AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055890.t1 MTR_8g468210 100.000 282 0 0 1 282 1 282 0.0 586
MS.gene055890.t1 MTR_5g039000 81.818 286 42 6 1 282 4 283 1.68e-150 422
MS.gene055890.t1 MTR_6g011610 50.498 301 98 10 1 279 1 272 2.14e-84 254
MS.gene055890.t1 MTR_7g010020 52.465 284 113 9 1 275 1 271 5.01e-82 248
MS.gene055890.t1 MTR_6g011610 48.070 285 110 8 1 279 1 253 2.18e-75 231
MS.gene055890.t1 MTR_6g007647 64.948 97 34 0 76 172 32 128 2.72e-39 138
MS.gene055890.t1 MTR_3g086790 51.656 151 60 4 33 180 26 166 5.99e-39 138
MS.gene055890.t1 MTR_6g007647 64.948 97 34 0 76 172 66 162 8.36e-39 137
MS.gene055890.t1 MTR_3g080100 49.689 161 62 3 64 213 7 159 8.37e-38 133
MS.gene055890.t1 MTR_3g080100 49.689 161 62 3 64 213 46 198 1.32e-37 134
MS.gene055890.t1 MTR_5g038280 66.667 96 32 0 77 172 87 182 6.07e-37 134
MS.gene055890.t1 MTR_4g107650 58.475 118 46 2 52 169 73 187 1.21e-36 133
MS.gene055890.t1 MTR_8g089895 62.245 98 37 0 75 172 52 149 2.80e-36 132
MS.gene055890.t1 MTR_8g469430 65.625 96 33 0 77 172 89 184 4.74e-36 130
MS.gene055890.t1 MTR_7g103340 45.652 138 59 2 44 172 21 151 7.43e-33 120
MS.gene055890.t1 MTR_1g061660 52.830 106 41 2 65 170 49 145 8.73e-28 107
MS.gene055890.t1 MTR_3g092150 53.846 91 42 0 79 169 40 130 5.00e-27 105
MS.gene055890.t1 MTR_8g026960 38.000 150 82 3 84 222 41 190 6.00e-25 100
MS.gene055890.t1 MTR_4g100550 40.496 121 69 1 43 163 89 206 7.67e-21 90.1
MS.gene055890.t1 MTR_5g019650 46.809 94 50 0 77 170 53 146 2.97e-19 84.3
MS.gene055890.t1 MTR_5g019680 47.778 90 47 0 77 166 53 142 3.03e-19 84.0
MS.gene055890.t1 MTR_5g013010 41.463 123 70 2 43 163 100 222 9.19e-19 84.3
MS.gene055890.t1 MTR_4g097600 45.263 95 52 0 69 163 119 213 1.07e-18 84.0
MS.gene055890.t1 MTR_7g093430 46.939 98 48 1 77 174 160 253 4.26e-18 82.8
MS.gene055890.t1 MTR_5g014890 44.000 100 56 0 69 168 115 214 4.84e-18 82.0
MS.gene055890.t1 MTR_1g054285 42.609 115 62 1 60 174 137 247 5.62e-18 82.4
MS.gene055890.t1 MTR_2g061030 39.669 121 69 1 54 174 177 293 2.13e-17 81.3
MS.gene055890.t1 MTR_8g006705 46.739 92 49 0 77 168 146 237 2.95e-17 80.5
MS.gene055890.t1 MTR_4g126900 45.882 85 46 0 80 164 91 175 7.85e-17 77.8
MS.gene055890.t1 MTR_1g017090 45.455 88 48 0 77 164 130 217 1.43e-16 78.2
MS.gene055890.t1 MTR_4g084750 43.434 99 52 1 77 175 65 159 3.12e-15 72.8
MS.gene055890.t1 MTR_3g103590 48.611 72 37 0 77 148 145 216 5.54e-14 71.2
MS.gene055890.t1 MTR_5g013010 43.182 88 48 2 43 128 100 187 2.72e-12 65.1
MS.gene055890.t1 MTR_2g038625 37.615 109 64 2 59 163 60 168 1.22e-11 63.2
MS.gene055890.t1 MTR_2g038580 37.615 109 64 2 59 163 60 168 1.22e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055890.t1 AT1G69780 64.189 296 84 8 1 282 7 294 8.25e-120 345
MS.gene055890.t1 AT1G26960 55.363 289 81 9 1 282 8 255 5.04e-95 281
MS.gene055890.t1 AT3G01220 48.057 283 114 9 1 275 16 273 1.03e-74 230
MS.gene055890.t1 AT5G15150 44.300 307 111 11 1 275 22 300 1.42e-71 223
MS.gene055890.t1 AT4G40060 57.576 132 52 2 59 186 39 170 4.58e-40 141
MS.gene055890.t1 AT5G65310 48.824 170 70 4 52 206 19 186 7.30e-40 140
MS.gene055890.t1 AT5G65310 48.824 170 70 4 52 206 37 204 8.46e-40 141
MS.gene055890.t1 AT3G01470 48.052 154 65 1 34 172 10 163 5.89e-39 137
MS.gene055890.t1 AT2G22430 66.667 99 33 0 74 172 59 157 8.39e-39 138
MS.gene055890.t1 AT1G27045 40.306 196 94 5 8 195 12 192 2.56e-31 116
MS.gene055890.t1 AT1G27045 42.857 161 75 4 8 166 12 157 1.60e-29 112
MS.gene055890.t1 AT1G27045 48.800 125 58 1 77 195 17 141 3.92e-28 107
MS.gene055890.t1 AT1G27045 48.800 125 58 1 77 195 25 149 4.49e-28 107
MS.gene055890.t1 AT1G27045 48.800 125 58 1 77 195 25 149 4.49e-28 107
MS.gene055890.t1 AT2G46680 52.688 93 44 0 78 170 33 125 8.07e-28 108
MS.gene055890.t1 AT2G46680 53.333 90 42 0 78 167 33 122 4.46e-27 106
MS.gene055890.t1 AT3G61890 51.111 90 44 0 80 169 33 122 1.25e-25 102
MS.gene055890.t1 AT5G03790 52.273 88 42 0 77 164 77 164 1.55e-24 99.0
MS.gene055890.t1 AT5G03790 55.000 80 36 0 77 156 77 156 1.46e-23 95.5
MS.gene055890.t1 AT2G18550 46.341 123 56 3 77 196 61 176 1.61e-22 93.2
MS.gene055890.t1 AT2G36610 43.590 117 51 3 58 166 59 168 1.91e-22 92.0
MS.gene055890.t1 AT4G36740 48.544 103 46 1 68 170 46 141 6.84e-22 91.3
MS.gene055890.t1 AT4G36740 48.544 103 46 1 68 170 47 142 7.35e-22 91.3
MS.gene055890.t1 AT5G66700 45.378 119 56 2 61 172 57 173 3.34e-21 89.7
MS.gene055890.t1 AT5G53980 44.554 101 56 0 72 172 6 106 1.02e-20 86.7
MS.gene055890.t1 AT2G01430 43.396 106 60 0 58 163 120 225 4.93e-18 82.0
MS.gene055890.t1 AT5G47370 42.708 96 55 0 69 164 122 217 2.22e-17 80.5
MS.gene055890.t1 AT4G37790 41.228 114 63 1 61 174 110 219 3.81e-17 79.7
MS.gene055890.t1 AT2G22800 46.667 90 48 0 75 164 111 200 4.86e-17 79.3
MS.gene055890.t1 AT5G06710 43.434 99 56 0 66 164 179 277 8.08e-17 79.7
MS.gene055890.t1 AT4G17460 41.414 99 58 0 65 163 123 221 1.16e-16 78.6
MS.gene055890.t1 AT3G60390 42.991 107 57 1 64 170 149 251 1.59e-16 78.6
MS.gene055890.t1 AT2G44910 44.681 94 48 1 77 170 163 252 5.20e-15 74.3
MS.gene055890.t1 AT4G16780 42.157 102 55 1 69 170 121 218 8.78e-15 73.2
MS.gene055890.t1 AT1G70920 37.903 124 69 2 57 180 50 165 9.40e-15 71.6
MS.gene055890.t1 AT1G70920 37.903 124 69 2 57 180 20 135 1.69e-14 70.5
MS.gene055890.t1 AT2G01430 50.704 71 35 0 59 129 121 191 2.52e-13 67.8

Find 47 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCTGTTTCTTTATTA+AGG 0.139873 8.3:-42307206 None:intergenic
CATAGATCTCTTTCCTAAAA+AGG 0.254932 8.3:-42306162 None:intergenic
CTGAATGTCTTGTCTTGAAT+TGG 0.288821 8.3:-42307385 None:intergenic
AAGACAATATGATACTATTA+AGG 0.363112 8.3:+42306460 MS.gene055890:CDS
GTTTGTAGCATGAAATTTGC+TGG 0.365160 8.3:-42305828 None:intergenic
AACCAAGACAGATTGCTATA+TGG 0.383913 8.3:+42306375 MS.gene055890:CDS
TCCGATGATGGATCGCAGTT+AGG 0.391738 8.3:+42306236 MS.gene055890:CDS
GTCTTGAAGAAGATGGAAAT+AGG 0.399749 8.3:-42307332 None:intergenic
CCGATGATGGATCGCAGTTA+GGG 0.414857 8.3:+42306237 MS.gene055890:CDS
ATGCAGCTAGCAAGGGCTCT+TGG 0.429987 8.3:+42306347 MS.gene055890:CDS
TGGATGATCAATCTGGACTA+TGG 0.444127 8.3:+42307466 MS.gene055890:CDS
CCATCTTCTTCAAGACCAGC+AGG 0.460199 8.3:+42307339 MS.gene055890:CDS
CTTGTCTGTTGAGTAGATAA+AGG 0.476490 8.3:-42307303 None:intergenic
AGCTGATGAGGAACTCCTGC+TGG 0.491266 8.3:-42307354 None:intergenic
TGTGCCATGGATGATCAATC+TGG 0.494499 8.3:+42307459 MS.gene055890:CDS
CCCTAACTGCGATCCATCAT+CGG 0.502143 8.3:-42306237 None:intergenic
CTATATGGTTTCAAAACAGA+AGG 0.506981 8.3:+42306390 MS.gene055890:CDS
ATAATTGAGTTGAGTGAAGG+TGG 0.507171 8.3:-42305879 None:intergenic
CCTGCTGGTCTTGAAGAAGA+TGG 0.521993 8.3:-42307339 None:intergenic
ATCTGGACTATGGCCATGGT+TGG 0.522424 8.3:+42307476 MS.gene055890:CDS
AACCATATAGCAATCTGTCT+TGG 0.526039 8.3:-42306377 None:intergenic
AGAGGAAAATGCAGCTAGCA+AGG 0.526858 8.3:+42306339 MS.gene055890:CDS
TTAAGGTTGATTGATTCAGT+TGG 0.542418 8.3:-42307189 None:intergenic
GAGGAAGAATTATCCGATGA+TGG 0.563562 8.3:+42306224 MS.gene055890:CDS
GGTTTCAAAACAGAAGGGCT+AGG 0.568856 8.3:+42306396 MS.gene055890:CDS
TAGTCCAGATTGATCATCCA+TGG 0.576768 8.3:-42307463 None:intergenic
GTGTCAAAAGATTGATCACA+TGG 0.589732 8.3:+42307407 MS.gene055890:CDS
TTGGTTTGAAAGAGCTGATG+AGG 0.592238 8.3:-42307366 None:intergenic
AACCTTAATAAAGAAACAGA+AGG 0.601474 8.3:+42307204 MS.gene055890:CDS
GTTATAATTGAGTTGAGTGA+AGG 0.601931 8.3:-42305882 None:intergenic
GAAGAAGAGAAGGCTTAACA+TGG 0.612268 8.3:+42306262 MS.gene055890:CDS
ATCAATCTGGACTATGGCCA+TGG 0.615676 8.3:+42307472 MS.gene055890:CDS
AGTTAGGGGAGAAGAAGAGA+AGG 0.616244 8.3:+42306252 MS.gene055890:CDS
ATTGAGTTGAGTGAAGGTGG+AGG 0.620969 8.3:-42305876 None:intergenic
AAACAGTTCAGATATCAAGC+TGG 0.622724 8.3:+42307248 MS.gene055890:CDS
TAGGTGGAAGACAAAACAGT+TGG 0.622940 8.3:+42306415 MS.gene055890:CDS
TATATGGTTTCAAAACAGAA+GGG 0.626685 8.3:+42306391 MS.gene055890:CDS
GAGGAAAATGCAGCTAGCAA+GGG 0.631443 8.3:+42306340 MS.gene055890:CDS
AAGTGCTGTTGCTCCAACCA+TGG 0.633621 8.3:-42307489 None:intergenic
GTAATCTTGAGGAGCACATG+AGG 0.640517 8.3:-42305904 None:intergenic
CGATGATGGATCGCAGTTAG+GGG 0.649440 8.3:+42306238 MS.gene055890:CDS
AAAGTACCATGGTAATCTTG+AGG 0.650196 8.3:-42305915 None:intergenic
GAAACAAGCTTGAACCTGAG+AGG 0.652955 8.3:+42306321 MS.gene055890:CDS
TGGAGAAGAAGCTAATGTCG+AGG 0.659865 8.3:+42306205 MS.gene055890:CDS
TTCAAAACAGAAGGGCTAGG+TGG 0.663747 8.3:+42306399 MS.gene055890:CDS
TGTGCTCCTCAAGATTACCA+TGG 0.687683 8.3:+42305909 MS.gene055890:CDS
TCAAGCTGGATATTTCAACA+AGG 0.727961 8.3:+42307262 MS.gene055890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCTTTTTATATTCAAA+AGG - chr8.3:42306878-42306897 None:intergenic 10.0%
!! TTATAAAAGTTATCATTAGT+TGG - chr8.3:42306943-42306962 None:intergenic 15.0%
!!! AAAAAAAAGCTTTTTACTTA+TGG + chr8.3:42307096-42307115 MS.gene055890:intron 15.0%
!!! TTAATTTTTTTACCAAAATG+AGG - chr8.3:42307035-42307054 None:intergenic 15.0%
!! AAATTGATGAAAGGAAATAA+AGG - chr8.3:42306918-42306937 None:intergenic 20.0%
!! AAGACAATATGATACTATTA+AGG + chr8.3:42306460-42306479 MS.gene055890:CDS 20.0%
!! ACATTGCTAGATTTAAATAA+AGG - chr8.3:42306076-42306095 None:intergenic 20.0%
!! CATTGAAAATTAGTAACATT+TGG - chr8.3:42307135-42307154 None:intergenic 20.0%
!! GACACATAAATTAACAAATA+TGG - chr8.3:42306702-42306721 None:intergenic 20.0%
!!! AACTTTTTATTCTTTACTCA+TGG + chr8.3:42306541-42306560 MS.gene055890:intron 20.0%
! AACCTTAATAAAGAAACAGA+AGG + chr8.3:42307204-42307223 MS.gene055890:CDS 25.0%
! TATATGGTTTCAAAACAGAA+GGG + chr8.3:42306391-42306410 MS.gene055890:CDS 25.0%
!! ATCCTTCTGTTTCTTTATTA+AGG - chr8.3:42307209-42307228 None:intergenic 25.0%
!!! CATAATAGGTTTTAATGTTG+TGG - chr8.3:42306028-42306047 None:intergenic 25.0%
!!! CTTTTAGAACAACATTAGAT+TGG - chr8.3:42306630-42306649 None:intergenic 25.0%
!!! GTAAAAAGCTTTTTTTTGCT+TGG - chr8.3:42307093-42307112 None:intergenic 25.0%
AAAGAAAACATGTCATTGAG+TGG - chr8.3:42307002-42307021 None:intergenic 30.0%
CATAGATCTCTTTCCTAAAA+AGG - chr8.3:42306165-42306184 None:intergenic 30.0%
CATTAAAACCTATTATGTCG+TGG + chr8.3:42306031-42306050 MS.gene055890:intron 30.0%
CTATATGGTTTCAAAACAGA+AGG + chr8.3:42306390-42306409 MS.gene055890:CDS 30.0%
GAAAGTAACTGTGTAATGAT+AGG - chr8.3:42306980-42306999 None:intergenic 30.0%
! ATGACATGTTTTCTTTTGCA+TGG + chr8.3:42307006-42307025 MS.gene055890:intron 30.0%
! CAAGAGATGTTCAAGTATTT+TGG + chr8.3:42306757-42306776 MS.gene055890:intron 30.0%
! TTAAGGTTGATTGATTCAGT+TGG - chr8.3:42307192-42307211 None:intergenic 30.0%
!! CATGTTTTAAATGTTGATGC+AGG + chr8.3:42306128-42306147 MS.gene055890:intron 30.0%
!! GTTATAATTGAGTTGAGTGA+AGG - chr8.3:42305885-42305904 None:intergenic 30.0%
!! TAGTTGGTGAAATTGATGAA+AGG - chr8.3:42306927-42306946 None:intergenic 30.0%
!!! AAGAGATCTATGTCATTTTC+AGG + chr8.3:42306173-42306192 MS.gene055890:CDS 30.0%
!!! AGAGATCTATGTCATTTTCA+GGG + chr8.3:42306174-42306193 MS.gene055890:CDS 30.0%
AAACAGTTCAGATATCAAGC+TGG + chr8.3:42307248-42307267 MS.gene055890:CDS 35.0%
AACCAAGACAGATTGCTATA+TGG + chr8.3:42306375-42306394 MS.gene055890:CDS 35.0%
AACCATATAGCAATCTGTCT+TGG - chr8.3:42306380-42306399 None:intergenic 35.0%
CTGAATGTCTTGTCTTGAAT+TGG - chr8.3:42307388-42307407 None:intergenic 35.0%
CTTGTCTGTTGAGTAGATAA+AGG - chr8.3:42307306-42307325 None:intergenic 35.0%
GAATCAAAAACTTCAGACTG+AGG + chr8.3:42306508-42306527 MS.gene055890:CDS 35.0%
GTCTTGAAGAAGATGGAAAT+AGG - chr8.3:42307335-42307354 None:intergenic 35.0%
GTGTCAAAAGATTGATCACA+TGG + chr8.3:42307407-42307426 MS.gene055890:CDS 35.0%
GTTTGTAGCATGAAATTTGC+TGG - chr8.3:42305831-42305850 None:intergenic 35.0%
TCAAGCTGGATATTTCAACA+AGG + chr8.3:42307262-42307281 MS.gene055890:CDS 35.0%
! AAAGTACCATGGTAATCTTG+AGG - chr8.3:42305918-42305937 None:intergenic 35.0%
! TCAATGCTTGTTGCAGATAT+TGG + chr8.3:42307149-42307168 MS.gene055890:intron 35.0%
! TTTGCATGGTTTCCTCATTT+TGG + chr8.3:42307020-42307039 MS.gene055890:intron 35.0%
!! ATAATTGAGTTGAGTGAAGG+TGG - chr8.3:42305882-42305901 None:intergenic 35.0%
!! GTTTTAAATGTTGATGCAGG+AGG + chr8.3:42306131-42306150 MS.gene055890:intron 35.0%
!! TCATTTTCAGGGATAGAACT+TGG + chr8.3:42306185-42306204 MS.gene055890:CDS 35.0%
!! TCTAGAGAAAGAAAGTACCA+TGG - chr8.3:42305929-42305948 None:intergenic 35.0%
!!! CTTGAGAAGAGTTTTGAGTT+AGG + chr8.3:42306299-42306318 MS.gene055890:CDS 35.0%
CAACAAGAGCTGAATTTCAG+TGG + chr8.3:42306593-42306612 MS.gene055890:intron 40.0%
GAAGAAGAGAAGGCTTAACA+TGG + chr8.3:42306262-42306281 MS.gene055890:CDS 40.0%
GAGGAAGAATTATCCGATGA+TGG + chr8.3:42306224-42306243 MS.gene055890:CDS 40.0%
TAGGTGGAAGACAAAACAGT+TGG + chr8.3:42306415-42306434 MS.gene055890:CDS 40.0%
TAGTCCAGATTGATCATCCA+TGG - chr8.3:42307466-42307485 None:intergenic 40.0%
TGGATGATCAATCTGGACTA+TGG + chr8.3:42307466-42307485 MS.gene055890:CDS 40.0%
TTAAATGTTGATGCAGGAGG+AGG + chr8.3:42306134-42306153 MS.gene055890:intron 40.0%
! GAGTAACATGTTTTGTGCCA+TGG + chr8.3:42307446-42307465 MS.gene055890:CDS 40.0%
! TTGGTTTGAAAGAGCTGATG+AGG - chr8.3:42307369-42307388 None:intergenic 40.0%
AGAGGAAAATGCAGCTAGCA+AGG + chr8.3:42306339-42306358 MS.gene055890:CDS 45.0%
AGTTAGGGGAGAAGAAGAGA+AGG + chr8.3:42306252-42306271 MS.gene055890:CDS 45.0%
ATCAATCTGGACTATGGCCA+TGG + chr8.3:42307472-42307491 MS.gene055890:CDS 45.0%
GAAACAAGCTTGAACCTGAG+AGG + chr8.3:42306321-42306340 MS.gene055890:CDS 45.0%
GAGGAAAATGCAGCTAGCAA+GGG + chr8.3:42306340-42306359 MS.gene055890:CDS 45.0%
GATCTGAGCCACGACATAAT+AGG - chr8.3:42306042-42306061 None:intergenic 45.0%
GGTTTCAAAACAGAAGGGCT+AGG + chr8.3:42306396-42306415 MS.gene055890:CDS 45.0%
TGGAGAAGAAGCTAATGTCG+AGG + chr8.3:42306205-42306224 MS.gene055890:CDS 45.0%
TGTGCCATGGATGATCAATC+TGG + chr8.3:42307459-42307478 MS.gene055890:CDS 45.0%
TGTGCTCCTCAAGATTACCA+TGG + chr8.3:42305909-42305928 MS.gene055890:CDS 45.0%
TTCAAAACAGAAGGGCTAGG+TGG + chr8.3:42306399-42306418 MS.gene055890:CDS 45.0%
! GTAATCTTGAGGAGCACATG+AGG - chr8.3:42305907-42305926 None:intergenic 45.0%
!! ATTGAGTTGAGTGAAGGTGG+AGG - chr8.3:42305879-42305898 None:intergenic 45.0%
!!! GGAGGAGGAGTATCCTTTTT+AGG + chr8.3:42306149-42306168 MS.gene055890:intron 45.0%
!!! AATGTAATATTATTTTTTTA+TGG + chr8.3:42306091-42306110 MS.gene055890:intron 5.0%
!!! ATGTAATATTATTTTTTTAT+GGG + chr8.3:42306092-42306111 MS.gene055890:intron 5.0%
AACTGCAACTGAGGCTGCAT+CGG - chr8.3:42305993-42306012 None:intergenic 50.0%
ATCTGGACTATGGCCATGGT+TGG + chr8.3:42307476-42307495 MS.gene055890:CDS 50.0%
CCATCTTCTTCAAGACCAGC+AGG + chr8.3:42307339-42307358 MS.gene055890:CDS 50.0%
CCCTAACTGCGATCCATCAT+CGG - chr8.3:42306240-42306259 None:intergenic 50.0%
CGACAACACAACTGCAACTG+AGG - chr8.3:42306002-42306021 None:intergenic 50.0%
TTATGTCGTGGCTCAGATCG+CGG + chr8.3:42306043-42306062 MS.gene055890:intron 50.0%
! AAGTGCTGTTGCTCCAACCA+TGG - chr8.3:42307492-42307511 None:intergenic 50.0%
! GCTAGCTGCATTTTCCTCTC+AGG - chr8.3:42306338-42306357 None:intergenic 50.0%
!! CCGATGATGGATCGCAGTTA+GGG + chr8.3:42306237-42306256 MS.gene055890:CDS 50.0%
!! CCTGCTGGTCTTGAAGAAGA+TGG - chr8.3:42307342-42307361 None:intergenic 50.0%
!! CGATGATGGATCGCAGTTAG+GGG + chr8.3:42306238-42306257 MS.gene055890:CDS 50.0%
!! TCCGATGATGGATCGCAGTT+AGG + chr8.3:42306236-42306255 MS.gene055890:CDS 50.0%
AGCTGATGAGGAACTCCTGC+TGG - chr8.3:42307357-42307376 None:intergenic 55.0%
ATGCAGCTAGCAAGGGCTCT+TGG + chr8.3:42306347-42306366 MS.gene055890:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 42305816 42307518 42305816 ID=MS.gene055890
chr8.3 mRNA 42305816 42307518 42305816 ID=MS.gene055890.t1;Parent=MS.gene055890
chr8.3 exon 42305816 42305930 42305816 ID=MS.gene055890.t1.exon1;Parent=MS.gene055890.t1
chr8.3 CDS 42305816 42305930 42305816 ID=cds.MS.gene055890.t1;Parent=MS.gene055890.t1
chr8.3 exon 42306150 42306529 42306150 ID=MS.gene055890.t1.exon2;Parent=MS.gene055890.t1
chr8.3 CDS 42306150 42306529 42306150 ID=cds.MS.gene055890.t1;Parent=MS.gene055890.t1
chr8.3 exon 42307165 42307518 42307165 ID=MS.gene055890.t1.exon3;Parent=MS.gene055890.t1
chr8.3 CDS 42307165 42307518 42307165 ID=cds.MS.gene055890.t1;Parent=MS.gene055890.t1
Gene Sequence

>MS.gene055890

ATGGCGTTCTTTCCAGCAAATTTCATGCTACAAACTTCTCATCAAGATGAACATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGTACTTTCTTTCTCTAGAACACTCACATAAATATCGTGAAGAATTGTCGTTAAATGCAGCCGATGCAGCCTCAGTTGCAGTTGTGTTGTCGTTACCACAACATTAAAACCTATTATGTCGTGGCTCAGATCGCGGTCGCAGACCTTTATTTAAATCTAGCAATGTAATATTATTTTTTTATGGGATGAAAGTGATAACATGTTTTAAATGTTGATGCAGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAGGAAGAATTATCCGATGATGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTAGCAAGGGCTCTTGGATTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAATCAAAAACTTCAGACTGAGGTTTGTATTGTAACTTTTTATTCTTTACTCATGGTCAAAAAAAAAAAATTTAACGAATCTAAGCAACAAGAGCTGAATTTCAGTGGATATTGATGATCCAATCTAATGTTGTTCTAAAAGACTTTTTTTTTTTGTTATGTAAAATTTTCTAAAATTTTGATGTCAAATACCATATTTGTTAATTTATGTGTCACTTGAGATGTCTATATTTTGATTTTCAAATAACACAAGAGATGTTCAAGTATTTTGGCTCAACAAGAGATGTTATAAATTTGTGTTATGTGAGATGAGATTGTTTTGATCTTGTAGAAAATAAAGCTTGAGATCATGATGAGTAGTATTTTGCCTTTTGAATATAAAAAGAAATTTCATGATTTTAAGATAACCTTTATTTCCTTTCATCAATTTCACCAACTAATGATAACTTTTATAAAAAGCTGCTTTTTTCCTATCATTACACAGTTACTTTCCACTCAATGACATGTTTTCTTTTGCATGGTTTCCTCATTTTGGTAAAAAAATTAATAATTTAATTCATCATAACATGAGAACTTTATAGTCCAAGCAAAAAAAAGCTTTTTACTTATGGTATTTTGTGATTTCCAAATGTTACTAATTTTCAATGCTTGTTGCAGATATTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGATATCAAGCTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTACTCAACAGACAAGCATAAACCTATTTCCATCTTCTTCAAGACCAGCAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAGATTGATCACATGGTTAAAGAAGAAAGCTTGAGTAACATGTTTTGTGCCATGGATGATCAATCTGGACTATGGCCATGGTTGGAGCAACAGCACTTCAATTAA

Protein sequence

>MS.gene055890.t1

MAFFPANFMLQTSHQDEHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPAGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAMDDQSGLWPWLEQQHFN