AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33196

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33196.t1 MTR_8g043650 91.983 237 19 0 1 237 1 237 4.76e-163 450
MS.gene33196.t1 MTR_1g012570 93.671 237 15 0 1 237 1 237 1.85e-154 428
MS.gene33196.t1 MTR_1g105910 90.295 237 23 0 1 237 1 237 2.40e-150 418
MS.gene33196.t1 MTR_1g105920 89.474 228 24 0 1 228 1 228 4.25e-145 405
MS.gene33196.t1 MTR_2g030740 87.764 237 29 0 1 237 1 237 1.01e-144 404
MS.gene33196.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 3.99e-141 395
MS.gene33196.t1 MTR_1g105905 85.455 220 32 0 18 237 1 220 1.48e-140 392
MS.gene33196.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 3.03e-125 354
MS.gene33196.t1 MTR_3g030770 73.191 235 45 3 1 225 1 227 3.03e-118 337
MS.gene33196.t1 MTR_5g055100 67.511 237 77 0 1 237 1 237 3.15e-118 337
MS.gene33196.t1 MTR_2g085280 67.373 236 77 0 1 236 1 236 1.43e-117 335
MS.gene33196.t1 MTR_1g108510 73.191 235 45 3 1 225 1 227 1.55e-117 335
MS.gene33196.t1 MTR_2g085250 67.373 236 77 0 1 236 1 236 4.13e-117 334
MS.gene33196.t1 MTR_0121s0080 70.042 237 70 1 1 237 1 236 6.25e-117 333
MS.gene33196.t1 MTR_1g077360 69.778 225 68 0 1 225 1 225 1.18e-115 330
MS.gene33196.t1 MTR_5g045560 71.308 237 68 0 1 237 1 237 4.15e-115 329
MS.gene33196.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 4.38e-115 327
MS.gene33196.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 1.12e-114 328
MS.gene33196.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 4.57e-113 323
MS.gene33196.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 6.24e-111 318
MS.gene33196.t1 MTR_5g053390 68.444 225 71 0 1 225 1 225 3.28e-110 317
MS.gene33196.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 3.01e-99 289
MS.gene33196.t1 MTR_1g075570 64.045 178 50 1 18 195 1 164 3.13e-69 210
MS.gene33196.t1 MTR_0121s0100 78.906 128 27 0 1 128 1 128 6.23e-68 206
MS.gene33196.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 1.89e-64 197
MS.gene33196.t1 MTR_3g080940 51.892 185 79 1 7 191 7 181 8.21e-64 197
MS.gene33196.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 2.69e-44 144
MS.gene33196.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 1.13e-40 137
MS.gene33196.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 3.35e-39 134
MS.gene33196.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 2.85e-36 126
MS.gene33196.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 2.85e-36 126
MS.gene33196.t1 MTR_1g108500 58.407 113 24 2 8 118 94 185 1.72e-31 118
MS.gene33196.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 5.97e-30 110
MS.gene33196.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 2.97e-28 102
MS.gene33196.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 2.60e-24 95.1
MS.gene33196.t1 MTR_1g047550 40.559 143 67 4 9 135 2 142 5.30e-24 94.7
MS.gene33196.t1 MTR_8g051580 37.195 164 85 3 9 169 2 150 1.34e-23 94.0
MS.gene33196.t1 MTR_4g131030 33.529 170 86 5 9 162 2 160 1.39e-23 94.7
MS.gene33196.t1 MTR_8g079502 44.643 112 57 3 9 118 2 110 2.95e-23 92.8
MS.gene33196.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 4.03e-23 92.4
MS.gene33196.t1 MTR_3g067915 50.000 94 47 0 33 126 3 96 7.41e-23 89.4
MS.gene33196.t1 MTR_1g054265 43.363 113 62 1 9 121 2 112 8.17e-23 91.7
MS.gene33196.t1 MTR_8g046350 36.620 142 82 2 9 147 2 138 1.38e-21 88.2
MS.gene33196.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 4.17e-20 84.0
MS.gene33196.t1 MTR_1g053070 36.000 150 81 3 9 157 2 137 4.56e-19 83.6
MS.gene33196.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 5.58e-19 82.8
MS.gene33196.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 7.42e-19 81.6
MS.gene33196.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.20e-18 82.0
MS.gene33196.t1 MTR_3g452380 46.429 84 45 0 3 86 11 94 2.91e-18 81.3
MS.gene33196.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.27e-18 80.1
