Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33738.t1 | XP_024637216.1 | 97.5 | 511 | 13 | 0 | 4 | 514 | 2 | 512 | 5.40E-288 | 999.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33738.t1 | Q9SQT8 | 71.9 | 513 | 141 | 2 | 4 | 514 | 92 | 603 | 5.4e-212 | 738.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33738.t1 | I3T8Z3 | 97.3 | 514 | 11 | 1 | 4 | 514 | 2 | 515 | 6.6e-288 | 998.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052540 | MS.gene33738 | 0.867621 | 1.20E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33738.t1 | MTR_4g090620 | 91.365 | 498 | 29 | 2 | 4 | 501 | 2 | 485 | 0.0 | 894 |
| MS.gene33738.t1 | MTR_7g114190 | 37.278 | 338 | 161 | 6 | 113 | 447 | 5 | 294 | 1.42e-63 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33738.t1 | AT3G06350 | 71.930 | 513 | 141 | 2 | 4 | 514 | 92 | 603 | 0.0 | 723 |
Find 118 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGTTCTTGTTCACTTAC+AGG | 0.158590 | 4.4:+23282746 | MS.gene33738:CDS |
| CGTATACTTTGTGCAAAATT+TGG | 0.173415 | 4.4:+23284243 | MS.gene33738:CDS |
| GTTATTGGGGCCGGTGGTGC+TGG | 0.178808 | 4.4:+23286189 | MS.gene33738:CDS |
| GTTAATCTGCGTCCCTATAA+TGG | 0.202016 | 4.4:+23282582 | MS.gene33738:CDS |
| GGTAAGCTGTTTGTTGTTAT+TGG | 0.204026 | 4.4:+23286174 | MS.gene33738:CDS |
| GTAAGCTGTTTGTTGTTATT+GGG | 0.209152 | 4.4:+23286175 | MS.gene33738:CDS |
| GGACCTGATACAAAAGTATA+TGG | 0.246424 | 4.4:+23284366 | MS.gene33738:CDS |
| ACAGGACTGGAGATGTTTAT+TGG | 0.265366 | 4.4:+23287806 | MS.gene33738:CDS |
| TCCATTCATTGGACTTGTTA+TGG | 0.267088 | 4.4:+23284200 | MS.gene33738:CDS |
| GAAGGCTTCATTGAACAATA+TGG | 0.271186 | 4.4:-23284424 | None:intergenic |
| GGCGCGGATGTTTCAAATTA+TGG | 0.276023 | 4.4:+23283583 | MS.gene33738:CDS |
| AGAACTCTTCAGAAATATTA+TGG | 0.285586 | 4.4:+23288009 | MS.gene33738:CDS |
| CCATGGTTTCGCCCATTATA+GGG | 0.298605 | 4.4:-23282594 | None:intergenic |
| ATCAAAACCAATTGTCTTGA+AGG | 0.319919 | 4.4:-23284442 | None:intergenic |
| TTTGGTGGGTATCTTACTTT+TGG | 0.321545 | 4.4:+23284261 | MS.gene33738:CDS |
| TCCATGGTTTCGCCCATTAT+AGG | 0.329672 | 4.4:-23282595 | None:intergenic |
| AAATTCCAGGTTCCATTCAT+TGG | 0.330251 | 4.4:+23284189 | MS.gene33738:intron |
| ACAGGTGTTTCATCAACTTT+TGG | 0.331032 | 4.4:-23286949 | None:intergenic |
| ATATTTCTGAAGAGTTCTTT+TGG | 0.340525 | 4.4:-23288004 | None:intergenic |
| GCTGGGAAGGCACTTGCTTA+TGG | 0.344432 | 4.4:+23286207 | MS.gene33738:CDS |
| TACATACCACCTTCCCATTT+GGG | 0.345206 | 4.4:-23282885 | None:intergenic |
| TTACATTGACGTTGAACTTA+AGG | 0.345605 | 4.4:+23282968 | MS.gene33738:CDS |
| CCATTCATTGGACTTGTTAT+GGG | 0.346230 | 4.4:+23284201 | MS.gene33738:CDS |
| ATACATACCACCTTCCCATT+TGG | 0.350326 | 4.4:-23282886 | None:intergenic |
| CGACAATATGAGCATTATAC+TGG | 0.370012 | 4.4:+23287839 | MS.gene33738:CDS |
| TTGAAAGAAGCAGAAGAATC+TGG | 0.381681 | 4.4:+23287770 | MS.gene33738:CDS |
| TTAATCTGCGTCCCTATAAT+GGG | 0.387976 | 4.4:+23282583 | MS.gene33738:CDS |
| AATGAAGCCTTCAAGACAAT+TGG | 0.388263 | 4.4:+23284435 | MS.gene33738:CDS |
| TTATTGGGGCCGGTGGTGCT+GGG | 0.401637 | 4.4:+23286190 | MS.gene33738:CDS |
| CAACCTCGTCACAACACTTA+AGG | 0.412513 | 4.4:-23285782 | None:intergenic |
| ACAAAAGTATATGGGATTGT+TGG | 0.413162 | 4.4:+23284375 | MS.gene33738:CDS |
| TCTGGAGCCACTATTGTAAC+AGG | 0.414913 | 4.4:+23287788 | MS.gene33738:CDS |
| GTTGCAAGAATACAAGCAAC+TGG | 0.416406 | 4.4:+23283512 | MS.gene33738:CDS |
| GCTATTTCTGCTATTGAGGA+TGG | 0.424228 | 4.4:+23286006 | MS.gene33738:CDS |
| GAATTGGTTACACAGTCAAT+AGG | 0.430150 | 4.4:+23285913 | MS.gene33738:intron |
| AACCTCGTCACAACACTTAA+GGG | 0.433794 | 4.4:-23285781 | None:intergenic |
| AAATAGCATACCTTTGAAAC+AGG | 0.438226 | 4.4:-23286967 | None:intergenic |
| CTATACAATTTCAGACAACT+TGG | 0.439985 | 4.4:+23284345 | MS.gene33738:CDS |
| ACTCCGTCAGTTGACGATCT+TGG | 0.444580 | 4.4:+23283482 | MS.gene33738:CDS |
| TGGGGCCGGTGGTGCTGGGA+AGG | 0.445473 | 4.4:+23286194 | MS.gene33738:CDS |
| CCAACAGATGGGAAGTTGAT+TGG | 0.446923 | 4.4:+23285961 | MS.gene33738:CDS |
| AAGGCTTCATTGAACAATAT+GGG | 0.447559 | 4.4:-23284423 | None:intergenic |
| TTGGACTTGTTATGGGCGAC+AGG | 0.448844 | 4.4:+23284208 | MS.gene33738:CDS |
| ATCAACGCTTGGATGCATTA+CGG | 0.453875 | 4.4:+23282922 | MS.gene33738:CDS |
| TGGTGCTATTTCTGCTATTG+AGG | 0.455359 | 4.4:+23286002 | MS.gene33738:CDS |
| GATTACATCAGCAAGTTCTC+TGG | 0.463591 | 4.4:-23286836 | None:intergenic |
| CTAGCAAACACAACTTCAAT+CGG | 0.472513 | 4.4:+23286919 | MS.gene33738:CDS |
| GAGCATTATACTGGATTGCC+AGG | 0.481705 | 4.4:+23287848 | MS.gene33738:CDS |
| ACAAACAGCTTACCAGCTAA+TGG | 0.483108 | 4.4:-23286165 | None:intergenic |
| ACAGCTGTTTCGCCATTAGC+TGG | 0.484838 | 4.4:+23286153 | MS.gene33738:CDS |
| CTCCAGTCCTGTTACAATAG+TGG | 0.488995 | 4.4:-23287795 | None:intergenic |
| TCCAGGTCAACCTACACTTA+AGG | 0.491107 | 4.4:+23284311 | MS.gene33738:CDS |
| CTGTTTGTTGTTATTGGGGC+CGG | 0.492358 | 4.4:+23286180 | MS.gene33738:CDS |
| CTATTTCTGCTATTGAGGAT+GGG | 0.499559 | 4.4:+23286007 | MS.gene33738:CDS |
| GTGATTGCAAACCGCACCTA+TGG | 0.499726 | 4.4:+23286255 | MS.gene33738:CDS |
| TCCTTAAGTGTAGGTTGACC+TGG | 0.501004 | 4.4:-23284312 | None:intergenic |
| GCTAGAATCATACCATCCTC+TGG | 0.504787 | 4.4:-23286901 | None:intergenic |
| TACTTTGTGCAAAATTTGGT+GGG | 0.508343 | 4.4:+23284247 | MS.gene33738:CDS |
| AGAGAACTTGCTGATGTAAT+CGG | 0.508494 | 4.4:+23286838 | MS.gene33738:CDS |
| CAGCGTTACCATTCCTCACA+AGG | 0.511040 | 4.4:+23285752 | MS.gene33738:intron |
| GACCTGATACAAAAGTATAT+GGG | 0.520334 | 4.4:+23284367 | MS.gene33738:CDS |
| AAGTGCCTTCCCAGCACCAC+CGG | 0.523362 | 4.4:-23286199 | None:intergenic |
| CGAGGTTGATCCAGTGGCTA+AGG | 0.524038 | 4.4:+23285797 | MS.gene33738:CDS |
| TGATGAAACACCTGTTTCAA+AGG | 0.525212 | 4.4:+23286957 | MS.gene33738:CDS |
| GGCTGCCTCCTTGTGAGGAA+TGG | 0.525797 | 4.4:-23285760 | None:intergenic |
| CCCTATAATGGGCGAAACCA+TGG | 0.526376 | 4.4:+23282594 | MS.gene33738:CDS |
| GATAATTACCATCCAGAGGA+TGG | 0.527848 | 4.4:+23286889 | MS.gene33738:CDS |
| GTAATCAGCTTCTAATTCCA+TGG | 0.529914 | 4.4:-23282949 | None:intergenic |
| GCAGGTAAACATAATGATAG+TGG | 0.530409 | 4.4:+23286129 | MS.gene33738:intron |
| CCCATAACAAGTCCAATGAA+TGG | 0.531677 | 4.4:-23284201 | None:intergenic |
| ATACTTTGTGCAAAATTTGG+TGG | 0.532307 | 4.4:+23284246 | MS.gene33738:CDS |
| GGCTATAACACAGATTATGT+TGG | 0.533071 | 4.4:+23285982 | MS.gene33738:CDS |
| GGTGATTTACTGTGACTGAC+AGG | 0.533856 | 4.4:-23284402 | None:intergenic |
| TCAGGGGTAGTTTCAGCTCC+AGG | 0.533902 | 4.4:+23284294 | MS.gene33738:CDS |
| TAACCAAATACCTTAGCCAC+TGG | 0.534581 | 4.4:-23285807 | None:intergenic |
| GCTTATGGTGCAAAAGAGAA+AGG | 0.544146 | 4.4:+23286222 | MS.gene33738:CDS |
| TGGACTTGTTATGGGCGACA+GGG | 0.557078 | 4.4:+23284209 | MS.gene33738:CDS |
| AAGTATTAAGATCTTGAGAA+GGG | 0.559004 | 4.4:-23282702 | None:intergenic |
| CCAATCAACTTCCCATCTGT+TGG | 0.559134 | 4.4:-23285961 | None:intergenic |
| AGCCACTATTGTAACAGGAC+TGG | 0.563539 | 4.4:+23287793 | MS.gene33738:CDS |
| AAAGTATTAAGATCTTGAGA+AGG | 0.564924 | 4.4:-23282703 | None:intergenic |
| TGGGAAGGTGGTATGTATGA+AGG | 0.566893 | 4.4:+23282891 | MS.gene33738:CDS |
| CTTAGGCCCAAATGGGAAGG+TGG | 0.569446 | 4.4:+23282879 | MS.gene33738:intron |
| TTTCTTAGGCCCAAATGGGA+AGG | 0.578981 | 4.4:+23282876 | MS.gene33738:intron |
| GTGAGATGAAACAATGACCT+TGG | 0.579371 | 4.4:-23283447 | None:intergenic |
| GGATGCATTACGGTTAGCCA+TGG | 0.582710 | 4.4:+23282932 | MS.gene33738:CDS |
| GAATCATACCATCCTCTGGA+TGG | 0.586059 | 4.4:-23286897 | None:intergenic |
| TTAAGGGCTGCCTCCTTGTG+AGG | 0.596708 | 4.4:-23285765 | None:intergenic |
| TAAGCTGTTTGTTGTTATTG+GGG | 0.607370 | 4.4:+23286176 | MS.gene33738:CDS |
| TTGCAAGAATACAAGCAACT+GGG | 0.609562 | 4.4:+23283513 | MS.gene33738:CDS |
| AAAGATTGCAACGACTGCCG+TGG | 0.610819 | 4.4:+23283547 | MS.gene33738:CDS |
| AGGTGATGAAAATCAACGCT+TGG | 0.611331 | 4.4:+23282911 | MS.gene33738:CDS |
| TTGTAAGAAGACCAACAGAT+GGG | 0.614700 | 4.4:+23285950 | MS.gene33738:CDS |
| CAGTTCTATGACTCTATACG+CGG | 0.615632 | 4.4:+23283407 | MS.gene33738:CDS |
| TTGCTTGTATTCTTGCAACA+AGG | 0.615931 | 4.4:-23283508 | None:intergenic |
| GTAATTATCTAAATCACTGA+GGG | 0.622651 | 4.4:-23286875 | None:intergenic |
| GGACTTGTTATGGGCGACAG+GGG | 0.630222 | 4.4:+23284210 | MS.gene33738:CDS |
| TTTGTTGTTATTGGGGCCGG+TGG | 0.632690 | 4.4:+23286183 | MS.gene33738:CDS |
| TTTAGATAATTACCATCCAG+AGG | 0.639923 | 4.4:+23286885 | MS.gene33738:CDS |
| GAACTTGCTGATGTAATCGG+TGG | 0.640214 | 4.4:+23286841 | MS.gene33738:CDS |
| AGCCCTTAAGTGTTGTGACG+AGG | 0.641813 | 4.4:+23285779 | MS.gene33738:CDS |
| TTGCCAAGATCGTCAACTGA+CGG | 0.643556 | 4.4:-23283485 | None:intergenic |
| AACCTGTAAGTGAACAAGAA+CGG | 0.648571 | 4.4:-23282748 | None:intergenic |
| TGCAACAGATCCTTAAGTGT+AGG | 0.648739 | 4.4:-23284321 | None:intergenic |
| GTTGTAAGAAGACCAACAGA+TGG | 0.654788 | 4.4:+23285949 | MS.gene33738:CDS |
| AATGAAGCTTACCATAGGTG+CGG | 0.656843 | 4.4:-23286266 | None:intergenic |
| TTGTGACGAGGTTGATCCAG+TGG | 0.677946 | 4.4:+23285791 | MS.gene33738:CDS |
| TGCCGTGGAGATCACTGATG+TGG | 0.678999 | 4.4:+23283562 | MS.gene33738:CDS |
| AGTTCTATGACTCTATACGC+GGG | 0.679296 | 4.4:+23283408 | MS.gene33738:CDS |
| GTGCAAAAGAGAAAGGAGCA+AGG | 0.686151 | 4.4:+23286229 | MS.gene33738:CDS |
| GGTAATTATCTAAATCACTG+AGG | 0.690501 | 4.4:-23286876 | None:intergenic |
| TGCAAGAATACAAGCAACTG+GGG | 0.691736 | 4.4:+23283514 | MS.gene33738:CDS |
| TGGAGATCACTGATGTGGCG+CGG | 0.694129 | 4.4:+23283567 | MS.gene33738:CDS |
| GCTATTGAGGATGGGCTACG+AGG | 0.705976 | 4.4:+23286015 | MS.gene33738:CDS |
| CGCCACATCAGTGATCTCCA+CGG | 0.712453 | 4.4:-23283564 | None:intergenic |
| GAAGACATACAATAAAACCA+AGG | 0.716769 | 4.4:+23283430 | MS.gene33738:CDS |
| CGTTACCATTCCTCACAAGG+AGG | 0.724770 | 4.4:+23285755 | MS.gene33738:CDS |
| AATCTAATCGAATTTCGACA+AGG | 0.737741 | 4.4:-23282663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACACTTTTATTAAAAAAT+AGG | + | chr4.4:23285084-23285103 | MS.gene33738:intron | 10.0% |
| !!! | TTTTAATTTTATTAAATGGA+TGG | + | chr4.4:23286398-23286417 | MS.gene33738:intron | 10.0% |
| !! | AAAATTACTAGGAAAAAAAA+AGG | - | chr4.4:23284872-23284891 | None:intergenic | 15.0% |
| !! | ATATCATATATATAACTGTT+AGG | - | chr4.4:23285342-23285361 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTACATTTTCTT+AGG | + | chr4.4:23282862-23282881 | MS.gene33738:intron | 15.0% |
| !!! | AATTTTAACATAACTATTGT+TGG | + | chr4.4:23284166-23284185 | MS.gene33738:intron | 15.0% |
| !!! | ATCCTTTTTTTTTAAAAACT+CGG | - | chr4.4:23285177-23285196 | None:intergenic | 15.0% |
| !!! | GAATTATGTATTCTAATTTT+TGG | + | chr4.4:23284571-23284590 | MS.gene33738:intron | 15.0% |
| !!! | GTCAAATATTGTTTTTATTA+GGG | + | chr4.4:23287612-23287631 | MS.gene33738:intron | 15.0% |
| !!! | TGTCAAATATTGTTTTTATT+AGG | + | chr4.4:23287611-23287630 | MS.gene33738:intron | 15.0% |
| !!! | TTTTTTTCCTAGTAATTTTA+TGG | + | chr4.4:23284873-23284892 | MS.gene33738:intron | 15.0% |
| !! | AAACTAACCATAAAATTACT+AGG | - | chr4.4:23284883-23284902 | None:intergenic | 20.0% |
| !! | AAATTTATACTTACTGTTGT+AGG | + | chr4.4:23286061-23286080 | MS.gene33738:intron | 20.0% |
| !! | AATAAGTTAGGAAGTTAATT+TGG | - | chr4.4:23285304-23285323 | None:intergenic | 20.0% |
| !! | ACTATGATTGTGTATTTATT+TGG | + | chr4.4:23287437-23287456 | MS.gene33738:intron | 20.0% |
| !! | ATACAAAAAGCTAAACTTAA+TGG | + | chr4.4:23282634-23282653 | MS.gene33738:CDS | 20.0% |
| !! | CATAAATATTTCAAACCAAA+AGG | - | chr4.4:23287414-23287433 | None:intergenic | 20.0% |
| !! | TAATTCAAACAATCTTCATA+AGG | - | chr4.4:23284557-23284576 | None:intergenic | 20.0% |
| !! | TCTTAAATAAGAAAAGGTTT+CGG | + | chr4.4:23286577-23286596 | MS.gene33738:intron | 20.0% |
| !! | TGATATCGCTATAATTTATT+TGG | + | chr4.4:23285356-23285375 | MS.gene33738:intron | 20.0% |
| !! | TGCTTACAGATTAAATTATA+TGG | + | chr4.4:23287319-23287338 | MS.gene33738:intron | 20.0% |
| !! | TGTTTCAAAATATCATATGT+TGG | + | chr4.4:23286350-23286369 | MS.gene33738:intron | 20.0% |
| !! | TTCACAATATTTCAAAACAT+AGG | + | chr4.4:23284801-23284820 | MS.gene33738:intron | 20.0% |
| !!! | AGTTTATGTATTTTTATTGG+TGG | + | chr4.4:23284467-23284486 | MS.gene33738:CDS | 20.0% |
| !!! | ATATTCTCCCTTATATTTTA+CGG | + | chr4.4:23283671-23283690 | MS.gene33738:intron | 20.0% |
| !!! | ATCCGAGTTTTTAAAAAAAA+AGG | + | chr4.4:23285172-23285191 | MS.gene33738:intron | 20.0% |
| !!! | GATTTTTATTTGACATGTAA+CGG | - | chr4.4:23283969-23283988 | None:intergenic | 20.0% |
| !!! | TATGTAAGAATATTTTAGAG+TGG | + | chr4.4:23287293-23287312 | MS.gene33738:intron | 20.0% |
| !!! | TCTTAGTTTTGAATTTTGAT+TGG | - | chr4.4:23285142-23285161 | None:intergenic | 20.0% |
| !!! | TGGAGTTTATGTATTTTTAT+TGG | + | chr4.4:23284464-23284483 | MS.gene33738:CDS | 20.0% |
| !!! | TTAAAGAATGAGTATTTTGA+TGG | - | chr4.4:23287503-23287522 | None:intergenic | 20.0% |
| !!! | TTATGCTACAAATCTTATTT+GGG | + | chr4.4:23284670-23284689 | MS.gene33738:intron | 20.0% |
| ! | AAAAGAAGTTGAATTGCAAA+AGG | + | chr4.4:23286313-23286332 | MS.gene33738:intron | 25.0% |
| ! | AAAATATTGCACGATCTTAA+TGG | + | chr4.4:23283725-23283744 | MS.gene33738:intron | 25.0% |
| ! | AAAGAATACATAATCTTGGT+AGG | + | chr4.4:23284846-23284865 | MS.gene33738:intron | 25.0% |
| ! | AAGAAAGACAAGAGTTTAAA+AGG | - | chr4.4:23285600-23285619 | None:intergenic | 25.0% |
| ! | AAGTATTAAGATCTTGAGAA+GGG | - | chr4.4:23282705-23282724 | None:intergenic | 25.0% |
| ! | AATATCACAATATGCTATGT+TGG | + | chr4.4:23287177-23287196 | MS.gene33738:intron | 25.0% |
| ! | AATCTTTAATATTTCCTGCT+AGG | + | chr4.4:23284972-23284991 | MS.gene33738:intron | 25.0% |
| ! | AATGTTAATAAGCAAAAGGA+TGG | - | chr4.4:23286553-23286572 | None:intergenic | 25.0% |
| ! | AATTTACGATTACTGCATTA+AGG | + | chr4.4:23284123-23284142 | MS.gene33738:intron | 25.0% |
| ! | ACCATTTATATAAGCTTACT+CGG | + | chr4.4:23283050-23283069 | MS.gene33738:intron | 25.0% |
| ! | AGAACTCTTCAGAAATATTA+TGG | + | chr4.4:23288009-23288028 | MS.gene33738:CDS | 25.0% |
| ! | ATAAAAATCTGCAATAGGTT+TGG | + | chr4.4:23283980-23283999 | MS.gene33738:intron | 25.0% |
| ! | ATCAACAAATATGTTTGACA+AGG | - | chr4.4:23286784-23286803 | None:intergenic | 25.0% |
| ! | ATCGTGATAAAATAGCAAAA+AGG | - | chr4.4:23283116-23283135 | None:intergenic | 25.0% |
| ! | ATGTGTATAGATGAAGATAA+AGG | + | chr4.4:23283841-23283860 | MS.gene33738:intron | 25.0% |
| ! | ATTTACGATTACTGCATTAA+GGG | + | chr4.4:23284124-23284143 | MS.gene33738:intron | 25.0% |
| ! | CAAAATACTCATTCTTTAAG+TGG | + | chr4.4:23287504-23287523 | MS.gene33738:intron | 25.0% |
| ! | CAAGAGTTTAAAAGGATAAT+AGG | - | chr4.4:23285592-23285611 | None:intergenic | 25.0% |
| ! | CAATGTATGTTCAATAATGT+TGG | + | chr4.4:23285848-23285867 | MS.gene33738:intron | 25.0% |
| ! | GTAATTATCTAAATCACTGA+GGG | - | chr4.4:23286878-23286897 | None:intergenic | 25.0% |
| ! | GTCAAATAAAAATCTGCAAT+AGG | + | chr4.4:23283975-23283994 | MS.gene33738:intron | 25.0% |
| ! | GTTATGCTACAAATCTTATT+TGG | + | chr4.4:23284669-23284688 | MS.gene33738:intron | 25.0% |
| ! | TATAGCTGATTATATTTGTC+TGG | + | chr4.4:23284091-23284110 | MS.gene33738:intron | 25.0% |
| ! | TATGGTTATGTTATGGTAAA+TGG | + | chr4.4:23284612-23284631 | MS.gene33738:intron | 25.0% |
| ! | TCCAAAAGAATACATAATCT+TGG | + | chr4.4:23284842-23284861 | MS.gene33738:intron | 25.0% |
| ! | TCTTTCATAATTCTTCGAAT+TGG | + | chr4.4:23285897-23285916 | MS.gene33738:intron | 25.0% |
| ! | TGAGTAAGTCCTTAAAAAAT+TGG | - | chr4.4:23284502-23284521 | None:intergenic | 25.0% |
| ! | TGTGTATAGATGAAGATAAA+GGG | + | chr4.4:23283842-23283861 | MS.gene33738:intron | 25.0% |
| ! | TGTTATGGTAAATGGTATTA+TGG | + | chr4.4:23284620-23284639 | MS.gene33738:intron | 25.0% |
| ! | TTCCTCTCTTAAATAAGAAA+AGG | + | chr4.4:23286571-23286590 | MS.gene33738:intron | 25.0% |
| ! | TTCTACCACATATTTATGTT+TGG | + | chr4.4:23287556-23287575 | MS.gene33738:intron | 25.0% |
| ! | TTTGAACACACAAATGTATA+AGG | - | chr4.4:23283708-23283727 | None:intergenic | 25.0% |
| !! | AAAGTATTAAGATCTTGAGA+AGG | - | chr4.4:23282706-23282725 | None:intergenic | 25.0% |
| !! | ACCAAGATTATGTATTCTTT+TGG | - | chr4.4:23284846-23284865 | None:intergenic | 25.0% |
| !! | GTAACTTGTCTAGAAATTAA+AGG | + | chr4.4:23283230-23283249 | MS.gene33738:intron | 25.0% |
| !! | TCAAAGGTATGCTATTTATA+TGG | + | chr4.4:23286973-23286992 | MS.gene33738:intron | 25.0% |
| !! | TTAATTTCTAGACAAGTTAC+AGG | - | chr4.4:23283230-23283249 | None:intergenic | 25.0% |
| !! | TTGTAATGACTTATACCTTT+TGG | + | chr4.4:23287396-23287415 | MS.gene33738:intron | 25.0% |
| !!! | AACCTTTTCTTATTTAAGAG+AGG | - | chr4.4:23286576-23286595 | None:intergenic | 25.0% |
| !!! | AATTCAACTTCTTTTAACTC+TGG | - | chr4.4:23286308-23286327 | None:intergenic | 25.0% |
| !!! | AGTTTTGAATTTTGATTGGT+TGG | - | chr4.4:23285138-23285157 | None:intergenic | 25.0% |
| !!! | ATATTTCTGAAGAGTTCTTT+TGG | - | chr4.4:23288007-23288026 | None:intergenic | 25.0% |
| !!! | ATGATCTTGCCAATTTTTTA+AGG | + | chr4.4:23284490-23284509 | MS.gene33738:CDS | 25.0% |
| !!! | ATTCAACTTCTTTTAACTCT+GGG | - | chr4.4:23286307-23286326 | None:intergenic | 25.0% |
| !!! | TAATAAAAGTGTTTTTCCCT+TGG | - | chr4.4:23285078-23285097 | None:intergenic | 25.0% |
| !!! | TCATAGTCTTTTGAAATCAA+GGG | + | chr4.4:23285434-23285453 | MS.gene33738:intron | 25.0% |
| !!! | TGCTATTTTATCACGATTTA+TGG | + | chr4.4:23283119-23283138 | MS.gene33738:intron | 25.0% |
| !!! | TTAATGGTAAAAGTACTTCA+AGG | + | chr4.4:23283741-23283760 | MS.gene33738:intron | 25.0% |
| !!! | TTCATAGTCTTTTGAAATCA+AGG | + | chr4.4:23285433-23285452 | MS.gene33738:intron | 25.0% |
| !!! | TTGATTTTTCTAGTGAAGAT+TGG | + | chr4.4:23287079-23287098 | MS.gene33738:intron | 25.0% |
| !!! | TTTTTAAAAACTCGGATCTT+TGG | - | chr4.4:23285169-23285188 | None:intergenic | 25.0% |
| AAGGCTTCATTGAACAATAT+GGG | - | chr4.4:23284426-23284445 | None:intergenic | 30.0% | |
| AATCTAATCGAATTTCGACA+AGG | - | chr4.4:23282666-23282685 | None:intergenic | 30.0% | |
| AATGTTTCTTGTACACCTTT+AGG | - | chr4.4:23285468-23285487 | None:intergenic | 30.0% | |
| ACCGAGTAAGCTTATATAAA+TGG | - | chr4.4:23283054-23283073 | None:intergenic | 30.0% | |
| AGGATGATATTCATAAAAGC+AGG | - | chr4.4:23285572-23285591 | None:intergenic | 30.0% | |
| ATACTTTGTGCAAAATTTGG+TGG | + | chr4.4:23284246-23284265 | MS.gene33738:CDS | 30.0% | |
| ATCAAAACCAATTGTCTTGA+AGG | - | chr4.4:23284445-23284464 | None:intergenic | 30.0% | |
| ATCTACTTCATATCCATTTG+TGG | + | chr4.4:23284729-23284748 | MS.gene33738:intron | 30.0% | |
| ATGTTTCTTGTACACCTTTA+GGG | - | chr4.4:23285467-23285486 | None:intergenic | 30.0% | |
| CAAAATTCTGCTAAGGAAAT+GGG | - | chr4.4:23287350-23287369 | None:intergenic | 30.0% | |
| CAATTGCCAAAATTGTTTGT+CGG | - | chr4.4:23286751-23286770 | None:intergenic | 30.0% | |
| CGTATACTTTGTGCAAAATT+TGG | + | chr4.4:23284243-23284262 | MS.gene33738:CDS | 30.0% | |
| CTATACAATTTCAGACAACT+TGG | + | chr4.4:23284345-23284364 | MS.gene33738:CDS | 30.0% | |
| CTTATAATGAAGCTTACCAT+AGG | - | chr4.4:23286274-23286293 | None:intergenic | 30.0% | |
| GAAAAAAAATAGAGCTCCTT+GGG | - | chr4.4:23285550-23285569 | None:intergenic | 30.0% | |
| GAAGACATACAATAAAACCA+AGG | + | chr4.4:23283430-23283449 | MS.gene33738:CDS | 30.0% | |
| GAGGAATGTTAATAAGCAAA+AGG | - | chr4.4:23286557-23286576 | None:intergenic | 30.0% | |
| GATACTTGTGAAGATATTCT+AGG | - | chr4.4:23287246-23287265 | None:intergenic | 30.0% | |
| GGTAATTATCTAAATCACTG+AGG | - | chr4.4:23286879-23286898 | None:intergenic | 30.0% | |
| TAACTATTGTTGGAAATTCC+AGG | + | chr4.4:23284176-23284195 | MS.gene33738:intron | 30.0% | |
| TACTTTGTGCAAAATTTGGT+GGG | + | chr4.4:23284247-23284266 | MS.gene33738:CDS | 30.0% | |
| TCTACAAGAGAAACATACAA+AGG | + | chr4.4:23285247-23285266 | MS.gene33738:intron | 30.0% | |
| TGAACAAAATGCCATAAACT+TGG | + | chr4.4:23287477-23287496 | MS.gene33738:intron | 30.0% | |
| TGTCTAGAAATTAAAGGTTG+CGG | + | chr4.4:23283236-23283255 | MS.gene33738:intron | 30.0% | |
| TGTCTTGTATGGTTATGTTA+TGG | + | chr4.4:23284605-23284624 | MS.gene33738:intron | 30.0% | |
| TTACATTGACGTTGAACTTA+AGG | + | chr4.4:23282968-23282987 | MS.gene33738:CDS | 30.0% | |
| TTATGCACTCAGTTATTGTT+AGG | + | chr4.4:23285035-23285054 | MS.gene33738:intron | 30.0% | |
| TTATTCAGTTCATTGTCACA+TGG | + | chr4.4:23286644-23286663 | MS.gene33738:intron | 30.0% | |
| TTTACGATTACTGCATTAAG+GGG | + | chr4.4:23284125-23284144 | MS.gene33738:intron | 30.0% | |
| TTTAGATAATTACCATCCAG+AGG | + | chr4.4:23286885-23286904 | MS.gene33738:CDS | 30.0% | |
| TTTGTATGTTTCTCTTGTAG+AGG | - | chr4.4:23285248-23285267 | None:intergenic | 30.0% | |
| ! | ACAAAAGTATATGGGATTGT+TGG | + | chr4.4:23284375-23284394 | MS.gene33738:CDS | 30.0% |
| ! | ATCAGCTATCATTTTATCCA+TGG | - | chr4.4:23282614-23282633 | None:intergenic | 30.0% |
| ! | ATCCCATATACTTTTGTATC+AGG | - | chr4.4:23284372-23284391 | None:intergenic | 30.0% |
| ! | CATATTGCTTTAAATGGTAC+AGG | - | chr4.4:23283911-23283930 | None:intergenic | 30.0% |
| ! | CATCAGCATATTGCTTTAAA+TGG | - | chr4.4:23283917-23283936 | None:intergenic | 30.0% |
| ! | CATTTAAAGCAATATGCTGA+TGG | + | chr4.4:23283915-23283934 | MS.gene33738:intron | 30.0% |
| ! | CTATAGTAATGCTGTTTGAA+GGG | - | chr4.4:23284076-23284095 | None:intergenic | 30.0% |
| ! | GACCTGATACAAAAGTATAT+GGG | + | chr4.4:23284367-23284386 | MS.gene33738:CDS | 30.0% |
| ! | TACTCATCAACAGATTTTGT+GGG | + | chr4.4:23284516-23284535 | MS.gene33738:CDS | 30.0% |
| ! | TGCATTGAAATTTTACTCGT+TGG | + | chr4.4:23287709-23287728 | MS.gene33738:CDS | 30.0% |
| ! | TGTGTACATCAATTGTTTCT+TGG | + | chr4.4:23286107-23286126 | MS.gene33738:intron | 30.0% |
| ! | TTACTCATCAACAGATTTTG+TGG | + | chr4.4:23284515-23284534 | MS.gene33738:CDS | 30.0% |
| ! | TTTGAAGTCTGCAATTTCTA+AGG | + | chr4.4:23284905-23284924 | MS.gene33738:intron | 30.0% |
| !! | AAATAGCATACCTTTGAAAC+AGG | - | chr4.4:23286970-23286989 | None:intergenic | 30.0% |
| !! | CTTACAAACATGACTTGTTA+AGG | + | chr4.4:23284943-23284962 | MS.gene33738:intron | 30.0% |
| !! | GTAAGCTGTTTGTTGTTATT+GGG | + | chr4.4:23286175-23286194 | MS.gene33738:CDS | 30.0% |
| !! | TAAGCTGTTTGTTGTTATTG+GGG | + | chr4.4:23286176-23286195 | MS.gene33738:CDS | 30.0% |
| !! | TTCAACTTCTTTTAACTCTG+GGG | - | chr4.4:23286306-23286325 | None:intergenic | 30.0% |
| !! | TTCAAGAGTCTAGTCATTTT+TGG | - | chr4.4:23287755-23287774 | None:intergenic | 30.0% |
| !!! | CAATCGTTTTTGTTTTGTGT+TGG | + | chr4.4:23285680-23285699 | MS.gene33738:intron | 30.0% |
| !!! | GATATTTTGAAACAAGATCC+TGG | - | chr4.4:23286344-23286363 | None:intergenic | 30.0% |
| !!! | TATTTTGATGGCCAAGTTTA+TGG | - | chr4.4:23287491-23287510 | None:intergenic | 30.0% |
| !!! | TTCAAGACAATTGGTTTTGA+TGG | + | chr4.4:23284444-23284463 | MS.gene33738:CDS | 30.0% |
| AAAGTACAAACCACTGAAAC+AGG | - | chr4.4:23287922-23287941 | None:intergenic | 35.0% | |
| AAATTCCAGGTTCCATTCAT+TGG | + | chr4.4:23284189-23284208 | MS.gene33738:intron | 35.0% | |
| AACCTGTAAGTGAACAAGAA+CGG | - | chr4.4:23282751-23282770 | None:intergenic | 35.0% | |
| AACTGTTAGGAGTTAGAACA+GGG | - | chr4.4:23285329-23285348 | None:intergenic | 35.0% | |
| AAGACACGTATGTTTGATAG+TGG | + | chr4.4:23283619-23283638 | MS.gene33738:intron | 35.0% | |
| AAGGAGATAATGTGCAACAA+AGG | - | chr4.4:23285624-23285643 | None:intergenic | 35.0% | |
| AAGTACAAACCACTGAAACA+GGG | - | chr4.4:23287921-23287940 | None:intergenic | 35.0% | |
| AATAAAGACTTCCATTCCCT+TGG | - | chr4.4:23285216-23285235 | None:intergenic | 35.0% | |
| AATATGTTTGACAAGGAGAG+CGG | - | chr4.4:23286777-23286796 | None:intergenic | 35.0% | |
| AATCGGAAAATCCTATAGCA+TGG | - | chr4.4:23283164-23283183 | None:intergenic | 35.0% | |
| AATGAAGCCTTCAAGACAAT+TGG | + | chr4.4:23284435-23284454 | MS.gene33738:CDS | 35.0% | |
| AATGATGATTTCCAAGGGAA+TGG | + | chr4.4:23285202-23285221 | MS.gene33738:intron | 35.0% | |
| ACAGCACACCGTAAAATATA+AGG | - | chr4.4:23283682-23283701 | None:intergenic | 35.0% | |
| ACAGGCCAAACATAAATATG+TGG | - | chr4.4:23287564-23287583 | None:intergenic | 35.0% | |
| ACATATTTATGTTTGGCCTG+TGG | + | chr4.4:23287563-23287582 | MS.gene33738:intron | 35.0% | |
| ACTCATTCTTTAAGTGGAAG+TGG | + | chr4.4:23287510-23287529 | MS.gene33738:intron | 35.0% | |
| AGAGATCTGAACAGTGAAAA+AGG | - | chr4.4:23285643-23285662 | None:intergenic | 35.0% | |
| ATCTTCATGAGATGCTTTCT+TGG | + | chr4.4:23286426-23286445 | MS.gene33738:intron | 35.0% | |
| ATGCCAATGATGATTTCCAA+GGG | + | chr4.4:23285197-23285216 | MS.gene33738:intron | 35.0% | |
| ATGGCTGTACTAAACCAATT+AGG | + | chr4.4:23286992-23287011 | MS.gene33738:intron | 35.0% | |
| ATTCCCTTGGAAATCATCAT+TGG | - | chr4.4:23285203-23285222 | None:intergenic | 35.0% | |
| ATTGATAGACAGCTAAGTTG+AGG | + | chr4.4:23283790-23283809 | MS.gene33738:intron | 35.0% | |
| ATTGTTAGGAACCCAAGAAT+TGG | + | chr4.4:23285049-23285068 | MS.gene33738:intron | 35.0% | |
| CAAATGTGCTAACATGAGTT+TGG | - | chr4.4:23286623-23286642 | None:intergenic | 35.0% | |
| CAGCACACCGTAAAATATAA+GGG | - | chr4.4:23283681-23283700 | None:intergenic | 35.0% | |
| CATTTCTTGCATGTCTTGTA+TGG | + | chr4.4:23284594-23284613 | MS.gene33738:intron | 35.0% | |
| CCAAAATTCTGCTAAGGAAA+TGG | - | chr4.4:23287351-23287370 | None:intergenic | 35.0% | |
| CCACTAACAATAATAGCACA+AGG | - | chr4.4:23287019-23287038 | None:intergenic | 35.0% | |
| CGACAATATGAGCATTATAC+TGG | + | chr4.4:23287839-23287858 | MS.gene33738:CDS | 35.0% | |
| CTAGCAAACACAACTTCAAT+CGG | + | chr4.4:23286919-23286938 | MS.gene33738:CDS | 35.0% | |
| GAAGGCTTCATTGAACAATA+TGG | - | chr4.4:23284427-23284446 | None:intergenic | 35.0% | |
| GAATTGCAAAAGGTTATTCC+AGG | + | chr4.4:23286323-23286342 | MS.gene33738:intron | 35.0% | |
| GAATTGGTTACACAGTCAAT+AGG | + | chr4.4:23285913-23285932 | MS.gene33738:intron | 35.0% | |
| GAGTGTATGAGACTTGAAAT+TGG | - | chr4.4:23284050-23284069 | None:intergenic | 35.0% | |
| GCAAAAGATGAAACATGAAC+AGG | - | chr4.4:23286512-23286531 | None:intergenic | 35.0% | |
| GCAGGTAAACATAATGATAG+TGG | + | chr4.4:23286129-23286148 | MS.gene33738:intron | 35.0% | |
| GGAAAAAAAATAGAGCTCCT+TGG | - | chr4.4:23285551-23285570 | None:intergenic | 35.0% | |
| GGCTATAACACAGATTATGT+TGG | + | chr4.4:23285982-23286001 | MS.gene33738:CDS | 35.0% | |
| GGTGTACAAGAAACATTAAG+CGG | + | chr4.4:23285471-23285490 | MS.gene33738:intron | 35.0% | |
| GTAATCAGCTTCTAATTCCA+TGG | - | chr4.4:23282952-23282971 | None:intergenic | 35.0% | |
| TAACTGTTAGGAGTTAGAAC+AGG | - | chr4.4:23285330-23285349 | None:intergenic | 35.0% | |
| TAGAACAGGGAGAATAAGTT+AGG | - | chr4.4:23285316-23285335 | None:intergenic | 35.0% | |
| TATGCCAATGATGATTTCCA+AGG | + | chr4.4:23285196-23285215 | MS.gene33738:intron | 35.0% | |
| TCTTCATGAGATGCTTTCTT+GGG | + | chr4.4:23286427-23286446 | MS.gene33738:intron | 35.0% | |
| TGATGAAACACCTGTTTCAA+AGG | + | chr4.4:23286957-23286976 | MS.gene33738:CDS | 35.0% | |
| TGCATTTGCTTACATTGCAT+TGG | - | chr4.4:23283869-23283888 | None:intergenic | 35.0% | |
| TGGCTGTACTAAACCAATTA+GGG | + | chr4.4:23286993-23287012 | MS.gene33738:intron | 35.0% | |
| TTAATCTGCGTCCCTATAAT+GGG | + | chr4.4:23282583-23282602 | MS.gene33738:CDS | 35.0% | |
| TTCATATCCATTTGTGGCTT+GGG | + | chr4.4:23284735-23284754 | MS.gene33738:intron | 35.0% | |
| TTGAAAGAAGCAGAAGAATC+TGG | + | chr4.4:23287770-23287789 | MS.gene33738:CDS | 35.0% | |
| TTGCAAGAATACAAGCAACT+GGG | + | chr4.4:23283513-23283532 | MS.gene33738:CDS | 35.0% | |
| TTGCTTGTATTCTTGCAACA+AGG | - | chr4.4:23283511-23283530 | None:intergenic | 35.0% | |
| TTGTAAGAAGACCAACAGAT+GGG | + | chr4.4:23285950-23285969 | MS.gene33738:CDS | 35.0% | |
| ! | AAAAGGATGGTAATGCATAC+AGG | - | chr4.4:23286540-23286559 | None:intergenic | 35.0% |
| ! | AAAGGATGGTAATGCATACA+GGG | - | chr4.4:23286539-23286558 | None:intergenic | 35.0% |
| ! | AAAGTACTTCAAGGTTGGTT+AGG | + | chr4.4:23283750-23283769 | MS.gene33738:intron | 35.0% |
| ! | AAATAGCAAAAAGGCGTGTT+TGG | - | chr4.4:23283107-23283126 | None:intergenic | 35.0% |
| ! | ACAGGTGTTTCATCAACTTT+TGG | - | chr4.4:23286952-23286971 | None:intergenic | 35.0% |
| ! | ACATTTTCTTAGGCCCAAAT+GGG | + | chr4.4:23282872-23282891 | MS.gene33738:intron | 35.0% |
| ! | CCATTTCCTTAGCAGAATTT+TGG | + | chr4.4:23287348-23287367 | MS.gene33738:intron | 35.0% |
| ! | CCTTGTGCTATTATTGTTAG+TGG | + | chr4.4:23287016-23287035 | MS.gene33738:intron | 35.0% |
| ! | GCGTCATGATGTGATTTTAT+TGG | - | chr4.4:23287205-23287224 | None:intergenic | 35.0% |
| ! | GCTATAGTAATGCTGTTTGA+AGG | - | chr4.4:23284077-23284096 | None:intergenic | 35.0% |
| ! | GCTTTTCCGACAAACAATTT+TGG | + | chr4.4:23286742-23286761 | MS.gene33738:intron | 35.0% |
| ! | GGACCTGATACAAAAGTATA+TGG | + | chr4.4:23284366-23284385 | MS.gene33738:CDS | 35.0% |
| ! | TACATCAATTGTTTCTTGGC+AGG | + | chr4.4:23286111-23286130 | MS.gene33738:intron | 35.0% |
| ! | TACATTTTCTTAGGCCCAAA+TGG | + | chr4.4:23282871-23282890 | MS.gene33738:intron | 35.0% |
| ! | TAGCTGTCATTTGATAAAGC+TGG | + | chr4.4:23283292-23283311 | MS.gene33738:intron | 35.0% |
| ! | TGCTATAGGATTTTCCGATT+TGG | + | chr4.4:23283164-23283183 | MS.gene33738:intron | 35.0% |
| ! | TGTTGGTCTACTAAGTGTTT+AGG | + | chr4.4:23284767-23284786 | MS.gene33738:intron | 35.0% |
| ! | TTATATTTTACGGTGTGCTG+TGG | + | chr4.4:23283681-23283700 | MS.gene33738:intron | 35.0% |
| ! | TTCTAGGAACCAACTTAACA+CGG | - | chr4.4:23287230-23287249 | None:intergenic | 35.0% |
| !! | AGAGAACTTGCTGATGTAAT+CGG | + | chr4.4:23286838-23286857 | MS.gene33738:CDS | 35.0% |
| !! | CCATTCATTGGACTTGTTAT+GGG | + | chr4.4:23284201-23284220 | MS.gene33738:CDS | 35.0% |
| !! | CTATTTCTGCTATTGAGGAT+GGG | + | chr4.4:23286007-23286026 | MS.gene33738:CDS | 35.0% |
| !! | GGTAAGCTGTTTGTTGTTAT+TGG | + | chr4.4:23286174-23286193 | MS.gene33738:CDS | 35.0% |
| !! | TCCATTCATTGGACTTGTTA+TGG | + | chr4.4:23284200-23284219 | MS.gene33738:CDS | 35.0% |
| !! | TGGTAAAAGTACTTCAAGGT+TGG | + | chr4.4:23283745-23283764 | MS.gene33738:intron | 35.0% |
| !! | TTCCTTAGCAGAATTTTGGT+TGG | + | chr4.4:23287352-23287371 | MS.gene33738:intron | 35.0% |
| !! | TTTGGTGGGTATCTTACTTT+TGG | + | chr4.4:23284261-23284280 | MS.gene33738:CDS | 35.0% |
| !!! | GAATTTTGATTGGTTGGTGT+AGG | - | chr4.4:23285132-23285151 | None:intergenic | 35.0% |
| !!! | TCCTTAGCAGAATTTTGGTT+GGG | + | chr4.4:23287353-23287372 | MS.gene33738:intron | 35.0% |
| !!! | TGGTAGAAGTGCTTTTGTTT+GGG | - | chr4.4:23287544-23287563 | None:intergenic | 35.0% |
| AAACAGGGACAACGAAATCA+GGG | - | chr4.4:23287906-23287925 | None:intergenic | 40.0% | |
| AACCCAAGAATTGGATTCCA+AGG | + | chr4.4:23285058-23285077 | MS.gene33738:intron | 40.0% | |
| AACCTCGTCACAACACTTAA+GGG | - | chr4.4:23285784-23285803 | None:intergenic | 40.0% | |
| AATGAAGCTTACCATAGGTG+CGG | - | chr4.4:23286269-23286288 | None:intergenic | 40.0% | |
| ACAAACAGCTTACCAGCTAA+TGG | - | chr4.4:23286168-23286187 | None:intergenic | 40.0% | |
| ACAGGACTGGAGATGTTTAT+TGG | + | chr4.4:23287806-23287825 | MS.gene33738:CDS | 40.0% | |
| ACCCAAGAATTGGATTCCAA+GGG | + | chr4.4:23285059-23285078 | MS.gene33738:intron | 40.0% | |
| AGAAATGCCCAATGCCAAAT+CGG | - | chr4.4:23283181-23283200 | None:intergenic | 40.0% | |
| AGGTGATGAAAATCAACGCT+TGG | + | chr4.4:23282911-23282930 | MS.gene33738:CDS | 40.0% | |
| AGTTCTATGACTCTATACGC+GGG | + | chr4.4:23283408-23283427 | MS.gene33738:CDS | 40.0% | |
| ATACATACCACCTTCCCATT+TGG | - | chr4.4:23282889-23282908 | None:intergenic | 40.0% | |
| ATCAACGCTTGGATGCATTA+CGG | + | chr4.4:23282922-23282941 | MS.gene33738:CDS | 40.0% | |
| CAATCTTTGCACCATGCTAT+AGG | + | chr4.4:23283150-23283169 | MS.gene33738:intron | 40.0% | |
| CAGTTCTATGACTCTATACG+CGG | + | chr4.4:23283407-23283426 | MS.gene33738:CDS | 40.0% | |
| CCCATAACAAGTCCAATGAA+TGG | - | chr4.4:23284204-23284223 | None:intergenic | 40.0% | |
| CTATGATGAGATGCAATTGC+TGG | + | chr4.4:23287265-23287284 | MS.gene33738:intron | 40.0% | |
| CTTCATATCCATTTGTGGCT+TGG | + | chr4.4:23284734-23284753 | MS.gene33738:intron | 40.0% | |
| GAGGTAGTTGTTGTATCTAG+TGG | + | chr4.4:23286034-23286053 | MS.gene33738:intron | 40.0% | |
| GATAATTACCATCCAGAGGA+TGG | + | chr4.4:23286889-23286908 | MS.gene33738:CDS | 40.0% | |
| GATGTACACAACAACATCTC+AGG | - | chr4.4:23286097-23286116 | None:intergenic | 40.0% | |
| GATTACATCAGCAAGTTCTC+TGG | - | chr4.4:23286839-23286858 | None:intergenic | 40.0% | |
| GCTTATGGTGCAAAAGAGAA+AGG | + | chr4.4:23286222-23286241 | MS.gene33738:CDS | 40.0% | |
| GGCTTGGGTTATTGAAATGT+TGG | + | chr4.4:23284750-23284769 | MS.gene33738:intron | 40.0% | |
| GTGAGATGAAACAATGACCT+TGG | - | chr4.4:23283450-23283469 | None:intergenic | 40.0% | |
| GTTAATCTGCGTCCCTATAA+TGG | + | chr4.4:23282582-23282601 | MS.gene33738:CDS | 40.0% | |
| GTTGCAAGAATACAAGCAAC+TGG | + | chr4.4:23283512-23283531 | MS.gene33738:CDS | 40.0% | |
| GTTGTAAGAAGACCAACAGA+TGG | + | chr4.4:23285949-23285968 | MS.gene33738:CDS | 40.0% | |
| TAACCAAATACCTTAGCCAC+TGG | - | chr4.4:23285810-23285829 | None:intergenic | 40.0% | |
| TAAGCTGATAGACTATGCCA+TGG | + | chr4.4:23287871-23287890 | MS.gene33738:intron | 40.0% | |
| TAATAGCACAAGGCCCTAAT+TGG | - | chr4.4:23287009-23287028 | None:intergenic | 40.0% | |
| TACATACCACCTTCCCATTT+GGG | - | chr4.4:23282888-23282907 | None:intergenic | 40.0% | |
| TAGAACTGATGAGCAACCTT+TGG | - | chr4.4:23283395-23283414 | None:intergenic | 40.0% | |
| TCAAACTCTAGTTGTGTGAG+AGG | - | chr4.4:23285715-23285734 | None:intergenic | 40.0% | |
| TCAATAACCCAAGCCACAAA+TGG | - | chr4.4:23284745-23284764 | None:intergenic | 40.0% | |
| TCCCAACCAAAATTCTGCTA+AGG | - | chr4.4:23287357-23287376 | None:intergenic | 40.0% | |
| TCCCTTGGAATCCAATTCTT+GGG | - | chr4.4:23285063-23285082 | None:intergenic | 40.0% | |
| TGCAACAGATCCTTAAGTGT+AGG | - | chr4.4:23284324-23284343 | None:intergenic | 40.0% | |
| TGCAAGAATACAAGCAACTG+GGG | + | chr4.4:23283514-23283533 | MS.gene33738:CDS | 40.0% | |
| TGTGGCGTTTCTATTCTAGA+TGG | + | chr4.4:23287581-23287600 | MS.gene33738:intron | 40.0% | |
| TGTTTGTCGGAAAAGCCATA+TGG | - | chr4.4:23286738-23286757 | None:intergenic | 40.0% | |
| TTCCCTTGGAATCCAATTCT+TGG | - | chr4.4:23285064-23285083 | None:intergenic | 40.0% | |
| TTCTTTAAGTGGAAGTGGAG+CGG | + | chr4.4:23287515-23287534 | MS.gene33738:intron | 40.0% | |
| ! | AAGGATGGTAATGCATACAG+GGG | - | chr4.4:23286538-23286557 | None:intergenic | 40.0% |
| ! | AGAAGTGATTAGTTCCCTGA+AGG | - | chr4.4:23287674-23287693 | None:intergenic | 40.0% |
| ! | AGACTATGCCATGGACTTTT+TGG | + | chr4.4:23287880-23287899 | MS.gene33738:intron | 40.0% |
| ! | ATCTAGAATAGAAACGCCAC+AGG | - | chr4.4:23287582-23287601 | None:intergenic | 40.0% |
| ! | ATGAGAGTAAGTTGACCTTC+AGG | + | chr4.4:23287656-23287675 | MS.gene33738:intron | 40.0% |
| ! | ATGAGCAACCTTTGGAGATA+TGG | - | chr4.4:23283387-23283406 | None:intergenic | 40.0% |
| ! | CAACAGATTTTGTGGGATTC+AGG | + | chr4.4:23284523-23284542 | MS.gene33738:CDS | 40.0% |
| ! | GTTTGCTAATGAGCTATGTG+TGG | + | chr4.4:23284692-23284711 | MS.gene33738:intron | 40.0% |
| ! | TGAGAGTAAGTTGACCTTCA+GGG | + | chr4.4:23287657-23287676 | MS.gene33738:intron | 40.0% |
| ! | TTCTTTAGGAACTCATCTGC+TGG | + | chr4.4:23283197-23283216 | MS.gene33738:intron | 40.0% |
| ! | TTGGCATTGGGCATTTCTTT+AGG | + | chr4.4:23283183-23283202 | MS.gene33738:intron | 40.0% |
| !! | AACTTCTTTTAACTCTGGGG+AGG | - | chr4.4:23286303-23286322 | None:intergenic | 40.0% |
| !! | GCTATTTCTGCTATTGAGGA+TGG | + | chr4.4:23286006-23286025 | MS.gene33738:CDS | 40.0% |
| !! | TGGTGCTATTTCTGCTATTG+AGG | + | chr4.4:23286002-23286021 | MS.gene33738:CDS | 40.0% |
| !!! | AGGATTTTCCGATTTGGCAT+TGG | + | chr4.4:23283170-23283189 | MS.gene33738:intron | 40.0% |
| !!! | GGATTTTCCGATTTGGCATT+GGG | + | chr4.4:23283171-23283190 | MS.gene33738:intron | 40.0% |
| !!! | GTGGTAGAAGTGCTTTTGTT+TGG | - | chr4.4:23287545-23287564 | None:intergenic | 40.0% |
| AACCCTTGCTTAAATGCCCA+AGG | + | chr4.4:23285531-23285550 | MS.gene33738:intron | 45.0% | |
| AACTACAATCGATGCCTAGC+AGG | - | chr4.4:23284989-23285008 | None:intergenic | 45.0% | |
| AATCAGGGCCAAAAAGTCCA+TGG | - | chr4.4:23287891-23287910 | None:intergenic | 45.0% | |
| AGCCACTATTGTAACAGGAC+TGG | + | chr4.4:23287793-23287812 | MS.gene33738:CDS | 45.0% | |
| CAACCTCGTCACAACACTTA+AGG | - | chr4.4:23285785-23285804 | None:intergenic | 45.0% | |
| CAAGTCCAATGAATGGAACC+TGG | - | chr4.4:23284197-23284216 | None:intergenic | 45.0% | |
| CCAATCAACTTCCCATCTGT+TGG | - | chr4.4:23285964-23285983 | None:intergenic | 45.0% | |
| CCATGGTTTCGCCCATTATA+GGG | - | chr4.4:23282597-23282616 | None:intergenic | 45.0% | |
| CTCCAGTCCTGTTACAATAG+TGG | - | chr4.4:23287798-23287817 | None:intergenic | 45.0% | |
| CTCCTTGGGCATTTAAGCAA+GGG | - | chr4.4:23285536-23285555 | None:intergenic | 45.0% | |
| GAAACAGGGACAACGAAATC+AGG | - | chr4.4:23287907-23287926 | None:intergenic | 45.0% | |
| GAATCATACCATCCTCTGGA+TGG | - | chr4.4:23286900-23286919 | None:intergenic | 45.0% | |
| GAGCATTATACTGGATTGCC+AGG | + | chr4.4:23287848-23287867 | MS.gene33738:CDS | 45.0% | |
| GCATAGTCTATCAGCTTACC+TGG | - | chr4.4:23287869-23287888 | None:intergenic | 45.0% | |
| GCTAGAATCATACCATCCTC+TGG | - | chr4.4:23286904-23286923 | None:intergenic | 45.0% | |
| GGCGCGGATGTTTCAAATTA+TGG | + | chr4.4:23283583-23283602 | MS.gene33738:CDS | 45.0% | |
| GGTGATTTACTGTGACTGAC+AGG | - | chr4.4:23284405-23284424 | None:intergenic | 45.0% | |
| GTGCAAAAGAGAAAGGAGCA+AGG | + | chr4.4:23286229-23286248 | MS.gene33738:CDS | 45.0% | |
| TAGGAACCAACTTAACACGG+TGG | - | chr4.4:23287227-23287246 | None:intergenic | 45.0% | |
| TCAGCGTTGCATTCACCATA+TGG | + | chr4.4:23286720-23286739 | MS.gene33738:intron | 45.0% | |
| TCCAGGTCAACCTACACTTA+AGG | + | chr4.4:23284311-23284330 | MS.gene33738:CDS | 45.0% | |
| TCCATGGTTTCGCCCATTAT+AGG | - | chr4.4:23282598-23282617 | None:intergenic | 45.0% | |
| TGCCGTTCTTGTTCACTTAC+AGG | + | chr4.4:23282746-23282765 | MS.gene33738:CDS | 45.0% | |
| TGGGAAGGTGGTATGTATGA+AGG | + | chr4.4:23282891-23282910 | MS.gene33738:CDS | 45.0% | |
| TGTTCCTGCCATATCTCCAA+AGG | + | chr4.4:23283376-23283395 | MS.gene33738:intron | 45.0% | |
| TTGCCAAGATCGTCAACTGA+CGG | - | chr4.4:23283488-23283507 | None:intergenic | 45.0% | |
| TTTCGTTGTCCCTGTTTCAG+TGG | + | chr4.4:23287909-23287928 | MS.gene33738:intron | 45.0% | |
| TTTCTTAGGCCCAAATGGGA+AGG | + | chr4.4:23282876-23282895 | MS.gene33738:intron | 45.0% | |
| TTTGGAGATATGGCAGGAAC+AGG | - | chr4.4:23283377-23283396 | None:intergenic | 45.0% | |
| ! | ACAGCTAAGTTGAGGAAGAG+AGG | + | chr4.4:23283798-23283817 | MS.gene33738:intron | 45.0% |
| ! | ACTTTTGGTACACTCGAGTC+AGG | + | chr4.4:23284276-23284295 | MS.gene33738:CDS | 45.0% |
| ! | AGCAATATGCTGATGGTGCT+AGG | + | chr4.4:23283922-23283941 | MS.gene33738:intron | 45.0% |
| ! | AGGATGGTAATGCATACAGG+GGG | - | chr4.4:23286537-23286556 | None:intergenic | 45.0% |
| ! | CCAACAGATGGGAAGTTGAT+TGG | + | chr4.4:23285961-23285980 | MS.gene33738:CDS | 45.0% |
| ! | CTTTTGGTACACTCGAGTCA+GGG | + | chr4.4:23284277-23284296 | MS.gene33738:CDS | 45.0% |
| ! | GAATGCAACGCTGATTGAAG+CGG | - | chr4.4:23286714-23286733 | None:intergenic | 45.0% |
| ! | GATCCAGTGGCTAAGGTATT+TGG | + | chr4.4:23285804-23285823 | MS.gene33738:intron | 45.0% |
| ! | TCCTTAAGTGTAGGTTGACC+TGG | - | chr4.4:23284315-23284334 | None:intergenic | 45.0% |
| ! | TCTGGAGCCACTATTGTAAC+AGG | + | chr4.4:23287788-23287807 | MS.gene33738:CDS | 45.0% |
| ! | TTTTGGTACACTCGAGTCAG+GGG | + | chr4.4:23284278-23284297 | MS.gene33738:CDS | 45.0% |
| !! | AAACATAGGAAGTGCTGTCG+AGG | + | chr4.4:23284815-23284834 | MS.gene33738:intron | 45.0% |
| !! | CTGTTTGTTGTTATTGGGGC+CGG | + | chr4.4:23286180-23286199 | MS.gene33738:CDS | 45.0% |
| !! | GAACTTGCTGATGTAATCGG+TGG | + | chr4.4:23286841-23286860 | MS.gene33738:CDS | 45.0% |
| !! | TGCTAGGCATCGATTGTAGT+TGG | + | chr4.4:23284988-23285007 | MS.gene33738:intron | 45.0% |
| !!! | ATTCTTTTAATTTTATTAAA+TGG | + | chr4.4:23286394-23286413 | MS.gene33738:intron | 5.0% |
| AAAGATTGCAACGACTGCCG+TGG | + | chr4.4:23283547-23283566 | MS.gene33738:CDS | 50.0% | |
| ACTCCGTCAGTTGACGATCT+TGG | + | chr4.4:23283482-23283501 | MS.gene33738:CDS | 50.0% | |
| ATGACGCCACCGTGTTAAGT+TGG | + | chr4.4:23287218-23287237 | MS.gene33738:intron | 50.0% | |
| CAGCGTTACCATTCCTCACA+AGG | + | chr4.4:23285752-23285771 | MS.gene33738:intron | 50.0% | |
| CGTTACCATTCCTCACAAGG+AGG | + | chr4.4:23285755-23285774 | MS.gene33738:CDS | 50.0% | |
| GCTCCTTGGGCATTTAAGCA+AGG | - | chr4.4:23285537-23285556 | None:intergenic | 50.0% | |
| GTGATTGCAAACCGCACCTA+TGG | + | chr4.4:23286255-23286274 | MS.gene33738:CDS | 50.0% | |
| TCAAGGGATCTGAGCCCTAA+AGG | + | chr4.4:23285450-23285469 | MS.gene33738:intron | 50.0% | |
| ! | ACAGCTGTTTCGCCATTAGC+TGG | + | chr4.4:23286153-23286172 | MS.gene33738:CDS | 50.0% |
| ! | AGCCCTTAAGTGTTGTGACG+AGG | + | chr4.4:23285779-23285798 | MS.gene33738:CDS | 50.0% |
| ! | GCAACCTTTGGAGATATGGC+AGG | - | chr4.4:23283383-23283402 | None:intergenic | 50.0% |
| ! | GGATGCATTACGGTTAGCCA+TGG | + | chr4.4:23282932-23282951 | MS.gene33738:CDS | 50.0% |
| ! | TTGTGACGAGGTTGATCCAG+TGG | + | chr4.4:23285791-23285810 | MS.gene33738:CDS | 50.0% |
| !! | CCCTATAATGGGCGAAACCA+TGG | + | chr4.4:23282594-23282613 | MS.gene33738:CDS | 50.0% |
| !! | TGGACTTGTTATGGGCGACA+GGG | + | chr4.4:23284209-23284228 | MS.gene33738:CDS | 50.0% |
| !! | TTGGACTTGTTATGGGCGAC+AGG | + | chr4.4:23284208-23284227 | MS.gene33738:CDS | 50.0% |
| !! | TTTGTTGTTATTGGGGCCGG+TGG | + | chr4.4:23286183-23286202 | MS.gene33738:CDS | 50.0% |
| CGCCACATCAGTGATCTCCA+CGG | - | chr4.4:23283567-23283586 | None:intergenic | 55.0% | |
| CTTAGGCCCAAATGGGAAGG+TGG | + | chr4.4:23282879-23282898 | MS.gene33738:intron | 55.0% | |
| TCAGGGGTAGTTTCAGCTCC+AGG | + | chr4.4:23284294-23284313 | MS.gene33738:CDS | 55.0% | |
| TGCCGTGGAGATCACTGATG+TGG | + | chr4.4:23283562-23283581 | MS.gene33738:CDS | 55.0% | |
| TGGAGATCACTGATGTGGCG+CGG | + | chr4.4:23283567-23283586 | MS.gene33738:CDS | 55.0% | |
| TTAAGGGCTGCCTCCTTGTG+AGG | - | chr4.4:23285768-23285787 | None:intergenic | 55.0% | |
| ! | CGAGGTTGATCCAGTGGCTA+AGG | + | chr4.4:23285797-23285816 | MS.gene33738:CDS | 55.0% |
| !! | GCTATTGAGGATGGGCTACG+AGG | + | chr4.4:23286015-23286034 | MS.gene33738:CDS | 55.0% |
| !! | GCTGGGAAGGCACTTGCTTA+TGG | + | chr4.4:23286207-23286226 | MS.gene33738:CDS | 55.0% |
| !! | GGACTTGTTATGGGCGACAG+GGG | + | chr4.4:23284210-23284229 | MS.gene33738:CDS | 55.0% |
| AAGTGCCTTCCCAGCACCAC+CGG | - | chr4.4:23286202-23286221 | None:intergenic | 60.0% | |
| GGCTGCCTCCTTGTGAGGAA+TGG | - | chr4.4:23285763-23285782 | None:intergenic | 60.0% | |
| TTATTGGGGCCGGTGGTGCT+GGG | + | chr4.4:23286190-23286209 | MS.gene33738:CDS | 60.0% | |
| GTTATTGGGGCCGGTGGTGC+TGG | + | chr4.4:23286189-23286208 | MS.gene33738:CDS | 65.0% | |
| ! | TGGGGCCGGTGGTGCTGGGA+AGG | + | chr4.4:23286194-23286213 | MS.gene33738:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 23282565 | 23288042 | 23282565 | ID=MS.gene33738 |
| chr4.4 | mRNA | 23282565 | 23288042 | 23282565 | ID=MS.gene33738.t1;Parent=MS.gene33738 |
| chr4.4 | exon | 23282565 | 23282767 | 23282565 | ID=MS.gene33738.t1.exon1;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23282565 | 23282767 | 23282565 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23282884 | 23282989 | 23282884 | ID=MS.gene33738.t1.exon2;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23282884 | 23282989 | 23282884 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23283398 | 23283616 | 23283398 | ID=MS.gene33738.t1.exon3;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23283398 | 23283616 | 23283398 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23284198 | 23284544 | 23284198 | ID=MS.gene33738.t1.exon4;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23284198 | 23284544 | 23284198 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23285755 | 23285818 | 23285755 | ID=MS.gene33738.t1.exon5;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23285755 | 23285818 | 23285755 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23285928 | 23286036 | 23285928 | ID=MS.gene33738.t1.exon6;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23285928 | 23286036 | 23285928 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23286133 | 23286276 | 23286133 | ID=MS.gene33738.t1.exon7;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23286133 | 23286276 | 23286133 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23286830 | 23286978 | 23286830 | ID=MS.gene33738.t1.exon8;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23286830 | 23286978 | 23286830 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23287707 | 23287869 | 23287707 | ID=MS.gene33738.t1.exon9;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23287707 | 23287869 | 23287707 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| chr4.4 | exon | 23288002 | 23288042 | 23288002 | ID=MS.gene33738.t1.exon10;Parent=MS.gene33738.t1 |
| chr4.4 | CDS | 23288002 | 23288042 | 23288002 | ID=cds.MS.gene33738.t1;Parent=MS.gene33738.t1 |
| Gene Sequence |
| Protein sequence |
