AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33660.t1 MTR_3g089045 96.246 293 10 1 1 293 1 292 0.0 578
MS.gene33660.t1 MTR_4g082040 41.945 329 142 9 11 291 100 427 4.04e-68 218
MS.gene33660.t1 MTR_6g074860 58.989 178 67 4 14 187 2 177 4.95e-66 207
MS.gene33660.t1 MTR_5g041570 79.508 122 24 1 14 134 132 253 1.34e-65 212
MS.gene33660.t1 MTR_7g086960 41.234 308 144 6 1 293 71 356 4.53e-62 200
MS.gene33660.t1 MTR_6g027370 41.869 289 123 10 10 289 93 345 1.59e-53 178
MS.gene33660.t1 MTR_6g027340 47.674 172 87 1 16 187 16 184 1.90e-49 163
MS.gene33660.t1 MTR_6g027360 51.678 149 69 1 16 164 78 223 1.94e-48 164
MS.gene33660.t1 MTR_4g019370 62.376 101 38 0 16 116 38 138 2.93e-42 149
MS.gene33660.t1 MTR_5g016510 56.436 101 44 0 16 116 5 105 2.00e-37 135
MS.gene33660.t1 MTR_3g101290 57.426 101 43 0 16 116 37 137 4.09e-37 132
MS.gene33660.t1 MTR_5g082910 51.402 107 52 0 4 110 7 113 1.03e-35 130
MS.gene33660.t1 MTR_4g094982 55.446 101 45 0 16 116 5 105 1.07e-35 129
MS.gene33660.t1 MTR_6g015455 51.695 118 50 1 16 133 5 115 3.95e-35 134
MS.gene33660.t1 MTR_7g061330 53.465 101 47 0 16 116 113 213 7.86e-32 124
MS.gene33660.t1 MTR_7g461410 53.465 101 47 0 16 116 113 213 7.86e-32 124
MS.gene33660.t1 MTR_3g463400 50.435 115 54 1 13 127 130 241 1.31e-31 122
MS.gene33660.t1 MTR_5g070020 40.361 166 85 2 6 165 112 269 1.41e-31 120
MS.gene33660.t1 MTR_7g061330 53.465 101 47 0 16 116 77 177 1.68e-31 123
MS.gene33660.t1 MTR_5g049190 52.336 107 48 1 16 122 19 122 3.14e-31 117
MS.gene33660.t1 MTR_4g105660 32.472 271 155 8 16 286 180 422 1.17e-30 119
MS.gene33660.t1 MTR_3g110028 49.505 101 51 0 16 116 85 185 1.48e-30 121
MS.gene33660.t1 MTR_1g026870 49.505 101 51 0 16 116 85 185 2.59e-30 120
MS.gene33660.t1 MTR_7g037260 48.673 113 57 1 16 128 145 256 9.63e-29 113
MS.gene33660.t1 MTR_7g451170 48.673 113 57 1 16 128 191 302 1.41e-28 113
MS.gene33660.t1 MTR_3g077650 47.368 114 57 1 16 129 181 291 1.48e-27 111
MS.gene33660.t1 MTR_1g100667 43.590 117 63 2 16 130 15 130 2.71e-27 107
MS.gene33660.t1 MTR_5g010650 52.174 92 44 0 19 110 113 204 7.07e-27 109
MS.gene33660.t1 MTR_0008s0390 49.515 103 49 2 16 116 15 116 1.24e-26 105
MS.gene33660.t1 MTR_6g055910 38.346 133 79 2 16 146 16 147 1.29e-26 105
MS.gene33660.t1 MTR_2g067420 50.485 103 48 2 10 110 10 111 1.64e-26 106
MS.gene33660.t1 MTR_4g100720 36.879 141 75 2 16 142 15 155 1.75e-26 102
MS.gene33660.t1 MTR_4g088015 47.664 107 53 1 16 122 221 324 2.33e-26 107
MS.gene33660.t1 MTR_0008s0470 40.268 149 76 4 16 152 15 162 3.33e-26 105
MS.gene33660.t1 MTR_2g089450 45.370 108 56 2 10 115 8 114 3.52e-26 103
MS.gene33660.t1 MTR_8g017440 42.222 135 68 3 16 148 14 140 5.57e-26 105
MS.gene33660.t1 MTR_2g064160 49.515 103 49 2 16 116 13 114 5.65e-26 104
MS.gene33660.t1 MTR_1g076150 43.966 116 62 2 16 129 14 128 6.78e-26 103
MS.gene33660.t1 MTR_3g074520 46.789 109 55 2 10 116 8 115 7.35e-26 105
MS.gene33660.t1 MTR_0251s0050 48.544 103 50 2 16 116 15 116 9.14e-26 103
MS.gene33660.t1 MTR_7g037130 50.000 96 48 0 16 111 145 240 1.29e-25 104
MS.gene33660.t1 MTR_3g461490 47.573 103 51 2 16 116 14 115 1.48e-25 103
MS.gene33660.t1 MTR_5g042030 45.098 102 55 1 16 116 9 110 1.86e-25 102
MS.gene33660.t1 MTR_7g035350 50.000 92 46 0 19 110 228 319 1.91e-25 105
MS.gene33660.t1 MTR_8g060940 45.794 107 57 1 9 114 2 108 2.60e-25 101
MS.gene33660.t1 MTR_7g115650 46.078 102 54 1 16 116 14 115 3.06e-25 100
MS.gene33660.t1 MTR_0008s0280 44.660 103 54 2 10 110 8 109 3.21e-25 100
MS.gene33660.t1 MTR_4g105130 43.925 107 57 2 16 120 14 119 4.29e-25 103
MS.gene33660.t1 MTR_7g110830 44.860 107 56 2 16 120 14 119 4.32e-25 103
MS.gene33660.t1 MTR_2g089420 44.037 109 58 2 10 116 7 114 5.58e-25 103
MS.gene33660.t1 MTR_8g098860 46.729 107 54 2 16 120 14 119 8.72e-25 101
MS.gene33660.t1 MTR_5g010020 52.083 96 43 2 16 109 14 108 8.90e-25 102
MS.gene33660.t1 MTR_5g062790 44.915 118 55 5 4 118 2 112 1.36e-24 100
MS.gene33660.t1 MTR_8g017540 42.975 121 66 2 16 134 60 179 1.67e-24 102
MS.gene33660.t1 MTR_5g079220 41.667 108 62 1 11 117 18 125 1.73e-24 100
MS.gene33660.t1 MTR_1g085640 43.925 107 57 2 16 120 14 119 1.96e-24 101
MS.gene33660.t1 MTR_3g052450 42.342 111 63 1 10 119 36 146 2.07e-24 102
MS.gene33660.t1 MTR_1g085040 43.396 106 57 2 16 119 14 118 2.21e-24 101
MS.gene33660.t1 MTR_1g100653 45.283 106 55 2 16 119 14 118 3.15e-24 99.8
MS.gene33660.t1 MTR_1g021230 43.307 127 64 3 16 140 59 179 3.49e-24 101
MS.gene33660.t1 MTR_0063s0090 39.844 128 65 4 10 134 8 126 3.49e-24 97.8
MS.gene33660.t1 MTR_3g077110 44.860 107 56 2 16 120 14 119 3.50e-24 100
MS.gene33660.t1 MTR_5g079670 45.872 109 56 2 10 116 7 114 4.10e-24 97.4
MS.gene33660.t1 MTR_5g029840 43.519 108 60 1 10 116 8 115 4.72e-24 100
MS.gene33660.t1 MTR_1g112760 43.925 107 57 2 16 120 15 120 5.48e-24 97.4
MS.gene33660.t1 MTR_1g043080 44.860 107 56 2 12 116 10 115 6.58e-24 97.8
MS.gene33660.t1 MTR_3g052430 43.810 105 58 1 16 119 43 147 7.07e-24 101
MS.gene33660.t1 MTR_8g095390 45.098 102 55 1 16 116 14 115 7.17e-24 99.0
MS.gene33660.t1 MTR_8g017500 38.000 150 83 3 16 163 14 155 7.81e-24 99.8
MS.gene33660.t1 MTR_2g099740 48.544 103 50 2 16 116 14 115 8.30e-24 100
MS.gene33660.t1 MTR_5g078910 42.202 109 62 1 9 116 2 110 8.32e-24 98.6
MS.gene33660.t1 MTR_7g076740 36.970 165 87 5 10 171 8 158 1.04e-23 98.6
MS.gene33660.t1 MTR_5g078860 42.202 109 62 1 9 116 2 110 1.07e-23 98.6
MS.gene33660.t1 MTR_5g078800 41.284 109 63 1 9 116 2 110 1.11e-23 97.4
MS.gene33660.t1 MTR_5g079290 40.909 110 64 1 9 117 12 121 1.39e-23 97.4
MS.gene33660.t1 MTR_4g073420 46.602 103 52 2 16 116 14 115 1.46e-23 97.8
MS.gene33660.t1 MTR_5g007370 42.478 113 62 2 6 116 4 115 1.62e-23 97.8
MS.gene33660.t1 MTR_7g017260 40.541 111 63 1 9 116 20 130 1.70e-23 97.4
MS.gene33660.t1 MTR_8g017390 35.025 197 104 6 16 188 14 210 1.70e-23 100
MS.gene33660.t1 MTR_3g097450 45.631 103 53 2 16 116 14 115 2.08e-23 97.4
MS.gene33660.t1 MTR_7g111290 47.423 97 48 2 16 110 14 109 2.25e-23 99.0
MS.gene33660.t1 MTR_4g063100 47.706 109 53 3 16 122 9 115 2.29e-23 96.7
MS.gene33660.t1 MTR_8g042410 41.129 124 70 2 16 137 39 161 2.44e-23 100
MS.gene33660.t1 MTR_2g011660 42.105 114 63 2 5 116 4 116 2.56e-23 98.2
MS.gene33660.t1 MTR_8g027345 40.909 110 64 1 16 124 14 123 2.85e-23 97.1
MS.gene33660.t1 MTR_5g088610 41.406 128 65 5 4 129 2 121 2.87e-23 98.2
MS.gene33660.t1 MTR_1g057980 40.708 113 65 1 16 128 80 190 4.08e-23 96.7
MS.gene33660.t1 MTR_4g478180 44.037 109 58 2 10 116 9 116 4.49e-23 97.4
MS.gene33660.t1 MTR_0001s0360 42.157 102 58 1 16 116 9 110 4.74e-23 95.5
MS.gene33660.t1 MTR_6g009430 42.593 108 61 1 10 116 8 115 5.45e-23 97.1
MS.gene33660.t1 MTR_8g017340 48.544 103 51 1 16 116 14 116 5.63e-23 98.6
MS.gene33660.t1 MTR_5g078950 41.748 103 59 1 9 110 2 104 5.71e-23 95.5
MS.gene33660.t1 MTR_1g062940 42.520 127 68 4 16 138 8 133 6.04e-23 94.4
MS.gene33660.t1 MTR_7g450950 44.444 99 55 0 11 109 152 250 7.27e-23 96.7
MS.gene33660.t1 MTR_4g065017 42.593 108 59 2 16 121 19 125 7.42e-23 96.7
MS.gene33660.t1 MTR_5g014990 40.833 120 63 3 10 127 8 121 7.60e-23 96.3
MS.gene33660.t1 MTR_4g091490 43.750 112 60 2 7 116 6 116 8.09e-23 97.1
MS.gene33660.t1 MTR_1g083630 39.669 121 68 2 4 123 2 118 8.34e-23 98.6
MS.gene33660.t1 MTR_3g103570 40.367 109 63 2 10 116 8 116 1.04e-22 96.7
MS.gene33660.t1 MTR_8g031360 47.115 104 51 3 16 116 15 117 1.10e-22 95.5
MS.gene33660.t1 MTR_7g117730 40.367 109 64 1 16 123 14 122 1.77e-22 94.4
MS.gene33660.t1 MTR_4g057635 42.202 109 61 2 10 116 8 116 2.46e-22 95.1
MS.gene33660.t1 MTR_4g097570 37.984 129 73 3 10 131 8 136 2.70e-22 94.4
MS.gene33660.t1 MTR_3g083540 42.157 102 58 1 16 116 43 144 3.43e-22 94.4
MS.gene33660.t1 MTR_8g006470 47.619 105 53 2 7 109 3 107 3.62e-22 94.0
MS.gene33660.t1 MTR_5g088080 42.342 111 56 4 10 118 11 115 3.88e-22 93.6
MS.gene33660.t1 MTR_5g088150 42.342 111 56 4 10 118 11 115 3.88e-22 93.6
MS.gene33660.t1 MTR_5g488210 42.342 111 56 4 10 118 11 115 3.88e-22 93.6
MS.gene33660.t1 MTR_1g017140 40.367 109 63 2 10 116 8 116 4.19e-22 94.7
MS.gene33660.t1 MTR_5g088640 42.342 111 56 4 10 118 11 115 4.64e-22 93.6
MS.gene33660.t1 MTR_5g488170 42.342 111 56 4 10 118 11 115 5.34e-22 92.4
MS.gene33660.t1 MTR_1g086530 40.870 115 65 2 7 119 26 139 5.45e-22 93.2
MS.gene33660.t1 MTR_8g020490 40.000 110 65 1 12 120 6 115 5.95e-22 92.8
MS.gene33660.t1 MTR_2g097910 41.121 107 62 1 16 121 22 128 6.15e-22 94.0
MS.gene33660.t1 MTR_8g017350 47.573 103 52 1 16 116 14 116 6.24e-22 95.9
MS.gene33660.t1 MTR_7g096930 43.137 102 57 1 16 116 14 115 6.29e-22 93.2
MS.gene33660.t1 MTR_7g010210 39.640 111 66 1 10 119 8 118 6.34e-22 94.0
MS.gene33660.t1 MTR_1g043050 41.284 109 61 2 10 116 8 115 6.65e-22 92.4
MS.gene33660.t1 MTR_4g125520 39.048 105 63 1 16 119 14 118 7.53e-22 93.6
MS.gene33660.t1 MTR_0197s0010 45.000 100 52 2 19 116 6 104 7.73e-22 91.7
MS.gene33660.t1 MTR_7g010210 39.640 111 66 1 10 119 8 118 8.91e-22 92.4
MS.gene33660.t1 MTR_2g096380 38.255 149 81 5 16 162 8 147 1.48e-21 91.3
MS.gene33660.t1 MTR_3g028740 44.762 105 55 2 16 118 24 127 1.55e-21 93.2
MS.gene33660.t1 MTR_3g011610 43.810 105 56 2 16 118 39 142 1.82e-21 94.4
MS.gene33660.t1 MTR_1g110460 39.130 115 69 1 16 129 28 142 1.86e-21 92.4
MS.gene33660.t1 MTR_4g097570 37.500 128 74 3 10 131 8 135 2.38e-21 91.7
MS.gene33660.t1 MTR_1g073170 42.857 105 57 2 16 118 22 125 2.51e-21 90.9
MS.gene33660.t1 MTR_4g485530 42.157 102 58 1 16 116 14 115 2.80e-21 89.4
MS.gene33660.t1 MTR_2g095520 41.346 104 59 2 10 111 8 111 3.57e-21 91.7
MS.gene33660.t1 MTR_2g089620 42.202 109 60 2 10 116 8 115 3.67e-21 92.0
MS.gene33660.t1 MTR_1g017000 41.284 109 62 2 10 116 8 116 3.90e-21 90.5
MS.gene33660.t1 MTR_0247s0040 42.574 101 57 1 10 109 3 103 5.43e-21 88.2
MS.gene33660.t1 MTR_5g079120 38.596 114 69 1 9 121 56 169 8.37e-21 90.5
MS.gene33660.t1 MTR_6g055910 39.048 105 63 1 42 146 15 118 9.04e-21 89.4
MS.gene33660.t1 MTR_1g045610 44.762 105 55 2 16 118 23 126 9.12e-21 89.7
MS.gene33660.t1 MTR_6g090405 42.202 109 61 2 10 116 8 116 9.39e-21 89.4
MS.gene33660.t1 MTR_7g102110 38.532 109 65 2 10 116 8 116 1.14e-20 89.7
MS.gene33660.t1 MTR_4g082230 39.216 102 61 1 16 116 14 115 1.30e-20 91.3
MS.gene33660.t1 MTR_6g012690 39.450 109 63 2 10 116 8 115 1.36e-20 90.9
MS.gene33660.t1 MTR_0140s0030 43.137 102 57 1 16 116 15 116 1.48e-20 90.1
MS.gene33660.t1 MTR_0489s0020 43.137 102 57 1 16 116 15 116 1.48e-20 90.1
MS.gene33660.t1 MTR_2g088170 45.378 119 61 3 3 118 17 134 1.53e-20 91.3
MS.gene33660.t1 MTR_4g082290 41.748 103 57 2 16 116 14 115 1.88e-20 90.9
MS.gene33660.t1 MTR_7g011170 41.176 102 59 1 16 116 14 115 1.90e-20 89.7
MS.gene33660.t1 MTR_4g121460 38.333 120 68 2 16 134 14 128 2.47e-20 89.7
MS.gene33660.t1 MTR_4g128670 41.346 104 59 2 10 111 8 111 3.96e-20 89.4
MS.gene33660.t1 MTR_5g078930 40.952 105 61 1 19 122 14 118 4.92e-20 86.7
MS.gene33660.t1 MTR_6g012180 39.806 103 61 1 10 111 8 110 6.09e-20 88.2
MS.gene33660.t1 MTR_1g086510 34.328 134 87 1 1 133 8 141 7.03e-20 87.4
MS.gene33660.t1 MTR_7g035075 40.323 124 68 3 2 122 5 125 1.08e-19 85.5
MS.gene33660.t1 MTR_4g029540 45.714 105 55 2 16 118 12 116 1.12e-19 87.4
MS.gene33660.t1 MTR_4g102380 43.689 103 55 2 16 116 14 115 1.48e-19 86.7
MS.gene33660.t1 MTR_7g087130 41.176 102 59 1 16 116 14 115 2.32e-19 87.0
MS.gene33660.t1 MTR_0193s0090 37.190 121 68 2 10 122 3 123 3.20e-19 84.3
MS.gene33660.t1 MTR_3g039990 39.048 105 63 1 16 119 15 119 4.24e-19 85.9
MS.gene33660.t1 MTR_3g045430 39.474 114 66 3 5 116 4 116 4.85e-19 85.5
MS.gene33660.t1 MTR_3g065440 39.823 113 65 2 10 120 8 119 5.83e-19 85.5
MS.gene33660.t1 MTR_2g034790 39.216 102 61 1 16 116 14 115 1.14e-18 85.1
MS.gene33660.t1 MTR_5g078140 40.179 112 64 2 10 119 8 118 1.74e-18 84.3
MS.gene33660.t1 MTR_6g006030 39.496 119 68 3 16 132 16 132 2.17e-18 82.0
MS.gene33660.t1 MTR_7g061550 40.187 107 61 1 16 119 7 113 2.28e-18 84.3
MS.gene33660.t1 MTR_4g063100 52.703 74 34 1 49 122 14 86 4.74e-18 81.3
MS.gene33660.t1 MTR_2g033170 34.646 127 82 1 8 133 18 144 3.47e-17 80.9
MS.gene33660.t1 MTR_4g123040 34.884 129 83 1 6 133 16 144 4.21e-17 80.5
MS.gene33660.t1 MTR_5g038910 34.921 126 69 2 19 144 29 141 5.04e-17 80.9
MS.gene33660.t1 MTR_8g468380 35.714 98 63 0 19 116 25 122 6.00e-17 80.9
MS.gene33660.t1 MTR_5g038910 34.921 126 69 2 19 144 29 141 6.94e-17 80.9
MS.gene33660.t1 MTR_2g096380 38.596 114 62 3 49 162 23 128 1.21e-16 77.4
MS.gene33660.t1 MTR_7g109320 43.137 102 57 1 16 116 14 115 2.94e-16 78.2
MS.gene33660.t1 MTR_7g111290 51.613 62 30 0 49 110 6 67 4.65e-16 77.8
MS.gene33660.t1 MTR_4g128190 35.833 120 61 4 5 123 2 106 8.81e-16 75.5
MS.gene33660.t1 MTR_1g008970 47.692 65 34 0 42 106 117 181 3.76e-15 73.9
MS.gene33660.t1 MTR_1g085880 38.136 118 67 4 6 120 3 117 1.17e-13 68.6
MS.gene33660.t1 MTR_1g085770 38.136 118 67 4 6 120 3 117 3.04e-13 69.3
MS.gene33660.t1 MTR_5g007300 41.333 75 43 1 16 89 66 140 1.19e-12 64.7
MS.gene33660.t1 MTR_6g080360 35.870 92 58 1 18 109 481 571 2.46e-12 67.8
MS.gene33660.t1 MTR_6g080360 33.333 120 69 3 14 123 526 644 3.25e-11 64.3
MS.gene33660.t1 MTR_6g080360 36.264 91 57 1 19 109 262 351 4.32e-12 67.0
MS.gene33660.t1 MTR_6g080360 33.333 120 69 3 14 123 306 424 7.71e-11 63.2
MS.gene33660.t1 MTR_7g115550 38.824 85 51 1 17 101 8 91 1.23e-11 65.5
MS.gene33660.t1 MTR_7g115550 34.021 97 63 1 17 113 8 103 1.25e-11 65.5
MS.gene33660.t1 MTR_0023s0210 33.735 83 54 1 8 89 1 83 4.16e-11 58.5
MS.gene33660.t1 MTR_6g055910 32.895 76 51 0 71 146 2 77 5.73e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33660.t1 AT1G17950 44.330 291 103 6 14 293 3 245 5.00e-68 212
MS.gene33660.t1 AT1G69560 84.404 109 17 0 13 121 104 212 5.08e-64 204
MS.gene33660.t1 AT1G69560 84.404 109 17 0 13 121 120 228 6.12e-64 205
MS.gene33660.t1 AT4G33450 41.639 305 108 7 1 292 3 250 9.09e-64 201
MS.gene33660.t1 AT1G73410 85.321 109 16 0 14 122 4 112 4.62e-63 199
MS.gene33660.t1 AT1G73410 85.321 109 16 0 14 122 4 112 9.22e-63 197
MS.gene33660.t1 AT1G26780 78.947 114 24 0 16 129 98 211 1.32e-62 199
MS.gene33660.t1 AT1G26780 78.947 114 24 0 16 129 98 211 6.73e-62 200
MS.gene33660.t1 AT5G17800 76.991 113 26 0 10 122 87 199 1.09e-60 196
MS.gene33660.t1 AT3G29020 72.973 111 30 0 11 121 60 170 4.07e-58 186
MS.gene33660.t1 AT3G29020 72.973 111 30 0 11 121 62 172 2.85e-57 186
MS.gene33660.t1 AT5G39700 58.407 113 47 0 9 121 49 161 6.37e-41 140
MS.gene33660.t1 AT5G67300 59.406 101 41 0 16 116 6 106 8.36e-38 136
MS.gene33660.t1 AT2G39880 52.941 119 56 0 5 123 39 157 8.51e-38 137
MS.gene33660.t1 AT3G50060 57.426 101 43 0 16 116 6 106 2.44e-37 134
MS.gene33660.t1 AT3G09230 57.426 101 43 0 16 116 55 155 1.27e-36 135
MS.gene33660.t1 AT3G55730 55.446 101 45 0 16 116 56 156 4.77e-36 133
MS.gene33660.t1 AT4G37260 50.459 109 54 0 16 124 13 121 8.54e-35 128
MS.gene33660.t1 AT2G23290 54.455 101 46 0 16 116 13 113 1.50e-34 127
MS.gene33660.t1 AT3G09370 55.446 101 45 0 16 116 130 230 2.81e-33 127
MS.gene33660.t1 AT3G09370 55.446 101 45 0 16 116 135 235 2.83e-33 127
MS.gene33660.t1 AT3G09370 55.446 101 45 0 16 116 143 243 4.20e-33 127
MS.gene33660.t1 AT5G11510 49.505 101 51 0 16 116 81 181 7.54e-31 122
MS.gene33660.t1 AT5G11510 49.505 101 51 0 16 116 81 181 7.54e-31 122
MS.gene33660.t1 AT5G11510 49.505 101 51 0 16 116 81 181 7.54e-31 122
MS.gene33660.t1 AT5G11510 49.505 101 51 0 16 116 81 181 9.73e-31 122
MS.gene33660.t1 AT5G11510 49.505 101 51 0 16 116 81 181 1.04e-30 121
MS.gene33660.t1 AT5G58850 47.581 124 62 1 4 127 93 213 1.97e-30 119
MS.gene33660.t1 AT5G11050 47.407 135 67 2 12 146 101 231 2.90e-30 118
MS.gene33660.t1 AT5G02320 50.495 101 50 0 16 116 127 227 3.73e-30 119
MS.gene33660.t1 AT5G02320 50.495 101 50 0 16 116 127 227 3.73e-30 119
MS.gene33660.t1 AT5G02320 50.495 101 50 0 16 116 67 167 4.16e-30 119
MS.gene33660.t1 AT3G27785 38.462 156 92 2 13 168 186 337 1.04e-29 117
MS.gene33660.t1 AT5G40360 46.729 107 57 0 16 122 158 264 5.78e-29 114
MS.gene33660.t1 AT4G32730 47.525 101 53 0 16 116 87 187 7.51e-29 116
MS.gene33660.t1 AT4G32730 47.525 101 53 0 16 116 87 187 7.51e-29 116
MS.gene33660.t1 AT4G32730 47.525 101 53 0 16 116 87 187 7.51e-29 116
MS.gene33660.t1 AT4G32730 47.525 101 53 0 16 116 87 187 7.51e-29 116
MS.gene33660.t1 AT4G32730 47.525 101 53 0 16 116 87 187 8.10e-29 116
MS.gene33660.t1 AT5G14750 45.614 114 61 1 4 116 6 119 9.81e-29 109
MS.gene33660.t1 AT3G12720 51.402 107 49 2 16 120 24 129 1.71e-28 111
MS.gene33660.t1 AT5G40330 47.059 102 53 1 16 116 14 115 2.32e-27 106
MS.gene33660.t1 AT4G25560 41.429 140 61 3 16 135 12 150 3.54e-27 107
MS.gene33660.t1 AT1G18570 47.059 102 53 1 16 116 15 116 4.06e-27 108
MS.gene33660.t1 AT3G48920 47.368 114 51 3 16 122 20 131 5.71e-27 106
MS.gene33660.t1 AT4G18770 49.533 107 51 1 16 122 217 320 8.47e-27 108
MS.gene33660.t1 AT1G79180 46.789 109 55 2 10 116 10 117 2.03e-26 105
MS.gene33660.t1 AT4G26930 48.571 105 53 1 16 119 21 125 2.17e-26 107
MS.gene33660.t1 AT5G65230 45.133 113 59 2 6 116 4 115 3.66e-26 105
MS.gene33660.t1 AT3G27920 46.078 102 54 1 16 116 16 117 5.25e-26 102
MS.gene33660.t1 AT3G53200 46.729 107 54 2 16 120 11 116 1.23e-25 102
MS.gene33660.t1 AT5G10280 45.133 113 59 2 6 116 4 115 1.26e-25 104
MS.gene33660.t1 AT3G23250 45.098 102 55 1 16 116 14 115 1.46e-25 103
MS.gene33660.t1 AT4G00540 46.729 107 54 1 13 116 100 206 1.73e-25 105
MS.gene33660.t1 AT4G00540 46.729 107 54 1 13 116 98 204 3.67e-25 104
MS.gene33660.t1 AT3G12820 44.068 118 63 2 1 116 1 117 4.96e-25 100
MS.gene33660.t1 AT2G26950 42.857 112 60 2 12 122 14 122 5.06e-25 103
MS.gene33660.t1 AT2G25230 40.741 108 61 1 18 125 28 132 6.61e-25 100
MS.gene33660.t1 AT1G74080 48.421 95 48 1 16 109 14 108 8.12e-25 102
MS.gene33660.t1 AT3G13890 40.667 150 78 5 16 157 14 160 9.78e-25 102
MS.gene33660.t1 AT1G63910 48.113 106 52 2 16 119 14 118 9.98e-25 102
MS.gene33660.t1 AT4G17785 44.737 114 60 2 5 116 4 116 1.03e-24 102
MS.gene33660.t1 AT2G26960 44.167 120 64 2 2 118 6 125 1.07e-24 103
MS.gene33660.t1 AT4G17785 44.737 114 60 2 5 116 4 116 1.21e-24 102
MS.gene33660.t1 AT4G38620 47.573 103 51 2 16 116 14 115 1.61e-24 100
MS.gene33660.t1 AT4G01680 44.762 105 55 2 16 118 14 117 2.05e-24 99.0
MS.gene33660.t1 AT1G56160 44.037 109 58 2 10 116 10 117 2.21e-24 100
MS.gene33660.t1 AT2G32460 42.017 119 66 2 2 118 6 123 2.24e-24 102
MS.gene33660.t1 AT5G54230 45.098 102 55 1 16 116 14 115 2.36e-24 100
MS.gene33660.t1 AT4G05100 43.860 114 61 2 5 116 4 116 2.71e-24 100
MS.gene33660.t1 AT1G74430 43.119 109 59 2 10 116 8 115 2.87e-24 99.4
MS.gene33660.t1 AT5G52600 40.164 122 67 2 16 131 14 135 3.00e-24 97.4
MS.gene33660.t1 AT3G30210 44.643 112 59 2 13 122 26 136 3.94e-24 99.0
MS.gene33660.t1 AT4G01680 44.762 105 55 2 16 118 14 117 3.95e-24 100
MS.gene33660.t1 AT1G22640 47.573 103 51 2 16 116 14 115 4.85e-24 98.6
MS.gene33660.t1 AT5G60890 41.509 106 61 1 16 120 14 119 5.12e-24 99.4
MS.gene33660.t1 AT5G61420 43.396 106 59 1 16 120 14 119 6.02e-24 100
MS.gene33660.t1 AT3G11440 43.269 104 58 1 16 118 43 146 6.87e-24 101
MS.gene33660.t1 AT3G01140 44.037 109 58 2 10 116 8 115 7.55e-24 99.8
MS.gene33660.t1 AT5G06100 41.818 110 63 1 10 118 28 137 8.26e-24 100
MS.gene33660.t1 AT3G11440 43.269 104 58 1 16 118 43 146 9.28e-24 101
MS.gene33660.t1 AT3G11440 43.269 104 58 1 16 118 43 146 9.28e-24 101
MS.gene33660.t1 AT3G11440 43.269 104 58 1 16 118 43 146 9.28e-24 101
MS.gene33660.t1 AT3G61250 46.602 103 52 2 16 116 14 115 9.59e-24 98.6
MS.gene33660.t1 AT3G01140 44.037 109 58 2 10 116 51 158 1.12e-23 99.8
MS.gene33660.t1 AT5G06100 41.818 110 63 1 10 118 28 137 1.16e-23 100
MS.gene33660.t1 AT5G06100 41.818 110 63 1 10 118 28 137 1.16e-23 100
MS.gene33660.t1 AT5G06100 41.818 110 63 1 10 118 28 137 1.16e-23 100
MS.gene33660.t1 AT5G06100 41.818 110 63 1 10 118 28 137 1.16e-23 100
MS.gene33660.t1 AT3G13890 37.975 158 80 5 16 157 14 169 1.30e-23 99.4
MS.gene33660.t1 AT1G57560 44.660 103 54 2 16 116 14 115 1.55e-23 98.2
MS.gene33660.t1 AT1G35515 43.137 102 57 1 16 116 14 115 1.65e-23 95.9
MS.gene33660.t1 AT1G57560 44.660 103 54 2 16 116 14 115 1.68e-23 97.4