MS.gene33196.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 4.37e-18 79.3
MS.gene33196.t1 MTR_2g017865 31.351 185 98 4 9 167 17 198 4.92e-18 80.9
MS.gene33196.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.48e-17 79.0
MS.gene33196.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 1.73e-17 77.8
MS.gene33196.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.32e-17 78.6
MS.gene33196.t1 MTR_5g032150 30.405 148 86 2 9 156 2 132 5.16e-17 77.4
MS.gene33196.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.50e-17 77.8
MS.gene33196.t1 MTR_8g033220 27.928 222 134 7 10 220 3 209 6.16e-17 77.4
MS.gene33196.t1 MTR_8g033220 27.928 222 134 7 10 220 3 209 6.56e-17 77.0
MS.gene33196.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 7.10e-17 78.6
MS.gene33196.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 8.84e-17 75.9
MS.gene33196.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.11e-16 77.0
MS.gene33196.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.48e-16 76.3
MS.gene33196.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.80e-16 75.9
MS.gene33196.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 3.00e-16 75.1
MS.gene33196.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.03e-16 76.3
MS.gene33196.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 5.95e-16 76.3
MS.gene33196.t1 MTR_8g066260 36.792 106 63 2 9 114 2 103 9.92e-16 74.3
MS.gene33196.t1 MTR_0003s0590 29.384 211 110 4 9 186 2 206 1.14e-15 74.3
MS.gene33196.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.38e-15 73.9
MS.gene33196.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.42e-15 73.9
MS.gene33196.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.76e-15 68.9
MS.gene33196.t1 MTR_3g109930 32.090 134 87 2 27 159 20 150 1.90e-15 72.0
MS.gene33196.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.61e-15 72.8
MS.gene33196.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.61e-15 72.8
MS.gene33196.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.65e-15 72.8
MS.gene33196.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.71e-15 73.2
MS.gene33196.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.93e-15 72.4
MS.gene33196.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.45e-15 69.3
MS.gene33196.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 6.00e-15 71.6
MS.gene33196.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 2.05e-14 69.3
MS.gene33196.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.31e-14 70.9
MS.gene33196.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.32e-14 70.5
MS.gene33196.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 3.75e-14 68.6
MS.gene33196.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 4.29e-14 65.5
MS.gene33196.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.05e-14 69.3
MS.gene33196.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 7.43e-14 68.9
MS.gene33196.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 9.30e-14 68.9
MS.gene33196.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.16e-13 68.6
MS.gene33196.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.67e-13 67.8
MS.gene33196.t1 MTR_4g108720 28.977 176 103 7 9 172 2 167 2.28e-13 68.9
MS.gene33196.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 9.63e-13 64.3
MS.gene33196.t1 MTR_4g051538 28.512 242 137 8 5 230 5 226 1.91e-12 65.1
MS.gene33196.t1 MTR_2g045020 30.303 165 83 7 7 159 21 165 2.43e-12 63.9
MS.gene33196.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 7.30e-12 62.4
MS.gene33196.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 8.97e-12 62.4
MS.gene33196.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 1.00e-11 62.4
MS.gene33196.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 1.24e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33196.t1 AT5G60440 54.255 188 79 3 5 189 3 186 4.87e-62 196
MS.gene33196.t1 AT2G24840 49.693 163 71 4 6 162 60 217 9.66e-45 151
MS.gene33196.t1 AT1G65360 39.207 227 123 6 5 225 3 220 1.57e-42 144
MS.gene33196.t1 AT1G01530 42.708 192 98 4 4 192 2 184 5.72e-42 143
MS.gene33196.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.07e-39 137
MS.gene33196.t1 AT2G34440 37.349 166 92 4 9 169 2 160 2.63e-28 105
MS.gene33196.t1 AT3G66656 41.985 131 71 2 9 134 2 132 1.54e-25 99.0
MS.gene33196.t1 AT3G04100 30.864 162 108 3 2 159 7 168 1.72e-22 91.7
MS.gene33196.t1 AT1G72350 35.526 152 65 4 9 160 43 161 3.37e-22 91.3
MS.gene33196.t1 AT2G45660 34.524 168 82 6 10 162 3 157 6.51e-20 83.6
MS.gene33196.t1 AT1G28460 31.429 175 104 5 5 169 4 172 1.71e-19 83.2
MS.gene33196.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.86e-19 82.4
MS.gene33196.t1 AT4G09960 31.638 177 90 6 9 165 2 167 3.15e-19 83.2
MS.gene33196.t1 AT2G45660 34.337 166 81 6 10 160 3 155 3.32e-19 83.2
MS.gene33196.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.97e-19 83.2
MS.gene33196.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.21e-19 83.2
MS.gene33196.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.41e-19 83.2
MS.gene33196.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.65e-19 83.2
MS.gene33196.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.17e-18 82.4
MS.gene33196.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.29e-18 81.6
MS.gene33196.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.29e-18 81.6
MS.gene33196.t1 AT4G18960 31.092 238 138 9 5 226 15 242 1.34e-18 82.4
MS.gene33196.t1 AT4G24540 35.811 148 78 4 9 156 2 132 1.55e-18 81.6
MS.gene33196.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.42e-18 82.8
MS.gene33196.t1 AT2G22540 38.346 133 72 4 9 132 2 133 1.48e-17 79.3
MS.gene33196.t1 AT2G22540 38.346 133 72 4 9 132 2 133 1.48e-17 79.3
MS.gene33196.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.99e-17 77.4
MS.gene33196.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.65e-17 77.8
MS.gene33196.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.27e-17 75.9
MS.gene33196.t1 AT5G51870 50.000 72 36 0 5 76 21 92 4.76e-17 77.0
MS.gene33196.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.37e-17 77.8
MS.gene33196.t1 AT2G42830 50.704 71 35 0 6 76 14 84 5.48e-17 77.8
MS.gene33196.t1 AT3G58780 50.704 71 35 0 6 76 20 90 6.17e-17 77.8
MS.gene33196.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.25e-17 77.8
MS.gene33196.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.63e-17 77.0
MS.gene33196.t1 AT5G51870 53.731 67 31 0 10 76 13 79 6.96e-17 77.0
MS.gene33196.t1 AT3G61120 51.471 68 33 0 9 76 2 69 7.66e-17 77.4
MS.gene33196.t1 AT1G22130 37.143 105 65 1 9 112 2 106 7.81e-17 78.6
MS.gene33196.t1 AT1G77980 38.095 105 64 1 9 112 2 106 8.16e-17 78.6
MS.gene33196.t1 AT1G29962 29.714 175 110 5 5 169 4 175 9.09e-17 75.9
MS.gene33196.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.23e-17 75.5
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.94e-17 73.6
MS.gene33196.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
MS.gene33196.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.07e-16 77.4
MS.gene33196.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.16e-16 76.6
MS.gene33196.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.22e-16 75.5
MS.gene33196.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.27e-16 76.6
MS.gene33196.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene33196.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene33196.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene33196.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene33196.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.31e-16 75.1
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
MS.gene33196.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.59e-16 76.3
MS.gene33196.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.59e-16 76.3
MS.gene33196.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.60e-16 75.5
MS.gene33196.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.74e-16 75.1
MS.gene33196.t1 AT3G54340 29.487 156 86 3 9 162 2 135 1.87e-16 76.3
MS.gene33196.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.17e-16 76.6
MS.gene33196.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.56e-16 76.3
MS.gene33196.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.92e-16 75.9
MS.gene33196.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.35e-16 74.3
MS.gene33196.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.35e-16 74.3
MS.gene33196.t1 AT1G69120 40.659 91 51 1 9 99 2 89 3.85e-16 75.1
MS.gene33196.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.72e-16 75.1
MS.gene33196.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.72e-16 75.1
MS.gene33196.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.76e-16 74.3
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.80e-16 73.9
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.80e-16 73.9
MS.gene33196.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.01e-16 74.3
MS.gene33196.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.65e-16 74.7
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene33196.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene33196.t1 AT3G30260 29.091 165 99 4 9 172 2 149 7.06e-16 74.7
MS.gene33196.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MS.gene33196.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MS.gene33196.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.04e-16 74.7
MS.gene33196.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.07e-15 74.3
MS.gene33196.t1 AT5G23260 44.330 97 46 3 2 90 9 105 1.72e-15 73.9
MS.gene33196.t1 AT5G23260 44.330 97 46 3 2 90 9 105 1.81e-15 73.9
MS.gene33196.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.94e-15 73.2
MS.gene33196.t1 AT5G20240 47.143 70 35 1 9 76 2 71 3.03e-15 70.9
MS.gene33196.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.26e-15 72.8
MS.gene33196.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.61e-15 72.8
MS.gene33196.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.58e-15 72.8
MS.gene33196.t1 AT2G22540 37.594 133 68 5 9 132 2 128 4.67e-15 72.4
MS.gene33196.t1 AT1G17310 51.899 79 36 1 8 86 47 123 5.26e-15 72.0
MS.gene33196.t1 AT1G17310 51.899 79 36 1 8 86 58 134 6.12e-15 72.0
MS.gene33196.t1 AT5G20240 47.143 70 35 1 9 76 2 71 6.33e-15 71.6
MS.gene33196.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.03e-15 72.0
MS.gene33196.t1 AT2G14210 46.377 69 36 1 9 76 2 70 9.75e-15 71.6
MS.gene33196.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.81e-14 70.9
MS.gene33196.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.16e-14 69.7
MS.gene33196.t1 AT3G58780 53.333 60 28 0 6 65 14 73 2.22e-14 70.9
MS.gene33196.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.29e-14 69.3
MS.gene33196.t1 AT1G28450 29.518 166 102 6 5 161 4 163 2.43e-14 69.3
MS.gene33196.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.73e-14 68.9
MS.gene33196.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.86e-14 68.9
MS.gene33196.t1 AT2G03710 47.143 70 35 2 9 76 2 71 4.07e-14 68.9
MS.gene33196.t1 AT5G65050 46.377 69 36 1 9 76 2 70 4.16e-14 68.6
MS.gene33196.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.66e-14 69.7
MS.gene33196.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.88e-14 68.6
MS.gene33196.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.61e-14 68.2
MS.gene33196.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.59e-14 69.3
MS.gene33196.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.75e-14 69.3
MS.gene33196.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.97e-14 68.2
MS.gene33196.t1 AT1G24260 53.571 56 26 0 9 64 2 57 1.06e-13 68.9
MS.gene33196.t1 AT1G24260 53.571 56 26 0 9 64 2 57 1.08e-13 68.9
MS.gene33196.t1 AT1G24260 53.571 56 26 0 9 64 2 57 1.08e-13 68.6
MS.gene33196.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.11e-13 68.2
MS.gene33196.t1 AT1G47760 33.333 111 60 2 9 119 2 98 2.69e-13 66.6
MS.gene33196.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.04e-13 65.5
MS.gene33196.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.16e-13 65.9
MS.gene33196.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.53e-13 65.5
MS.gene33196.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.11e-12 65.9
MS.gene33196.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.92e-12 63.9
MS.gene33196.t1 AT1G69540 37.778 90 52 3 9 95 2 90 1.92e-11 63.2
MS.gene33196.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.24e-11 61.2
MS.gene33196.t1 AT1G69540 37.778 90 52 3 9 95 2 90 2.49e-11 63.2
MS.gene33196.t1 AT2G26320 40.000 70 40 1 9 76 18 87 3.58e-11 58.9
MS.gene33196.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.82e-11 62.4
MS.gene33196.t1 AT1G18750 37.333 75 45 1 9 81 2 76 4.06e-11 62.4
MS.gene33196.t1 AT1G18750 37.333 75 45 1 9 81 2 76 4.36e-11 62.4
MS.gene33196.t1 AT5G65080 42.029 69 39 1 9 76 9 77 4.69e-11 60.5
MS.gene33196.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.73e-11 61.6
MS.gene33196.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.18e-11 61.6
MS.gene33196.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.18e-11 61.6
MS.gene33196.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.18e-11 61.6
MS.gene33196.t1 AT5G65080 43.548 62 35 0 1 62 1 62 7.19e-11 60.1

Find 50 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTCGGTTTCAACAATA+TGG 0.268609 1.2:-9037480 MS.gene33196:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.294464 1.2:+9037545 None:intergenic
TGGTGGGCTGGTTCCGTTGA+TGG 0.307687 1.2:-9037731 MS.gene33196:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.2:+9037888 None:intergenic
AGGCAACCGAGACTCAATTT+TGG 0.344827 1.2:-9037751 MS.gene33196:CDS
GACTCAGATCAACCAGCTAT+TGG 0.396679 1.2:-9037816 MS.gene33196:CDS
TTGTTCGGTTTCAACAATAT+GGG 0.431314 1.2:-9037479 MS.gene33196:CDS
ATGTTGCAACCTCATTTGTT+CGG 0.440472 1.2:-9037494 MS.gene33196:CDS
GGTGGGCTGGTTCCGTTGAT+GGG 0.444286 1.2:-9037730 MS.gene33196:CDS
TCTTCTCATTGTCCAATAGC+TGG 0.447890 1.2:+9037804 None:intergenic
TGCTAATAGACTTGTAATCC+AGG 0.466664 1.2:-9037639 MS.gene33196:CDS
TTCCGTTGATGGGATGAATA+TGG 0.470577 1.2:-9037720 MS.gene33196:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1.2:+9037571 None:intergenic
TCTCGGTTGCCTTGCGCAAG+TGG 0.488530 1.2:+9037762 None:intergenic
GGGCTCAGATCAAAAGAATC+CGG 0.505206 1.2:+9037433 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506900 1.2:+9037934 None:intergenic
GCTGGAAATATTTGAGTTTG+CGG 0.509101 1.2:+9037536 None:intergenic
AGGTTTGAGTAGGAGCGCCC+TGG 0.514885 1.2:+9037621 None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG 0.525840 1.2:+9038018 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.527135 1.2:+9037497 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.534724 1.2:+9037498 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1.2:+9037935 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1.2:-9037942 MS.gene33196:CDS
TGTTCGGTTTCAACAATATG+GGG 0.545392 1.2:-9037478 MS.gene33196:CDS
TTGTTGAAACCGAACAAATG+AGG 0.546854 1.2:+9037485 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.2:-9038054 MS.gene33196:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.2:-9037452 MS.gene33196:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.2:-9038055 MS.gene33196:CDS
GCTCGCGCACGTTGGCACTA+CGG 0.576720 1.2:+9037852 None:intergenic
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.2:+9037965 None:intergenic
GGCCATATTCATCCCATCAA+CGG 0.588307 1.2:+9037718 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.589062 1.2:+9037745 None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG 0.589828 1.2:-9037771 MS.gene33196:CDS
CTTCAACCATGTCAAGTGGA+AGG 0.599332 1.2:-9038141 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 1.2:+9037939 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.601126 1.2:-9038145 None:intergenic
TTCGGTTTCAACAATATGGG+GGG 0.602401 1.2:-9037476 MS.gene33196:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.2:+9038041 None:intergenic
GTTCGGTTTCAACAATATGG+GGG 0.623320 1.2:-9037477 MS.gene33196:CDS
GGATTTGGTTGATGATCGAG+AGG 0.624852 1.2:+9037560 None:intergenic
GGAAATATTTGAGTTTGCGG+AGG 0.627262 1.2:+9037539 None:intergenic
AGTGAGCTTTGCACTCTCTG+TGG 0.635156 1.2:-9038016 MS.gene33196:CDS
GCTAATAGACTTGTAATCCA+GGG 0.635406 1.2:-9037638 MS.gene33196:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.2:-9037879 MS.gene33196:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.2:-9037899 MS.gene33196:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.2:+9037874 None:intergenic
AATATTGAGCTCGCGCACGT+TGG 0.641144 1.2:+9037844 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.653378 1.2:+9037436 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.678771 1.2:+9037437 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 1.2:-9038130 MS.gene33196:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.2:9037881-9037900 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.2:9037474-9037493 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+AGG + chr1.2:9037977-9037996 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.2:9037879-9037898 MS.gene33196:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.2:9037882-9037901 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1.2:9037885-9037904 MS.gene33196:CDS 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG - chr1.2:9037976-9037995 MS.gene33196:CDS 25.0%
AAAAATGGAAAGGTTTGAGT+AGG + chr1.2:9037967-9037986 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr1.2:9037982-9038001 None:intergenic 30.0%
TTGTTCGGTTTCAACAATAT+GGG - chr1.2:9038096-9038115 MS.gene33196:CDS 30.0%
TTTGTTCGGTTTCAACAATA+TGG - chr1.2:9038095-9038114 MS.gene33196:CDS 30.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1.2:9037888-9037907 MS.gene33196:CDS 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG - chr1.2:9037970-9037989 MS.gene33196:CDS 30.0%
AACAAATGAGGTTGCAACAT+AGG + chr1.2:9038081-9038100 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1.2:9038080-9038099 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr1.2:9037644-9037663 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+CGG - chr1.2:9038081-9038100 MS.gene33196:CDS 35.0%
GCTAATAGACTTGTAATCCA+GGG - chr1.2:9037937-9037956 MS.gene33196:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.2:9037643-9037662 None:intergenic 35.0%
TGCTAATAGACTTGTAATCC+AGG - chr1.2:9037936-9037955 MS.gene33196:CDS 35.0%
TGTTCGGTTTCAACAATATG+GGG - chr1.2:9038097-9038116 MS.gene33196:CDS 35.0%
TTGTTGAAACCGAACAAATG+AGG + chr1.2:9038093-9038112 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.2:9037690-9037709 None:intergenic 35.0%
! GCTGGAAATATTTGAGTTTG+CGG + chr1.2:9038042-9038061 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.2:9037689-9037708 None:intergenic 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.2:9037613-9037632 None:intergenic 40.0%
GTTCGGTTTCAACAATATGG+GGG - chr1.2:9038098-9038117 MS.gene33196:CDS 40.0%
TCTTCTCATTGTCCAATAGC+TGG + chr1.2:9037774-9037793 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.2:9037696-9037715 MS.gene33196:CDS 40.0%
TTCGGTTTCAACAATATGGG+GGG - chr1.2:9038099-9038118 MS.gene33196:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.2:9038033-9038052 None:intergenic 40.0%
! GGAAATATTTGAGTTTGCGG+AGG + chr1.2:9038039-9038058 None:intergenic 40.0%
! TTCCGTTGATGGGATGAATA+TGG - chr1.2:9037855-9037874 MS.gene33196:CDS 40.0%
!! AACCGAGACTCAATTTTGGT+GGG - chr1.2:9037828-9037847 MS.gene33196:CDS 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG + chr1.2:9038060-9038079 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.2:9037688-9037707 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.2:9037613-9037632 MS.gene33196:CDS 40.0%
AGCCCACCAAAATTGAGTCT+CGG + chr1.2:9037833-9037852 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.2:9037537-9037556 None:intergenic 45.0%
GACTCAGATCAACCAGCTAT+TGG - chr1.2:9037759-9037778 MS.gene33196:CDS 45.0%
GGCCATATTCATCCCATCAA+CGG + chr1.2:9037860-9037879 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.2:9037704-9037723 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1.2:9037639-9037658 None:intergenic 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1.2:9037633-9037652 MS.gene33196:CDS 45.0%
! AGGCAACCGAGACTCAATTT+TGG - chr1.2:9037824-9037843 MS.gene33196:CDS 45.0%
! ATGATCGAGAGGCATGTTAG+AGG + chr1.2:9038007-9038026 None:intergenic 45.0%
! CAACCGAGACTCAATTTTGG+TGG - chr1.2:9037827-9037846 MS.gene33196:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.2:9037465-9037484 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.2:9037593-9037612 MS.gene33196:CDS 45.0%
!! GGATTTGGTTGATGATCGAG+AGG + chr1.2:9038018-9038037 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.2:9037594-9037613 MS.gene33196:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.2:9037685-9037704 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.2:9037684-9037703 None:intergenic 45.0%
AATATTGAGCTCGCGCACGT+TGG + chr1.2:9037734-9037753 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCTG+TGG - chr1.2:9037559-9037578 MS.gene33196:CDS 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.2:9038102-9038121 MS.gene33196:CDS 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG - chr1.2:9037445-9037464 MS.gene33196:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.2:9038105-9038124 MS.gene33196:CDS 50.0%
! ACAGAGAGTGCAAAGCTCAC+TGG + chr1.2:9037560-9037579 None:intergenic 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.2:9037600-9037619 MS.gene33196:CDS 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG - chr1.2:9037832-9037851 MS.gene33196:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.2:9037592-9037611 MS.gene33196:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.2:9038108-9038127 MS.gene33196:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.2:9037676-9037695 MS.gene33196:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.2:9037520-9037539 MS.gene33196:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.2:9037521-9037540 MS.gene33196:CDS 55.0%
AGAGCTGAGCCACTTGCGCA+AGG - chr1.2:9037804-9037823 MS.gene33196:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1.2:9038114-9038133 MS.gene33196:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.2:9038123-9038142 MS.gene33196:CDS 60.0%
TCTCGGTTGCCTTGCGCAAG+TGG + chr1.2:9037816-9037835 None:intergenic 60.0%
!! AGGTTTGAGTAGGAGCGCCC+TGG + chr1.2:9037957-9037976 None:intergenic 60.0%
!! GGTGGGCTGGTTCCGTTGAT+GGG - chr1.2:9037845-9037864 MS.gene33196:CDS 60.0%
!! TGGTGGGCTGGTTCCGTTGA+TGG - chr1.2:9037844-9037863 MS.gene33196:CDS 60.0%
GCTCGCGCACGTTGGCACTA+CGG + chr1.2:9037726-9037745 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9037442 9038155 9037442 ID=MS.gene33196
chr1.2 mRNA 9037442 9038155 9037442 ID=MS.gene33196.t1;Parent=MS.gene33196
chr1.2 exon 9037442 9038155 9037442 ID=MS.gene33196.t1.exon1;Parent=MS.gene33196.t1
chr1.2 CDS 9037442 9038155 9037442 ID=cds.MS.gene33196.t1;Parent=MS.gene33196.t1
Gene Sequence

>MS.gene33196

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTTCACATCATGCTAATAGACTTGTAATCCAGGGCGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTCGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene33196.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVSHHANRLVIQGAPTQTFPFFVGNGSSSNMPLDHQPNPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF