Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32994.t1 | XP_003589006.1 | 99.2 | 655 | 3 | 1 | 1 | 655 | 102 | 754 | 0.00E+00 | 1156 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32994.t1 | Q9LI74 | 33.4 | 859 | 329 | 14 | 28 | 649 | 130 | 982 | 1.3e-90 | 335.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32994.t1 | G7IB73 | 99.2 | 655 | 3 | 1 | 1 | 655 | 102 | 754 | 0.0e+00 | 1156.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051614 | MS.gene32994 | 0.861385 | 1.07E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32994.t1 | MTR_1g016290 | 98.931 | 655 | 5 | 1 | 1 | 655 | 102 | 754 | 0.0 | 1327 |
| MS.gene32994.t1 | MTR_5g053270 | 62.835 | 261 | 97 | 0 | 386 | 646 | 716 | 976 | 5.91e-112 | 360 |
| MS.gene32994.t1 | MTR_5g053270 | 37.288 | 236 | 85 | 6 | 27 | 199 | 126 | 361 | 1.03e-28 | 123 |
| MS.gene32994.t1 | MTR_4g087780 | 62.313 | 268 | 95 | 3 | 384 | 649 | 345 | 608 | 2.53e-110 | 346 |
| MS.gene32994.t1 | MTR_1g093850 | 62.214 | 262 | 98 | 1 | 386 | 647 | 711 | 971 | 1.11e-109 | 354 |
| MS.gene32994.t1 | MTR_1g093850 | 33.468 | 248 | 90 | 5 | 27 | 199 | 133 | 380 | 2.36e-25 | 112 |
| MS.gene32994.t1 | MTR_4g124070 | 50.545 | 275 | 136 | 0 | 372 | 646 | 280 | 554 | 2.74e-89 | 289 |
| MS.gene32994.t1 | MTR_4g124070 | 50.545 | 275 | 136 | 0 | 372 | 646 | 279 | 553 | 3.55e-89 | 289 |
| MS.gene32994.t1 | MTR_5g071840 | 49.057 | 265 | 130 | 4 | 386 | 649 | 160 | 420 | 5.95e-83 | 268 |
| MS.gene32994.t1 | MTR_5g071817 | 48.980 | 245 | 120 | 4 | 386 | 629 | 160 | 400 | 5.80e-75 | 246 |
| MS.gene32994.t1 | MTR_7g101060 | 72.308 | 65 | 12 | 2 | 54 | 113 | 61 | 124 | 8.34e-16 | 75.9 |
| MS.gene32994.t1 | MTR_0170s0030 | 41.053 | 95 | 51 | 1 | 105 | 199 | 220 | 309 | 6.62e-12 | 68.9 |
| MS.gene32994.t1 | MTR_2g100630 | 32.558 | 172 | 85 | 6 | 45 | 199 | 204 | 361 | 3.48e-11 | 66.6 |
| MS.gene32994.t1 | MTR_8g014900 | 38.144 | 97 | 57 | 1 | 103 | 199 | 278 | 371 | 4.16e-11 | 66.6 |
| MS.gene32994.t1 | MTR_2g100630 | 32.558 | 172 | 85 | 6 | 45 | 199 | 163 | 320 | 4.47e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 577 | 841 | 1.67e-109 | 350 |
| MS.gene32994.t1 | AT3G25690 | 49.573 | 117 | 55 | 1 | 83 | 199 | 111 | 223 | 1.93e-25 | 112 |
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.19e-108 | 350 |
| MS.gene32994.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 5.97e-26 | 114 |
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.19e-108 | 350 |
| MS.gene32994.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 5.97e-26 | 114 |
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.19e-108 | 350 |
| MS.gene32994.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 5.97e-26 | 114 |
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.19e-108 | 350 |
| MS.gene32994.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 5.97e-26 | 114 |
| MS.gene32994.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 720 | 984 | 3.38e-108 | 350 |
| MS.gene32994.t1 | AT3G25690 | 34.468 | 235 | 91 | 4 | 28 | 199 | 132 | 366 | 6.76e-26 | 114 |
| MS.gene32994.t1 | AT4G18570 | 60.806 | 273 | 98 | 4 | 383 | 649 | 350 | 619 | 7.07e-104 | 330 |
| MS.gene32994.t1 | AT1G48280 | 52.256 | 266 | 127 | 0 | 381 | 646 | 274 | 539 | 8.41e-91 | 293 |
| MS.gene32994.t1 | AT4G18570 | 59.709 | 206 | 76 | 3 | 383 | 582 | 350 | 554 | 2.11e-73 | 248 |
| MS.gene32994.t1 | AT1G07120 | 46.097 | 269 | 132 | 4 | 386 | 650 | 128 | 387 | 1.52e-72 | 239 |
| MS.gene32994.t1 | AT1G07120 | 45.771 | 201 | 100 | 3 | 386 | 582 | 128 | 323 | 9.48e-49 | 174 |
Find 128 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | 1.1:+5859426 | None:intergenic |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | 1.1:+5858776 | None:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | 1.1:-5860754 | MS.gene32994:CDS |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | 1.1:-5857880 | MS.gene32994:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | 1.1:-5857674 | MS.gene32994:CDS |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | 1.1:-5857301 | MS.gene32994:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | 1.1:+5858779 | None:intergenic |
| AAATGATCACTACTAGTTAT+TGG | 0.298597 | 1.1:+5859136 | None:intergenic |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | 1.1:-5857220 | MS.gene32994:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | 1.1:-5860802 | MS.gene32994:CDS |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | 1.1:+5858773 | None:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | 1.1:-5861030 | MS.gene32994:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | 1.1:+5859321 | None:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | 1.1:+5858782 | None:intergenic |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | 1.1:-5859074 | MS.gene32994:CDS |
| GTAGGTCTTGGAGGTGGATT+AGG | 0.352481 | 1.1:+5858860 | None:intergenic |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | 1.1:+5857987 | None:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | 1.1:-5855887 | MS.gene32994:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | 1.1:+5857893 | None:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | 1.1:-5859040 | MS.gene32994:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | 1.1:-5857969 | MS.gene32994:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | 1.1:-5857683 | MS.gene32994:CDS |
| AACTGATTTGTTCACGGAGT+TGG | 0.390136 | 1.1:-5861063 | MS.gene32994:CDS |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | 1.1:+5858006 | None:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | 1.1:+5858770 | None:intergenic |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | 1.1:-5858903 | MS.gene32994:CDS |
| GAAATAGAACATGTAGGTCT+TGG | 0.408211 | 1.1:+5858848 | None:intergenic |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | 1.1:+5859380 | None:intergenic |
| GGGTGATTTGTCATGTTCTC+AGG | 0.415794 | 1.1:-5861126 | MS.gene32994:CDS |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | 1.1:-5855852 | MS.gene32994:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | 1.1:-5860907 | MS.gene32994:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | 1.1:-5858676 | MS.gene32994:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | 1.1:-5859179 | MS.gene32994:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | 1.1:-5858895 | MS.gene32994:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | 1.1:+5858623 | None:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | 1.1:+5858752 | None:intergenic |
| GATGTTCGTAGCAGCATGAT+TGG | 0.434922 | 1.1:-5858611 | MS.gene32994:CDS |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | 1.1:+5857254 | None:intergenic |
| ATCTTCAACTGATTTGTTCA+CGG | 0.437733 | 1.1:-5861069 | MS.gene32994:CDS |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | 1.1:-5859417 | MS.gene32994:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | 1.1:+5858767 | None:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | 1.1:-5857697 | MS.gene32994:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | 1.1:-5860767 | MS.gene32994:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | 1.1:-5857181 | MS.gene32994:intron |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | 1.1:-5860782 | MS.gene32994:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | 1.1:+5857908 | None:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | 1.1:-5860859 | MS.gene32994:CDS |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | 1.1:+5860757 | None:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | 1.1:+5857193 | None:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | 1.1:+5859238 | None:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | 1.1:+5857216 | None:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | 1.1:-5859017 | MS.gene32994:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | 1.1:-5858886 | MS.gene32994:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | 1.1:-5858939 | MS.gene32994:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | 1.1:+5858684 | None:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | 1.1:-5858033 | MS.gene32994:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | 1.1:-5858310 | MS.gene32994:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | 1.1:-5859382 | MS.gene32994:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | 1.1:+5858908 | None:intergenic |
| TTGCTAGAAATAGAACATGT+AGG | 0.509736 | 1.1:+5858842 | None:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | 1.1:+5857686 | None:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | 1.1:-5858034 | MS.gene32994:intron |
| ATAGAACATGTAGGTCTTGG+AGG | 0.525377 | 1.1:+5858851 | None:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | 1.1:-5859281 | MS.gene32994:CDS |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | 1.1:+5858914 | None:intergenic |
| GAAGATTGTCTCCTATGAGT+TGG | 0.536595 | 1.1:+5861086 | None:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | 1.1:-5859330 | MS.gene32994:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | 1.1:+5859239 | None:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | 1.1:-5857922 | MS.gene32994:CDS |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | 1.1:-5860812 | MS.gene32994:CDS |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | 1.1:-5859235 | MS.gene32994:CDS |
| GGCTAAGTTGAATGCTGAGT+TGG | 0.555894 | 1.1:-5861000 | MS.gene32994:CDS |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | 1.1:-5858240 | MS.gene32994:CDS |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | 1.1:+5858761 | None:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | 1.1:-5859356 | MS.gene32994:CDS |
| TCCCTGTAGAATGGAACGTA+CGG | 0.561761 | 1.1:-5857768 | MS.gene32994:intron |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | 1.1:-5855884 | MS.gene32994:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | 1.1:-5855883 | MS.gene32994:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | 1.1:-5858662 | MS.gene32994:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | 1.1:+5857894 | None:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | 1.1:-5858945 | MS.gene32994:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | 1.1:-5858894 | MS.gene32994:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | 1.1:-5857745 | MS.gene32994:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | 1.1:-5859071 | MS.gene32994:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | 1.1:-5860880 | MS.gene32994:CDS |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | 1.1:-5860973 | MS.gene32994:CDS |
| GAACATGTAGGTCTTGGAGG+TGG | 0.581995 | 1.1:+5858854 | None:intergenic |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | 1.1:-5859350 | MS.gene32994:CDS |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | 1.1:+5859288 | None:intergenic |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | 1.1:-5858675 | MS.gene32994:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | 1.1:+5860896 | None:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | 1.1:+5858764 | None:intergenic |
| ACAAGAGTCTAAGGAGAGAG+AGG | 0.592942 | 1.1:-5861021 | MS.gene32994:CDS |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | 1.1:+5859414 | None:intergenic |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | 1.1:-5858714 | MS.gene32994:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | 1.1:-5857720 | MS.gene32994:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | 1.1:-5858659 | MS.gene32994:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | 1.1:+5858758 | None:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | 1.1:-5860718 | MS.gene32994:intron |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | 1.1:-5858738 | MS.gene32994:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | 1.1:-5859353 | MS.gene32994:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | 1.1:-5859329 | MS.gene32994:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | 1.1:-5857911 | MS.gene32994:CDS |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | 1.1:-5859431 | MS.gene32994:CDS |
| ATGCTGAGTTGGTTGAGTGT+AGG | 0.613954 | 1.1:-5860989 | MS.gene32994:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | 1.1:+5857911 | None:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | 1.1:-5859070 | MS.gene32994:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | 1.1:-5858257 | MS.gene32994:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | 1.1:-5858271 | MS.gene32994:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | 1.1:-5857669 | MS.gene32994:intron |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | 1.1:-5860868 | MS.gene32994:CDS |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | 1.1:-5857210 | MS.gene32994:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | 1.1:+5857885 | None:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | 1.1:-5860855 | MS.gene32994:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | 1.1:+5858755 | None:intergenic |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | 1.1:+5858704 | None:intergenic |
| CTATGAGTTGGAAAAGCATG+TGG | 0.648114 | 1.1:+5861098 | None:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | 1.1:-5860885 | MS.gene32994:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | 1.1:-5860893 | MS.gene32994:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | 1.1:-5858717 | MS.gene32994:CDS |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | 1.1:-5857229 | MS.gene32994:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | 1.1:+5857732 | None:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | 1.1:-5858298 | MS.gene32994:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | 1.1:-5858339 | MS.gene32994:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | 1.1:-5859202 | MS.gene32994:CDS |
| CAGCAAGTAAATGTGACGAA+CGG | 0.689590 | 1.1:+5858576 | None:intergenic |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | 1.1:-5857744 | MS.gene32994:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | 1.1:-5859023 | MS.gene32994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATAAATAAAGATG+GGG | + | chr1.1:5860201-5860220 | None:intergenic | 10.0% |
| !!! | AGTTAAATTATTTTTGTATA+TGG | - | chr1.1:5856406-5856425 | MS.gene32994:intron | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | - | chr1.1:5860727-5860746 | MS.gene32994:CDS | 10.0% |
| !! | AAATCCAAATTATTATACAA+GGG | - | chr1.1:5860058-5860077 | MS.gene32994:intron | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | - | chr1.1:5858996-5859015 | MS.gene32994:CDS | 15.0% |
| !! | CAAGAAAATAAAAAGAATTA+AGG | + | chr1.1:5860430-5860449 | None:intergenic | 15.0% |
| !! | TGAAGACATTATATTTATAT+TGG | - | chr1.1:5858495-5858514 | MS.gene32994:intron | 15.0% |
| !! | TTATGAAAATAAGCTTAAAA+AGG | - | chr1.1:5856469-5856488 | MS.gene32994:intron | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | + | chr1.1:5859417-5859436 | None:intergenic | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | - | chr1.1:5859627-5859646 | MS.gene32994:intron | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | - | chr1.1:5859418-5859437 | MS.gene32994:CDS | 15.0% |
| !!! | TCTTATTTAAATTTACCTAT+TGG | + | chr1.1:5856808-5856827 | None:intergenic | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | - | chr1.1:5859485-5859504 | MS.gene32994:intron | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | - | chr1.1:5858897-5858916 | MS.gene32994:CDS | 15.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | + | chr1.1:5860065-5860084 | None:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | + | chr1.1:5858416-5858435 | None:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | + | chr1.1:5858431-5858450 | None:intergenic | 20.0% |
| !! | AGAAATAGATATTGATATTC+AGG | + | chr1.1:5858570-5858589 | None:intergenic | 20.0% |
| !! | ATAATCTAAATATAGTCACA+AGG | + | chr1.1:5860339-5860358 | None:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | - | chr1.1:5857852-5857871 | MS.gene32994:intron | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | - | chr1.1:5857997-5858016 | MS.gene32994:CDS | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | - | chr1.1:5858584-5858603 | MS.gene32994:CDS | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | - | chr1.1:5860057-5860076 | MS.gene32994:intron | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | + | chr1.1:5858531-5858550 | None:intergenic | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | + | chr1.1:5859401-5859420 | None:intergenic | 20.0% |
| !!! | AATTTTGAATGATCGATTTT+TGG | - | chr1.1:5860667-5860686 | MS.gene32994:intron | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | - | chr1.1:5856285-5856304 | MS.gene32994:intron | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | - | chr1.1:5860730-5860749 | MS.gene32994:CDS | 20.0% |
| !!! | GTAGGAGTATTTTTTTTTTA+AGG | + | chr1.1:5857189-5857208 | None:intergenic | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | - | chr1.1:5859597-5859616 | MS.gene32994:intron | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | - | chr1.1:5858900-5858919 | MS.gene32994:CDS | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | + | chr1.1:5858406-5858425 | None:intergenic | 20.0% |
| !!! | TTTTTTTATATACTGGAAAG+TGG | - | chr1.1:5860217-5860236 | MS.gene32994:intron | 20.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | - | chr1.1:5859641-5859660 | MS.gene32994:intron | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | - | chr1.1:5858003-5858022 | MS.gene32994:CDS | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | + | chr1.1:5856743-5856762 | None:intergenic | 25.0% |
| ! | AAATGATCACTACTAGTTAT+TGG | + | chr1.1:5857809-5857828 | None:intergenic | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | - | chr1.1:5856941-5856960 | MS.gene32994:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | - | chr1.1:5857273-5857292 | MS.gene32994:CDS | 25.0% |
| ! | AGATACTGAAGTATATTATG+TGG | + | chr1.1:5859793-5859812 | None:intergenic | 25.0% |
| ! | ATAAGCTATAAGCTATATCA+GGG | - | chr1.1:5856443-5856462 | MS.gene32994:intron | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | + | chr1.1:5857367-5857386 | None:intergenic | 25.0% |
| ! | ATATATAAATAAAGATGGGG+TGG | + | chr1.1:5860198-5860217 | None:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | - | chr1.1:5859571-5859590 | MS.gene32994:intron | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | + | chr1.1:5858814-5858833 | None:intergenic | 25.0% |
| ! | GATACTGAAGTATATTATGT+GGG | + | chr1.1:5859792-5859811 | None:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | - | chr1.1:5856910-5856929 | MS.gene32994:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | - | chr1.1:5856940-5856959 | MS.gene32994:intron | 25.0% |
| ! | TATAAGCTATAAGCTATATC+AGG | - | chr1.1:5856442-5856461 | MS.gene32994:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | - | chr1.1:5856317-5856336 | MS.gene32994:intron | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | + | chr1.1:5860819-5860838 | None:intergenic | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | - | chr1.1:5856316-5856335 | MS.gene32994:intron | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | - | chr1.1:5856018-5856037 | MS.gene32994:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+GGG | - | chr1.1:5856341-5856360 | MS.gene32994:intron | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | - | chr1.1:5857868-5857887 | MS.gene32994:CDS | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | + | chr1.1:5859965-5859984 | None:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | + | chr1.1:5857475-5857494 | None:intergenic | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | - | chr1.1:5859662-5859681 | MS.gene32994:intron | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | + | chr1.1:5859460-5859479 | None:intergenic | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | - | chr1.1:5859661-5859680 | MS.gene32994:intron | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | - | chr1.1:5858632-5858651 | MS.gene32994:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | - | chr1.1:5859268-5859287 | MS.gene32994:CDS | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | + | chr1.1:5860802-5860821 | None:intergenic | 25.0% |
| !!! | CCTTCTATATTTTAGTTTCA+GGG | + | chr1.1:5860390-5860409 | None:intergenic | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | - | chr1.1:5856284-5856303 | MS.gene32994:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | - | chr1.1:5856262-5856281 | MS.gene32994:intron | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | - | chr1.1:5859062-5859081 | MS.gene32994:CDS | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | - | chr1.1:5856261-5856280 | MS.gene32994:intron | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | + | chr1.1:5858808-5858827 | None:intergenic | 25.0% |
| AAAGAATACATGCTCAACAT+TGG | - | chr1.1:5857661-5857680 | MS.gene32994:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1.1:5856368-5856387 | None:intergenic | 30.0% | |
| AATAGAAAATAGCATCAGCT+AGG | + | chr1.1:5860258-5860277 | None:intergenic | 30.0% | |
| ACCAAAATATTGCATTCACA+TGG | - | chr1.1:5858464-5858483 | MS.gene32994:intron | 30.0% | |
| AGAAGAAGACATTCAATTAG+TGG | - | chr1.1:5857902-5857921 | MS.gene32994:CDS | 30.0% | |
| AGCTTATGATGAGTCAAAAA+AGG | - | chr1.1:5860624-5860643 | MS.gene32994:intron | 30.0% | |
| AGTTTCAAATTCCTGTAGAA+TGG | - | chr1.1:5859245-5859264 | MS.gene32994:CDS | 30.0% | |
| ATAGAAAATAGCATCAGCTA+GGG | + | chr1.1:5860257-5860276 | None:intergenic | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | + | chr1.1:5857207-5857226 | None:intergenic | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | + | chr1.1:5858554-5858573 | None:intergenic | 30.0% | |
| ATTGGCAAGGTATACTATAA+TGG | - | chr1.1:5859286-5859305 | MS.gene32994:CDS | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | - | chr1.1:5858039-5858058 | MS.gene32994:intron | 30.0% | |
| CCCTGAAACTAAAATATAGA+AGG | - | chr1.1:5860387-5860406 | MS.gene32994:intron | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | + | chr1.1:5858037-5858056 | None:intergenic | 30.0% | |
| GGAGGAAATACAAAGAATTA+AGG | + | chr1.1:5860369-5860388 | None:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | - | chr1.1:5857206-5857225 | MS.gene32994:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | - | chr1.1:5857763-5857782 | MS.gene32994:intron | 30.0% | |
| TATGCAAATTAGAATAGAGG+AGG | - | chr1.1:5856913-5856932 | MS.gene32994:intron | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | + | chr1.1:5858731-5858750 | None:intergenic | 30.0% | |
| TATTTCTTAGGTGGATGAAA+GGG | - | chr1.1:5858909-5858928 | MS.gene32994:CDS | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | + | chr1.1:5857657-5857676 | None:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | + | chr1.1:5858776-5858795 | None:intergenic | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | - | chr1.1:5859495-5859514 | MS.gene32994:intron | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | + | chr1.1:5860862-5860881 | None:intergenic | 30.0% | |
| TGTTAGAGAGCTTATGAAAA+CGG | + | chr1.1:5856516-5856535 | None:intergenic | 30.0% | |
| TTAGTAACAAAGACAGATTC+AGG | + | chr1.1:5861006-5861025 | None:intergenic | 30.0% | |
| TTGCTAGAAATAGAACATGT+AGG | + | chr1.1:5858103-5858122 | None:intergenic | 30.0% | |
| TTGTTTGGATAAACAACTTG+GGG | - | chr1.1:5856342-5856361 | MS.gene32994:intron | 30.0% | |
| TTTGGTTAGAAAAGAATCAG+TGG | + | chr1.1:5860784-5860803 | None:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | + | chr1.1:5856778-5856797 | None:intergenic | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | - | chr1.1:5856241-5856260 | MS.gene32994:intron | 30.0% |
| ! | CTTGCAAATTCTTTCTAGTA+GGG | - | chr1.1:5860543-5860562 | MS.gene32994:intron | 30.0% |
| ! | CTTTGTTTGGATAAACAACT+TGG | - | chr1.1:5856340-5856359 | MS.gene32994:intron | 30.0% |
| ! | GAAGAAACATCGATTAACAA+TGG | + | chr1.1:5859842-5859861 | None:intergenic | 30.0% |
| ! | GATTCAGGAATTTTATGTTG+TGG | + | chr1.1:5860991-5861010 | None:intergenic | 30.0% |
| ! | TATTTGTTAATGCAGTTTGC+AGG | - | chr1.1:5861055-5861074 | MS.gene32994:CDS | 30.0% |
| ! | TCTTGCAAATTCTTTCTAGT+AGG | - | chr1.1:5860542-5860561 | MS.gene32994:intron | 30.0% |
| ! | TGACTTTGTTTGAACTTCAA+TGG | + | chr1.1:5859691-5859710 | None:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | + | chr1.1:5859957-5859976 | None:intergenic | 30.0% |
| ! | TTATTTCTTAGGTGGATGAA+AGG | - | chr1.1:5858908-5858927 | MS.gene32994:CDS | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | + | chr1.1:5856907-5856926 | None:intergenic | 30.0% |
| !! | ATCTTCAACTGATTTGTTCA+CGG | - | chr1.1:5855873-5855892 | MS.gene32994:CDS | 30.0% |
| !! | TGATAATGGAATTATTGGCA+AGG | - | chr1.1:5859273-5859292 | MS.gene32994:CDS | 30.0% |
| !! | TTCTTTAGAGCAATATCACA+AGG | + | chr1.1:5859060-5859079 | None:intergenic | 30.0% |
| !!! | AGTCGCAGTTTAGTTTTTTT+TGG | - | chr1.1:5860913-5860932 | MS.gene32994:CDS | 30.0% |
| !!! | ATTGAGTTGATTCTTTTCAC+TGG | - | chr1.1:5860140-5860159 | MS.gene32994:intron | 30.0% |
| !!! | CAGTTTAGTTTTTTTTGGTG+CGG | - | chr1.1:5860918-5860937 | MS.gene32994:CDS | 30.0% |
| !!! | GCCTTCTATATTTTAGTTTC+AGG | + | chr1.1:5860391-5860410 | None:intergenic | 30.0% |
| !!! | TCTATATTTTAGTTTCAGGG+AGG | + | chr1.1:5860387-5860406 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCCTAGAAGA+CGG | + | chr1.1:5859539-5859558 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | - | chr1.1:5856292-5856311 | MS.gene32994:intron | 30.0% |
| AAGGCAGATATTGAAACACA+AGG | - | chr1.1:5858603-5858622 | MS.gene32994:CDS | 35.0% | |
| AATCTCTCTTCATGAGTGAA+TGG | + | chr1.1:5858261-5858280 | None:intergenic | 35.0% | |
| ACAAACGAGCAGATTAAATG+AGG | - | chr1.1:5857586-5857605 | MS.gene32994:intron | 35.0% | |
| ACATTAAGAGAAGCAGCATT+TGG | - | chr1.1:5858973-5858992 | MS.gene32994:CDS | 35.0% | |
| ACCTACGATTGTTCATGAAT+CGG | - | chr1.1:5860032-5860051 | MS.gene32994:intron | 35.0% | |
| AGAAAAGGAACCTTACTTGT+AGG | - | chr1.1:5856175-5856194 | MS.gene32994:intron | 35.0% | |
| AGAAACAATGCATGCATTTG+AGG | - | chr1.1:5861090-5861109 | MS.gene32994:CDS | 35.0% | |
| AGAACCATATAATCCATTGC+AGG | + | chr1.1:5859729-5859748 | None:intergenic | 35.0% | |
| AGATAATCCAAACAATTCCG+AGG | - | chr1.1:5856825-5856844 | MS.gene32994:intron | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | - | chr1.1:5857740-5857759 | MS.gene32994:CDS | 35.0% | |
| ATAAACCAATATAGCGCAGA+GGG | + | chr1.1:5860291-5860310 | None:intergenic | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | + | chr1.1:5859779-5859798 | None:intergenic | 35.0% | |
| ATTTGACAAAGATCCTGCAA+TGG | - | chr1.1:5859713-5859732 | MS.gene32994:intron | 35.0% | |
| ATTTGCTTTCAGAATCCATC+AGG | - | chr1.1:5859761-5859780 | MS.gene32994:intron | 35.0% | |
| GAAATAGAACATGTAGGTCT+TGG | + | chr1.1:5858097-5858116 | None:intergenic | 35.0% | |
| GGCTTATTTGAGCTTATCTA+CGG | + | chr1.1:5856557-5856576 | None:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | - | chr1.1:5859999-5860018 | MS.gene32994:intron | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | - | chr1.1:5859259-5859278 | MS.gene32994:CDS | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | - | chr1.1:5860100-5860119 | MS.gene32994:intron | 35.0% | |
| TAATAATGTAGATCTGCCCT+TGG | + | chr1.1:5859998-5860017 | None:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | - | chr1.1:5856188-5856207 | MS.gene32994:intron | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | + | chr1.1:5856188-5856207 | None:intergenic | 35.0% | |
| TATAAATAAAGATGGGGTGG+CGG | + | chr1.1:5860195-5860214 | None:intergenic | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | - | chr1.1:5858266-5858285 | MS.gene32994:CDS | 35.0% | |
| TCCGAAACTAATAATCTCAC+AGG | - | chr1.1:5856774-5856793 | MS.gene32994:intron | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | - | chr1.1:5858671-5858690 | MS.gene32994:CDS | 35.0% | |
| TGTTGAACAAATAACGGCAT+TGG | + | chr1.1:5858031-5858050 | None:intergenic | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | - | chr1.1:5856886-5856905 | MS.gene32994:intron | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | + | chr1.1:5859259-5859278 | None:intergenic | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | - | chr1.1:5859222-5859241 | MS.gene32994:CDS | 35.0% | |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | + | chr1.1:5857128-5857147 | None:intergenic | 35.0% |
| ! | AGGAATTTTATGTTGTGGCT+AGG | + | chr1.1:5860986-5861005 | None:intergenic | 35.0% |
| ! | ATGGATTATATGGTTCTCCA+AGG | - | chr1.1:5859732-5859751 | MS.gene32994:intron | 35.0% |
| ! | CATGAAGAGAGATTCTAGAA+GGG | - | chr1.1:5858267-5858286 | MS.gene32994:CDS | 35.0% |
| ! | GAAACATCGATTAACAATGG+AGG | + | chr1.1:5859839-5859858 | None:intergenic | 35.0% |
| ! | GCCATGTGAATGCAATATTT+TGG | + | chr1.1:5858468-5858487 | None:intergenic | 35.0% |
| ! | GCTAGAAGTTGATCAAAACT+GGG | + | chr1.1:5857127-5857146 | None:intergenic | 35.0% |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | + | chr1.1:5856767-5856786 | None:intergenic | 35.0% |
| ! | TTTTGCATCTAGAGGTAACA+CGG | - | chr1.1:5858198-5858217 | MS.gene32994:intron | 35.0% |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | - | chr1.1:5855912-5855931 | MS.gene32994:intron | 35.0% |
| !! | AGATCCTGCAATGGATTATA+TGG | - | chr1.1:5859722-5859741 | MS.gene32994:intron | 35.0% |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | - | chr1.1:5858932-5858951 | MS.gene32994:CDS | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | - | chr1.1:5856327-5856346 | MS.gene32994:intron | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | - | chr1.1:5859979-5859998 | MS.gene32994:intron | 35.0% |
| !! | TGGCATTGATGAATATGTGA+AGG | - | chr1.1:5859306-5859325 | MS.gene32994:CDS | 35.0% |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | - | chr1.1:5856224-5856243 | MS.gene32994:intron | 35.0% |
| !!! | CTAGTTATTGGCCACTTTTT+CGG | + | chr1.1:5857797-5857816 | None:intergenic | 35.0% |
| !!! | TTAGTTTTTTTTGGTGCGGT+TGG | - | chr1.1:5860922-5860941 | MS.gene32994:CDS | 35.0% |
| AAATGGCTTATCCGAGCAAT+TGG | - | chr1.1:5856035-5856054 | MS.gene32994:intron | 40.0% | |
| AACCTTCTACTTGTTTGCTC+AGG | + | chr1.1:5857565-5857584 | None:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | - | chr1.1:5857589-5857608 | MS.gene32994:intron | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | + | chr1.1:5858958-5858977 | None:intergenic | 40.0% | |
| ACCTAAGTTAAATGGCAGTG+TGG | + | chr1.1:5857359-5857378 | None:intergenic | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | + | chr1.1:5856049-5856068 | None:intergenic | 40.0% | |
| ACTGAACCATGAACAATCCT+AGG | + | chr1.1:5860094-5860113 | None:intergenic | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | - | chr1.1:5856087-5856106 | MS.gene32994:intron | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | - | chr1.1:5856049-5856068 | MS.gene32994:intron | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | - | chr1.1:5856160-5856179 | MS.gene32994:intron | 40.0% | |
| ATAAGCGTGCACTTGATCAA+GGG | + | chr1.1:5856598-5856617 | None:intergenic | 40.0% | |
| ATAGAACATGTAGGTCTTGG+AGG | + | chr1.1:5858094-5858113 | None:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | - | chr1.1:5859020-5859039 | MS.gene32994:CDS | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | - | chr1.1:5858685-5858704 | MS.gene32994:CDS | 40.0% | |
| CAGCAAGTAAATGTGACGAA+CGG | + | chr1.1:5858369-5858388 | None:intergenic | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | + | chr1.1:5858193-5858212 | None:intergenic | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | + | chr1.1:5857624-5857643 | None:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | + | chr1.1:5858190-5858209 | None:intergenic | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | + | chr1.1:5858939-5858958 | None:intergenic | 40.0% | |
| GAAGATTGTCTCCTATGAGT+TGG | + | chr1.1:5855859-5855878 | None:intergenic | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | + | chr1.1:5860759-5860778 | None:intergenic | 40.0% | |
| GATAAACCAATATAGCGCAG+AGG | + | chr1.1:5860292-5860311 | None:intergenic | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | - | chr1.1:5856083-5856102 | MS.gene32994:intron | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | + | chr1.1:5860760-5860779 | None:intergenic | 40.0% | |
| GGTTAGAAAAGAATCAGTGG+CGG | + | chr1.1:5860781-5860800 | None:intergenic | 40.0% | |
| GTTTGTGTTTCCCTGTAGAA+TGG | - | chr1.1:5859165-5859184 | MS.gene32994:CDS | 40.0% | |
| TATAAGCGTGCACTTGATCA+AGG | + | chr1.1:5856599-5856618 | None:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | - | chr1.1:5856790-5856809 | MS.gene32994:intron | 40.0% | |
| TCTAGAAGGGATTCTTCAAG+TGG | - | chr1.1:5858280-5858299 | MS.gene32994:CDS | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | + | chr1.1:5859752-5859771 | None:intergenic | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | - | chr1.1:5856140-5856159 | MS.gene32994:intron | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | + | chr1.1:5857706-5857725 | None:intergenic | 40.0% | |
| TGGAAAGTGGATGCTGAAAA+AGG | - | chr1.1:5860230-5860249 | MS.gene32994:intron | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | - | chr1.1:5857783-5857802 | MS.gene32994:intron | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | - | chr1.1:5861059-5861078 | MS.gene32994:CDS | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | - | chr1.1:5859350-5859369 | MS.gene32994:CDS | 40.0% | |
| TTCATGAACAATCGTAGGTG+AGG | + | chr1.1:5860031-5860050 | None:intergenic | 40.0% | |
| TTCTAATAGCTCAGAGGAAG+AGG | - | chr1.1:5857925-5857944 | MS.gene32994:CDS | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | - | chr1.1:5856130-5856149 | MS.gene32994:intron | 40.0% | |
| TTGTTAATGCAGTTTGCAGG+AGG | - | chr1.1:5861058-5861077 | MS.gene32994:CDS | 40.0% | |
| TTTCGGAGAGCTTATGGAAA+AGG | + | chr1.1:5856761-5856780 | None:intergenic | 40.0% | |
| ! | ACCGATTCATGAACAATCGT+AGG | + | chr1.1:5860036-5860055 | None:intergenic | 40.0% |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | + | chr1.1:5856583-5856602 | None:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACTCAT+AGG | - | chr1.1:5855845-5855864 | MS.gene32994:CDS | 40.0% |
| ! | CCTATGAGTTTTGCATCTAG+AGG | - | chr1.1:5858190-5858209 | MS.gene32994:intron | 40.0% |
| ! | CTATGAGTTGGAAAAGCATG+TGG | + | chr1.1:5855847-5855866 | None:intergenic | 40.0% |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | + | chr1.1:5859942-5859961 | None:intergenic | 40.0% |
| ! | TCCACACTGCCATTTAACTT+AGG | - | chr1.1:5857355-5857374 | MS.gene32994:intron | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | - | chr1.1:5857872-5857891 | MS.gene32994:CDS | 40.0% |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | - | chr1.1:5857511-5857530 | MS.gene32994:intron | 40.0% |
| ! | TTGGATTGAATCGATTTCGG+AGG | - | chr1.1:5857871-5857890 | MS.gene32994:CDS | 40.0% |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | - | chr1.1:5856297-5856316 | MS.gene32994:intron | 40.0% |
| !! | AACAATGTGCTTTGGAGAAG+AGG | - | chr1.1:5858047-5858066 | MS.gene32994:intron | 40.0% |
| !! | AACTGATTTGTTCACGGAGT+TGG | - | chr1.1:5855879-5855898 | MS.gene32994:intron | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | - | chr1.1:5858048-5858067 | MS.gene32994:intron | 40.0% |
| !! | GAGTTGATTCTTTTCACTGG+CGG | - | chr1.1:5860143-5860162 | MS.gene32994:intron | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | - | chr1.1:5859978-5859997 | MS.gene32994:intron | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | - | chr1.1:5857919-5857938 | MS.gene32994:CDS | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | + | chr1.1:5857519-5857538 | None:intergenic | 40.0% |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | - | chr1.1:5860930-5860949 | MS.gene32994:CDS | 40.0% |
| AACCGTACGTTCCATTCTAC+AGG | + | chr1.1:5859179-5859198 | None:intergenic | 45.0% | |
| AAGTGGCTCGATGATGAACT+TGG | - | chr1.1:5858702-5858721 | MS.gene32994:CDS | 45.0% | |
| ACAAGAGTCTAAGGAGAGAG+AGG | - | chr1.1:5855921-5855940 | MS.gene32994:intron | 45.0% | |
| ACCGTACGTTCCATTCTACA+GGG | + | chr1.1:5859178-5859197 | None:intergenic | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | - | chr1.1:5858283-5858302 | MS.gene32994:CDS | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | + | chr1.1:5859052-5859071 | None:intergenic | 45.0% | |
| AGTTCCTAGAAGACGGTCAT+AGG | + | chr1.1:5859532-5859551 | None:intergenic | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | - | chr1.1:5856062-5856081 | MS.gene32994:intron | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | - | chr1.1:5857707-5857726 | MS.gene32994:CDS | 45.0% | |
| CCAGACAAAAAAGTTTGGGG+TGG | + | chr1.1:5860756-5860775 | None:intergenic | 45.0% | |
| CGGAGCCAGACAAAAAAGTT+TGG | + | chr1.1:5860761-5860780 | None:intergenic | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | + | chr1.1:5858322-5858341 | None:intergenic | 45.0% | |
| CTGCTACTCACAACAGATTG+AGG | + | chr1.1:5857707-5857726 | None:intergenic | 45.0% | |
| GACCTGAGCAAACAAGTAGA+AGG | - | chr1.1:5857560-5857579 | MS.gene32994:intron | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | - | chr1.1:5857592-5857611 | MS.gene32994:intron | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | + | chr1.1:5858187-5858206 | None:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | - | chr1.1:5858331-5858350 | MS.gene32994:CDS | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | - | chr1.1:5858644-5858663 | MS.gene32994:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | + | chr1.1:5859051-5859070 | None:intergenic | 45.0% | |
| GCCCTTGGTCAATACTCAAT+AGG | + | chr1.1:5859983-5860002 | None:intergenic | 45.0% | |
| GTATCCTATGACCGTCTTCT+AGG | - | chr1.1:5859525-5859544 | MS.gene32994:intron | 45.0% | |
| GTGTAGGAAGAATCAGAGTG+AGG | - | chr1.1:5855969-5855988 | MS.gene32994:intron | 45.0% | |
| TAAACAACTTGGGGCCTGTT+TGG | - | chr1.1:5856351-5856370 | MS.gene32994:intron | 45.0% | |
| TCCCTGTAGAATGGAACGTA+CGG | - | chr1.1:5859174-5859193 | MS.gene32994:CDS | 45.0% | |
| ! | AAGCTTTATCCCACTGAGTG+GGG | + | chr1.1:5856860-5856879 | None:intergenic | 45.0% |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | - | chr1.1:5857612-5857631 | MS.gene32994:intron | 45.0% |
| ! | ATTCTTTTCACTGGCGGAAC+TGG | - | chr1.1:5860149-5860168 | MS.gene32994:intron | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | + | chr1.1:5856861-5856880 | None:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | + | chr1.1:5856589-5856608 | None:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | + | chr1.1:5859937-5859956 | None:intergenic | 45.0% |
| ! | GAGGCACCAACTTAAAAGCA+TGG | + | chr1.1:5859820-5859839 | None:intergenic | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | - | chr1.1:5857613-5857632 | MS.gene32994:intron | 45.0% |
| ! | GGCTAAGTTGAATGCTGAGT+TGG | - | chr1.1:5855942-5855961 | MS.gene32994:intron | 45.0% |
| ! | GGGCATGTTTGGAATTGGAT+TGG | + | chr1.1:5856578-5856597 | None:intergenic | 45.0% |
| ! | GGGTGATTTGTCATGTTCTC+AGG | - | chr1.1:5855816-5855835 | MS.gene32994:CDS | 45.0% |
| ! | TTCTTTTCACTGGCGGAACT+GGG | - | chr1.1:5860150-5860169 | MS.gene32994:intron | 45.0% |
| !! | ATGCTGAGTTGGTTGAGTGT+AGG | - | chr1.1:5855953-5855972 | MS.gene32994:intron | 45.0% |
| !! | CTGTGGATTGGAAAGACAAG+AGG | - | chr1.1:5856074-5856093 | MS.gene32994:intron | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | - | chr1.1:5857133-5857152 | MS.gene32994:intron | 45.0% |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | - | chr1.1:5860753-5860772 | MS.gene32994:CDS | 45.0% |
| !! | AAAAAAAAAATATGAAAAAA+GGG | - | chr1.1:5857236-5857255 | MS.gene32994:CDS | 5.0% |
| !! | AAAAAATATATAAATAAAGA+TGG | + | chr1.1:5860203-5860222 | None:intergenic | 5.0% |
| !! | AAAAATATATAAATAAAGAT+GGG | + | chr1.1:5860202-5860221 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAATATGAAAAA+AGG | - | chr1.1:5857235-5857254 | MS.gene32994:CDS | 5.0% |
| !!! | TTATATATTTTTTTATATAC+TGG | - | chr1.1:5860210-5860229 | MS.gene32994:intron | 5.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | + | chr1.1:5860839-5860858 | None:intergenic | 5.0% |
| AAAACGAGCACCACAAGTGG+TGG | - | chr1.1:5858228-5858247 | MS.gene32994:intron | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | + | chr1.1:5859924-5859943 | None:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | + | chr1.1:5860089-5860108 | None:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | - | chr1.1:5858204-5858223 | MS.gene32994:intron | 50.0% | |
| CCACTCAGTGGGATAAAGCT+TGG | - | chr1.1:5856859-5856878 | MS.gene32994:intron | 50.0% | |
| GAACATGTAGGTCTTGGAGG+TGG | + | chr1.1:5858091-5858110 | None:intergenic | 50.0% | |
| GCAAAACTCATAGGAGGTGG+TGG | + | chr1.1:5858184-5858203 | None:intergenic | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | + | chr1.1:5856835-5856854 | None:intergenic | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | - | chr1.1:5858225-5858244 | MS.gene32994:intron | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | - | chr1.1:5856057-5856076 | MS.gene32994:intron | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | + | chr1.1:5859037-5859056 | None:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | - | chr1.1:5859915-5859934 | MS.gene32994:intron | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | + | chr1.1:5859213-5859232 | None:intergenic | 50.0% | |
| TGCTTCCCTCTGCGCTATAT+TGG | - | chr1.1:5860283-5860302 | MS.gene32994:intron | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | + | chr1.1:5858241-5858260 | None:intergenic | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | - | chr1.1:5859198-5859217 | MS.gene32994:CDS | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | - | chr1.1:5859197-5859216 | MS.gene32994:CDS | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | + | chr1.1:5856856-5856875 | None:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | + | chr1.1:5858181-5858200 | None:intergenic | 50.0% |
| ! | AAATAAAGATGGGGTGGCGG+TGG | + | chr1.1:5860192-5860211 | None:intergenic | 50.0% |
| ! | CCAAGCTTTATCCCACTGAG+TGG | + | chr1.1:5856862-5856881 | None:intergenic | 50.0% |
| ! | GTAGGTCTTGGAGGTGGATT+AGG | + | chr1.1:5858085-5858104 | None:intergenic | 50.0% |
| ! | TCTTTTCACTGGCGGAACTG+GGG | - | chr1.1:5860151-5860170 | MS.gene32994:intron | 50.0% |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | - | chr1.1:5858056-5858075 | MS.gene32994:intron | 50.0% |
| AAGCCTGAGCAGTGATGCCT+CGG | + | chr1.1:5857531-5857550 | None:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | - | chr1.1:5859031-5859050 | MS.gene32994:CDS | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | + | chr1.1:5859034-5859053 | None:intergenic | 55.0% | |
| GCCTCGCCTAGGATTGTTCA+TGG | - | chr1.1:5860085-5860104 | MS.gene32994:intron | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | - | chr1.1:5860074-5860093 | MS.gene32994:intron | 55.0% |
| ! | CTTTTCACTGGCGGAACTGG+GGG | - | chr1.1:5860152-5860171 | MS.gene32994:intron | 55.0% |
| ! | TTTTCACTGGCGGAACTGGG+GGG | - | chr1.1:5860153-5860172 | MS.gene32994:intron | 55.0% |
| TGTAGCCGACCCCACTCAGT+GGG | - | chr1.1:5856848-5856867 | MS.gene32994:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | - | chr1.1:5857525-5857544 | MS.gene32994:intron | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | + | chr1.1:5856845-5856864 | None:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | - | chr1.1:5856847-5856866 | MS.gene32994:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | + | chr1.1:5858175-5858194 | None:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | + | chr1.1:5858178-5858197 | None:intergenic | 65.0% |
| CGGAACTGGGGGGTGGCAAG+GGG | - | chr1.1:5860163-5860182 | MS.gene32994:intron | 70.0% | |
| GCGGAACTGGGGGGTGGCAA+GGG | - | chr1.1:5860162-5860181 | MS.gene32994:intron | 70.0% | |
| GGAACTGGGGGGTGGCAAGG+GGG | - | chr1.1:5860164-5860183 | MS.gene32994:intron | 70.0% | |
| TCACTGGCGGAACTGGGGGG+TGG | - | chr1.1:5860156-5860175 | MS.gene32994:intron | 70.0% | |
| GGCGGAACTGGGGGGTGGCA+AGG | - | chr1.1:5860161-5860180 | MS.gene32994:intron | 75.0% | |
| GGCGGAGGTGGAGGTGGAGG+AGG | + | chr1.1:5858163-5858182 | None:intergenic | 75.0% | |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | + | chr1.1:5858172-5858191 | None:intergenic | 75.0% |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | + | chr1.1:5858166-5858185 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | + | chr1.1:5858169-5858188 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5855814 | 5861150 | 5855814 | ID=MS.gene32994 |
| chr1.1 | mRNA | 5855814 | 5861150 | 5855814 | ID=MS.gene32994.t1;Parent=MS.gene32994 |
| chr1.1 | exon | 5860719 | 5861150 | 5860719 | ID=MS.gene32994.t1.exon1;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5860719 | 5861150 | 5860719 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5858577 | 5859461 | 5858577 | ID=MS.gene32994.t1.exon2;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5858577 | 5859461 | 5858577 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5858233 | 5858364 | 5858233 | ID=MS.gene32994.t1.exon3;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5858233 | 5858364 | 5858233 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5857864 | 5858045 | 5857864 | ID=MS.gene32994.t1.exon4;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5857864 | 5858045 | 5857864 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5857670 | 5857781 | 5857670 | ID=MS.gene32994.t1.exon5;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5857670 | 5857781 | 5857670 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5857182 | 5857325 | 5857182 | ID=MS.gene32994.t1.exon6;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5857182 | 5857325 | 5857182 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| chr1.1 | exon | 5855814 | 5855894 | 5855814 | ID=MS.gene32994.t1.exon7;Parent=MS.gene32994.t1 |
| chr1.1 | CDS | 5855814 | 5855894 | 5855814 | ID=cds.MS.gene32994.t1;Parent=MS.gene32994.t1 |
| Gene Sequence |
| Protein sequence |
