Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33291.t1 | XP_003613493.1 | 99.4 | 312 | 2 | 0 | 1 | 312 | 264 | 575 | 6.50E-183 | 649.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33291.t1 | Q8RX55 | 75.3 | 312 | 77 | 0 | 1 | 312 | 292 | 603 | 6.0e-145 | 515.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33291.t1 | G7K899 | 99.4 | 312 | 2 | 0 | 1 | 312 | 264 | 575 | 4.7e-183 | 649.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054576 | MS.gene33291 | 0.814583 | 1.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGGCAAAAGCCTTTATA+TGG | 0.175346 | 5.2:+27468150 | MS.gene33291:CDS |
| CACATCGACATCTCCATTTA+TGG | 0.186722 | 5.2:-27467464 | None:intergenic |
| AATTCATATTTCCCATATAA+AGG | 0.271638 | 5.2:-27468162 | None:intergenic |
| CAATCTTTGTTGTTCAAATT+CGG | 0.298399 | 5.2:-27468626 | None:intergenic |
| ACCTTCCAAGCCAGCACTTA+TGG | 0.303144 | 5.2:-27467148 | None:intergenic |
| GCTACTGGACTATCCATAAA+TGG | 0.319682 | 5.2:+27467451 | MS.gene33291:CDS |
| AGCCTCTTCGTGATGGGAAA+TGG | 0.320876 | 5.2:+27468194 | MS.gene33291:CDS |
| CTGCCATCCGTTCAGCAAAA+TGG | 0.324595 | 5.2:-27467630 | None:intergenic |
| TTCCCCTCGGCAAAAGGATA+TGG | 0.324945 | 5.2:-27467111 | None:intergenic |
| GGTTACCATATTACTGTAGA+TGG | 0.336149 | 5.2:+27467168 | MS.gene33291:CDS |
| GCCTCCCATCTACAGTAATA+TGG | 0.354342 | 5.2:-27467173 | None:intergenic |
| AAGAAAGAAGCTGAGTATTT+CGG | 0.371671 | 5.2:+27467861 | MS.gene33291:CDS |
| GCCTCTTCGTGATGGGAAAT+GGG | 0.383482 | 5.2:+27468195 | MS.gene33291:CDS |
| TCCTCCCTATGCTAATGGTC+CGG | 0.392325 | 5.2:+27468564 | MS.gene33291:CDS |
| AAAGGATATGGCCATTCAAC+AGG | 0.428140 | 5.2:-27467099 | None:intergenic |
| TTTGCAGGGCTTTGCTCTTG+AGG | 0.428578 | 5.2:+27467426 | MS.gene33291:intron |
| AATAATTTCCCCTCGGCAAA+AGG | 0.430994 | 5.2:-27467117 | None:intergenic |
| TCGACGTTCACGTCGAGAAT+AGG | 0.437597 | 5.2:-27467577 | None:intergenic |
| GAGTATCCTCCCTATGCTAA+TGG | 0.444272 | 5.2:+27468559 | MS.gene33291:CDS |
| GACAGGTGAAATGTGAGAAA+TGG | 0.450985 | 5.2:+27466995 | MS.gene33291:CDS |
| ACCGTAGCCATATGTGAATA+CGG | 0.454656 | 5.2:+27467936 | MS.gene33291:CDS |
| TTTGCTCTTGAGGATGCTAC+TGG | 0.465724 | 5.2:+27467436 | MS.gene33291:CDS |
| TTTGTTCTCACCATAAGTGC+TGG | 0.468531 | 5.2:+27467138 | MS.gene33291:CDS |
| ACTTACCCCGTATTCACATA+TGG | 0.484233 | 5.2:-27467943 | None:intergenic |
| ACCATAAGTGCTGGCTTGGA+AGG | 0.493901 | 5.2:+27467147 | MS.gene33291:CDS |
| TCTCACCATAAGTGCTGGCT+TGG | 0.501173 | 5.2:+27467143 | MS.gene33291:CDS |
| TGCATCTTGAATTGCTTCCT+CGG | 0.501647 | 5.2:+27467542 | MS.gene33291:CDS |
| ACTGGCAAAAGCCTTTATAT+GGG | 0.506001 | 5.2:+27468151 | MS.gene33291:CDS |
| CCTCCCTATGCTAATGGTCC+GGG | 0.510438 | 5.2:+27468565 | MS.gene33291:CDS |
| ATGATAATCGATCGGAAGAG+TGG | 0.511206 | 5.2:+27467028 | MS.gene33291:CDS |
| AGCGTACTCACTGTGCGATA+CGG | 0.515157 | 5.2:-27467210 | None:intergenic |
| AGGTCATAATGATCCATGTA+TGG | 0.523145 | 5.2:-27467900 | None:intergenic |
| GAAGCGAGAGAAGTTCAAAC+TGG | 0.524888 | 5.2:+27468133 | MS.gene33291:CDS |
| CCGTAGCCATATGTGAATAC+GGG | 0.534702 | 5.2:+27467937 | MS.gene33291:CDS |
| GCTAGGATGTGACGTAGGTA+AGG | 0.535049 | 5.2:-27467506 | None:intergenic |
| TTCTCATATGATAGCATGGA+AGG | 0.539227 | 5.2:+27467817 | MS.gene33291:intron |
| TGAATTGCTTCCTCGGTGGA+AGG | 0.540040 | 5.2:+27467549 | MS.gene33291:CDS |
| TTCATCGGTATCCTTTCCGC+TGG | 0.545085 | 5.2:+27467604 | MS.gene33291:CDS |
| TAATCGATCGGAAGAGTGGA+AGG | 0.545435 | 5.2:+27467032 | MS.gene33291:CDS |
| CACCACAAGCCTCTTCGTGA+TGG | 0.554919 | 5.2:+27468187 | MS.gene33291:CDS |
| ACCACAAGCCTCTTCGTGAT+GGG | 0.555609 | 5.2:+27468188 | MS.gene33291:CDS |
| GTATTATGAAGTTGATGGAC+AGG | 0.557823 | 5.2:+27466978 | None:intergenic |
| AATCCTCACATGTTGTGGCT+CGG | 0.558730 | 5.2:+27467686 | MS.gene33291:CDS |
| TGATGACACATTTGTTAGAG+TGG | 0.559111 | 5.2:+27468096 | MS.gene33291:CDS |
| TATTATTATAGTACCATACA+TGG | 0.560456 | 5.2:+27467887 | MS.gene33291:CDS |
| AAAAGGTTGTGCCTGTTGAA+TGG | 0.563162 | 5.2:+27467088 | MS.gene33291:CDS |
| GGATGGCAGTGAGGAAGTCA+TGG | 0.565412 | 5.2:+27467644 | MS.gene33291:CDS |
| CGGAAGAGTGGAAGGCGACA+TGG | 0.566217 | 5.2:+27467040 | MS.gene33291:CDS |
| CAAAATGGTTGCCAGCGGAA+AGG | 0.574275 | 5.2:-27467615 | None:intergenic |
| GTTACCATATTACTGTAGAT+GGG | 0.574941 | 5.2:+27467169 | MS.gene33291:CDS |
| CATATGATAGCATGGAAGGA+AGG | 0.577688 | 5.2:+27467821 | MS.gene33291:intron |
| AATCAAATCCTCACATGTTG+TGG | 0.579699 | 5.2:+27467681 | MS.gene33291:CDS |
| CCCGTATTCACATATGGCTA+CGG | 0.581900 | 5.2:-27467937 | None:intergenic |
| TGCATCTGAGGAGCAAAGCT+AGG | 0.590326 | 5.2:-27467523 | None:intergenic |
| TCCCATCACGAAGAGGCTTG+TGG | 0.593622 | 5.2:-27468189 | None:intergenic |
| TGGAAGGAAGGATATAAATG+TGG | 0.597803 | 5.2:+27467833 | MS.gene33291:CDS |
| TGGTGGTTGAACAGACTGAT+GGG | 0.598029 | 5.2:+27467060 | MS.gene33291:CDS |
| GCCCATTTCCCATCACGAAG+AGG | 0.603078 | 5.2:-27468196 | None:intergenic |
| ACTCACTGTGCGATACGGAA+AGG | 0.606028 | 5.2:-27467205 | None:intergenic |
| GTAACCCGGACCATTAGCAT+AGG | 0.612753 | 5.2:-27468569 | None:intergenic |
| AGCAATTCAAGATGCATCTG+AGG | 0.613799 | 5.2:-27467535 | None:intergenic |
| TAACCCGGACCATTAGCATA+GGG | 0.618930 | 5.2:-27468568 | None:intergenic |
| TCATGACGATGATAATCGAT+CGG | 0.621087 | 5.2:+27467020 | MS.gene33291:CDS |
| TCAGATGAGACGATGTAACC+CGG | 0.627122 | 5.2:-27468583 | None:intergenic |
| ACGTTCACGTCGAGAATAGG+TGG | 0.644737 | 5.2:-27467574 | None:intergenic |
| ATGGTGGTTGAACAGACTGA+TGG | 0.648523 | 5.2:+27467059 | MS.gene33291:CDS |
| GAGAACAAATAATTTCCCCT+CGG | 0.652416 | 5.2:-27467124 | None:intergenic |
| AAACCGAGCCACAACATGTG+AGG | 0.655859 | 5.2:-27467689 | None:intergenic |
| ATCTTGAATTGCTTCCTCGG+TGG | 0.660235 | 5.2:+27467545 | MS.gene33291:CDS |
| TTCAGCAAAATGGTTGCCAG+CGG | 0.662468 | 5.2:-27467620 | None:intergenic |
| CATCACGAAGAGGCTTGTGG+TGG | 0.667950 | 5.2:-27468186 | None:intergenic |
| CGTAGCCATATGTGAATACG+GGG | 0.668335 | 5.2:+27467938 | MS.gene33291:CDS |
| CCCGGACCATTAGCATAGGG+AGG | 0.670203 | 5.2:-27468565 | None:intergenic |
| CTACGGTCTTCAAAACAACA+AGG | 0.675660 | 5.2:-27467920 | None:intergenic |
| ACCATATTACTGTAGATGGG+AGG | 0.678419 | 5.2:+27467172 | MS.gene33291:CDS |
| TTGCTGAACGGATGGCAGTG+AGG | 0.693528 | 5.2:+27467635 | MS.gene33291:CDS |
| AAGAGTGGAAGGCGACATGG+TGG | 0.710787 | 5.2:+27467043 | MS.gene33291:CDS |
| ATAGGTGGTGCCTTCCACCG+AGG | 0.716320 | 5.2:-27467559 | None:intergenic |
| GCAAAGCTAGGATGTGACGT+AGG | 0.716729 | 5.2:-27467511 | None:intergenic |
| GAAATGGGCTGTAACTTACG+AGG | 0.732396 | 5.2:+27468210 | MS.gene33291:CDS |
| GGTGGTTGAACAGACTGATG+GGG | 0.755167 | 5.2:+27467061 | MS.gene33291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTTTATCATTATTT+AGG | - | chr5.2:27467754-27467773 | None:intergenic | 10.0% |
| !! | AAAAAAGAATTTGTAACAAA+TGG | - | chr5.2:27468696-27468715 | None:intergenic | 15.0% |
| !! | CAAAAAATTGATGTTAAAAA+GGG | + | chr5.2:27467265-27467284 | MS.gene33291:intron | 15.0% |
| !! | TCAAAAAATTGATGTTAAAA+AGG | + | chr5.2:27467264-27467283 | MS.gene33291:intron | 15.0% |
| !!! | TTGTTAAGTTGATTTATTAT+TGG | + | chr5.2:27468009-27468028 | MS.gene33291:intron | 15.0% |
| !!! | TTTTTAACATCAATTTTTTG+AGG | - | chr5.2:27467265-27467284 | None:intergenic | 15.0% |
| !! | AATTCATATTTCCCATATAA+AGG | - | chr5.2:27468165-27468184 | None:intergenic | 20.0% |
| !! | TATTATTATAGTACCATACA+TGG | + | chr5.2:27467887-27467906 | MS.gene33291:CDS | 20.0% |
| !!! | GTGTTACAGTAATTTTTAAA+AGG | + | chr5.2:27468761-27468780 | MS.gene33291:intron | 20.0% |
| !!! | TTTTATTTTGCGTAATTTTC+AGG | + | chr5.2:27468522-27468541 | MS.gene33291:intron | 20.0% |
| !!! | TTTTTTATATTATAGGTAGC+TGG | + | chr5.2:27468297-27468316 | MS.gene33291:intron | 20.0% |
| !! | ATGTTATATTCACATTTTGC+AGG | + | chr5.2:27467411-27467430 | MS.gene33291:intron | 25.0% |
| !! | TGTTATATTCACATTTTGCA+GGG | + | chr5.2:27467412-27467431 | MS.gene33291:intron | 25.0% |
| !! | TTGCATAGAATTTTCAAAAC+CGG | - | chr5.2:27468408-27468427 | None:intergenic | 25.0% |
| !!! | CAATCTTTGTTGTTCAAATT+CGG | - | chr5.2:27468629-27468648 | None:intergenic | 25.0% |
| AAGAAAGAAGCTGAGTATTT+CGG | + | chr5.2:27467861-27467880 | MS.gene33291:CDS | 30.0% | |
| GTTACCATATTACTGTAGAT+GGG | + | chr5.2:27467169-27467188 | MS.gene33291:CDS | 30.0% | |
| ! | AACAAATGGACTCAAAATGA+GGG | - | chr5.2:27468682-27468701 | None:intergenic | 30.0% |
| ! | ACGAGGTATAAGTTTTCTTT+TGG | + | chr5.2:27468227-27468246 | MS.gene33291:intron | 30.0% |
| ! | TAACAAATGGACTCAAAATG+AGG | - | chr5.2:27468683-27468702 | None:intergenic | 30.0% |
| ! | TCACGTTTAGAGTATTTCAT+CGG | + | chr5.2:27468739-27468758 | MS.gene33291:intron | 30.0% |
| ! | TGCATAGAATTTTCAAAACC+GGG | - | chr5.2:27468407-27468426 | None:intergenic | 30.0% |
| !! | ATGTTAAAAAGGGTGTCATT+TGG | + | chr5.2:27467275-27467294 | MS.gene33291:intron | 30.0% |
| !! | TTTGCGTAATTTTCAGGAAT+GGG | + | chr5.2:27468528-27468547 | MS.gene33291:intron | 30.0% |
| !! | TTTTGCGTAATTTTCAGGAA+TGG | + | chr5.2:27468527-27468546 | MS.gene33291:intron | 30.0% |
| !!! | TCGACTTTTGTTTTGTTTTG+TGG | + | chr5.2:27468451-27468470 | MS.gene33291:intron | 30.0% |
| !!! | TTTGTTTTGTTTTGTGGCTT+TGG | + | chr5.2:27468457-27468476 | MS.gene33291:intron | 30.0% |
| AACTGGCAAAAGCCTTTATA+TGG | + | chr5.2:27468150-27468169 | MS.gene33291:CDS | 35.0% | |
| AATCAAATCCTCACATGTTG+TGG | + | chr5.2:27467681-27467700 | MS.gene33291:CDS | 35.0% | |
| ACTGGCAAAAGCCTTTATAT+GGG | + | chr5.2:27468151-27468170 | MS.gene33291:CDS | 35.0% | |
| AGGTCATAATGATCCATGTA+TGG | - | chr5.2:27467903-27467922 | None:intergenic | 35.0% | |
| CCATGCTATCATATGAGAAA+TGG | - | chr5.2:27467816-27467835 | None:intergenic | 35.0% | |
| CCATTTCTCATATGATAGCA+TGG | + | chr5.2:27467813-27467832 | MS.gene33291:intron | 35.0% | |
| GAGAACAAATAATTTCCCCT+CGG | - | chr5.2:27467127-27467146 | None:intergenic | 35.0% | |
| GGTTACCATATTACTGTAGA+TGG | + | chr5.2:27467168-27467187 | MS.gene33291:CDS | 35.0% | |
| TCATGACGATGATAATCGAT+CGG | + | chr5.2:27467020-27467039 | MS.gene33291:CDS | 35.0% | |
| TGAGTACGCTAATCATATCA+TGG | + | chr5.2:27467223-27467242 | MS.gene33291:intron | 35.0% | |
| TGGAAGGAAGGATATAAATG+TGG | + | chr5.2:27467833-27467852 | MS.gene33291:CDS | 35.0% | |
| TTCTCATATGATAGCATGGA+AGG | + | chr5.2:27467817-27467836 | MS.gene33291:intron | 35.0% | |
| ! | TGATGACACATTTGTTAGAG+TGG | + | chr5.2:27468096-27468115 | MS.gene33291:CDS | 35.0% |
| !! | TAATTTTCAGGAATGGGTAG+AGG | + | chr5.2:27468534-27468553 | MS.gene33291:intron | 35.0% |
| !!! | TATTATAGGTAGCTGGCTTT+TGG | + | chr5.2:27468304-27468323 | MS.gene33291:intron | 35.0% |
| AAAAGGTTGTGCCTGTTGAA+TGG | + | chr5.2:27467088-27467107 | MS.gene33291:CDS | 40.0% | |
| AAAGGATATGGCCATTCAAC+AGG | - | chr5.2:27467102-27467121 | None:intergenic | 40.0% | |
| AATAATTTCCCCTCGGCAAA+AGG | - | chr5.2:27467120-27467139 | None:intergenic | 40.0% | |
| ACCATATTACTGTAGATGGG+AGG | + | chr5.2:27467172-27467191 | MS.gene33291:CDS | 40.0% | |
| ACCGTAGCCATATGTGAATA+CGG | + | chr5.2:27467936-27467955 | MS.gene33291:CDS | 40.0% | |
| ACTTACCCCGTATTCACATA+TGG | - | chr5.2:27467946-27467965 | None:intergenic | 40.0% | |
| AGCAATTCAAGATGCATCTG+AGG | - | chr5.2:27467538-27467557 | None:intergenic | 40.0% | |
| ATGATAATCGATCGGAAGAG+TGG | + | chr5.2:27467028-27467047 | MS.gene33291:CDS | 40.0% | |
| CACATCGACATCTCCATTTA+TGG | - | chr5.2:27467467-27467486 | None:intergenic | 40.0% | |
| CATATGATAGCATGGAAGGA+AGG | + | chr5.2:27467821-27467840 | MS.gene33291:intron | 40.0% | |
| CTACGGTCTTCAAAACAACA+AGG | - | chr5.2:27467923-27467942 | None:intergenic | 40.0% | |
| GACAGGTGAAATGTGAGAAA+TGG | + | chr5.2:27466995-27467014 | MS.gene33291:CDS | 40.0% | |
| GCTACTGGACTATCCATAAA+TGG | + | chr5.2:27467451-27467470 | MS.gene33291:CDS | 40.0% | |
| TGCATCTTGAATTGCTTCCT+CGG | + | chr5.2:27467542-27467561 | MS.gene33291:CDS | 40.0% | |
| TTTGTTCTCACCATAAGTGC+TGG | + | chr5.2:27467138-27467157 | MS.gene33291:CDS | 40.0% | |
| !!! | CGATTTTTTGCAGATACGCT+CGG | + | chr5.2:27468045-27468064 | MS.gene33291:intron | 40.0% |
| !!! | CTTTTGGTTTTTCTGCGTTC+TGG | + | chr5.2:27468243-27468262 | MS.gene33291:intron | 40.0% |
| AATCCTCACATGTTGTGGCT+CGG | + | chr5.2:27467686-27467705 | MS.gene33291:CDS | 45.0% | |
| ATCTTGAATTGCTTCCTCGG+TGG | + | chr5.2:27467545-27467564 | MS.gene33291:CDS | 45.0% | |
| ATGGTGGTTGAACAGACTGA+TGG | + | chr5.2:27467059-27467078 | MS.gene33291:CDS | 45.0% | |
| CAATGAGCTGAAGTTCTACC+CGG | + | chr5.2:27468386-27468405 | MS.gene33291:intron | 45.0% | |
| CCCGTATTCACATATGGCTA+CGG | - | chr5.2:27467940-27467959 | None:intergenic | 45.0% | |
| CCGTAGCCATATGTGAATAC+GGG | + | chr5.2:27467937-27467956 | MS.gene33291:CDS | 45.0% | |
| CGTAGCCATATGTGAATACG+GGG | + | chr5.2:27467938-27467957 | MS.gene33291:CDS | 45.0% | |
| GAAGCGAGAGAAGTTCAAAC+TGG | + | chr5.2:27468133-27468152 | MS.gene33291:CDS | 45.0% | |
| GAGTATCCTCCCTATGCTAA+TGG | + | chr5.2:27468559-27468578 | MS.gene33291:CDS | 45.0% | |
| GCCTCCCATCTACAGTAATA+TGG | - | chr5.2:27467176-27467195 | None:intergenic | 45.0% | |
| GTGAATACGGGGTAAGTGAT+TGG | + | chr5.2:27467949-27467968 | MS.gene33291:intron | 45.0% | |
| TAACCCGGACCATTAGCATA+GGG | - | chr5.2:27468571-27468590 | None:intergenic | 45.0% | |
| TAATCGATCGGAAGAGTGGA+AGG | + | chr5.2:27467032-27467051 | MS.gene33291:CDS | 45.0% | |
| TCAGATGAGACGATGTAACC+CGG | - | chr5.2:27468586-27468605 | None:intergenic | 45.0% | |
| TGGTGGTTGAACAGACTGAT+GGG | + | chr5.2:27467060-27467079 | MS.gene33291:CDS | 45.0% | |
| TTCAGCAAAATGGTTGCCAG+CGG | - | chr5.2:27467623-27467642 | None:intergenic | 45.0% | |
| TTTGCTCTTGAGGATGCTAC+TGG | + | chr5.2:27467436-27467455 | MS.gene33291:CDS | 45.0% | |
| ! | CAACCATTTTGCTGAACGGA+TGG | + | chr5.2:27467627-27467646 | MS.gene33291:CDS | 45.0% |
| ! | CTGGCAACCATTTTGCTGAA+CGG | + | chr5.2:27467623-27467642 | MS.gene33291:CDS | 45.0% |
| ! | GTGAACGTCGAGCTTTTCAT+CGG | + | chr5.2:27467589-27467608 | MS.gene33291:CDS | 45.0% |
| !! | GAAATGGGCTGTAACTTACG+AGG | + | chr5.2:27468210-27468229 | MS.gene33291:CDS | 45.0% |
| !!! | TTTTTTGCAGATACGCTCGG+TGG | + | chr5.2:27468048-27468067 | MS.gene33291:intron | 45.0% |
| !!! | ATAATGATTTTTTATATTAT+AGG | + | chr5.2:27468290-27468309 | MS.gene33291:intron | 5.0% |
| !!! | ATTTTTTTTATCATTATTTA+GGG | - | chr5.2:27467753-27467772 | None:intergenic | 5.0% |
| AAACCGAGCCACAACATGTG+AGG | - | chr5.2:27467692-27467711 | None:intergenic | 50.0% | |
| ACCACAAGCCTCTTCGTGAT+GGG | + | chr5.2:27468188-27468207 | MS.gene33291:CDS | 50.0% | |
| ACCTTCCAAGCCAGCACTTA+TGG | - | chr5.2:27467151-27467170 | None:intergenic | 50.0% | |
| ACGTTCACGTCGAGAATAGG+TGG | - | chr5.2:27467577-27467596 | None:intergenic | 50.0% | |
| ACTCACTGTGCGATACGGAA+AGG | - | chr5.2:27467208-27467227 | None:intergenic | 50.0% | |
| AGATGCAGCCTCTCTTACCA+AGG | - | chr5.2:27467722-27467741 | None:intergenic | 50.0% | |
| AGCGTACTCACTGTGCGATA+CGG | - | chr5.2:27467213-27467232 | None:intergenic | 50.0% | |
| CAAAATGGTTGCCAGCGGAA+AGG | - | chr5.2:27467618-27467637 | None:intergenic | 50.0% | |
| CAGACTGATGGGGCGAAAAA+AGG | + | chr5.2:27467071-27467090 | MS.gene33291:CDS | 50.0% | |
| CTGCCATCCGTTCAGCAAAA+TGG | - | chr5.2:27467633-27467652 | None:intergenic | 50.0% | |
| GCAAAGCTAGGATGTGACGT+AGG | - | chr5.2:27467514-27467533 | None:intergenic | 50.0% | |
| GCTAGGATGTGACGTAGGTA+AGG | - | chr5.2:27467509-27467528 | None:intergenic | 50.0% | |
| GGTGGTTGAACAGACTGATG+GGG | + | chr5.2:27467061-27467080 | MS.gene33291:CDS | 50.0% | |
| GTAACCCGGACCATTAGCAT+AGG | - | chr5.2:27468572-27468591 | None:intergenic | 50.0% | |
| TACGGGGTAAGTGATTGGAG+AGG | + | chr5.2:27467954-27467973 | MS.gene33291:intron | 50.0% | |
| TCCTCCCTATGCTAATGGTC+CGG | + | chr5.2:27468564-27468583 | MS.gene33291:CDS | 50.0% | |
| TCGACGTTCACGTCGAGAAT+AGG | - | chr5.2:27467580-27467599 | None:intergenic | 50.0% | |
| TGAATTGCTTCCTCGGTGGA+AGG | + | chr5.2:27467549-27467568 | MS.gene33291:CDS | 50.0% | |
| TGCATCTGAGGAGCAAAGCT+AGG | - | chr5.2:27467526-27467545 | None:intergenic | 50.0% | |
| TTCATCGGTATCCTTTCCGC+TGG | + | chr5.2:27467604-27467623 | MS.gene33291:CDS | 50.0% | |
| TTCCCCTCGGCAAAAGGATA+TGG | - | chr5.2:27467114-27467133 | None:intergenic | 50.0% | |
| TTTGCAGGGCTTTGCTCTTG+AGG | + | chr5.2:27467426-27467445 | MS.gene33291:intron | 50.0% | |
| ! | AGCCTCTTCGTGATGGGAAA+TGG | + | chr5.2:27468194-27468213 | MS.gene33291:CDS | 50.0% |
| ! | ATGGCCATATCCTTTTGCCG+AGG | + | chr5.2:27467107-27467126 | MS.gene33291:CDS | 50.0% |
| ! | GCCTCTTCGTGATGGGAAAT+GGG | + | chr5.2:27468195-27468214 | MS.gene33291:CDS | 50.0% |
| ! | TGGCCATATCCTTTTGCCGA+GGG | + | chr5.2:27467108-27467127 | MS.gene33291:CDS | 50.0% |
| ! | TTTCGTGGCCTTGGTAAGAG+AGG | + | chr5.2:27467711-27467730 | MS.gene33291:intron | 50.0% |
| !! | ACCATAAGTGCTGGCTTGGA+AGG | + | chr5.2:27467147-27467166 | MS.gene33291:CDS | 50.0% |
| !! | TCTCACCATAAGTGCTGGCT+TGG | + | chr5.2:27467143-27467162 | MS.gene33291:CDS | 50.0% |
| !!! | GGTTTTTCTGCGTTCTGGAG+TGG | + | chr5.2:27468248-27468267 | MS.gene33291:intron | 50.0% |
| !!! | TGTTGTGGCTCGGTTTTTCG+TGG | + | chr5.2:27467696-27467715 | MS.gene33291:CDS | 50.0% |
| AAGAGTGGAAGGCGACATGG+TGG | + | chr5.2:27467043-27467062 | MS.gene33291:CDS | 55.0% | |
| CACCACAAGCCTCTTCGTGA+TGG | + | chr5.2:27468187-27468206 | MS.gene33291:CDS | 55.0% | |
| CATCACGAAGAGGCTTGTGG+TGG | - | chr5.2:27468189-27468208 | None:intergenic | 55.0% | |
| CCTCCCTATGCTAATGGTCC+GGG | + | chr5.2:27468565-27468584 | MS.gene33291:CDS | 55.0% | |
| GCCCATTTCCCATCACGAAG+AGG | - | chr5.2:27468199-27468218 | None:intergenic | 55.0% | |
| GGATGGCAGTGAGGAAGTCA+TGG | + | chr5.2:27467644-27467663 | MS.gene33291:CDS | 55.0% | |
| TCCCATCACGAAGAGGCTTG+TGG | - | chr5.2:27468192-27468211 | None:intergenic | 55.0% | |
| TTGCTGAACGGATGGCAGTG+AGG | + | chr5.2:27467635-27467654 | MS.gene33291:CDS | 55.0% | |
| ! | GGCCATATCCTTTTGCCGAG+GGG | + | chr5.2:27467109-27467128 | MS.gene33291:CDS | 55.0% |
| ATAGGTGGTGCCTTCCACCG+AGG | - | chr5.2:27467562-27467581 | None:intergenic | 60.0% | |
| CCCGGACCATTAGCATAGGG+AGG | - | chr5.2:27468568-27468587 | None:intergenic | 60.0% | |
| CGGAAGAGTGGAAGGCGACA+TGG | + | chr5.2:27467040-27467059 | MS.gene33291:CDS | 60.0% | |
| !! | GGCTCGGTTTTTCGTGGCCT+TGG | + | chr5.2:27467702-27467721 | MS.gene33291:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 27466989 | 27468809 | 27466989 | ID=MS.gene33291 |
| chr5.2 | mRNA | 27466989 | 27468809 | 27466989 | ID=MS.gene33291.t1;Parent=MS.gene33291 |
| chr5.2 | exon | 27466989 | 27467221 | 27466989 | ID=MS.gene33291.t1.exon1;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27466989 | 27467221 | 27466989 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| chr5.2 | exon | 27467433 | 27467723 | 27467433 | ID=MS.gene33291.t1.exon2;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27467433 | 27467723 | 27467433 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| chr5.2 | exon | 27467831 | 27467959 | 27467831 | ID=MS.gene33291.t1.exon3;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27467831 | 27467959 | 27467831 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| chr5.2 | exon | 27468058 | 27468231 | 27468058 | ID=MS.gene33291.t1.exon4;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27468058 | 27468231 | 27468058 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| chr5.2 | exon | 27468544 | 27468651 | 27468544 | ID=MS.gene33291.t1.exon5;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27468544 | 27468651 | 27468544 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| chr5.2 | exon | 27468783 | 27468809 | 27468783 | ID=MS.gene33291.t1.exon6;Parent=MS.gene33291.t1 |
| chr5.2 | CDS | 27468783 | 27468809 | 27468783 | ID=cds.MS.gene33291.t1;Parent=MS.gene33291.t1 |
| Gene Sequence |
| Protein sequence |