MS.gene33660.t1 AT2G31180 45.631 103 53 2 16 116 14 115 1.75e-23 96.7
MS.gene33660.t1 AT4G28110 42.593 108 61 1 10 116 8 115 1.94e-23 97.4
MS.gene33660.t1 AT5G56110 44.954 109 57 2 10 116 8 115 1.96e-23 98.2
MS.gene33660.t1 AT3G13540 42.991 107 60 1 16 121 25 131 2.04e-23 96.7
MS.gene33660.t1 AT1G18710 41.284 109 61 2 10 116 8 115 2.57e-23 96.7
MS.gene33660.t1 AT2G32460 45.714 105 54 2 16 118 8 111 2.89e-23 99.4
MS.gene33660.t1 AT3G02940 42.593 108 61 1 10 116 8 115 2.97e-23 97.4
MS.gene33660.t1 AT5G07700 45.098 102 55 1 16 116 14 115 3.37e-23 97.8
MS.gene33660.t1 AT5G07700 45.098 102 55 1 16 116 14 115 3.37e-23 97.8
MS.gene33660.t1 AT1G09540 43.925 107 57 2 16 120 14 119 3.86e-23 97.8
MS.gene33660.t1 AT5G26660 44.762 105 55 2 16 118 14 117 3.96e-23 97.8
MS.gene33660.t1 AT5G16770 42.593 108 61 1 10 116 8 115 4.81e-23 97.1
MS.gene33660.t1 AT5G16770 42.593 108 61 1 10 116 8 115 4.81e-23 97.1
MS.gene33660.t1 AT3G02940 42.593 108 61 1 10 116 8 115 5.08e-23 97.1
MS.gene33660.t1 AT3G02940 42.593 108 61 1 10 116 8 115 5.08e-23 97.1
MS.gene33660.t1 AT1G16490 42.241 116 64 2 10 123 10 124 6.41e-23 95.9
MS.gene33660.t1 AT2G16720 44.660 103 54 2 16 116 14 115 6.63e-23 95.5
MS.gene33660.t1 AT5G23000 44.037 109 59 2 10 116 8 116 6.95e-23 96.7
MS.gene33660.t1 AT5G07690 43.564 101 56 1 16 115 14 114 6.98e-23 96.7
MS.gene33660.t1 AT5G16770 42.593 108 61 1 10 116 8 115 7.41e-23 96.7
MS.gene33660.t1 AT5G16770 42.593 108 61 1 10 116 8 115 7.41e-23 96.7
MS.gene33660.t1 AT5G15310 41.667 108 62 1 10 116 8 115 9.44e-23 96.3
MS.gene33660.t1 AT5G12870 39.496 119 69 2 5 121 9 126 9.86e-23 95.5
MS.gene33660.t1 AT5G15310 41.667 108 62 1 10 116 8 115 1.02e-22 96.3
MS.gene33660.t1 AT5G57620 41.284 109 62 2 10 116 8 116 1.19e-22 96.3
MS.gene33660.t1 AT4G34990 45.631 103 53 2 16 116 14 115 1.23e-22 95.1
MS.gene33660.t1 AT4G09460 43.689 103 55 2 16 116 14 115 1.37e-22 94.0
MS.gene33660.t1 AT3G28470 45.545 101 54 1 10 109 8 108 1.50e-22 95.5
MS.gene33660.t1 AT1G06180 40.517 116 66 2 16 129 14 128 1.66e-22 94.0
MS.gene33660.t1 AT4G01680 40.171 117 55 2 16 118 14 129 1.98e-22 95.9
MS.gene33660.t1 AT4G21440 45.631 103 53 2 16 116 14 115 2.18e-22 95.5
MS.gene33660.t1 AT5G15310 41.667 108 62 1 10 116 8 115 2.26e-22 93.6
MS.gene33660.t1 AT5G55020 43.810 105 58 1 16 119 28 132 2.46e-22 97.1
MS.gene33660.t1 AT5G14340 44.762 105 55 2 16 118 26 129 2.77e-22 94.0
MS.gene33660.t1 AT1G34670 42.593 108 61 1 10 116 8 115 3.41e-22 95.5
MS.gene33660.t1 AT1G79180 35.616 146 60 2 10 121 10 155 3.97e-22 94.7
MS.gene33660.t1 AT3G49690 41.284 109 62 2 10 116 8 116 4.19e-22 94.4
MS.gene33660.t1 AT5G52260 47.573 103 51 2 16 116 14 115 6.08e-22 93.2
MS.gene33660.t1 AT3G46130 44.037 109 58 2 16 122 11 118 6.91e-22 92.8
MS.gene33660.t1 AT5G59780 43.119 109 59 2 16 122 10 117 7.44e-22 92.0
MS.gene33660.t1 AT3G47600 39.655 116 69 1 10 124 8 123 7.99e-22 94.0
MS.gene33660.t1 AT1G66370 39.474 114 68 1 8 120 2 115 8.23e-22 92.0
MS.gene33660.t1 AT5G62470 41.346 104 61 0 16 119 14 117 1.14e-21 93.6
MS.gene33660.t1 AT5G49330 44.118 102 56 1 16 116 14 115 1.78e-21 93.2
MS.gene33660.t1 AT5G35550 45.263 95 51 1 16 109 16 110 2.63e-21 91.3
MS.gene33660.t1 AT5G65790 37.600 125 72 3 10 132 8 128 2.99e-21 92.8
MS.gene33660.t1 AT4G13480 40.476 126 64 3 16 131 8 132 3.13e-21 90.9
MS.gene33660.t1 AT5G14750 52.941 68 32 0 49 116 18 85 4.11e-21 88.2
MS.gene33660.t1 AT3G24310 44.762 105 55 2 16 118 20 123 5.56e-21 90.5
MS.gene33660.t1 AT3G08500 42.308 104 59 1 16 118 32 135 6.35e-21 91.7
MS.gene33660.t1 AT3G01530 40.000 120 69 2 5 122 16 134 9.47e-21 88.2
MS.gene33660.t1 AT1G74650 43.137 102 57 1 16 116 14 115 1.49e-20 90.1
MS.gene33660.t1 AT3G60460 48.958 96 47 2 16 109 13 108 1.63e-20 89.7
MS.gene33660.t1 AT2G47190 36.090 133 84 1 4 135 10 142 1.74e-20 89.0
MS.gene33660.t1 AT3G53200 52.778 72 34 0 49 120 12 83 2.56e-20 87.0
MS.gene33660.t1 AT1G68320 42.453 106 58 2 16 119 21 125 2.93e-20 88.6
MS.gene33660.t1 AT2G47460 43.137 102 57 1 16 116 14 115 4.42e-20 89.4
MS.gene33660.t1 AT5G62470 40.952 105 61 1 16 119 14 118 5.16e-20 89.0
MS.gene33660.t1 AT5G16600 41.071 112 63 2 10 119 8 118 6.44e-20 88.6
MS.gene33660.t1 AT4G37780 37.615 109 66 2 10 116 8 116 6.66e-20 88.2
MS.gene33660.t1 AT3G28910 39.815 108 64 1 10 116 8 115 1.10e-19 87.8
MS.gene33660.t1 AT2G36890 41.284 109 62 2 10 116 8 116 1.42e-19 87.0
MS.gene33660.t1 AT1G25340 37.607 117 69 1 16 132 20 132 1.42e-19 86.7
MS.gene33660.t1 AT1G25340 38.655 119 70 2 16 132 20 137 1.43e-19 86.7
MS.gene33660.t1 AT1G66380 41.667 108 62 1 11 117 5 112 1.59e-19 83.2
MS.gene33660.t1 AT4G12350 41.748 103 57 2 16 116 14 115 1.73e-19 86.7
MS.gene33660.t1 AT2G36890 41.284 109 62 2 10 116 49 157 1.96e-19 87.4
MS.gene33660.t1 AT1G25340 37.607 117 69 1 16 132 20 132 2.43e-19 86.7
MS.gene33660.t1 AT1G08810 40.741 108 63 1 10 116 8 115 2.73e-19 85.9
MS.gene33660.t1 AT1G56650 37.037 135 83 2 11 143 5 139 3.52e-19 85.1
MS.gene33660.t1 AT4G22680 41.284 109 61 2 10 116 8 115 4.59e-19 85.1
MS.gene33660.t1 AT1G66230 39.823 113 65 2 10 120 8 119 4.59e-19 85.5
MS.gene33660.t1 AT5G40350 43.158 95 53 1 16 109 19 113 6.03e-19 83.6
MS.gene33660.t1 AT2G02820 35.484 124 80 0 19 142 33 156 6.68e-19 85.9
MS.gene33660.t1 AT5G40430 26.531 196 126 4 2 186 40 228 7.01e-19 84.3
MS.gene33660.t1 AT1G48000 44.211 95 52 1 16 109 34 128 9.04e-19 84.0
MS.gene33660.t1 AT3G27810 43.158 95 53 1 16 109 22 116 1.03e-18 83.2
MS.gene33660.t1 AT2G02820 35.484 124 80 0 19 142 33 156 1.12e-18 86.3
MS.gene33660.t1 AT2G02820 35.484 124 80 0 19 142 33 156 1.29e-18 85.9
MS.gene33660.t1 AT3G06490 41.593 113 63 2 9 119 14 125 2.38e-18 84.0
MS.gene33660.t1 AT5G49620 32.370 173 103 3 6 177 18 177 2.42e-18 84.0
MS.gene33660.t1 AT3G62610 40.196 102 60 1 16 116 14 115 2.83e-18 84.0
MS.gene33660.t1 AT3G12820 51.471 68 33 0 49 116 2 69 8.18e-18 80.1
MS.gene33660.t1 AT5G59780 48.649 74 38 0 49 122 23 96 8.36e-18 80.5
MS.gene33660.t1 AT1G14350 36.134 119 65 1 19 137 28 135 1.00e-17 83.2
MS.gene33660.t1 AT1G14350 36.134 119 65 1 19 137 28 135 1.00e-17 83.2
MS.gene33660.t1 AT3G46130 48.649 74 38 0 49 122 13 86 1.21e-17 80.5
MS.gene33660.t1 AT3G46130 48.649 74 38 0 49 122 23 96 1.36e-17 80.5
MS.gene33660.t1 AT1G66390 39.815 108 64 1 11 117 5 112 1.37e-17 80.9
MS.gene33660.t1 AT3G18100 40.426 94 56 0 16 109 546 639 1.46e-17 83.2
MS.gene33660.t1 AT3G18100 40.426 94 56 0 16 109 498 591 1.76e-17 83.2
MS.gene33660.t1 AT3G18100 40.426 94 56 0 16 109 385 478 2.02e-17 82.8
MS.gene33660.t1 AT3G18100 40.426 94 56 0 16 109 333 426 2.41e-17 82.4
MS.gene33660.t1 AT5G35550 54.839 62 28 0 49 110 53 114 1.11e-16 78.6
MS.gene33660.t1 AT5G62320 41.818 110 54 3 16 116 15 123 1.48e-16 77.8
MS.gene33660.t1 AT5G26660 47.143 70 37 0 49 118 17 86 3.87e-16 77.8
MS.gene33660.t1 AT3G47600 46.053 76 41 0 49 124 42 117 4.86e-16 77.4
MS.gene33660.t1 AT2G37630 37.963 108 64 1 16 120 4 111 1.81e-15 76.3
MS.gene33660.t1 AT5G40350 50.820 61 30 0 49 109 8 68 2.55e-15 72.8
MS.gene33660.t1 AT3G27810 50.820 61 30 0 49 109 7 67 4.08e-15 72.4
MS.gene33660.t1 AT5G49620 29.947 187 103 4 6 177 18 191 8.34e-15 73.9
MS.gene33660.t1 AT1G66380 46.835 79 42 0 49 127 11 89 8.00e-14 67.0
MS.gene33660.t1 AT5G14750 46.552 58 31 0 59 116 1 58 8.94e-14 67.8
MS.gene33660.t1 AT5G14750 46.552 58 31 0 59 116 1 58 8.94e-14 67.8
MS.gene33660.t1 AT1G71030 44.615 65 36 0 52 116 5 69 2.70e-13 67.4
MS.gene33660.t1 AT1G71030 44.615 65 36 0 52 116 19 83 3.40e-13 67.4
MS.gene33660.t1 AT1G22640 50.000 58 29 0 59 116 1 58 1.19e-12 65.9
MS.gene33660.t1 AT3G23250 46.552 58 31 0 59 116 1 58 1.22e-12 66.6
MS.gene33660.t1 AT1G09770 38.824 85 51 1 17 101 8 91 2.69e-11 64.7

Find 49 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAATTGAATTCCAATTC+TGG 0.202639 3.4:+82329190 None:intergenic
GGAGCAACCCTCTTGTAATT+TGG 0.255085 3.4:+82328076 None:intergenic
TTCCCTTACACAACGAAAAT+AGG 0.258525 3.4:-82328310 MS.gene33660:CDS
AAAGGTCTTCTGTTAATTCT+TGG 0.286487 3.4:+82328541 None:intergenic
TTTCTTGTGATGCAATTATC+AGG 0.303432 3.4:+82328175 None:intergenic
AACAATATGGTGCCCAGAAT+TGG 0.308300 3.4:-82329203 MS.gene33660:CDS
CGTCAACTTGTTGAACAATA+TGG 0.317875 3.4:-82329216 MS.gene33660:CDS
CTTCTAGTTCTCTTGCCTCT+TGG 0.331265 3.4:-82328255 MS.gene33660:CDS
GAATCATTGGCATGTTATAA+TGG 0.349760 3.4:-82328413 MS.gene33660:CDS
AAAGGATCTAATATTTATAA+AGG 0.368916 3.4:-82328154 MS.gene33660:CDS
ACTTCTCTTGCCACATAACT+TGG 0.368979 3.4:+82328369 None:intergenic
AATTGGCAGGGAAAAGTTGT+AGG 0.376520 3.4:-82328588 MS.gene33660:intron
TGGAAGGATAAAGAAGGATT+TGG 0.388713 3.4:-82328020 MS.gene33660:CDS
ATCGGATTCACGGGAACAAA+TGG 0.391338 3.4:-82328483 MS.gene33660:CDS
AGTGATGAGAATGCTTGATT+TGG 0.399409 3.4:+82328100 None:intergenic
AGCAATTGAATTCCAATTCT+GGG 0.403769 3.4:+82329191 None:intergenic
TCTTCTTCCTCTTCTGTGAA+AGG 0.428456 3.4:+82328523 None:intergenic
GATAATTGCATCACAAGAAA+AGG 0.455907 3.4:-82328172 MS.gene33660:CDS
AATACATACCTGATCTTCCT+TGG 0.468542 3.4:+82329160 None:intergenic
CAGGGAAAAGTTGTAGGTTG+AGG 0.483082 3.4:-82328582 MS.gene33660:CDS
GTAAGGGAAATTAAGTATAG+AGG 0.483574 3.4:+82328324 None:intergenic
TTGCGGCTCATCGGATTCAC+GGG 0.496141 3.4:-82328492 MS.gene33660:CDS
AGAGTTGTCCACGTGGTCAC+TGG 0.498220 3.4:-82329263 MS.gene33660:CDS
ATAATGCTGTGAAGAATCAT+TGG 0.498884 3.4:-82328426 MS.gene33660:CDS
CAGAAGACCTTTCACAGAAG+AGG 0.503737 3.4:-82328530 MS.gene33660:CDS
CTTGCGGCTCATCGGATTCA+CGG 0.514410 3.4:-82328493 MS.gene33660:CDS
TCGGATTCACGGGAACAAAT+GGG 0.515800 3.4:-82328482 MS.gene33660:CDS
TAAATTCTTCTGATGATGGA+AGG 0.520438 3.4:-82328036 MS.gene33660:CDS
CAAGAGGCAAGAGAACTAGA+AGG 0.520571 3.4:+82328256 None:intergenic
GTGACCACGTGGACAACTCT+TGG 0.531230 3.4:+82329266 None:intergenic
TATAATGGCTAGAAAACAAA+GGG 0.536500 3.4:-82328398 MS.gene33660:CDS
GCGATCTTGCTCTTTGTCCG+TGG 0.543861 3.4:+82327946 None:intergenic
ACAGCATTATCAGTTCTACC+AGG 0.552201 3.4:+82328439 None:intergenic
AGAGACTACTTGCGGCTCAT+CGG 0.552562 3.4:-82328501 MS.gene33660:CDS
TGATGATGGAAGGATAAAGA+AGG 0.563335 3.4:-82328026 MS.gene33660:CDS
CACAAACTTAAAGTCTTCCA+CGG 0.571039 3.4:-82327963 MS.gene33660:CDS
ACGAAAATAGGATATGAGAA+TGG 0.572176 3.4:-82328298 MS.gene33660:CDS
GGAAAAGTTGTAGGTTGAGG+TGG 0.578152 3.4:-82328579 MS.gene33660:CDS
CATCACTTCCAAATTACAAG+AGG 0.582216 3.4:-82328084 MS.gene33660:CDS
AGGGAACAATCCAAGTTATG+TGG 0.586173 3.4:-82328379 MS.gene33660:CDS
ACACCAAGAAAATCAATGAA+AGG 0.589466 3.4:+82327890 None:intergenic
ATCACTTCCAAATTACAAGA+GGG 0.621174 3.4:-82328083 MS.gene33660:CDS
TTATAATGGCTAGAAAACAA+AGG 0.628974 3.4:-82328399 MS.gene33660:CDS
CAGCATTATCAGTTCTACCA+GGG 0.636613 3.4:+82328440 None:intergenic
CATAGAAGCAAAATTCCAAG+AGG 0.652007 3.4:+82328240 None:intergenic
GGAAGAAGAGAGACTACTTG+CGG 0.656523 3.4:-82328509 MS.gene33660:CDS
GCAGGTCGCCAGTGACCACG+TGG 0.690527 3.4:+82329255 None:intergenic
CAAAGAGCAAGATCGCGATG+AGG 0.718817 3.4:-82327939 MS.gene33660:CDS
GATACCAAGAGTTGTCCACG+TGG 0.762573 3.4:-82329270 MS.gene33660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTCCTTTTAAT+TGG - chr3.4:82328563-82328582 MS.gene33660:CDS 10.0%
!! AAAGGATCTAATATTTATAA+AGG - chr3.4:82329014-82329033 MS.gene33660:intron 15.0%
!! ATGAATTTGAAAATTAAACA+AGG + chr3.4:82328082-82328101 None:intergenic 15.0%
!! TTTAAAAAACCAAAAACATT+TGG + chr3.4:82329116-82329135 None:intergenic 15.0%
!!! CTTACCAATTAAAATTTTAT+TGG + chr3.4:82328462-82328481 None:intergenic 15.0%
!!! TCAACCAATAAAATTTTAAT+TGG - chr3.4:82328455-82328474 MS.gene33660:CDS 15.0%
!! AATTTGAAAATTAAACAAGG+AGG + chr3.4:82328079-82328098 None:intergenic 20.0%
!! TACATGAGATAATTAATAGA+TGG + chr3.4:82328504-82328523 None:intergenic 20.0%
!! TTCAAATTCATAGTGAAATT+GGG - chr3.4:82328091-82328110 MS.gene33660:CDS 20.0%
!! TTTCAAATTCATAGTGAAAT+TGG - chr3.4:82328090-82328109 MS.gene33660:CDS 20.0%
!!! TTTGGAATTTTTGGTTATTT+TGG - chr3.4:82328365-82328384 MS.gene33660:CDS 20.0%
!!! TTTTTAAATTCTTCTGATGA+TGG - chr3.4:82329128-82329147 MS.gene33660:intron 20.0%
! TATAATGGCTAGAAAACAAA+GGG - chr3.4:82328770-82328789 MS.gene33660:intron 25.0%
! TTATAATGGCTAGAAAACAA+AGG - chr3.4:82328769-82328788 MS.gene33660:intron 25.0%
!!! GTTATTTTGGTTTTCTCTAT+TGG - chr3.4:82328378-82328397 MS.gene33660:CDS 25.0%
!!! TTTTTTCCTTTTAATTGGCA+GGG - chr3.4:82328568-82328587 MS.gene33660:CDS 25.0%
!!! TTTTTTTCCTTTTAATTGGC+AGG - chr3.4:82328567-82328586 MS.gene33660:CDS 25.0%
AAAGGTCTTCTGTTAATTCT+TGG + chr3.4:82328630-82328649 None:intergenic 30.0%
ACACCAAGAAAATCAATGAA+AGG + chr3.4:82329281-82329300 None:intergenic 30.0%
ACGAAAATAGGATATGAGAA+TGG - chr3.4:82328870-82328889 MS.gene33660:intron 30.0%
AGCAATTGAATTCCAATTCT+GGG + chr3.4:82327980-82327999 None:intergenic 30.0%
ATAATGCTGTGAAGAATCAT+TGG - chr3.4:82328742-82328761 MS.gene33660:intron 30.0%
ATCACTTCCAAATTACAAGA+GGG - chr3.4:82329085-82329104 MS.gene33660:intron 30.0%
ATGTTAAGAAGAAGGATATC+AGG - chr3.4:82328168-82328187 MS.gene33660:CDS 30.0%
GAATCATTGGCATGTTATAA+TGG - chr3.4:82328755-82328774 MS.gene33660:intron 30.0%
GATAATTGCATCACAAGAAA+AGG - chr3.4:82328996-82329015 MS.gene33660:intron 30.0%
GGTATTTATGTTAGTGAGAA+TGG - chr3.4:82328203-82328222 MS.gene33660:CDS 30.0%
GTAAGGGAAATTAAGTATAG+AGG + chr3.4:82328847-82328866 None:intergenic 30.0%
TGATATCCTTCTTCTTAACA+TGG + chr3.4:82328169-82328188 None:intergenic 30.0%
TTATGTTAGTGAGAATGGAT+CGG - chr3.4:82328208-82328227 MS.gene33660:CDS 30.0%
TTTCTTGTGATGCAATTATC+AGG + chr3.4:82328996-82329015 None:intergenic 30.0%
! ATCCTATTTTCGTTGTGTAA+GGG + chr3.4:82328863-82328882 None:intergenic 30.0%
! ATTCAAGTTTCTGTTGTTCT+TGG - chr3.4:82328287-82328306 MS.gene33660:CDS 30.0%
! TATCCTATTTTCGTTGTGTA+AGG + chr3.4:82328864-82328883 None:intergenic 30.0%
! TTACATTTGCTTGTTGAGTT+TGG - chr3.4:82328347-82328366 MS.gene33660:CDS 30.0%
!! CTTGTTGAGTTTGGAATTTT+TGG - chr3.4:82328356-82328375 MS.gene33660:CDS 30.0%
!! TAAATTCTTCTGATGATGGA+AGG - chr3.4:82329132-82329151 MS.gene33660:intron 30.0%
!!! GTTCCTTTCATTGATTTTCT+TGG - chr3.4:82329275-82329294 MS.gene33660:CDS 30.0%
!!! TTCATTGATTTTCTTGGTGT+TGG - chr3.4:82329281-82329300 MS.gene33660:CDS 30.0%
AATACATACCTGATCTTCCT+TGG + chr3.4:82328011-82328030 None:intergenic 35.0%
AGTGATGAGAATGCTTGATT+TGG + chr3.4:82329071-82329090 None:intergenic 35.0%
AGTTTCTGTTGTTCTTGGAT+TGG - chr3.4:82328292-82328311 MS.gene33660:CDS 35.0%
CACAAACTTAAAGTCTTCCA+CGG - chr3.4:82329205-82329224 MS.gene33660:CDS 35.0%
CAGCAATTGAATTCCAATTC+TGG + chr3.4:82327981-82328000 None:intergenic 35.0%
CATAGAAGCAAAATTCCAAG+AGG + chr3.4:82328931-82328950 None:intergenic 35.0%
CATCACTTCCAAATTACAAG+AGG - chr3.4:82329084-82329103 MS.gene33660:intron 35.0%
GAAATGCCATGTTAAGAAGA+AGG - chr3.4:82328160-82328179 MS.gene33660:CDS 35.0%
GATATCAGGAAGTTTCTTGA+TGG - chr3.4:82328182-82328201 MS.gene33660:CDS 35.0%
TCAATTGCTGAAAAACTCCA+AGG - chr3.4:82327991-82328010 MS.gene33660:CDS 35.0%
TCTTCTTAACATGGCATTTC+TGG + chr3.4:82328160-82328179 None:intergenic 35.0%
TGGAAGGATAAAGAAGGATT+TGG - chr3.4:82329148-82329167 MS.gene33660:intron 35.0%
TTCCCTTACACAACGAAAAT+AGG - chr3.4:82328858-82328877 MS.gene33660:intron 35.0%
! ACTTTTCCCTGCCAATTAAA+AGG + chr3.4:82328577-82328596 None:intergenic 35.0%
!! CGTCAACTTGTTGAACAATA+TGG - chr3.4:82327952-82327971 MS.gene33660:CDS 35.0%
!! TGATGATGGAAGGATAAAGA+AGG - chr3.4:82329142-82329161 MS.gene33660:intron 35.0%
!!! TTGGATTGGTTACTGTTTTG+TGG - chr3.4:82328306-82328325 MS.gene33660:CDS 35.0%
AACAATATGGTGCCCAGAAT+TGG - chr3.4:82327965-82327984 MS.gene33660:CDS 40.0%
AATTGGCAGGGAAAAGTTGT+AGG - chr3.4:82328580-82328599 MS.gene33660:CDS 40.0%
ACAGCATTATCAGTTCTACC+AGG + chr3.4:82328732-82328751 None:intergenic 40.0%
ACTTCTCTTGCCACATAACT+TGG + chr3.4:82328802-82328821 None:intergenic 40.0%
AGGGAACAATCCAAGTTATG+TGG - chr3.4:82328789-82328808 MS.gene33660:intron 40.0%
CAGCATTATCAGTTCTACCA+GGG + chr3.4:82328731-82328750 None:intergenic 40.0%
GAAAAACTCCAAGGAAGATC+AGG - chr3.4:82328000-82328019 MS.gene33660:CDS 40.0%
TCTTCTTCCTCTTCTGTGAA+AGG + chr3.4:82328648-82328667 None:intergenic 40.0%
! AGGGTTGCTCCAAATGTTTT+TGG - chr3.4:82329104-82329123 MS.gene33660:intron 40.0%
! CGAAGTTTTTCATCTTCAGC+AGG + chr3.4:82327934-82327953 None:intergenic 40.0%
! CTAATAGCAAGACTTTTCCC+TGG - chr3.4:82328711-82328730 MS.gene33660:intron 40.0%
ATCGGATTCACGGGAACAAA+TGG - chr3.4:82328685-82328704 MS.gene33660:intron 45.0%
CAAGAGGCAAGAGAACTAGA+AGG + chr3.4:82328915-82328934 None:intergenic 45.0%
CAGAAGACCTTTCACAGAAG+AGG - chr3.4:82328638-82328657 MS.gene33660:intron 45.0%
CAGGGAAAAGTTGTAGGTTG+AGG - chr3.4:82328586-82328605 MS.gene33660:intron 45.0%
GGAAGAAGAGAGACTACTTG+CGG - chr3.4:82328659-82328678 MS.gene33660:intron 45.0%
GGAGCAACCCTCTTGTAATT+TGG + chr3.4:82329095-82329114 None:intergenic 45.0%
TCGGATTCACGGGAACAAAT+GGG - chr3.4:82328686-82328705 MS.gene33660:intron 45.0%
TGTTAGTGAGAATGGATCGG+TGG - chr3.4:82328211-82328230 MS.gene33660:CDS 45.0%
! GGAAAAGTTGTAGGTTGAGG+TGG - chr3.4:82328589-82328608 MS.gene33660:intron 45.0%
!! CTTCTAGTTCTCTTGCCTCT+TGG - chr3.4:82328913-82328932 MS.gene33660:intron 45.0%
AGAGACTACTTGCGGCTCAT+CGG - chr3.4:82328667-82328686 MS.gene33660:intron 50.0%
CAAAGAGCAAGATCGCGATG+AGG - chr3.4:82329229-82329248 MS.gene33660:CDS 50.0%
GATACCAAGAGTTGTCCACG+TGG - chr3.4:82327898-82327917 MS.gene33660:CDS 50.0%
AGAGTTGTCCACGTGGTCAC+TGG - chr3.4:82327905-82327924 MS.gene33660:CDS 55.0%
CTTGCGGCTCATCGGATTCA+CGG - chr3.4:82328675-82328694 MS.gene33660:intron 55.0%
GCGATCTTGCTCTTTGTCCG+TGG + chr3.4:82329225-82329244 None:intergenic 55.0%
GTGACCACGTGGACAACTCT+TGG + chr3.4:82327905-82327924 None:intergenic 55.0%
TTGCGGCTCATCGGATTCAC+GGG - chr3.4:82328676-82328695 MS.gene33660:intron 55.0%
GCAGGTCGCCAGTGACCACG+TGG + chr3.4:82327916-82327935 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 82327871 82329319 82327871 ID=MS.gene33660
chr3.4 mRNA 82327871 82329319 82327871 ID=MS.gene33660.t1;Parent=MS.gene33660
chr3.4 exon 82329169 82329319 82329169 ID=MS.gene33660.t1.exon1;Parent=MS.gene33660.t1
chr3.4 CDS 82329169 82329319 82329169 ID=cds.MS.gene33660.t1;Parent=MS.gene33660.t1
chr3.4 exon 82327871 82328601 82327871 ID=MS.gene33660.t1.exon2;Parent=MS.gene33660.t1
chr3.4 CDS 82327871 82328601 82327871 ID=cds.MS.gene33660.t1;Parent=MS.gene33660.t1
Gene Sequence

>MS.gene33660

ATGGAGGATTCTTCTTCTGCAGCTGAAGATACCAAGAGTTGTCCACGTGGTCACTGGCGACCTGCTGAAGATGAAAAACTTCGTCAACTTGTTGAACAATATGGTGCCCAGAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGTATGTATTATGTAATATTAATTCAAGCTTTATTATTAATTGATGATTTATTAGCCTCCTTGTTTAATTTTCAAATTCATAGTGAAATTGGGAGAGTACTGTAAACACAGAAACACAGACATGTGCTCTTATTAACCAGAAATGCCATGTTAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAATGGATCGGTGGTAACTGAAGAATAGATGATGATGCTCAAAATAAGCATATCTTTTTGTAGTTTAATTCAAGTTTCTGTTGTTCTTGGATTGGTTACTGTTTTGTGGCGATTACTTAGACATCTTTTACATTTGCTTGTTGAGTTTGGAATTTTTGGTTATTTTGGTTTTCTCTATTGGAATATCTTGCTTAAAAAAAAAAAATTGTTATGATCTCTTAAACTCATCTTGTACTCAACCAATAAAATTTTAATTGGTAAGAAACTAGTATATATTGTTTCCATCTATTAATTATCTCATGTACTGTTTTATATAAAATAAATAAAAAATTAAGCAATAAGTAATTTTTTTTTCCTTTTAATTGGCAGGGAAAAGTTGTAGGTTGAGGTGGTTCAATCAGCTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTTGCGGCTCATCGGATTCACGGGAACAAATGGGCACTAATAGCAAGACTTTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCTAGAAAACAAAGGGAACAATCCAAGTTATGTGGCAAGAGAAGTTTTCAAGAAGTTTTTTCTAACTCCTCTATACTTAATTTCCCTTACACAACGAAAATAGGATATGAGAATGGAAGATTCTATGATAATACACCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCTTCTATGTCAACAACAACAACAAACACTACTACTGCTACTACTATTTTACCTGATAATTGCATCACAAGAAAAGGATCTAATATTTATAAAGGCTCAGATAGATCATTTCTCTACAGAATTTGTCCAAATCAAGCATTCTCATCACTTCCAAATTACAAGAGGGTTGCTCCAAATGTTTTTGGTTTTTTAAATTCTTCTGATGATGGAAGGATAAAGAAGGATTTGGTTAGTAGTTTATGTGATAATTCATCAACATTAATCACAAACTTAAAGTCTTCCACGGACAAAGAGCAAGATCGCGATGAGGTCGAAATTGAGCAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA
Protein sequence

>MS.gene33660.t1

MEDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQEVFSNSSILNFPYTTKIGYENGRFYDNTPSSSLASWNFASMSTTTTNTTTATTILPDNCITRKGSNIYKGSDRSFLYRICPNQAFSSLPNYKRVAPNVFGFLNSSDDGRIKKDLVSSLCDNSSTLITNLKSSTDKEQDRDEVEIEQHKEVPFIDFLGVGVSSS