AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05458


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05458.t1 MTR_6g084440 92.278 518 28 3 1 507 1 517 0.0 848
MS.gene05458.t1 MTR_6g084440 91.892 518 28 4 1 507 1 515 0.0 839
MS.gene05458.t1 MTR_8g104270 54.906 530 173 15 1 513 1 481 2.43e-157 460
MS.gene05458.t1 MTR_4g005350 42.180 211 99 7 290 482 115 320 2.19e-36 140
MS.gene05458.t1 MTR_5g040600 28.448 232 135 7 295 507 597 816 8.98e-19 90.5
MS.gene05458.t1 MTR_7g010160 29.365 252 149 8 281 510 412 656 1.36e-18 89.7
MS.gene05458.t1 MTR_8g467380 34.848 132 79 3 355 481 587 716 2.85e-12 69.7
MS.gene05458.t1 MTR_8g467390 25.581 215 131 7 291 481 126 335 1.31e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05458.t1 AT1G73850 45.293 563 235 18 1 507 1 546 1.31e-124 378
MS.gene05458.t1 AT1G73850 45.293 563 235 18 1 507 1 546 1.31e-124 378
MS.gene05458.t1 AT3G20260 41.121 214 102 8 290 483 117 326 9.87e-32 127
MS.gene05458.t1 AT5G39785 39.259 135 71 4 355 480 349 481 5.98e-17 84.3
MS.gene05458.t1 AT5G39785 39.259 135 71 4 355 480 349 481 6.19e-17 84.3
MS.gene05458.t1 AT5G39785 39.259 135 71 4 355 480 349 481 6.19e-17 84.3
MS.gene05458.t1 AT5G39785 39.259 135 71 4 355 480 349 481 6.19e-17 84.3
MS.gene05458.t1 AT5G39785 39.259 135 71 4 355 480 349 481 7.11e-17 84.3
MS.gene05458.t1 AT1G69610 28.780 205 130 6 291 481 270 472 1.08e-14 77.4
MS.gene05458.t1 AT1G69610 28.780 205 130 6 291 481 315 517 1.39e-14 77.0
MS.gene05458.t1 AT1G69610 28.780 205 130 6 291 481 314 516 1.45e-14 77.0

Find 64 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCGTAAGATTCCCATTT+TGG 0.147178 6.4:-58291646 None:intergenic
TCAATTATTTGTAGAGATTC+TGG 0.189000 6.4:+58291592 MS.gene05458:CDS
TAACATGGGAAGCACTTAAT+TGG 0.198782 6.4:+58292505 MS.gene05458:CDS
GTAATTGTACCTCGATATTC+AGG 0.210210 6.4:-58292717 None:intergenic
CAAGAAGAAGTTGTCCAAAA+TGG 0.218903 6.4:+58291632 MS.gene05458:CDS
TTAGTAGCTGATATAATTTA+TGG 0.274049 6.4:+58290712 MS.gene05458:CDS
AGCTTCATTTCTTGTGATAA+TGG 0.291025 6.4:+58293503 MS.gene05458:CDS
GGATTGTGACTTATGTCTTC+TGG 0.294504 6.4:-58292441 None:intergenic
GTAGCTCCAAGGTCAATTTC+AGG 0.295069 6.4:+58292381 MS.gene05458:CDS
ATCAACATTTGAAGCCCTTT+TGG 0.305056 6.4:-58292547 None:intergenic
GATGATCAGAAGGAGAATAT+TGG 0.307291 6.4:+58293459 MS.gene05458:CDS
CACTATTGGTTCAACATCTA+AGG 0.318019 6.4:+58291549 MS.gene05458:CDS
GCACCCTCTAATTCACAATA+TGG 0.341978 6.4:-58292462 None:intergenic
ATGATCAGAAGGAGAATATT+GGG 0.345161 6.4:+58293460 MS.gene05458:CDS
GAGAATGAACCTTATGAGTT+TGG 0.345523 6.4:+58292636 MS.gene05458:CDS
GCACAAAAGCTTCATGAAAC+TGG 0.382594 6.4:+58291715 MS.gene05458:CDS
AATTGTTGTGCAATTGTTGC+TGG 0.391890 6.4:-58292579 None:intergenic
AAAGATGATGAAGAGATATA+TGG 0.394408 6.4:+58291517 MS.gene05458:CDS
AGTAGCTACTAATGAAGTTA+AGG 0.396569 6.4:-58290486 None:intergenic
TGTGATTGGTCCTACACAAT+TGG 0.408052 6.4:+58291465 MS.gene05458:CDS
AAGAAATGTCATTTCTAGAA+AGG 0.415445 6.4:+58291686 MS.gene05458:CDS
GTCTCAAAATCTGAAACAAT+TGG 0.415879 6.4:-58290904 None:intergenic
TTGTATAGGTTAACTGTGAT+AGG 0.416462 6.4:-58291018 None:intergenic
TATGGTGATACAACCACTAT+TGG 0.427306 6.4:+58291535 MS.gene05458:CDS
CTTAGATGTTGAACCAATAG+TGG 0.428171 6.4:-58291548 None:intergenic
TTGAAGTAGAAAAGAGAAAG+AGG 0.433188 6.4:-58290447 None:intergenic
TTTAAAAGACGGATTAATGT+TGG 0.441489 6.4:-58293630 None:intergenic
TTTAAAGAAAGTTAATCAAA+AGG 0.445739 6.4:+58293647 MS.gene05458:CDS
AAGAAGAAGTTGTCCAAAAT+GGG 0.445917 6.4:+58291633 MS.gene05458:CDS
TTTCTTGTGATAATGGAAGA+TGG 0.449843 6.4:+58293510 MS.gene05458:CDS
ATTCTATTCCAATTGAAAAG+AGG 0.460919 6.4:+58290983 MS.gene05458:CDS
TCAGGGACTAGGAGCAACTT+TGG 0.470020 6.4:-58292699 None:intergenic
CTCATTCTAGCATAAATCTC+TGG 0.472752 6.4:-58292666 None:intergenic
TTATTTCTCTCCAATTGTGT+AGG 0.473744 6.4:-58291475 None:intergenic
CATCTAAGGACTCTTCTGAT+TGG 0.477906 6.4:+58291563 MS.gene05458:CDS
CAATCCATATTGTGAATTAG+AGG 0.497184 6.4:+58292458 MS.gene05458:CDS
TTGCACAAATTTGCTTAACA+TGG 0.498853 6.4:+58292490 MS.gene05458:CDS
TTATGCTAGAATGAGGCATA+TGG 0.512293 6.4:+58292674 MS.gene05458:CDS
GGTCTCCTACCAAACTCATA+AGG 0.512862 6.4:-58292645 None:intergenic
GATTAACTTTCTTTAAAAGA+CGG 0.520863 6.4:-58293641 None:intergenic
ATTCTCCCTGAAATTGACCT+TGG 0.525426 6.4:-58292387 None:intergenic
GTAGCTACTCTTTATTCCAA+AGG 0.527051 6.4:+58290500 MS.gene05458:CDS
TCGTAGAAATCAAAGAGGCT+TGG 0.527566 6.4:+58293602 MS.gene05458:CDS
ATGAACCTTATGAGTTTGGT+AGG 0.530017 6.4:+58292640 MS.gene05458:CDS
TAGCTCCAAGGTCAATTTCA+GGG 0.532390 6.4:+58292382 MS.gene05458:CDS
GTAGCTGATATAATTTATGG+TGG 0.535251 6.4:+58290715 MS.gene05458:CDS
AGGGCTTCAAATGTTGATGT+TGG 0.560816 6.4:+58292552 MS.gene05458:CDS
AGAATCAGATGATGATCAGA+AGG 0.565291 6.4:+58293449 MS.gene05458:intron
CAGAGATTTATGCTAGAATG+AGG 0.571884 6.4:+58292667 MS.gene05458:CDS
AATCCATATTGTGAATTAGA+GGG 0.576076 6.4:+58292459 MS.gene05458:CDS
AACATTCATGAATTTCCTCA+AGG 0.579977 6.4:+58293539 MS.gene05458:CDS
TAATTGTACCTCGATATTCA+GGG 0.581514 6.4:-58292716 None:intergenic
AACTGTGATAGGAGGAGAAG+TGG 0.582918 6.4:-58291007 None:intergenic
TGCACAAATTTGCTTAACAT+GGG 0.586140 6.4:+58292491 MS.gene05458:CDS
GTTTCTCTTTATCAGCCTTG+AGG 0.587313 6.4:-58293554 None:intergenic
TACCTCGATATTCAGGGACT+AGG 0.588940 6.4:-58292710 None:intergenic
