Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32984.t1 | XP_003589017.1 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 8.10E-159 | 569.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32984.t1 | G7IB84 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 5.8e-159 | 569.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene32984 | 0.823184 | 1.59E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene32984 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene32984 | 0.837814 | 4.16E-57 | -1.69E-46 |
| MS.gene054584 | MS.gene32984 | 0.856514 | 3.06E-62 | -1.69E-46 |
| MS.gene055465 | MS.gene32984 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene32984 | 0.803035 | 4.22E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene32984 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene32984 | 0.804596 | 2.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32984.t1 | MTR_1g016410 | 94.771 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 0.0 | 593 |
| MS.gene32984.t1 | MTR_1g016410 | 95.964 | 223 | 9 | 0 | 80 | 302 | 1 | 223 | 5.12e-160 | 445 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32984.t1 | AT5G11810 | 51.746 | 315 | 130 | 5 | 1 | 302 | 1 | 306 | 5.09e-107 | 314 |
Find 73 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCCGAATATAGGTTTA+TGG | 0.144055 | 1.1:+5772431 | MS.gene32984:intron |
| AGGTTTGTTCATCATGAATT+TGG | 0.151777 | 1.1:-5772039 | None:intergenic |
| GGGGATCAAGCTCCATATTT+TGG | 0.200742 | 1.1:-5773880 | None:intergenic |
| GCTATAATGACCAACCATTC+AGG | 0.286488 | 1.1:+5772465 | MS.gene32984:CDS |
| TTCTCCGAATATAGGTTTAT+GGG | 0.317331 | 1.1:+5772432 | MS.gene32984:intron |
| ATGTGGAAAGCTCCAAAATA+TGG | 0.341782 | 1.1:+5773868 | MS.gene32984:CDS |
| GGTTTGTTCATCATGAATTT+GGG | 0.345299 | 1.1:-5772038 | None:intergenic |
| CTTTCAAGAAGGGAAGGTTT+TGG | 0.354580 | 1.1:+5772611 | MS.gene32984:CDS |
| GAAGGAAAACAAGATCAAAT+TGG | 0.378636 | 1.1:-5772641 | None:intergenic |
| GGAACCTGAGGGATTGGAAT+TGG | 0.393143 | 1.1:-5771874 | None:intergenic |
| AACAAACCTCCATGAAATCT+TGG | 0.393667 | 1.1:-5773370 | None:intergenic |
| AACAACACTGAAGCCAAGTT+TGG | 0.396858 | 1.1:-5772505 | None:intergenic |
| AGCCGATCGCTGATTCTATA+CGG | 0.398680 | 1.1:+5771759 | MS.gene32984:CDS |
| GTTGAGATTCTCAAGTTGCT+TGG | 0.420759 | 1.1:+5772588 | MS.gene32984:CDS |
| TATAAAAGAAAATACCTATT+GGG | 0.423891 | 1.1:-5772064 | None:intergenic |
| ATGAACAAACCTTACCCAAT+AGG | 0.429754 | 1.1:+5772050 | MS.gene32984:CDS |
| TAAAAGATTTCAACCCTGAA+TGG | 0.433252 | 1.1:-5772479 | None:intergenic |
| CATGAGCTATGGCAAGGTCT+TGG | 0.441819 | 1.1:+5772800 | MS.gene32984:CDS |
| CTTCTTTGACACTGAAAACC+TGG | 0.441872 | 1.1:-5772835 | None:intergenic |
| GAGAAAGGAACCTGAGGGAT+TGG | 0.460720 | 1.1:-5771880 | None:intergenic |
| TGTTGTTCAGTTGGATGAGT+TGG | 0.461911 | 1.1:+5772521 | MS.gene32984:CDS |
| TGGCTTCAGTGTTGTTCAGT+TGG | 0.463762 | 1.1:+5772512 | MS.gene32984:CDS |
| TTCATAGCATAACTTTGTAA+AGG | 0.471242 | 1.1:-5772894 | None:intergenic |
| AAGAAAATACCTATTGGGTA+AGG | 0.489202 | 1.1:-5772059 | None:intergenic |
| AAGTTGCTTGGCTTTCAAGA+AGG | 0.492708 | 1.1:+5772600 | MS.gene32984:CDS |
| CTATAATGACCAACCATTCA+GGG | 0.494929 | 1.1:+5772466 | MS.gene32984:CDS |
| TCATGTTGGAGCTGGTGAAA+AGG | 0.495408 | 1.1:+5772662 | MS.gene32984:CDS |
| AAATGCTGATGTGGAGTTTG+TGG | 0.495412 | 1.1:+5772701 | MS.gene32984:CDS |
| AATAATGAGACAAGCGCAGC+CGG | 0.495702 | 1.1:+5772740 | MS.gene32984:CDS |
| AAGATGATGGATCGATGAAA+CGG | 0.496428 | 1.1:-5771794 | None:intergenic |
| CTCTCCAATTCCAATCCCTC+AGG | 0.499252 | 1.1:+5771870 | MS.gene32984:CDS |
| GAGCTATGGCAAGGTCTTGG+AGG | 0.504579 | 1.1:+5772803 | MS.gene32984:CDS |
| AGAGAGAAGCGAGGGACTGA+AGG | 0.513107 | 1.1:-5771827 | None:intergenic |
| AGATGATGGATCGATGAAAC+GGG | 0.514429 | 1.1:-5771793 | None:intergenic |
| TCTAACAATTCTATCATCCT+CGG | 0.516946 | 1.1:-5771990 | None:intergenic |
| TGTGGAGTTTGTGGATGCAT+TGG | 0.518144 | 1.1:+5772710 | MS.gene32984:CDS |
| TTACAAAGTTATGCTATGAA+AGG | 0.522292 | 1.1:+5772897 | MS.gene32984:CDS |
| AGTTGCTTGGCTTTCAAGAA+GGG | 0.524482 | 1.1:+5772601 | MS.gene32984:CDS |
| TTGTCTGTTGTCATGAGCTA+TGG | 0.536953 | 1.1:+5772789 | MS.gene32984:CDS |
| TGCAATTGAGCAATTAACAT+TGG | 0.540100 | 1.1:-5773305 | None:intergenic |
| ATCTCACAATACCAGCAGAT+AGG | 0.541333 | 1.1:+5773821 | MS.gene32984:CDS |
| TCTTGGAGGATGATGAGTCC+AGG | 0.545029 | 1.1:+5772817 | MS.gene32984:CDS |
| GAGTTTGTGGATGCATTGGT+TGG | 0.545828 | 1.1:+5772714 | MS.gene32984:CDS |
| TATAGAATCAGCGATCGGCT+TGG | 0.548173 | 1.1:-5771756 | None:intergenic |
| TTTCACCAGCTCCAACATGA+AGG | 0.553634 | 1.1:-5772659 | None:intergenic |
| AGATTTCAACCCTGAATGGT+TGG | 0.554007 | 1.1:-5772475 | None:intergenic |
| CAAAGTTATGCTATGAAAGG+AGG | 0.560618 | 1.1:+5772900 | MS.gene32984:CDS |
| GTCAAAGAAGGTTGACGAGA+AGG | 0.562699 | 1.1:+5772848 | MS.gene32984:CDS |
| GCTTGGCTTTCAAGAAGGGA+AGG | 0.566463 | 1.1:+5772605 | MS.gene32984:CDS |
| TCGTGCAAGAACCTATCTGC+TGG | 0.575055 | 1.1:-5773832 | None:intergenic |
| AATTACCTCACATCCTTGCG+AGG | 0.575548 | 1.1:-5772927 | None:intergenic |
| CGAGAACCAACATCAGATCC+CGG | 0.576985 | 1.1:-5772759 | None:intergenic |
| TTTCTTGTTATGCAGAATGG+TGG | 0.581399 | 1.1:+5773796 | MS.gene32984:intron |
| AGGTTTGTGTGAGAAGATGA+TGG | 0.586742 | 1.1:-5771807 | None:intergenic |
| GCGCAGCCGGGATCTGATGT+TGG | 0.589297 | 1.1:+5772753 | MS.gene32984:CDS |
| AACCTCCATGAAATCTTGGA+AGG | 0.591474 | 1.1:-5773366 | None:intergenic |
| TCGCTGATTCTATACGGCGA+TGG | 0.591978 | 1.1:+5771765 | MS.gene32984:CDS |
| GCAGGAAGAGAGAGAAGCGA+GGG | 0.592568 | 1.1:-5771835 | None:intergenic |
| GGAGAGAGTTAAGAAAGCGC+AGG | 0.593526 | 1.1:-5771853 | None:intergenic |
| ATCACAAGACACTGATATTG+TGG | 0.596048 | 1.1:+5772563 | MS.gene32984:CDS |
| CGCAGGAAGAGAGAGAAGCG+AGG | 0.597385 | 1.1:-5771836 | None:intergenic |
| GCAACATGCTGTGACTCGCA+AGG | 0.610197 | 1.1:+5773325 | MS.gene32984:CDS |
| GAAAGGAGGAGTTCCTCGCA+AGG | 0.612920 | 1.1:+5772914 | MS.gene32984:CDS |
| GAGCAATTAACATTGGCGAA+TGG | 0.619596 | 1.1:-5773298 | None:intergenic |
| CGCCGTATAGAATCAGCGAT+CGG | 0.624581 | 1.1:-5771761 | None:intergenic |
| GAGTTCCTCGCAAGGATGTG+AGG | 0.625381 | 1.1:+5772922 | MS.gene32984:CDS |
| TGTTGTCATGAGCTATGGCA+AGG | 0.631696 | 1.1:+5772794 | MS.gene32984:CDS |
| ATAATGAGACAAGCGCAGCC+GGG | 0.641773 | 1.1:+5772741 | MS.gene32984:CDS |
| TAGTGAACAAAATGCTGATG+TGG | 0.648802 | 1.1:+5772692 | MS.gene32984:CDS |
| TTCCTTCCAAGATTTCATGG+AGG | 0.669194 | 1.1:+5773364 | MS.gene32984:CDS |
| GGAGCTGGTGAAAAGGACAA+TGG | 0.733760 | 1.1:+5772669 | MS.gene32984:CDS |
| CTCGCAAGGATAATGTACAG+AGG | 0.741638 | 1.1:+5773339 | MS.gene32984:CDS |
| ACTTTGTAAAGGATACAGTG+TGG | 0.743894 | 1.1:-5772883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAGAAAATACCTAT+TGG | - | chr1.1:5772068-5772087 | None:intergenic | 15.0% |
| !! | TATAAAAGAAAATACCTATT+GGG | - | chr1.1:5772067-5772086 | None:intergenic | 15.0% |
| !!! | TTTAGTTTTAAAGATTAATG+AGG | + | chr1.1:5773688-5773707 | MS.gene32984:intron | 15.0% |
| !! | AATTGATTAAGAAAGAAATG+TGG | - | chr1.1:5771926-5771945 | None:intergenic | 20.0% |
| !! | ATATGACAATAATCAATTGT+TGG | + | chr1.1:5772187-5772206 | MS.gene32984:intron | 20.0% |
| !! | ATTGATTAAGAAAGAAATGT+GGG | - | chr1.1:5771925-5771944 | None:intergenic | 20.0% |
| !! | TAAGAAAAAGATACAGAATA+GGG | - | chr1.1:5773475-5773494 | None:intergenic | 20.0% |
| !! | TTAAGAAAAAGATACAGAAT+AGG | - | chr1.1:5773476-5773495 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGATGATTTTGAT+TGG | - | chr1.1:5772145-5772164 | None:intergenic | 20.0% |
| ! | AATATTCACCAAACATGAAA+CGG | - | chr1.1:5773007-5773026 | None:intergenic | 25.0% |
| ! | ACAATAATCAATTGTTGGAT+TGG | + | chr1.1:5772192-5772211 | MS.gene32984:intron | 25.0% |
| ! | ATCAATTGTATGTGGTATAT+TGG | - | chr1.1:5773575-5773594 | None:intergenic | 25.0% |
| ! | ATCCAAAAAGAAATAAAGCA+AGG | - | chr1.1:5773239-5773258 | None:intergenic | 25.0% |
| ! | ATTAAAAAGAGAAGAGAGAA+AGG | - | chr1.1:5771898-5771917 | None:intergenic | 25.0% |
| ! | TTACAAAGTTATGCTATGAA+AGG | + | chr1.1:5772897-5772916 | MS.gene32984:CDS | 25.0% |
| ! | TTCATAGCATAACTTTGTAA+AGG | - | chr1.1:5772897-5772916 | None:intergenic | 25.0% |
| ! | TTGGTCAATAATTTGGAAAT+AGG | - | chr1.1:5773527-5773546 | None:intergenic | 25.0% |
| ! | TTTGGTAGATAGGTTATAAT+GGG | + | chr1.1:5772960-5772979 | MS.gene32984:intron | 25.0% |
| !! | AAATCTTTTAGTACCAAACT+TGG | + | chr1.1:5772492-5772511 | MS.gene32984:CDS | 25.0% |
| !! | TTTTGGTAGATAGGTTATAA+TGG | + | chr1.1:5772959-5772978 | MS.gene32984:intron | 25.0% |
| !!! | AAAACGAAGAAGTATTTTAC+AGG | + | chr1.1:5772299-5772318 | MS.gene32984:intron | 25.0% |
| !!! | AAACGAAGAAGTATTTTACA+GGG | + | chr1.1:5772300-5772319 | MS.gene32984:intron | 25.0% |
| !!! | ATCCTTGCTTTATTTCTTTT+TGG | + | chr1.1:5773234-5773253 | MS.gene32984:intron | 25.0% |
| AAGAAAATACCTATTGGGTA+AGG | - | chr1.1:5772062-5772081 | None:intergenic | 30.0% | |
| AGATGATTGAAAAAACTGAG+TGG | + | chr1.1:5773057-5773076 | MS.gene32984:intron | 30.0% | |
| ATGGGATAAAACTGAACATA+TGG | + | chr1.1:5772978-5772997 | MS.gene32984:intron | 30.0% | |
| CATCTTGTTGGTCAATAATT+TGG | - | chr1.1:5773534-5773553 | None:intergenic | 30.0% | |
| CATTAATTGCACTTTGTGTT+TGG | - | chr1.1:5773199-5773218 | None:intergenic | 30.0% | |
| CATTCCCATAAACCTATATT+CGG | - | chr1.1:5772439-5772458 | None:intergenic | 30.0% | |
| CATTCTGCATAACAAGAAAA+AGG | - | chr1.1:5773795-5773814 | None:intergenic | 30.0% | |
| CTTACAGAATCAATTGTATG+TGG | - | chr1.1:5773583-5773602 | None:intergenic | 30.0% | |
| GAAGGAAAACAAGATCAAAT+TGG | - | chr1.1:5772644-5772663 | None:intergenic | 30.0% | |
| TAAAAGATTTCAACCCTGAA+TGG | - | chr1.1:5772482-5772501 | None:intergenic | 30.0% | |
| TCTAACAATTCTATCATCCT+CGG | - | chr1.1:5771993-5772012 | None:intergenic | 30.0% | |
| TGCAATTGAGCAATTAACAT+TGG | - | chr1.1:5773308-5773327 | None:intergenic | 30.0% | |
| TTACAGGGTTAAAGTGTAAT+GGG | + | chr1.1:5772315-5772334 | MS.gene32984:intron | 30.0% | |
| TTCTCCGAATATAGGTTTAT+GGG | + | chr1.1:5772432-5772451 | MS.gene32984:intron | 30.0% | |
| TTTACAGGGTTAAAGTGTAA+TGG | + | chr1.1:5772314-5772333 | MS.gene32984:intron | 30.0% | |
| TTTCTCCGAATATAGGTTTA+TGG | + | chr1.1:5772431-5772450 | MS.gene32984:intron | 30.0% | |
| ! | ACACAGGTATATGTTTTCTT+TGG | - | chr1.1:5773112-5773131 | None:intergenic | 30.0% |
| ! | ACATTTTCAGTGGAATCAAA+AGG | - | chr1.1:5773085-5773104 | None:intergenic | 30.0% |
| ! | AGGTTTGTTCATCATGAATT+TGG | - | chr1.1:5772042-5772061 | None:intergenic | 30.0% |
| ! | CACAGGTATATGTTTTCTTT+GGG | - | chr1.1:5773111-5773130 | None:intergenic | 30.0% |
| ! | GGTTTGTTCATCATGAATTT+GGG | - | chr1.1:5772041-5772060 | None:intergenic | 30.0% |
| ! | TGTTGTGTATCAAACACTTT+TGG | + | chr1.1:5773129-5773148 | MS.gene32984:intron | 30.0% |
| ! | TTATTGTAAGGCATCATTGT+TGG | + | chr1.1:5773612-5773631 | MS.gene32984:intron | 30.0% |
| !! | CTTTTTCTTGTTATGCAGAA+TGG | + | chr1.1:5773793-5773812 | MS.gene32984:intron | 30.0% |
| !! | TACTTCTTCGTTTTTAAACG+AGG | - | chr1.1:5772293-5772312 | None:intergenic | 30.0% |
| !! | TTTTGATTCCACTGAAAATG+TGG | + | chr1.1:5773084-5773103 | MS.gene32984:intron | 30.0% |
| !!! | AGGTAATTTAAGCTAGCTTT+TGG | + | chr1.1:5772942-5772961 | MS.gene32984:intron | 30.0% |
| !!! | TGATGATTTTGATTGGATGA+CGG | - | chr1.1:5772138-5772157 | None:intergenic | 30.0% |
| !!! | TGTAATGGGTACGATATTTT+AGG | + | chr1.1:5772329-5772348 | MS.gene32984:intron | 30.0% |
| AAAGGAAACATGTAAAGCGA+AGG | - | chr1.1:5773777-5773796 | None:intergenic | 35.0% | |
| AACAAACCTCCATGAAATCT+TGG | - | chr1.1:5773373-5773392 | None:intergenic | 35.0% | |
| AAGCGTTTGCAGTTATTGTA+AGG | + | chr1.1:5773600-5773619 | MS.gene32984:intron | 35.0% | |
| AAGTGTTTGATACACAACAC+AGG | - | chr1.1:5773128-5773147 | None:intergenic | 35.0% | |
| ACTCTTGTCTGAGTTACTAT+TGG | + | chr1.1:5772252-5772271 | MS.gene32984:intron | 35.0% | |
| ACTTAACAAGCCAAACACTA+GGG | - | chr1.1:5773724-5773743 | None:intergenic | 35.0% | |
| ACTTTGTAAAGGATACAGTG+TGG | - | chr1.1:5772886-5772905 | None:intergenic | 35.0% | |
| ATCACAAGACACTGATATTG+TGG | + | chr1.1:5772563-5772582 | MS.gene32984:CDS | 35.0% | |
| ATGAACAAACCTTACCCAAT+AGG | + | chr1.1:5772050-5772069 | MS.gene32984:CDS | 35.0% | |
| ATGTGGAAAGCTCCAAAATA+TGG | + | chr1.1:5773868-5773887 | MS.gene32984:CDS | 35.0% | |
| CAAAGTTATGCTATGAAAGG+AGG | + | chr1.1:5772900-5772919 | MS.gene32984:CDS | 35.0% | |
| CTATAATGACCAACCATTCA+GGG | + | chr1.1:5772466-5772485 | MS.gene32984:CDS | 35.0% | |
| CTTAGAATTTCCCTAGTGTT+TGG | + | chr1.1:5773711-5773730 | MS.gene32984:intron | 35.0% | |
| GCGAAGGAATAATACAGTAA+TGG | - | chr1.1:5773761-5773780 | None:intergenic | 35.0% | |
| TAGTGAACAAAATGCTGATG+TGG | + | chr1.1:5772692-5772711 | MS.gene32984:CDS | 35.0% | |
| TATGGTTTCCGTTTCATGTT+TGG | + | chr1.1:5772996-5773015 | MS.gene32984:intron | 35.0% | |
| ! | GCATTCTTTTCTCCGAATAT+AGG | + | chr1.1:5772424-5772443 | MS.gene32984:intron | 35.0% |
| ! | GGAAATAGGTTTAAAGCGAA+TGG | - | chr1.1:5773513-5773532 | None:intergenic | 35.0% |
| ! | GTTTTCCTTCCAAGATTTCA+TGG | + | chr1.1:5773361-5773380 | MS.gene32984:CDS | 35.0% |
| ! | TATGTAGTTTTCAGAAACCG+AGG | + | chr1.1:5771973-5771992 | MS.gene32984:intron | 35.0% |
| ! | TTTCTTGTTATGCAGAATGG+TGG | + | chr1.1:5773796-5773815 | MS.gene32984:intron | 35.0% |
| !! | AAGATGATGGATCGATGAAA+CGG | - | chr1.1:5771797-5771816 | None:intergenic | 35.0% |
| !! | TCTTCGTTTTTAAACGAGGA+GGG | - | chr1.1:5772289-5772308 | None:intergenic | 35.0% |
| !! | TTCTTCGTTTTTAAACGAGG+AGG | - | chr1.1:5772290-5772309 | None:intergenic | 35.0% |
| !! | TTTGATTTTTGCTTTGCTGC+AGG | + | chr1.1:5773436-5773455 | MS.gene32984:intron | 35.0% |
| !!! | ACGAGATAGCTTTTAAGATG+TGG | + | chr1.1:5773851-5773870 | MS.gene32984:CDS | 35.0% |
| !!! | GATCTTGTTTTCCTTCATGT+TGG | + | chr1.1:5772648-5772667 | MS.gene32984:CDS | 35.0% |
| !!! | TAAGCTAGCTTTTGGTAGAT+AGG | + | chr1.1:5772950-5772969 | MS.gene32984:intron | 35.0% |
| AAATGCTGATGTGGAGTTTG+TGG | + | chr1.1:5772701-5772720 | MS.gene32984:CDS | 40.0% | |
| AACAACACTGAAGCCAAGTT+TGG | - | chr1.1:5772508-5772527 | None:intergenic | 40.0% | |
| AACCTCCATGAAATCTTGGA+AGG | - | chr1.1:5773369-5773388 | None:intergenic | 40.0% | |
| AGATTTCAACCCTGAATGGT+TGG | - | chr1.1:5772478-5772497 | None:intergenic | 40.0% | |
| AGGTTTGTGTGAGAAGATGA+TGG | - | chr1.1:5771810-5771829 | None:intergenic | 40.0% | |
| ATCTCACAATACCAGCAGAT+AGG | + | chr1.1:5773821-5773840 | MS.gene32984:CDS | 40.0% | |
| CACTTAACAAGCCAAACACT+AGG | - | chr1.1:5773725-5773744 | None:intergenic | 40.0% | |
| CTTCTTTGACACTGAAAACC+TGG | - | chr1.1:5772838-5772857 | None:intergenic | 40.0% | |
| GAGCAATTAACATTGGCGAA+TGG | - | chr1.1:5773301-5773320 | None:intergenic | 40.0% | |
| GCTATAATGACCAACCATTC+AGG | + | chr1.1:5772465-5772484 | MS.gene32984:CDS | 40.0% | |
| TGTTGTTCAGTTGGATGAGT+TGG | + | chr1.1:5772521-5772540 | MS.gene32984:CDS | 40.0% | |
| TTCCTTCCAAGATTTCATGG+AGG | + | chr1.1:5773364-5773383 | MS.gene32984:CDS | 40.0% | |
| TTGTCTGTTGTCATGAGCTA+TGG | + | chr1.1:5772789-5772808 | MS.gene32984:CDS | 40.0% | |
| ! | AAGTTGCTTGGCTTTCAAGA+AGG | + | chr1.1:5772600-5772619 | MS.gene32984:CDS | 40.0% |
| ! | AGTTGCTTGGCTTTCAAGAA+GGG | + | chr1.1:5772601-5772620 | MS.gene32984:CDS | 40.0% |
| ! | CAGGTTTTCAGTGTCAAAGA+AGG | + | chr1.1:5772836-5772855 | MS.gene32984:CDS | 40.0% |
| ! | CTTTCAAGAAGGGAAGGTTT+TGG | + | chr1.1:5772611-5772630 | MS.gene32984:CDS | 40.0% |
| ! | GTTGAGATTCTCAAGTTGCT+TGG | + | chr1.1:5772588-5772607 | MS.gene32984:CDS | 40.0% |
| !! | AGATGATGGATCGATGAAAC+GGG | - | chr1.1:5771796-5771815 | None:intergenic | 40.0% |
| AATAATGAGACAAGCGCAGC+CGG | + | chr1.1:5772740-5772759 | MS.gene32984:CDS | 45.0% | |
| AATTACCTCACATCCTTGCG+AGG | - | chr1.1:5772930-5772949 | None:intergenic | 45.0% | |
| ACCTCCATACCAAATGATGC+AGG | + | chr1.1:5773273-5773292 | MS.gene32984:intron | 45.0% | |
| AGAAGAGAGAAAGGAACCTG+AGG | - | chr1.1:5771889-5771908 | None:intergenic | 45.0% | |
| CAACAAGATGTGTGCTTGAG+TGG | + | chr1.1:5773544-5773563 | MS.gene32984:intron | 45.0% | |
| CACTCAAGCACACATCTTGT+TGG | - | chr1.1:5773546-5773565 | None:intergenic | 45.0% | |
| CAGAATAGGGCCTCGTAATA+AGG | - | chr1.1:5773462-5773481 | None:intergenic | 45.0% | |
| CTCGCAAGGATAATGTACAG+AGG | + | chr1.1:5773339-5773358 | MS.gene32984:CDS | 45.0% | |
| GAAGAGAGAAAGGAACCTGA+GGG | - | chr1.1:5771888-5771907 | None:intergenic | 45.0% | |
| GTCAAAGAAGGTTGACGAGA+AGG | + | chr1.1:5772848-5772867 | MS.gene32984:CDS | 45.0% | |
| TATAGAATCAGCGATCGGCT+TGG | - | chr1.1:5771759-5771778 | None:intergenic | 45.0% | |
| TCATGTTGGAGCTGGTGAAA+AGG | + | chr1.1:5772662-5772681 | MS.gene32984:CDS | 45.0% | |
| TGTGGAGTTTGTGGATGCAT+TGG | + | chr1.1:5772710-5772729 | MS.gene32984:CDS | 45.0% | |
| TGTTGTCATGAGCTATGGCA+AGG | + | chr1.1:5772794-5772813 | MS.gene32984:CDS | 45.0% | |
| TTTCACCAGCTCCAACATGA+AGG | - | chr1.1:5772662-5772681 | None:intergenic | 45.0% | |
| ! | CTTTGGGTCCACATTTTCAG+TGG | - | chr1.1:5773095-5773114 | None:intergenic | 45.0% |
| ! | GAGTTTGTGGATGCATTGGT+TGG | + | chr1.1:5772714-5772733 | MS.gene32984:CDS | 45.0% |
| ! | GTTTTCCTTCATGTTGGAGC+TGG | + | chr1.1:5772654-5772673 | MS.gene32984:CDS | 45.0% |
| ! | TGGCTTCAGTGTTGTTCAGT+TGG | + | chr1.1:5772512-5772531 | MS.gene32984:CDS | 45.0% |
| !! | AGCCGATCGCTGATTCTATA+CGG | + | chr1.1:5771759-5771778 | MS.gene32984:CDS | 45.0% |
| ATAATGAGACAAGCGCAGCC+GGG | + | chr1.1:5772741-5772760 | MS.gene32984:CDS | 50.0% | |
| CATGAGCTATGGCAAGGTCT+TGG | + | chr1.1:5772800-5772819 | MS.gene32984:CDS | 50.0% | |
| CGAATGGTGCCTGCATCATT+TGG | - | chr1.1:5773285-5773304 | None:intergenic | 50.0% | |
| CGAGAACCAACATCAGATCC+CGG | - | chr1.1:5772762-5772781 | None:intergenic | 50.0% | |
| CGCCGTATAGAATCAGCGAT+CGG | - | chr1.1:5771764-5771783 | None:intergenic | 50.0% | |
| CTCTCCAATTCCAATCCCTC+AGG | + | chr1.1:5771870-5771889 | MS.gene32984:CDS | 50.0% | |
| GAGAAAGGAACCTGAGGGAT+TGG | - | chr1.1:5771883-5771902 | None:intergenic | 50.0% | |
| GCCTGCATCATTTGGTATGG+AGG | - | chr1.1:5773277-5773296 | None:intergenic | 50.0% | |
| GGAACCTGAGGGATTGGAAT+TGG | - | chr1.1:5771877-5771896 | None:intergenic | 50.0% | |
| GGAGCTGGTGAAAAGGACAA+TGG | + | chr1.1:5772669-5772688 | MS.gene32984:CDS | 50.0% | |
| GGTGCCTGCATCATTTGGTA+TGG | - | chr1.1:5773280-5773299 | None:intergenic | 50.0% | |
| TCGTGCAAGAACCTATCTGC+TGG | - | chr1.1:5773835-5773854 | None:intergenic | 50.0% | |
| TCTTGGAGGATGATGAGTCC+AGG | + | chr1.1:5772817-5772836 | MS.gene32984:CDS | 50.0% | |
| ! | GCTTGGCTTTCAAGAAGGGA+AGG | + | chr1.1:5772605-5772624 | MS.gene32984:CDS | 50.0% |
| ! | GGAGAGAGTTAAGAAAGCGC+AGG | - | chr1.1:5771856-5771875 | None:intergenic | 50.0% |
| !! | TCGCTGATTCTATACGGCGA+TGG | + | chr1.1:5771765-5771784 | MS.gene32984:CDS | 50.0% |
| !! | TTGCTGCAGGCCTTATTACG+AGG | + | chr1.1:5773449-5773468 | MS.gene32984:intron | 50.0% |
| AGAGAGAAGCGAGGGACTGA+AGG | - | chr1.1:5771830-5771849 | None:intergenic | 55.0% | |
| GAAAGGAGGAGTTCCTCGCA+AGG | + | chr1.1:5772914-5772933 | MS.gene32984:CDS | 55.0% | |
| GAGCTATGGCAAGGTCTTGG+AGG | + | chr1.1:5772803-5772822 | MS.gene32984:CDS | 55.0% | |
| GAGTTCCTCGCAAGGATGTG+AGG | + | chr1.1:5772922-5772941 | MS.gene32984:CDS | 55.0% | |
| GCAACATGCTGTGACTCGCA+AGG | + | chr1.1:5773325-5773344 | MS.gene32984:CDS | 55.0% | |
| GCAGGAAGAGAGAGAAGCGA+GGG | - | chr1.1:5771838-5771857 | None:intergenic | 55.0% | |
| ! | CACTTTTGGCGTGACTCGCA+AGG | + | chr1.1:5773143-5773162 | MS.gene32984:intron | 55.0% |
| CGCAGGAAGAGAGAGAAGCG+AGG | - | chr1.1:5771839-5771858 | None:intergenic | 60.0% | |
| GCGCAGCCGGGATCTGATGT+TGG | + | chr1.1:5772753-5772772 | MS.gene32984:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5771744 | 5773897 | 5771744 | ID=MS.gene32984 |
| chr1.1 | mRNA | 5771744 | 5773897 | 5771744 | ID=MS.gene32984.t1;Parent=MS.gene32984 |
| chr1.1 | exon | 5771744 | 5771891 | 5771744 | ID=MS.gene32984.t1.exon1;Parent=MS.gene32984.t1 |
| chr1.1 | CDS | 5771744 | 5771891 | 5771744 | ID=cds.MS.gene32984.t1;Parent=MS.gene32984.t1 |
| chr1.1 | exon | 5771987 | 5772071 | 5771987 | ID=MS.gene32984.t1.exon2;Parent=MS.gene32984.t1 |
| chr1.1 | CDS | 5771987 | 5772071 | 5771987 | ID=cds.MS.gene32984.t1;Parent=MS.gene32984.t1 |
| chr1.1 | exon | 5772446 | 5772943 | 5772446 | ID=MS.gene32984.t1.exon3;Parent=MS.gene32984.t1 |
| chr1.1 | CDS | 5772446 | 5772943 | 5772446 | ID=cds.MS.gene32984.t1;Parent=MS.gene32984.t1 |
| chr1.1 | exon | 5773295 | 5773385 | 5773295 | ID=MS.gene32984.t1.exon4;Parent=MS.gene32984.t1 |
| chr1.1 | CDS | 5773295 | 5773385 | 5773295 | ID=cds.MS.gene32984.t1;Parent=MS.gene32984.t1 |
| chr1.1 | exon | 5773811 | 5773897 | 5773811 | ID=MS.gene32984.t1.exon5;Parent=MS.gene32984.t1 |
| chr1.1 | CDS | 5773811 | 5773897 | 5773811 | ID=cds.MS.gene32984.t1;Parent=MS.gene32984.t1 |
| Gene Sequence |
| Protein sequence |
