Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051614.t1 | XP_003589006.1 | 99.1 | 655 | 4 | 1 | 1 | 655 | 102 | 754 | 0.00E+00 | 1156 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051614.t1 | Q9LI74 | 33.4 | 859 | 329 | 14 | 28 | 649 | 130 | 982 | 1.0e-90 | 335.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051614.t1 | G7IB73 | 99.1 | 655 | 4 | 1 | 1 | 655 | 102 | 754 | 0.0e+00 | 1156.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051614 | MS.gene064161 | 0.807873 | 4.09E-50 | -1.69E-46 |
| MS.gene051614 | MS.gene24559 | 0.902053 | 1.44E-78 | -1.69E-46 |
| MS.gene051614 | MS.gene26801 | 0.809611 | 1.74E-50 | -1.69E-46 |
| MS.gene051614 | MS.gene32994 | 0.861385 | 1.07E-63 | -1.69E-46 |
| MS.gene051614 | MS.gene57237 | 0.870572 | 1.32E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051614.t1 | MTR_1g016290 | 98.931 | 655 | 5 | 1 | 1 | 655 | 102 | 754 | 0.0 | 1328 |
| MS.gene051614.t1 | MTR_5g053270 | 62.835 | 261 | 97 | 0 | 386 | 646 | 716 | 976 | 6.36e-112 | 360 |
| MS.gene051614.t1 | MTR_5g053270 | 37.288 | 236 | 85 | 6 | 27 | 199 | 126 | 361 | 8.08e-29 | 123 |
| MS.gene051614.t1 | MTR_4g087780 | 62.313 | 268 | 95 | 3 | 384 | 649 | 345 | 608 | 2.61e-110 | 346 |
| MS.gene051614.t1 | MTR_1g093850 | 62.214 | 262 | 98 | 1 | 386 | 647 | 711 | 971 | 1.20e-109 | 353 |
| MS.gene051614.t1 | MTR_1g093850 | 33.468 | 248 | 90 | 5 | 27 | 199 | 133 | 380 | 1.76e-25 | 112 |
| MS.gene051614.t1 | MTR_4g124070 | 50.545 | 275 | 136 | 0 | 372 | 646 | 280 | 554 | 2.68e-89 | 289 |
| MS.gene051614.t1 | MTR_4g124070 | 50.545 | 275 | 136 | 0 | 372 | 646 | 279 | 553 | 3.36e-89 | 289 |
| MS.gene051614.t1 | MTR_5g071840 | 49.057 | 265 | 130 | 4 | 386 | 649 | 160 | 420 | 5.30e-83 | 269 |
| MS.gene051614.t1 | MTR_5g071817 | 48.980 | 245 | 120 | 4 | 386 | 629 | 160 | 400 | 6.31e-75 | 246 |
| MS.gene051614.t1 | MTR_7g101060 | 72.308 | 65 | 12 | 2 | 54 | 113 | 61 | 124 | 8.84e-16 | 75.9 |
| MS.gene051614.t1 | MTR_0170s0030 | 41.053 | 95 | 51 | 1 | 105 | 199 | 220 | 309 | 6.68e-12 | 68.9 |
| MS.gene051614.t1 | MTR_8g014900 | 38.144 | 97 | 57 | 1 | 103 | 199 | 278 | 371 | 4.13e-11 | 66.6 |
| MS.gene051614.t1 | MTR_2g100630 | 32.558 | 172 | 85 | 6 | 45 | 199 | 204 | 361 | 4.84e-11 | 66.2 |
| MS.gene051614.t1 | MTR_2g100630 | 32.558 | 172 | 85 | 6 | 45 | 199 | 163 | 320 | 6.45e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 577 | 841 | 1.73e-109 | 350 |
| MS.gene051614.t1 | AT3G25690 | 49.573 | 117 | 55 | 1 | 83 | 199 | 111 | 223 | 1.93e-25 | 112 |
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.32e-108 | 350 |
| MS.gene051614.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 4.76e-26 | 114 |
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.32e-108 | 350 |
| MS.gene051614.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 4.76e-26 | 114 |
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.32e-108 | 350 |
| MS.gene051614.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 4.76e-26 | 114 |
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 718 | 982 | 3.32e-108 | 350 |
| MS.gene051614.t1 | AT3G25690 | 33.984 | 256 | 100 | 5 | 28 | 214 | 130 | 385 | 4.76e-26 | 114 |
| MS.gene051614.t1 | AT3G25690 | 62.264 | 265 | 99 | 1 | 386 | 649 | 720 | 984 | 3.38e-108 | 350 |
| MS.gene051614.t1 | AT3G25690 | 34.468 | 235 | 91 | 4 | 28 | 199 | 132 | 366 | 4.98e-26 | 114 |
| MS.gene051614.t1 | AT4G18570 | 60.806 | 273 | 98 | 4 | 383 | 649 | 350 | 619 | 7.86e-104 | 329 |
| MS.gene051614.t1 | AT1G48280 | 52.256 | 266 | 127 | 0 | 381 | 646 | 274 | 539 | 9.85e-91 | 293 |
| MS.gene051614.t1 | AT4G18570 | 59.709 | 206 | 76 | 3 | 383 | 582 | 350 | 554 | 2.02e-73 | 248 |
| MS.gene051614.t1 | AT1G07120 | 46.097 | 269 | 132 | 4 | 386 | 650 | 128 | 387 | 1.82e-72 | 239 |
| MS.gene051614.t1 | AT1G07120 | 45.771 | 201 | 100 | 3 | 386 | 582 | 128 | 323 | 9.87e-49 | 174 |
Find 128 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | 1.3:+5882157 | None:intergenic |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | 1.3:+5881507 | None:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | 1.3:-5883524 | MS.gene051614:CDS |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | 1.3:-5880641 | MS.gene051614:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | 1.3:-5880435 | MS.gene051614:CDS |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | 1.3:-5880062 | MS.gene051614:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | 1.3:+5881510 | None:intergenic |
| AAATGATCACTACTAGTTAT+TGG | 0.298597 | 1.3:+5881867 | None:intergenic |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | 1.3:-5879981 | MS.gene051614:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | 1.3:-5883572 | MS.gene051614:CDS |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | 1.3:+5881504 | None:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | 1.3:-5883800 | MS.gene051614:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | 1.3:+5882052 | None:intergenic |
| GAAGGTCTTGGAGGTGGATT+AGG | 0.341697 | 1.3:+5881591 | None:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | 1.3:+5881513 | None:intergenic |
| TACTGATTTGTTCACTGAGT+TGG | 0.344883 | 1.3:-5883833 | MS.gene051614:CDS |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | 1.3:-5881805 | MS.gene051614:CDS |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | 1.3:+5880748 | None:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | 1.3:-5879287 | MS.gene051614:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | 1.3:+5880654 | None:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | 1.3:-5881771 | MS.gene051614:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | 1.3:-5880730 | MS.gene051614:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | 1.3:-5880444 | MS.gene051614:CDS |
| ATGTTCGTAGCAGCATGATT+GGG | 0.397617 | 1.3:-5881341 | MS.gene051614:CDS |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | 1.3:+5880767 | None:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | 1.3:+5881501 | None:intergenic |
| GGGTGATTTGTCGTGTTCTC+AGG | 0.403996 | 1.3:-5883896 | MS.gene051614:CDS |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | 1.3:-5881634 | MS.gene051614:CDS |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | 1.3:+5882111 | None:intergenic |
| GAAATAGAACATGAAGGTCT+TGG | 0.415313 | 1.3:+5881579 | None:intergenic |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | 1.3:-5879252 | MS.gene051614:CDS |
| GATGTTCGTAGCAGCATGAT+TGG | 0.417117 | 1.3:-5881342 | MS.gene051614:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | 1.3:-5883677 | MS.gene051614:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | 1.3:-5881407 | MS.gene051614:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | 1.3:-5881910 | MS.gene051614:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | 1.3:-5881626 | MS.gene051614:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | 1.3:+5881354 | None:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | 1.3:+5881483 | None:intergenic |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | 1.3:+5880015 | None:intergenic |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | 1.3:-5882148 | MS.gene051614:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | 1.3:+5881498 | None:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | 1.3:-5880458 | MS.gene051614:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | 1.3:-5883537 | MS.gene051614:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | 1.3:-5879942 | MS.gene051614:intron |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | 1.3:-5883552 | MS.gene051614:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | 1.3:+5880669 | None:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | 1.3:-5883629 | MS.gene051614:CDS |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | 1.3:+5883527 | None:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | 1.3:+5879954 | None:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | 1.3:+5881969 | None:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | 1.3:+5879977 | None:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | 1.3:-5881748 | MS.gene051614:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | 1.3:-5881617 | MS.gene051614:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | 1.3:-5881670 | MS.gene051614:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | 1.3:+5881415 | None:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | 1.3:-5880794 | MS.gene051614:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | 1.3:-5881071 | MS.gene051614:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | 1.3:-5882113 | MS.gene051614:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | 1.3:+5881639 | None:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | 1.3:+5880447 | None:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | 1.3:-5880795 | MS.gene051614:intron |
| GAACATGAAGGTCTTGGAGG+TGG | 0.528351 | 1.3:+5881585 | None:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | 1.3:-5882012 | MS.gene051614:CDS |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | 1.3:+5881645 | None:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | 1.3:-5882061 | MS.gene051614:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | 1.3:+5881970 | None:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | 1.3:-5880683 | MS.gene051614:CDS |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | 1.3:-5883582 | MS.gene051614:CDS |
| GAAGATTGTCTCCTATGAGT+TGG | 0.545063 | 1.3:+5883856 | None:intergenic |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | 1.3:-5881966 | MS.gene051614:CDS |
| TTGCTAGAAATAGAACATGA+AGG | 0.550243 | 1.3:+5881573 | None:intergenic |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | 1.3:-5881001 | MS.gene051614:CDS |
| ATAGAACATGAAGGTCTTGG+AGG | 0.559160 | 1.3:+5881582 | None:intergenic |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | 1.3:+5881492 | None:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | 1.3:-5882087 | MS.gene051614:CDS |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | 1.3:-5879284 | MS.gene051614:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | 1.3:-5879283 | MS.gene051614:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | 1.3:-5881393 | MS.gene051614:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | 1.3:+5880655 | None:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | 1.3:-5881676 | MS.gene051614:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | 1.3:-5881625 | MS.gene051614:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | 1.3:-5880506 | MS.gene051614:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | 1.3:-5881802 | MS.gene051614:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | 1.3:-5883650 | MS.gene051614:CDS |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | 1.3:-5883743 | MS.gene051614:CDS |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | 1.3:-5882081 | MS.gene051614:CDS |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | 1.3:+5882019 | None:intergenic |
| TGTTCGTAGCAGCATGATTG+GGG | 0.589260 | 1.3:-5881340 | MS.gene051614:CDS |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | 1.3:-5881406 | MS.gene051614:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | 1.3:+5883666 | None:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | 1.3:+5881495 | None:intergenic |
| ACAAGAGTCTAAGGAGAGAG+AGG | 0.592942 | 1.3:-5883791 | MS.gene051614:CDS |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | 1.3:+5882145 | None:intergenic |
| TCACTGTAGAATGGAACGTA+CGG | 0.598452 | 1.3:-5880529 | MS.gene051614:intron |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | 1.3:-5881445 | MS.gene051614:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | 1.3:-5880481 | MS.gene051614:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | 1.3:-5881390 | MS.gene051614:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | 1.3:+5881489 | None:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | 1.3:-5883488 | MS.gene051614:intron |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | 1.3:-5881469 | MS.gene051614:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | 1.3:-5882084 | MS.gene051614:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | 1.3:-5882060 | MS.gene051614:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | 1.3:-5880672 | MS.gene051614:CDS |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | 1.3:-5882162 | MS.gene051614:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | 1.3:+5880672 | None:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | 1.3:-5881801 | MS.gene051614:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | 1.3:-5881018 | MS.gene051614:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | 1.3:-5881032 | MS.gene051614:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | 1.3:-5880430 | MS.gene051614:intron |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | 1.3:-5883638 | MS.gene051614:CDS |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | 1.3:-5879971 | MS.gene051614:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | 1.3:+5880646 | None:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | 1.3:-5883625 | MS.gene051614:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | 1.3:+5881486 | None:intergenic |
| ATGCTGAGTTGATTGAGTGT+AGG | 0.642095 | 1.3:-5883759 | MS.gene051614:CDS |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | 1.3:+5881435 | None:intergenic |
| CTATGAGTTGGAAAAGCATG+TGG | 0.648114 | 1.3:+5883868 | None:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | 1.3:-5883655 | MS.gene051614:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | 1.3:-5883663 | MS.gene051614:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | 1.3:-5881448 | MS.gene051614:CDS |
| CAGCAAGCAAATGTGACGAA+CGG | 0.658471 | 1.3:+5881307 | None:intergenic |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | 1.3:-5879990 | MS.gene051614:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | 1.3:+5880493 | None:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | 1.3:-5881059 | MS.gene051614:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | 1.3:-5881100 | MS.gene051614:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | 1.3:-5881933 | MS.gene051614:CDS |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | 1.3:-5880505 | MS.gene051614:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | 1.3:-5881754 | MS.gene051614:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAATATGAAAAAA+GGG | - | chr1.3:5880676-5880695 | MS.gene051614:CDS | 10.0% |
| !! | TTCAAAAAAAATATGAAAAA+AGG | - | chr1.3:5880675-5880694 | MS.gene051614:CDS | 10.0% |
| !!! | AGTTAAATTATTTTTGTATA+TGG | - | chr1.3:5879856-5879875 | MS.gene051614:intron | 10.0% |
| !! | AAATCCAAATTATTATACAA+GGG | - | chr1.3:5883467-5883486 | MS.gene051614:intron | 15.0% |
| !! | AGAAATAGATATTAATATTC+AGG | + | chr1.3:5881979-5881998 | None:intergenic | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | - | chr1.3:5882405-5882424 | MS.gene051614:intron | 15.0% |
| !! | TTATGAAAATAAGCTTAAAA+AGG | - | chr1.3:5879912-5879931 | MS.gene051614:intron | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | + | chr1.3:5882826-5882845 | None:intergenic | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | - | chr1.3:5883036-5883055 | MS.gene051614:intron | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | - | chr1.3:5882827-5882846 | MS.gene051614:intron | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | - | chr1.3:5882894-5882913 | MS.gene051614:intron | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | - | chr1.3:5882306-5882325 | MS.gene051614:intron | 15.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | + | chr1.3:5883474-5883493 | None:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | + | chr1.3:5881855-5881874 | None:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | + | chr1.3:5881870-5881889 | None:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | - | chr1.3:5881291-5881310 | MS.gene051614:intron | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | - | chr1.3:5881436-5881455 | MS.gene051614:CDS | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | - | chr1.3:5881993-5882012 | MS.gene051614:CDS | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | - | chr1.3:5883466-5883485 | MS.gene051614:intron | 20.0% |
| !! | GCTTATTTAAATTTACCTAT+TGG | + | chr1.3:5880251-5880270 | None:intergenic | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | + | chr1.3:5881940-5881959 | None:intergenic | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | + | chr1.3:5882810-5882829 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | - | chr1.3:5879685-5879704 | MS.gene051614:intron | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | - | chr1.3:5883006-5883025 | MS.gene051614:intron | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | - | chr1.3:5882309-5882328 | MS.gene051614:intron | 20.0% |
| !!! | TGTTTTTATAAGCTATATCA+GGG | - | chr1.3:5879886-5879905 | MS.gene051614:intron | 20.0% |
| !!! | TTGTAGGAGTATTTTTTTTA+AGG | + | chr1.3:5880632-5880651 | None:intergenic | 20.0% |
| !!! | TTGTTTTTATAAGCTATATC+AGG | - | chr1.3:5879885-5879904 | MS.gene051614:intron | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | + | chr1.3:5881845-5881864 | None:intergenic | 20.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | - | chr1.3:5883050-5883069 | MS.gene051614:intron | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | - | chr1.3:5881442-5881461 | MS.gene051614:CDS | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | + | chr1.3:5880186-5880205 | None:intergenic | 25.0% |
| ! | AAATGATCACTACTAGTTAT+TGG | + | chr1.3:5881248-5881267 | None:intergenic | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | - | chr1.3:5880384-5880403 | MS.gene051614:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | - | chr1.3:5880713-5880732 | MS.gene051614:CDS | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | + | chr1.3:5880807-5880826 | None:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | - | chr1.3:5882980-5882999 | MS.gene051614:intron | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | + | chr1.3:5882223-5882242 | None:intergenic | 25.0% |
| ! | CCAAAATATTGCATTCATAT+TGG | - | chr1.3:5881904-5881923 | MS.gene051614:CDS | 25.0% |
| ! | GAAGAAACATCAATTAACAA+TGG | + | chr1.3:5883251-5883270 | None:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | - | chr1.3:5880353-5880372 | MS.gene051614:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | - | chr1.3:5880383-5880402 | MS.gene051614:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | - | chr1.3:5879717-5879736 | MS.gene051614:intron | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | + | chr1.3:5883590-5883609 | None:intergenic | 25.0% |
| ! | TTAATAACAAAGACAGATTC+AGG | + | chr1.3:5883776-5883795 | None:intergenic | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | - | chr1.3:5879716-5879735 | MS.gene051614:intron | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | - | chr1.3:5879418-5879437 | MS.gene051614:intron | 25.0% |
| ! | TTGTTTGGATAAACAACTTA+GGG | - | chr1.3:5879742-5879761 | MS.gene051614:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+AGG | - | chr1.3:5879741-5879760 | MS.gene051614:intron | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | - | chr1.3:5881307-5881326 | MS.gene051614:intron | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | + | chr1.3:5883374-5883393 | None:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | + | chr1.3:5880914-5880933 | None:intergenic | 25.0% |
| !! | CCAATATGAATGCAATATTT+TGG | + | chr1.3:5881907-5881926 | None:intergenic | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | - | chr1.3:5883071-5883090 | MS.gene051614:intron | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | + | chr1.3:5882869-5882888 | None:intergenic | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | - | chr1.3:5883070-5883089 | MS.gene051614:intron | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | - | chr1.3:5882041-5882060 | MS.gene051614:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | - | chr1.3:5882677-5882696 | MS.gene051614:intron | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | + | chr1.3:5883573-5883592 | None:intergenic | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | - | chr1.3:5879684-5879703 | MS.gene051614:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | - | chr1.3:5879662-5879681 | MS.gene051614:intron | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | - | chr1.3:5882471-5882490 | MS.gene051614:intron | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | - | chr1.3:5879661-5879680 | MS.gene051614:intron | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | + | chr1.3:5882217-5882236 | None:intergenic | 25.0% |
| AAAGAATACATGCTCAACAT+TGG | - | chr1.3:5881100-5881119 | MS.gene051614:CDS | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1.3:5879768-5879787 | None:intergenic | 30.0% | |
| AGAAGAAGACATTCAATTAG+TGG | - | chr1.3:5881341-5881360 | MS.gene051614:CDS | 30.0% | |
| AGTTTCAAATTCCTGTAGAA+TGG | - | chr1.3:5882654-5882673 | MS.gene051614:intron | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | + | chr1.3:5880648-5880667 | None:intergenic | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | + | chr1.3:5881963-5881982 | None:intergenic | 30.0% | |
| ATTGCATTCATATTGGTGAA+TGG | - | chr1.3:5881911-5881930 | MS.gene051614:CDS | 30.0% | |
| ATTGGCAAGGTATACTATAA+TGG | - | chr1.3:5882695-5882714 | MS.gene051614:intron | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | - | chr1.3:5881478-5881497 | MS.gene051614:CDS | 30.0% | |
| GAAACATCAATTAACAATGG+AGG | + | chr1.3:5883248-5883267 | None:intergenic | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | + | chr1.3:5881476-5881495 | None:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | - | chr1.3:5880647-5880666 | MS.gene051614:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | - | chr1.3:5881202-5881221 | MS.gene051614:intron | 30.0% | |
| TATGCAAATTAGAATAGAGG+AGG | - | chr1.3:5880356-5880375 | MS.gene051614:intron | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | + | chr1.3:5882140-5882159 | None:intergenic | 30.0% | |
| TATTTCTTAGGTGGATGAAA+GGG | - | chr1.3:5882318-5882337 | MS.gene051614:intron | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | + | chr1.3:5881096-5881115 | None:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | + | chr1.3:5882185-5882204 | None:intergenic | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | - | chr1.3:5882904-5882923 | MS.gene051614:intron | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | + | chr1.3:5883633-5883652 | None:intergenic | 30.0% | |
| TGTTAGAGAGCTTATGAAAA+CGG | + | chr1.3:5879959-5879978 | None:intergenic | 30.0% | |
| TTGCTAGAAATAGAACATGA+AGG | + | chr1.3:5881542-5881561 | None:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | + | chr1.3:5880221-5880240 | None:intergenic | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | - | chr1.3:5879641-5879660 | MS.gene051614:intron | 30.0% |
| ! | GATTCAGGAATTTTATGTTG+TGG | + | chr1.3:5883761-5883780 | None:intergenic | 30.0% |
| ! | TATTTGTTAATGCAGTTTGC+AGG | - | chr1.3:5883825-5883844 | MS.gene051614:CDS | 30.0% |
| ! | TGACTTTGTTTGAACTTCAA+TGG | + | chr1.3:5883100-5883119 | None:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | + | chr1.3:5883366-5883385 | None:intergenic | 30.0% |
| ! | TTATTTCTTAGGTGGATGAA+AGG | - | chr1.3:5882317-5882336 | MS.gene051614:intron | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | + | chr1.3:5880350-5880369 | None:intergenic | 30.0% |
| !! | TGATAATGGAATTATTGGCA+AGG | - | chr1.3:5882682-5882701 | MS.gene051614:intron | 30.0% |
| !! | TTCTTTAGAGCAATATCACA+AGG | + | chr1.3:5882469-5882488 | None:intergenic | 30.0% |
| !!! | TTTAGTTTTTTTGGTGCTGT+TGG | - | chr1.3:5883692-5883711 | MS.gene051614:CDS | 30.0% |
| !!! | TTTTTGAAGTTCCTAGAAGA+CGG | + | chr1.3:5882948-5882967 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | - | chr1.3:5879692-5879711 | MS.gene051614:intron | 30.0% |
| AAGGCAGATATTGAAACACA+AGG | - | chr1.3:5882012-5882031 | MS.gene051614:CDS | 35.0% | |
| AATCTCTCTTCATGAGTGAA+TGG | + | chr1.3:5881700-5881719 | None:intergenic | 35.0% | |
| ACAAACGAGCAGATTAAATG+AGG | - | chr1.3:5881025-5881044 | MS.gene051614:CDS | 35.0% | |
| ACATTAAGAGAAGCAGCATT+TGG | - | chr1.3:5882382-5882401 | MS.gene051614:intron | 35.0% | |
| ACCTATGATTGTTCACGAAT+CGG | - | chr1.3:5883441-5883460 | MS.gene051614:intron | 35.0% | |
| AGAAAAGGAACCTTACTTGT+AGG | - | chr1.3:5879575-5879594 | MS.gene051614:intron | 35.0% | |
| AGAAACAATGCATGCATTTG+AGG | - | chr1.3:5883860-5883879 | MS.gene051614:CDS | 35.0% | |
| AGAACCATATAATCCATTGC+AGG | + | chr1.3:5883138-5883157 | None:intergenic | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | - | chr1.3:5881179-5881198 | MS.gene051614:intron | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | + | chr1.3:5883188-5883207 | None:intergenic | 35.0% | |
| ATTTGACAAAGATCCTGCAA+TGG | - | chr1.3:5883122-5883141 | MS.gene051614:intron | 35.0% | |
| ATTTGCAGCTTATAGCACAA+GGG | - | chr1.3:5879785-5879804 | MS.gene051614:intron | 35.0% | |
| ATTTGCTTTCAGAATCCATC+AGG | - | chr1.3:5883170-5883189 | MS.gene051614:intron | 35.0% | |
| GAAATAGAACATGAAGGTCT+TGG | + | chr1.3:5881536-5881555 | None:intergenic | 35.0% | |
| GGCTTATTTGAGCTTATCTA+CGG | + | chr1.3:5880000-5880019 | None:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | - | chr1.3:5883408-5883427 | MS.gene051614:intron | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | - | chr1.3:5882668-5882687 | MS.gene051614:intron | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | - | chr1.3:5883509-5883528 | MS.gene051614:CDS | 35.0% | |
| GTTTGTGTTTCACTGTAGAA+TGG | - | chr1.3:5882574-5882593 | MS.gene051614:intron | 35.0% | |
| TAATAATGTAGATCTGCCCT+TGG | + | chr1.3:5883407-5883426 | None:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | - | chr1.3:5879588-5879607 | MS.gene051614:intron | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | + | chr1.3:5879588-5879607 | None:intergenic | 35.0% | |
| TATTTGCAGCTTATAGCACA+AGG | - | chr1.3:5879784-5879803 | MS.gene051614:intron | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | - | chr1.3:5881705-5881724 | MS.gene051614:CDS | 35.0% | |
| TCCGAAACTAATAATCTCAC+AGG | - | chr1.3:5880217-5880236 | MS.gene051614:intron | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | - | chr1.3:5882080-5882099 | MS.gene051614:CDS | 35.0% | |
| TGTTGAACAAATAACGGCAT+TGG | + | chr1.3:5881470-5881489 | None:intergenic | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | - | chr1.3:5880329-5880348 | MS.gene051614:intron | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | + | chr1.3:5882668-5882687 | None:intergenic | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | - | chr1.3:5882631-5882650 | MS.gene051614:intron | 35.0% | |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | + | chr1.3:5880571-5880590 | None:intergenic | 35.0% |
| ! | AGGAATTTTATGTTGTGGCT+AGG | + | chr1.3:5883756-5883775 | None:intergenic | 35.0% |
| ! | ATGGATTATATGGTTCTCCA+AGG | - | chr1.3:5883141-5883160 | MS.gene051614:intron | 35.0% |
| ! | CATGAAGAGAGATTCTAGAA+GGG | - | chr1.3:5881706-5881725 | MS.gene051614:CDS | 35.0% |
| ! | GCTAGAAGTTGATCAAAACT+GGG | + | chr1.3:5880570-5880589 | None:intergenic | 35.0% |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | + | chr1.3:5880210-5880229 | None:intergenic | 35.0% |
| ! | TTTTGCATCTAGAGGTAACA+CGG | - | chr1.3:5881637-5881656 | MS.gene051614:CDS | 35.0% |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | - | chr1.3:5879312-5879331 | MS.gene051614:intron | 35.0% |
| !! | AGATCCTGCAATGGATTATA+TGG | - | chr1.3:5883131-5883150 | MS.gene051614:intron | 35.0% |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | - | chr1.3:5882341-5882360 | MS.gene051614:intron | 35.0% |
| !! | CTTTGTCCATGCTTTTAAGT+TGG | - | chr1.3:5883220-5883239 | MS.gene051614:intron | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | - | chr1.3:5879727-5879746 | MS.gene051614:intron | 35.0% |
| !! | TACTGATTTGTTCACTGAGT+TGG | - | chr1.3:5879279-5879298 | MS.gene051614:intron | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | - | chr1.3:5883388-5883407 | MS.gene051614:intron | 35.0% |
| !! | TGGCATTGATGAATATGTGA+AGG | - | chr1.3:5882715-5882734 | MS.gene051614:intron | 35.0% |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | - | chr1.3:5879624-5879643 | MS.gene051614:intron | 35.0% |
| !!! | CAGTCGCAGTTTAGTTTTTT+TGG | - | chr1.3:5883683-5883702 | MS.gene051614:CDS | 35.0% |
| !!! | CTAGTTATTGGCCACTTTTT+CGG | + | chr1.3:5881236-5881255 | None:intergenic | 35.0% |
| !!! | TTTTGGTGCTGTTGGTTTAA+CGG | - | chr1.3:5883700-5883719 | MS.gene051614:CDS | 35.0% |
| AAATGGCTTATCCGAGCAAT+TGG | - | chr1.3:5879435-5879454 | MS.gene051614:intron | 40.0% | |
| AACCTTCTACTTGTTTGCTC+AGG | + | chr1.3:5881004-5881023 | None:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | - | chr1.3:5881028-5881047 | MS.gene051614:CDS | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | + | chr1.3:5882367-5882386 | None:intergenic | 40.0% | |
| ACCTAAGTTAAATGGCAGTG+TGG | + | chr1.3:5880799-5880818 | None:intergenic | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | + | chr1.3:5879449-5879468 | None:intergenic | 40.0% | |
| ACTGAACCATGAACAATCCT+AGG | + | chr1.3:5883503-5883522 | None:intergenic | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | - | chr1.3:5879487-5879506 | MS.gene051614:intron | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | - | chr1.3:5879449-5879468 | MS.gene051614:intron | 40.0% | |
| AGCTAATCCAAACAATTCCG+AGG | - | chr1.3:5880268-5880287 | MS.gene051614:intron | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | - | chr1.3:5879560-5879579 | MS.gene051614:intron | 40.0% | |
| ATAAGCGTGCACTTGATCAA+GGG | + | chr1.3:5880041-5880060 | None:intergenic | 40.0% | |
| ATAGAACATGAAGGTCTTGG+AGG | + | chr1.3:5881533-5881552 | None:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | - | chr1.3:5882429-5882448 | MS.gene051614:intron | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | - | chr1.3:5882094-5882113 | MS.gene051614:CDS | 40.0% | |
| ATGTTCGTAGCAGCATGATT+GGG | - | chr1.3:5881771-5881790 | MS.gene051614:CDS | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | + | chr1.3:5881632-5881651 | None:intergenic | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | + | chr1.3:5881063-5881082 | None:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | + | chr1.3:5881629-5881648 | None:intergenic | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | + | chr1.3:5882348-5882367 | None:intergenic | 40.0% | |
| GAAGATTGTCTCCTATGAGT+TGG | + | chr1.3:5879259-5879278 | None:intergenic | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | - | chr1.3:5879483-5879502 | MS.gene051614:intron | 40.0% | |
| TAAACAACTTAGGGCCTGTT+TGG | - | chr1.3:5879751-5879770 | MS.gene051614:intron | 40.0% | |
| TATAAGCGTGCACTTGATCA+AGG | + | chr1.3:5880042-5880061 | None:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | - | chr1.3:5880233-5880252 | MS.gene051614:intron | 40.0% | |
| TCACTGTAGAATGGAACGTA+CGG | - | chr1.3:5882583-5882602 | MS.gene051614:intron | 40.0% | |
| TCTAGAAGGGATTCTTCAAG+TGG | - | chr1.3:5881719-5881738 | MS.gene051614:CDS | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | + | chr1.3:5883161-5883180 | None:intergenic | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | - | chr1.3:5879540-5879559 | MS.gene051614:intron | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | + | chr1.3:5881145-5881164 | None:intergenic | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | - | chr1.3:5881222-5881241 | MS.gene051614:intron | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | - | chr1.3:5883829-5883848 | MS.gene051614:CDS | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | - | chr1.3:5882759-5882778 | MS.gene051614:intron | 40.0% | |
| TTCGTGAACAATCATAGGTG+AGG | + | chr1.3:5883440-5883459 | None:intergenic | 40.0% | |
| TTCTAATAGCTCAGAGGAAG+AGG | - | chr1.3:5881364-5881383 | MS.gene051614:CDS | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | - | chr1.3:5879530-5879549 | MS.gene051614:intron | 40.0% | |
| TTGTTAATGCAGTTTGCAGG+AGG | - | chr1.3:5883828-5883847 | MS.gene051614:CDS | 40.0% | |
| TTTCGGAGAGCTTATGGAAA+AGG | + | chr1.3:5880204-5880223 | None:intergenic | 40.0% | |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | + | chr1.3:5880026-5880045 | None:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACTCAT+AGG | - | chr1.3:5879245-5879264 | MS.gene051614:CDS | 40.0% |
| ! | CCTATGAGTTTTGCATCTAG+AGG | - | chr1.3:5881629-5881648 | MS.gene051614:CDS | 40.0% |
| ! | CTATGAGTTGGAAAAGCATG+TGG | + | chr1.3:5879247-5879266 | None:intergenic | 40.0% |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | + | chr1.3:5883351-5883370 | None:intergenic | 40.0% |
| ! | GAGGTACCAACTTAAAAGCA+TGG | + | chr1.3:5883229-5883248 | None:intergenic | 40.0% |
| ! | TCCACACTGCCATTTAACTT+AGG | - | chr1.3:5880795-5880814 | MS.gene051614:intron | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | - | chr1.3:5881311-5881330 | MS.gene051614:CDS | 40.0% |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | - | chr1.3:5880950-5880969 | MS.gene051614:intron | 40.0% |
| ! | TTGGATTGAATCGATTTCGG+AGG | - | chr1.3:5881310-5881329 | MS.gene051614:CDS | 40.0% |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | - | chr1.3:5879697-5879716 | MS.gene051614:intron | 40.0% |
| !! | AACAATGTGCTTTGGAGAAG+AGG | - | chr1.3:5881486-5881505 | MS.gene051614:CDS | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | - | chr1.3:5881487-5881506 | MS.gene051614:CDS | 40.0% |
| !! | ACCGATTCGTGAACAATCAT+AGG | + | chr1.3:5883445-5883464 | None:intergenic | 40.0% |
| !! | ATGCTGAGTTGATTGAGTGT+AGG | - | chr1.3:5879353-5879372 | MS.gene051614:intron | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | - | chr1.3:5883387-5883406 | MS.gene051614:intron | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | - | chr1.3:5881358-5881377 | MS.gene051614:CDS | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | + | chr1.3:5880958-5880977 | None:intergenic | 40.0% |
| AAGTGGCTCGATGATGAACT+TGG | - | chr1.3:5882111-5882130 | MS.gene051614:CDS | 45.0% | |
| ACAAGAGTCTAAGGAGAGAG+AGG | - | chr1.3:5879321-5879340 | MS.gene051614:intron | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | - | chr1.3:5881722-5881741 | MS.gene051614:CDS | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | + | chr1.3:5882461-5882480 | None:intergenic | 45.0% | |
| AGTTCCTAGAAGACGGTCAT+AGG | + | chr1.3:5882941-5882960 | None:intergenic | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | - | chr1.3:5879462-5879481 | MS.gene051614:intron | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | - | chr1.3:5881146-5881165 | MS.gene051614:intron | 45.0% | |
| CAGCAAGCAAATGTGACGAA+CGG | + | chr1.3:5881808-5881827 | None:intergenic | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | + | chr1.3:5881761-5881780 | None:intergenic | 45.0% | |
| CTGCTACTCACAACAGATTG+AGG | + | chr1.3:5881146-5881165 | None:intergenic | 45.0% | |
| GACCTGAGCAAACAAGTAGA+AGG | - | chr1.3:5880999-5881018 | MS.gene051614:CDS | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | - | chr1.3:5881031-5881050 | MS.gene051614:CDS | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | + | chr1.3:5881626-5881645 | None:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | - | chr1.3:5881770-5881789 | MS.gene051614:CDS | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | - | chr1.3:5882053-5882072 | MS.gene051614:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | + | chr1.3:5882460-5882479 | None:intergenic | 45.0% | |
| GCCCTTGGTCAATACTCAAT+AGG | + | chr1.3:5883392-5883411 | None:intergenic | 45.0% | |
| GTATCCTATGACCGTCTTCT+AGG | - | chr1.3:5882934-5882953 | MS.gene051614:intron | 45.0% | |
| GTGTAGGAAGAATCAGAGTG+AGG | - | chr1.3:5879369-5879388 | MS.gene051614:intron | 45.0% | |
| TGTTCGTAGCAGCATGATTG+GGG | - | chr1.3:5881772-5881791 | MS.gene051614:CDS | 45.0% | |
| ! | AAGCTTTATCCCACTGAGTG+GGG | + | chr1.3:5880303-5880322 | None:intergenic | 45.0% |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | - | chr1.3:5881051-5881070 | MS.gene051614:CDS | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | + | chr1.3:5880304-5880323 | None:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | + | chr1.3:5880032-5880051 | None:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | + | chr1.3:5883346-5883365 | None:intergenic | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | - | chr1.3:5881052-5881071 | MS.gene051614:CDS | 45.0% |
| ! | GGGCATGTTTGGAATTGGAT+TGG | + | chr1.3:5880021-5880040 | None:intergenic | 45.0% |
| !! | CTGTGGATTGGAAAGACAAG+AGG | - | chr1.3:5879474-5879493 | MS.gene051614:intron | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | - | chr1.3:5880576-5880595 | MS.gene051614:intron | 45.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | + | chr1.3:5883610-5883629 | None:intergenic | 5.0% |
| AAAACGAGCACCACAAGTGG+TGG | - | chr1.3:5881667-5881686 | MS.gene051614:CDS | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | + | chr1.3:5883333-5883352 | None:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | + | chr1.3:5883498-5883517 | None:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | - | chr1.3:5881643-5881662 | MS.gene051614:CDS | 50.0% | |
| CCACTCAGTGGGATAAAGCT+TGG | - | chr1.3:5880302-5880321 | MS.gene051614:intron | 50.0% | |
| GAACATGAAGGTCTTGGAGG+TGG | + | chr1.3:5881530-5881549 | None:intergenic | 50.0% | |
| GCAAAACTCATAGGAGGTGG+TGG | + | chr1.3:5881623-5881642 | None:intergenic | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | + | chr1.3:5880278-5880297 | None:intergenic | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | - | chr1.3:5881664-5881683 | MS.gene051614:CDS | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | - | chr1.3:5879457-5879476 | MS.gene051614:intron | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | + | chr1.3:5882446-5882465 | None:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | - | chr1.3:5883324-5883343 | MS.gene051614:intron | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | + | chr1.3:5882622-5882641 | None:intergenic | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | + | chr1.3:5881680-5881699 | None:intergenic | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | - | chr1.3:5882607-5882626 | MS.gene051614:intron | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | - | chr1.3:5882606-5882625 | MS.gene051614:intron | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | + | chr1.3:5880299-5880318 | None:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | + | chr1.3:5881620-5881639 | None:intergenic | 50.0% |
| ! | CCAAGCTTTATCCCACTGAG+TGG | + | chr1.3:5880305-5880324 | None:intergenic | 50.0% |
| ! | GAAGGTCTTGGAGGTGGATT+AGG | + | chr1.3:5881524-5881543 | None:intergenic | 50.0% |
| ! | GGGTGATTTGTCGTGTTCTC+AGG | - | chr1.3:5879216-5879235 | MS.gene051614:CDS | 50.0% |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | - | chr1.3:5881495-5881514 | MS.gene051614:CDS | 50.0% |
| AAGCCTGAGCAGTGATGCCT+CGG | + | chr1.3:5880970-5880989 | None:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | - | chr1.3:5882440-5882459 | MS.gene051614:intron | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | + | chr1.3:5882443-5882462 | None:intergenic | 55.0% | |
| GCCTCGCCTAGGATTGTTCA+TGG | - | chr1.3:5883494-5883513 | MS.gene051614:CDS | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | - | chr1.3:5883483-5883502 | MS.gene051614:intron | 55.0% |
| TGTAGCCGACCCCACTCAGT+GGG | - | chr1.3:5880291-5880310 | MS.gene051614:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | - | chr1.3:5880964-5880983 | MS.gene051614:intron | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | + | chr1.3:5880288-5880307 | None:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | - | chr1.3:5880290-5880309 | MS.gene051614:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | + | chr1.3:5881614-5881633 | None:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | + | chr1.3:5881617-5881636 | None:intergenic | 65.0% |
| GGCGGAGGTGGAGGTGGAGG+AGG | + | chr1.3:5881602-5881621 | None:intergenic | 75.0% | |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | + | chr1.3:5881611-5881630 | None:intergenic | 75.0% |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | + | chr1.3:5881605-5881624 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | + | chr1.3:5881608-5881627 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 5879214 | 5883920 | 5879214 | ID=MS.gene051614 |
| chr1.3 | mRNA | 5879214 | 5883920 | 5879214 | ID=MS.gene051614.t1;Parent=MS.gene051614 |
| chr1.3 | exon | 5883489 | 5883920 | 5883489 | ID=MS.gene051614.t1.exon1;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5883489 | 5883920 | 5883489 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5881308 | 5882192 | 5881308 | ID=MS.gene051614.t1.exon2;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5881308 | 5882192 | 5881308 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5880994 | 5881125 | 5880994 | ID=MS.gene051614.t1.exon3;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5880994 | 5881125 | 5880994 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5880625 | 5880806 | 5880625 | ID=MS.gene051614.t1.exon4;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5880625 | 5880806 | 5880625 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5880431 | 5880542 | 5880431 | ID=MS.gene051614.t1.exon5;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5880431 | 5880542 | 5880431 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5879943 | 5880086 | 5879943 | ID=MS.gene051614.t1.exon6;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5879943 | 5880086 | 5879943 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| chr1.3 | exon | 5879214 | 5879294 | 5879214 | ID=MS.gene051614.t1.exon7;Parent=MS.gene051614.t1 |
| chr1.3 | CDS | 5879214 | 5879294 | 5879214 | ID=cds.MS.gene051614.t1;Parent=MS.gene051614.t1 |
| Gene Sequence |
| Protein sequence |