TATAGGTTAACTGTGATAGG+AGG 0.592053 6.4:-58291015 None:intergenic
TTCTACGAAAGTAAGATGCA+AGG 0.609967 6.4:-58293587 None:intergenic
TACTTTCGTAGAAATCAAAG+AGG 0.610424 6.4:+58293597 MS.gene05458:CDS
GATCTATCATAGTAGCTCCA+AGG 0.637964 6.4:+58292370 MS.gene05458:CDS
TCTTCAATGAAGCTATCTTG+AGG 0.638095 6.4:-58290826 None:intergenic
CTCCTAGTCCCTGAATATCG+AGG 0.670680 6.4:+58292708 MS.gene05458:CDS
TAAGATGCAAGGATCTGACA+TGG 0.678566 6.4:-58293576 None:intergenic
GAAACAATTGGTGACTTGTG+AGG 0.679020 6.4:-58290892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAGCTATTATTA+AGG + chr6.4:58292292-58292311 MS.gene05458:intron 10.0%
!!! ATTTGAAATTTTTTAATAAG+TGG - chr6.4:58293000-58293019 None:intergenic 10.0%
!! AAATATCAGAAAATTAAGAA+AGG - chr6.4:58291752-58291771 None:intergenic 15.0%
!! CAAGTTCTATTAAAATATTA+TGG + chr6.4:58292771-58292790 MS.gene05458:intron 15.0%
!! GAAGAAATAATATTATAATG+TGG - chr6.4:58292099-58292118 None:intergenic 15.0%
!! TTTAAAGAAAGTTAATCAAA+AGG + chr6.4:58293647-58293666 MS.gene05458:CDS 15.0%
!!! CATAATATTTTAATAGAACT+TGG - chr6.4:58292773-58292792 None:intergenic 15.0%
!! AAAAATTGTAACTAAGTAGT+TGG + chr6.4:58292210-58292229 MS.gene05458:intron 20.0%
!! ACATAAATTAAATTGACACA+TGG - chr6.4:58291250-58291269 None:intergenic 20.0%
!! ATTGAAAAACTATTTAACTG+TGG - chr6.4:58293126-58293145 None:intergenic 20.0%
!! GTAGTAATAATAATAACCTT+TGG - chr6.4:58290519-58290538 None:intergenic 20.0%
!! TCTTCAAATGTATTTGTATT+TGG + chr6.4:58292114-58292133 MS.gene05458:intron 20.0%
!! TTAGTAGCTGATATAATTTA+TGG + chr6.4:58290712-58290731 MS.gene05458:CDS 20.0%
!!! ATATTTTAATAGAACTTGGA+AGG - chr6.4:58292769-58292788 None:intergenic 20.0%
!!! GATTAACTTTCTTTAAAAGA+CGG - chr6.4:58293644-58293663 None:intergenic 20.0%
!!! GTTAAATAGTTTTTCAATTG+TGG + chr6.4:58293128-58293147 MS.gene05458:intron 20.0%
! AAAGATGATGAAGAGATATA+TGG + chr6.4:58291517-58291536 MS.gene05458:CDS 25.0%
! AATCCATATTGTGAATTAGA+GGG + chr6.4:58292459-58292478 MS.gene05458:CDS 25.0%
! AGCATTATTAAACCATTTGT+AGG + chr6.4:58293213-58293232 MS.gene05458:intron 25.0%
! ATAGTAAAAATGAGTCTCAA+AGG + chr6.4:58290758-58290777 MS.gene05458:CDS 25.0%
! ATTATGTTTGGTATTTGTGT+TGG + chr6.4:58291278-58291297 MS.gene05458:intron 25.0%
! ATTCTATTCCAATTGAAAAG+AGG + chr6.4:58290983-58291002 MS.gene05458:CDS 25.0%
! CATTATTAAACCATTTGTAG+GGG + chr6.4:58293215-58293234 MS.gene05458:intron 25.0%
! CTAACGTTCAAGATATATTA+TGG + chr6.4:58291844-58291863 MS.gene05458:intron 25.0%
! GCATTATTAAACCATTTGTA+GGG + chr6.4:58293214-58293233 MS.gene05458:intron 25.0%
! TAATAATGCTTCACACTAAT+GGG - chr6.4:58293203-58293222 None:intergenic 25.0%
! TCAATAATAGAGAATTTGAC+CGG - chr6.4:58291818-58291837 None:intergenic 25.0%
! TCAATTATTTGTAGAGATTC+TGG + chr6.4:58291592-58291611 MS.gene05458:CDS 25.0%
! TTAATAATGCTTCACACTAA+TGG - chr6.4:58293204-58293223 None:intergenic 25.0%
!! AAGAAATGTCATTTCTAGAA+AGG + chr6.4:58291686-58291705 MS.gene05458:CDS 25.0%
!! ACAAGAATTTTCAAACCAAA+AGG + chr6.4:58292532-58292551 MS.gene05458:CDS 25.0%
!! CAAGAATTTTCAAACCAAAA+GGG + chr6.4:58292533-58292552 MS.gene05458:CDS 25.0%
!! TCTTTTATAAATCATGACCA+AGG + chr6.4:58293036-58293055 MS.gene05458:intron 25.0%
!!! GATTTTTTGGAGGAAAAAAT+AGG + chr6.4:58293078-58293097 MS.gene05458:intron 25.0%
!!! TTGCTAGATATGTGATTTTT+TGG + chr6.4:58293065-58293084 MS.gene05458:intron 25.0%
!!! TTTAAAAGACGGATTAATGT+TGG - chr6.4:58293633-58293652 None:intergenic 25.0%
AACATTCATGAATTTCCTCA+AGG + chr6.4:58293539-58293558 MS.gene05458:CDS 30.0%
AAGAAGAAGTTGTCCAAAAT+GGG + chr6.4:58291633-58291652 MS.gene05458:CDS 30.0%
AATAATGCTTCACACTAATG+GGG - chr6.4:58293202-58293221 None:intergenic 30.0%
AATGAGAAAAGTAACTAGAG+AGG - chr6.4:58290546-58290565 None:intergenic 30.0%
AGCTTCATTTCTTGTGATAA+TGG + chr6.4:58293503-58293522 MS.gene05458:CDS 30.0%
AGTAGCTACTAATGAAGTTA+AGG - chr6.4:58290489-58290508 None:intergenic 30.0%
ATATCTAGCAATTATGTCCT+TGG - chr6.4:58293056-58293075 None:intergenic 30.0%
ATGATCAGAAGGAGAATATT+GGG + chr6.4:58293460-58293479 MS.gene05458:CDS 30.0%
ATGTGTGTCAGTATTATGTT+TGG + chr6.4:58291266-58291285 MS.gene05458:intron 30.0%
ATTATATATTGCCAACCCAT+TGG + chr6.4:58293159-58293178 MS.gene05458:intron 30.0%
CAATCCATATTGTGAATTAG+AGG + chr6.4:58292458-58292477 MS.gene05458:CDS 30.0%
GGTGTTTCATTGATGTTAAA+TGG + chr6.4:58291348-58291367 MS.gene05458:intron 30.0%
GTAGCTGATATAATTTATGG+TGG + chr6.4:58290715-58290734 MS.gene05458:CDS 30.0%
TAATTGTACCTCGATATTCA+GGG - chr6.4:58292719-58292738 None:intergenic 30.0%
TACTTTCGTAGAAATCAAAG+AGG + chr6.4:58293597-58293616 MS.gene05458:CDS 30.0%
TTCAACAACCAAAGTTTCAT+TGG - chr6.4:58291997-58292016 None:intergenic 30.0%
TTGAAGTAGAAAAGAGAAAG+AGG - chr6.4:58290450-58290469 None:intergenic 30.0%
TTGTATAGGTTAACTGTGAT+AGG - chr6.4:58291021-58291040 None:intergenic 30.0%
! GTCTCAAAATCTGAAACAAT+TGG - chr6.4:58290907-58290926 None:intergenic 30.0%
! TGCACAAATTTGCTTAACAT+GGG + chr6.4:58292491-58292510 MS.gene05458:CDS 30.0%
! TTAATCCAACGACTAAGTTT+TGG + chr6.4:58291874-58291893 MS.gene05458:intron 30.0%
! TTATTTCTCTCCAATTGTGT+AGG - chr6.4:58291478-58291497 None:intergenic 30.0%
! TTGCACAAATTTGCTTAACA+TGG + chr6.4:58292490-58292509 MS.gene05458:CDS 30.0%
!! CTAAGTCATCACTTTTGTAT+AGG - chr6.4:58291035-58291054 None:intergenic 30.0%
!! TTTCTTGTGATAATGGAAGA+TGG + chr6.4:58293510-58293529 MS.gene05458:CDS 30.0%
!!! ATAGTTGAGAGTGTTTTATC+TGG + chr6.4:58292025-58292044 MS.gene05458:intron 30.0%
!!! CTAGATATGTGATTTTTTGG+AGG + chr6.4:58293068-58293087 MS.gene05458:intron 30.0%
AATTGTTGTGCAATTGTTGC+TGG - chr6.4:58292582-58292601 None:intergenic 35.0%
ACAAAAACACTCTCATCTCT+TGG - chr6.4:58291448-58291467 None:intergenic 35.0%
ACTTAAGAACGAAACTTCAG+GGG + chr6.4:58292255-58292274 MS.gene05458:intron 35.0%
AGAATCAGATGATGATCAGA+AGG + chr6.4:58293449-58293468 MS.gene05458:intron 35.0%
ATGAACCTTATGAGTTTGGT+AGG + chr6.4:58292640-58292659 MS.gene05458:CDS 35.0%
CAAGAAGAAGTTGTCCAAAA+TGG + chr6.4:58291632-58291651 MS.gene05458:CDS 35.0%
CACTTAAGAACGAAACTTCA+GGG + chr6.4:58292254-58292273 MS.gene05458:intron 35.0%
CAGAGATTTATGCTAGAATG+AGG + chr6.4:58292667-58292686 MS.gene05458:CDS 35.0%
CTCATTCTAGCATAAATCTC+TGG - chr6.4:58292669-58292688 None:intergenic 35.0%
CTGTTTAATTCCCCTACAAA+TGG - chr6.4:58293228-58293247 None:intergenic 35.0%
CTTAGATGTTGAACCAATAG+TGG - chr6.4:58291551-58291570 None:intergenic 35.0%
GAGAATGAACCTTATGAGTT+TGG + chr6.4:58292636-58292655 MS.gene05458:CDS 35.0%
GAGAGTGACAAAAACTATGA+TGG + chr6.4:58291057-58291076 MS.gene05458:CDS 35.0%
GATGATCAGAAGGAGAATAT+TGG + chr6.4:58293459-58293478 MS.gene05458:CDS 35.0%
GTAATTGTACCTCGATATTC+AGG - chr6.4:58292720-58292739 None:intergenic 35.0%
GTAGCTACTCTTTATTCCAA+AGG + chr6.4:58290500-58290519 MS.gene05458:CDS 35.0%
TATAGGTTAACTGTGATAGG+AGG - chr6.4:58291018-58291037 None:intergenic 35.0%
TATGGTGATACAACCACTAT+TGG + chr6.4:58291535-58291554 MS.gene05458:CDS 35.0%
TCACTTAAGAACGAAACTTC+AGG + chr6.4:58292253-58292272 MS.gene05458:intron 35.0%
TCTTATGTTCGTGTCTGTAT+CGG + chr6.4:58291327-58291346 MS.gene05458:intron 35.0%
TCTTCAATGAAGCTATCTTG+AGG - chr6.4:58290829-58290848 None:intergenic 35.0%
TTATGCTAGAATGAGGCATA+TGG + chr6.4:58292674-58292693 MS.gene05458:CDS 35.0%
TTCTACGAAAGTAAGATGCA+AGG - chr6.4:58293590-58293609 None:intergenic 35.0%
TTGTCTCTCCAATGAAACTT+TGG + chr6.4:58291986-58292005 MS.gene05458:intron 35.0%
! TGTCGACAAGTTGAACATTA+TGG - chr6.4:58291952-58291971 None:intergenic 35.0%
!! ATCAACATTTGAAGCCCTTT+TGG - chr6.4:58292550-58292569 None:intergenic 35.0%
!! CACTATTGGTTCAACATCTA+AGG + chr6.4:58291549-58291568 MS.gene05458:CDS 35.0%
!! TAACATGGGAAGCACTTAAT+TGG + chr6.4:58292505-58292524 MS.gene05458:CDS 35.0%
!!! GATGAGAGTGTTTTTGTGAT+TGG + chr6.4:58291451-58291470 MS.gene05458:CDS 35.0%
!!! TTGAGAGTGTTTTATCTGGA+CGG + chr6.4:58292029-58292048 MS.gene05458:intron 35.0%
