC+AGG | 0.567866 | 3.2:+82475281 | MS.gene055505:CDS |
| TGCATACGAGTTTAGATACC+CGG | 0.570157 | 3.2:+82480317 | MS.gene055505:intron |
| ATTTAGGCATCTACCTGTCG+TGG | 0.572148 | 3.2:+82474743 | MS.gene055505:CDS |
| GGCCCTTTCCATACGTGCAG+TGG | 0.574352 | 3.2:-82474817 | None:intergenic |
| TACATACATAGGGCGTGCTA+AGG | 0.575654 | 3.2:-82473339 | None:intergenic |
| AGCATCAACTCCTGTTGAGA+AGG | 0.578946 | 3.2:+82475535 | MS.gene055505:CDS |
| GGAAACAGATGGCATGGTAG+TGG | 0.580860 | 3.2:+82476894 | MS.gene055505:intron |
| TCATCGTCATCATCATTTGG+AGG | 0.583345 | 3.2:-82478050 | None:intergenic |
| ATATGAAGCTTGTCGTCGGA+TGG | 0.588778 | 3.2:+82474311 | MS.gene055505:CDS |
| ACTTTACCTCTATCAACCAC+CGG | 0.591116 | 3.2:-82476801 | None:intergenic |
| ACATGTGACTCATGCTGCTG+TGG | 0.591309 | 3.2:+82476933 | MS.gene055505:CDS |
| AGATGGCATGGTAGTGGCTG+TGG | 0.591560 | 3.2:+82476900 | MS.gene055505:intron |
| ATCATTTGGAGGCAAGGCCA+TGG | 0.592374 | 3.2:-82478039 | None:intergenic |
| TTTAGATACCCGGAGCATGA+CGG | 0.592463 | 3.2:+82480327 | MS.gene055505:intron |
| CCTTGCATGGTCCACAGCTG+CGG | 0.592524 | 3.2:-82480564 | None:intergenic |
| AAGGCCTAAGCCAGCAACAA+GGG | 0.592955 | 3.2:-82480996 | None:intergenic |
| GTGGACCATGCAAGGACTGT+TGG | 0.596875 | 3.2:+82480572 | MS.gene055505:CDS |
| GCCCTCCAAAAGATGGTGCA+AGG | 0.596892 | 3.2:+82474630 | MS.gene055505:CDS |
| TCAAACCAACAGTCCTTGCA+TGG | 0.602075 | 3.2:-82480577 | None:intergenic |
| TGCTTGCAGAAATATAAGGA+AGG | 0.602186 | 3.2:-82478205 | None:intergenic |
| GGAACACGTGGTCACAGGAA+AGG | 0.606170 | 3.2:+82480896 | MS.gene055505:CDS |
| TCAACAGGAGTTGATGCTGG+TGG | 0.611432 | 3.2:-82475530 | None:intergenic |
| AAATTGTATTTAGACTATGA+GGG | 0.617847 | 3.2:+82480875 | MS.gene055505:CDS |
| CTGTATATGAAGCTTGTCGT+CGG | 0.618257 | 3.2:+82474307 | MS.gene055505:CDS |
| TTGTGGAATCCTCACAGACA+AGG | 0.623268 | 3.2:+82474383 | MS.gene055505:CDS |
| TGTGGAAGCCCTCCAAAAGA+TGG | 0.623712 | 3.2:+82474623 | MS.gene055505:CDS |
| AAAGGCCTAAGCCAGCAACA+AGG | 0.628281 | 3.2:-82480997 | None:intergenic |
| TCTTCCGACGGCAGACTCAG+AGG | 0.629943 | 3.2:-82473294 | None:intergenic |
| GCATGCGTATTCAGATGCAT+GGG | 0.630040 | 3.2:+82480940 | MS.gene055505:CDS |
| GCTTGCAGAAATATAAGGAA+GGG | 0.630571 | 3.2:-82478204 | None:intergenic |
| TTCAAAATAGGTTCTGATGG+AGG | 0.638390 | 3.2:+82478167 | MS.gene055505:CDS |
| AGTCACACACCTTGTCTGTG+AGG | 0.641672 | 3.2:-82474392 | None:intergenic |
| TGAATGATTGTGGACAGTGA+TGG | 0.643866 | 3.2:-82475086 | None:intergenic |
| GTGGTTGGAAACAGATGGCA+TGG | 0.644034 | 3.2:+82476888 | MS.gene055505:intron |
| ACGAGGTCCTCCTCTTCCGA+CGG | 0.654871 | 3.2:-82473306 | None:intergenic |
| AGAGCCTCTGAGTCTGCCGT+CGG | 0.655585 | 3.2:+82473290 | MS.gene055505:CDS |
| GTCGTCGGATGGCTGCCCGG+AGG | 0.658322 | 3.2:+82474322 | MS.gene055505:CDS |
| GTTCAAGGGATATCTTGATG+CGG | 0.662105 | 3.2:+82475489 | MS.gene055505:intron |
| AGCAACACCACTATATGCTG+AGG | 0.663447 | 3.2:-82480963 | None:intergenic |
| AGATACCCGGAGCATGACGG+AGG | 0.673015 | 3.2:+82480330 | MS.gene055505:intron |
| ACTGTTGATGGCAAACCTCG+AGG | 0.678986 | 3.2:+82475317 | MS.gene055505:CDS |
| CCAAAACCTTTGCATCAAGG+TGG | 0.687299 | 3.2:-82478009 | None:intergenic |
| ACAGGGGTTTAACAGGAGAG+CGG | 0.701289 | 3.2:+82474232 | MS.gene055505:intron |
| GTTCTGATGGAGGAGAAACA+GGG | 0.702384 | 3.2:+82478177 | MS.gene055505:CDS |
| TTTGCCATCAACAGTAACAA+CGG | 0.702915 | 3.2:-82475309 | None:intergenic |
| TTAGACTATGAGGGAACACG+TGG | 0.704208 | 3.2:+82480884 | MS.gene055505:CDS |
| ACTTACGTAACGATGCCTCG+AGG | 0.707769 | 3.2:-82475332 | None:intergenic |
| GCTAAGGAAATTGATTTACG+AGG | 0.717422 | 3.2:-82473323 | None:intergenic |
| AGAATGCATAGATTCACATG+TGG | 0.732493 | 3.2:+82478269 | MS.gene055505:CDS |
| ATGATGACGATGAAACACGA+AGG | 0.733270 | 3.2:+82478060 | MS.gene055505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82473257 | 82481042 | 82473257 | ID=MS.gene055505 |
| chr3.2 | mRNA | 82473257 | 82481042 | 82473257 | ID=MS.gene055505.t1;Parent=MS.gene055505 |
| chr3.2 | exon | 82473257 | 82473354 | 82473257 | ID=MS.gene055505.t1.exon1;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82473257 | 82473354 | 82473257 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82474236 | 82474404 | 82474236 | ID=MS.gene055505.t1.exon2;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82474236 | 82474404 | 82474236 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82474519 | 82474651 | 82474519 | ID=MS.gene055505.t1.exon3;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82474519 | 82474651 | 82474519 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82474739 | 82474909 | 82474739 | ID=MS.gene055505.t1.exon4;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82474739 | 82474909 | 82474739 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82475039 | 82475120 | 82475039 | ID=MS.gene055505.t1.exon5;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82475039 | 82475120 | 82475039 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82475235 | 82475348 | 82475235 | ID=MS.gene055505.t1.exon6;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82475235 | 82475348 | 82475235 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82475490 | 82475556 | 82475490 | ID=MS.gene055505.t1.exon7;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82475490 | 82475556 | 82475490 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82476711 | 82476816 | 82476711 | ID=MS.gene055505.t1.exon8;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82476711 | 82476816 | 82476711 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82476902 | 82476969 | 82476902 | ID=MS.gene055505.t1.exon9;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82476902 | 82476969 | 82476902 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82477987 | 82478081 | 82477987 | ID=MS.gene055505.t1.exon10;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82477987 | 82478081 | 82477987 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82478157 | 82478290 | 82478157 | ID=MS.gene055505.t1.exon11;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82478157 | 82478290 | 82478157 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82480332 | 82480417 | 82480332 | ID=MS.gene055505.t1.exon12;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82480332 | 82480417 | 82480332 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82480512 | 82480601 | 82480512 | ID=MS.gene055505.t1.exon13;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82480512 | 82480601 | 82480512 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| chr3.2 | exon | 82480869 | 82481042 | 82480869 | ID=MS.gene055505.t1.exon14;Parent=MS.gene055505.t1 |
| chr3.2 | CDS | 82480869 | 82481042 | 82480869 | ID=cds.MS.gene055505.t1;Parent=MS.gene055505.t1 |
| Gene Sequence |
| Protein sequence |