AAAATTGTGTCTGGTGTCTC+AGG + chr6.4:58291304-58291323 MS.gene05458:intron 40.0%
AGGGCTTCAAATGTTGATGT+TGG + chr6.4:58292552-58292571 MS.gene05458:CDS 40.0%
ATTCTCCCTGAAATTGACCT+TGG - chr6.4:58292390-58292409 None:intergenic 40.0%
CATCTAAGGACTCTTCTGAT+TGG + chr6.4:58291563-58291582 MS.gene05458:CDS 40.0%
GATCTATCATAGTAGCTCCA+AGG + chr6.4:58292370-58292389 MS.gene05458:CDS 40.0%
GCACAAAAGCTTCATGAAAC+TGG + chr6.4:58291715-58291734 MS.gene05458:CDS 40.0%
GCACCCTCTAATTCACAATA+TGG - chr6.4:58292465-58292484 None:intergenic 40.0%
GGATTGTGACTTATGTCTTC+TGG - chr6.4:58292444-58292463 None:intergenic 40.0%
GTTTCTCTTTATCAGCCTTG+AGG - chr6.4:58293557-58293576 None:intergenic 40.0%
TAAGATGCAAGGATCTGACA+TGG - chr6.4:58293579-58293598 None:intergenic 40.0%
TAGCTCCAAGGTCAATTTCA+GGG + chr6.4:58292382-58292401 MS.gene05458:CDS 40.0%
TATTTCCTCTCCAGTTTCTC+CGG - chr6.4:58291900-58291919 None:intergenic 40.0%
TCGTAGAAATCAAAGAGGCT+TGG + chr6.4:58293602-58293621 MS.gene05458:CDS 40.0%
TGTTGGTGCAAAATTGTGTC+TGG + chr6.4:58291295-58291314 MS.gene05458:intron 40.0%
TTAATAAGCCAGATCTCTCG+CGG + chr6.4:58291783-58291802 MS.gene05458:intron 40.0%
! ACTGCGTAAGATTCCCATTT+TGG - chr6.4:58291649-58291668 None:intergenic 40.0%
! ATATTGCCAACCCATTGGTT+AGG + chr6.4:58293164-58293183 MS.gene05458:intron 40.0%
! GAAACAATTGGTGACTTGTG+AGG - chr6.4:58290895-58290914 None:intergenic 40.0%
! GAAGTGGTCCTCTTTTCAAT+TGG - chr6.4:58290994-58291013 None:intergenic 40.0%
! TATTGCCAACCCATTGGTTA+GGG + chr6.4:58293165-58293184 MS.gene05458:intron 40.0%
! TGTGATTGGTCCTACACAAT+TGG + chr6.4:58291465-58291484 MS.gene05458:CDS 40.0%
AACTGTGATAGGAGGAGAAG+TGG - chr6.4:58291010-58291029 None:intergenic 45.0%
ATGCATGGACCCTAACCAAT+GGG - chr6.4:58293177-58293196 None:intergenic 45.0%
GAGAATTTGACCGGAGATTG+AGG - chr6.4:58291809-58291828 None:intergenic 45.0%
GGTCTCCTACCAAACTCATA+AGG - chr6.4:58292648-58292667 None:intergenic 45.0%
GTAGCTCCAAGGTCAATTTC+AGG + chr6.4:58292381-58292400 MS.gene05458:CDS 45.0%
TACCTCGATATTCAGGGACT+AGG - chr6.4:58292713-58292732 None:intergenic 45.0%
TATGCATGGACCCTAACCAA+TGG - chr6.4:58293178-58293197 None:intergenic 45.0%
!! ACTAAGTAGTTGGCTTGAGC+TGG + chr6.4:58292220-58292239 MS.gene05458:intron 45.0%
!! TAAGTTTTGGCCGGAGAAAC+TGG + chr6.4:58291887-58291906 MS.gene05458:intron 45.0%
!! TCCAACGACTAAGTTTTGGC+CGG + chr6.4:58291878-58291897 MS.gene05458:intron 45.0%
ATGGACCCTAACCAATGGGT+TGG - chr6.4:58293173-58293192 None:intergenic 50.0%
CACACTAATGGGGCTATGCA+TGG - chr6.4:58293192-58293211 None:intergenic 50.0%
CTCCTAGTCCCTGAATATCG+AGG + chr6.4:58292708-58292727 MS.gene05458:CDS 50.0%
TCAGGGACTAGGAGCAACTT+TGG - chr6.4:58292702-58292721 None:intergenic 50.0%
TCCGGCCAAAACTTAGTCGT+TGG - chr6.4:58291882-58291901 None:intergenic 50.0%
TTTGGCCGGAGAAACTGGAG+AGG + chr6.4:58291892-58291911 MS.gene05458:intron 55.0%
GATTGAGGCCGCGAGAGATC+TGG - chr6.4:58291794-58291813 None:intergenic 60.0%
TCTCTCGCGGCCTCAATCTC+CGG + chr6.4:58291796-58291815 MS.gene05458:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 58290376 58293680 58290376 ID=MS.gene05458
chr6.4 mRNA 58290376 58293680 58290376 ID=MS.gene05458.t1;Parent=MS.gene05458
chr6.4 exon 58290376 58290521 58290376 ID=MS.gene05458.t1.exon1;Parent=MS.gene05458.t1
chr6.4 CDS 58290376 58290521 58290376 ID=cds.MS.gene05458.t1;Parent=MS.gene05458.t1
chr6.4 exon 58290621 58291078 58290621 ID=MS.gene05458.t1.exon2;Parent=MS.gene05458.t1
chr6.4 CDS 58290621 58291078 58290621 ID=cds.MS.gene05458.t1;Parent=MS.gene05458.t1
chr6.4 exon 58291389 58291736 58291389 ID=MS.gene05458.t1.exon3;Parent=MS.gene05458.t1
chr6.4 CDS 58291389 58291736 58291389 ID=cds.MS.gene05458.t1;Parent=MS.gene05458.t1
chr6.4 exon 58292361 58292729 58292361 ID=MS.gene05458.t1.exon4;Parent=MS.gene05458.t1
chr6.4 CDS 58292361 58292729 58292361 ID=cds.MS.gene05458.t1;Parent=MS.gene05458.t1
chr6.4 exon 58293451 58293680 58293451 ID=MS.gene05458.t1.exon5;Parent=MS.gene05458.t1
chr6.4 CDS 58293451 58293680 58293451 ID=cds.MS.gene05458.t1;Parent=MS.gene05458.t1
Gene Sequence

>MS.gene05458

ATGACATGTTCTAAAGAAGAAGCTCTTATTAGACTCTTCTACAATTCTTCAAGCTCTTTCAAACTTCTCTTCCTCTTTCTCTTTTCTACTTCAACTTTGCTTCTCAAAATCCTTAACTTCATTAGTAGCTACTCTTTATTCCAAAGGTTATTATTATTACTACTACACCTCTCTAGTTACTTTTCTCATTCTTAATGCTTCTATCATTATATTTACTATAAAGTTTCTATATTTGTTTTTTGTAGTGATCAACAATATGAATATGTTTCATCTGAAGAAGAAGAAGAAGAAATTCAAGAAAGTTATTGTTATGAAGATTCTATAGAGAAAGATGATTTAGTAGCTGATATAATTTATGGTGGAGAAGCTCTTGTATTTCTTCATAGTAAAAATGAGTCTCAAAGGAATCATTCTTTTTCTTATGAAGAAGAAGAAGAAGAGTTTATCACACCTCAAGATAGCTTCATTGAAGAGTTTTCTTCAGAAGAAAAATTTTCAACAGAAAATTTGCATGTTCCTCACAAGTCACCAATTGTTTCAGATTTTGAGACAGAAACAAATGAAACAGAAATTCAAACAGAAGAAGAAGATGCTGATTCTGTTCAAGATTCTATTCCAATTGAAAAGAGGACCACTTCTCCTCCTATCACAGTTAACCTATACAAAAGTGATGACTTAGTAGAGAGTGACAAAAACTATGATGGTATTAATTTCACATCATATATAATTTGTTACATTATTCACATGCATCACTTATAGTTCAAATCTTATTCTAAGCTATGTAGCACTGACACTTCTTATTAATGTTGTGTCTAACACGACAATAACACATGCGATTATATTCGATTAATTTATTTTTCAAATTATGTATCCATGTGTCAATTTAATTTATGTGTGTCAGTATTATGTTTGGTATTTGTGTTGGTGCAAAATTGTGTCTGGTGTCTCAGGTCTTATGTTCGTGTCTGTATCGGTGTTTCATTGATGTTAAATGGTGTTATACTTTTTTGCAGAAAAATATGTTGATATTGAAGTAATAAAAAATGAGAAAGTGCAAGAAGAAAATATTCCAAGAGATGAGAGTGTTTTTGTGATTGGTCCTACACAATTGGAGAGAAATAAGAAGTTGATTATTGAAGAAAAAGATGATGAAGAGATATATGGTGATACAACCACTATTGGTTCAACATCTAAGGACTCTTCTGATTGGAGAAGTTCAATTATTTGTAGAGATTCTGGAACTGATGATTCATCATCAAGAAGAAGTTGTCCAAAATGGGAATCTTACGCAGTTTTTCAAAAATATGATGAAGAAATGTCATTTCTAGAAAGGATTAGTGCACAAAAGCTTCATGAAACTGGTAACATATACACCTTTCTTAATTTTCTGATATTTAATTGCTCAAATTAATAAGCCAGATCTCTCGCGGCCTCAATCTCCGGTCAAATTCTCTATTATTGAATTAATCTAACGTTCAAGATATATTATGGAGTTAGATTAATCCAACGACTAAGTTTTGGCCGGAGAAACTGGAGAGGAAATAAAAGATTCAAGTTGTTCAATAAGTATATACCATAATGTTCAACTTGTCGACAATTTGAATCTTCTCTTGTCTCTCCAATGAAACTTTGGTTGTTGAATTAATCTAATAGTTGAGAGTGTTTTATCTGGACGGTTACATTAATTCAATAGCTAACACGAAATATTTCATAATGATAGCCACATTATAATATTATTTCTTCAAATGTATTTGTATTTGGAAACTTTTTCTTTTTGTTGCTTAAAATATTTGTGTTTTGAAACAATAATAAAAAATAGTTTTAATTAAATTCAAAAAATTGTAACTAAGTAGTTGGCTTGAGCTGGTTAACAAGCTTCACTTAAGAACGAAACTTCAGGGGTAAAGACAAAAAAAAAAAAAAATAGCTATTATTAAGGATTGATTTTGTTACACATTATTAGTAACACTTTTAATTAATTTCAGAATCATTGAGATCTATCATAGTAGCTCCAAGGTCAATTTCAGGGAGAATTGTATACAAACTTTCAAGTATGAAAAAAAAACCAGAAGACATAAGTCACAATCCATATTGTGAATTAGAGGGTGCATATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAAACCAAAAGGGCTTCAAATGTTGATGTTGGTTGTCCAGCAACAATTGCACAACAATTTCAACAATTTCAAGTTTTGTTGCAAAGATATGTAGAGAATGAACCTTATGAGTTTGGTAGGAGACCAGAGATTTATGCTAGAATGAGGCATATGGCACCAAAGTTGCTCCTAGTCCCTGAATATCGAGGTACAATTACTTAGCAATATTCATGAAAAACTAGTACCTTCCAAGTTCTATTAAAATATTATGGTAAAAATTGATTTGAAATAATTTTTAATTTGATAAAAAAAAATTAAAAATGTTAAATAAAACTTTTATGTGAGTTATAATATATTTTTTAATCAAAATTTTAAAATATAAAATATTTAAATTTTATACAATTCTATTTGTATATGATTTTAAATTAATTTATTACTTAGATTATTATAATTTACAAAAGTAAAGATTTAAATGCCACTTATTAAAAAATTTCAAATAAAATATATCACTAATTCTTTTATAAATCATGACCAAGGACATAATTGCTAGATATGTGATTTTTTGGAGGAAAAAATAGGTGTAAGTTTTAAAATGTATATTCCACAGTTAAATAGTTTTTCAATTGTGGTATTTATTATTATATATTGCCAACCCATTGGTTAGGGTCCATGCATAGCCCCATTAGTGTGAAGCATTATTAAACCATTTGTAGGGGAATTAAACAGTATATAAATATAATTAATTGAATATTTAAAAATAAACTTTAACAAAGACTTTTTTATCTTTTTCGTTCTCACTTAATTCTATTTTAATTTTTTATTCATAATGTTTAGTGTATAAATAGTATTGTATTCATACAAAATTTACTTGTTGTGATATTAATTATGACTATATTTATTTTTTTCTTGTTTGTGTTAATTAATTAAAGAATCAGATGATGATCAGAAGGAGAATATTGGGTTTAACACTAAAATATCATCAGCTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGTAGAAATCAAAGAGGCTTGGTTGATCCAACATTAATCCGTCTTTTAAAGAAAGTTAATCAAAAGGCAAGTTCCTAA

Protein sequence

>MS.gene05458.t1

MTCSKEEALIRLFYNSSSSFKLLFLFLFSTSTLLLKILNFISSYSLFQSDQQYEYVSSEEEEEEIQESYCYEDSIEKDDLVADIIYGGEALVFLHSKNESQRNHSFSYEEEEEEFITPQDSFIEEFSSEEKFSTENLHVPHKSPIVSDFETETNETEIQTEEEDADSVQDSIPIEKRTTSPPITVNLYKSDDLVESDKNYDEKYVDIEVIKNEKVQEENIPRDESVFVIGPTQLERNKKLIIEEKDDEEIYGDTTTIGSTSKDSSDWRSSIICRDSGTDDSSSRRSCPKWESYAVFQKYDEEMSFLERISAQKLHETESLRSIIVAPRSISGRIVYKLSSMKKKPEDISHNPYCELEGAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENIGFNTKISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPTLIRLLKKVNQKASS