Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33772.t1 | XP_013457069.1 | 97.9 | 893 | 18 | 1 | 1 | 892 | 66 | 958 | 0.00E+00 | 1734.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33772.t1 | Q5YDB6 | 60.0 | 898 | 326 | 12 | 3 | 884 | 86 | 966 | 2.2e-290 | 999.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33772.t1 | A0A072UZ11 | 97.9 | 893 | 18 | 1 | 1 | 892 | 66 | 958 | 0.0e+00 | 1734.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050257 | MS.gene33772 | 0.813804 | 2.13E-51 | -1.69E-46 |
| MS.gene050258 | MS.gene33772 | 0.811739 | 6.02E-51 | -1.69E-46 |
| MS.gene052498 | MS.gene33772 | 0.952986 | 7.39E-111 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33772.t1 | MTR_4g089010 | 97.872 | 893 | 18 | 1 | 1 | 892 | 66 | 958 | 0.0 | 1809 |
| MS.gene33772.t1 | MTR_7g067540 | 44.782 | 757 | 357 | 14 | 3 | 758 | 71 | 767 | 0.0 | 595 |
| MS.gene33772.t1 | MTR_4g089000 | 66.957 | 115 | 33 | 1 | 783 | 892 | 48 | 162 | 6.64e-40 | 145 |
| MS.gene33772.t1 | MTR_4g089000 | 64.000 | 100 | 31 | 2 | 31 | 127 | 11 | 108 | 9.35e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33772.t1 | AT4G21670 | 60.874 | 892 | 318 | 13 | 8 | 884 | 91 | 966 | 0.0 | 1045 |
| MS.gene33772.t1 | AT5G01270 | 46.262 | 709 | 310 | 16 | 10 | 707 | 78 | 726 | 0.0 | 575 |
| MS.gene33772.t1 | AT5G01270 | 46.262 | 709 | 310 | 16 | 10 | 707 | 78 | 726 | 0.0 | 575 |
Find 232 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGAACCATTGGCTTTAC+TGG | 0.208461 | 4.3:-23877408 | None:intergenic |
| GTAGATCCACAACGAATTTC+TGG | 0.232662 | 4.3:+23874714 | MS.gene33772:CDS |
| AGAAGCCTTCGCCTTGTATC+TGG | 0.233500 | 4.3:-23877504 | None:intergenic |
| CCTAGTTATCATTCGTTATC+TGG | 0.234840 | 4.3:+23877970 | MS.gene33772:CDS |
| TATGTGAATCAGGCCATTTC+AGG | 0.240267 | 4.3:+23882027 | MS.gene33772:intron |
| CCGTATCAGCGGTCGAACTA+TGG | 0.244363 | 4.3:-23874877 | None:intergenic |
| GAAATGTTGCTTGCAATGTT+AGG | 0.247371 | 4.3:+23876421 | MS.gene33772:CDS |
| GCCATCAACCTTAGAGAAAA+AGG | 0.251095 | 4.3:-23877754 | None:intergenic |
| TTCTCTTGTCAAGGGATTGC+TGG | 0.258532 | 4.3:-23882133 | None:intergenic |
| ATGACGACAGACCATGTTTC+TGG | 0.264090 | 4.3:+23874529 | MS.gene33772:CDS |
| TCAATTACTAACGCCATCTT+TGG | 0.279396 | 4.3:-23876158 | None:intergenic |
| ATAAATTCAAAAGAACTATT+AGG | 0.319906 | 4.3:+23875487 | MS.gene33772:CDS |
| GAATTTATCAAATTTGAATC+TGG | 0.323700 | 4.3:-23875472 | None:intergenic |
| CTGCAGCGATTCGCATCTTC+TGG | 0.334001 | 4.3:+23882091 | MS.gene33772:CDS |
| AACACCAGTTGCAGTATTAC+AGG | 0.334968 | 4.3:+23878576 | MS.gene33772:CDS |
| CTCTTGAGCGATCATCTCTA+TGG | 0.336726 | 4.3:-23877933 | None:intergenic |
| TAACCGTTGTCATTTGCATT+AGG | 0.342914 | 4.3:-23880545 | None:intergenic |
| GAGATAGATGGCCAGGTCTA+TGG | 0.343135 | 4.3:+23881459 | MS.gene33772:CDS |
| CTAGGATCTAAAACCCTTGA+TGG | 0.345596 | 4.3:-23880644 | None:intergenic |
| TACAGGATTGGGGTGTCTAA+TGG | 0.352012 | 4.3:-23877583 | None:intergenic |
| AAAGAAATGCTTGTAGATTC+TGG | 0.352389 | 4.3:+23877693 | MS.gene33772:CDS |
| TCAATATACTCTTGTCCTCT+TGG | 0.366138 | 4.3:-23874761 | None:intergenic |
| GAATCTACAAGCATTTCTTT+AGG | 0.369862 | 4.3:-23877690 | None:intergenic |
| TAGAATGGAAGCGCGATATA+AGG | 0.371179 | 4.3:+23879286 | MS.gene33772:CDS |
| TGAGGATTCTATTAAACATT+TGG | 0.371520 | 4.3:+23879313 | MS.gene33772:CDS |
| TTACCTCCTTTGGCAATCTC+TGG | 0.375894 | 4.3:-23877812 | None:intergenic |
| AACATAGTCATTACCTCCTT+TGG | 0.376563 | 4.3:-23877822 | None:intergenic |
| GTGGGTAATGTTAGTTCTCT+TGG | 0.381089 | 4.3:+23880569 | MS.gene33772:CDS |
| GCGGAAACTTGTACAGGATT+GGG | 0.383466 | 4.3:-23877594 | None:intergenic |
| GTTGTTAAATCTCAGATGTT+TGG | 0.383490 | 4.3:+23874593 | MS.gene33772:CDS |
| TTGTTAAATCTCAGATGTTT+GGG | 0.385878 | 4.3:+23874594 | MS.gene33772:CDS |
| TGCAACATGGACAAGATGTT+AGG | 0.391794 | 4.3:+23877532 | MS.gene33772:CDS |
| TCAGCTTGAGGAGCATAGTA+TGG | 0.395892 | 4.3:-23876245 | None:intergenic |
| TTGGATGGCATGAGCCATCT+TGG | 0.400381 | 4.3:-23876139 | None:intergenic |
| TCTTTAGGTAGTACCCTGTT+TGG | 0.400428 | 4.3:-23877675 | None:intergenic |
| GGTGGAATATACATCATCTT+TGG | 0.404500 | 4.3:+23878740 | MS.gene33772:intron |
| TTTGGGTATAGTGTTTGATC+TGG | 0.411621 | 4.3:+23874611 | MS.gene33772:CDS |
| AATGAGACTGCCTCCTCTTT+AGG | 0.413517 | 4.3:-23880605 | None:intergenic |
| ATCTTTAATATCATCTTCAT+AGG | 0.414639 | 4.3:-23876832 | None:intergenic |
| TTGGTTCACAACCACCAAAC+AGG | 0.415555 | 4.3:+23877661 | MS.gene33772:CDS |
| AGTCTCTGCCCTCAAAGAAT+TGG | 0.417437 | 4.3:+23880694 | MS.gene33772:CDS |
| CAGTGCATGATGGAGGGTCT+TGG | 0.420440 | 4.3:+23880825 | MS.gene33772:intron |
| ACAGCTGTTATGCCGATGTA+TGG | 0.422975 | 4.3:+23874471 | MS.gene33772:CDS |
| GTATGGGGAAGAATTACATT+TGG | 0.426229 | 4.3:+23874488 | MS.gene33772:CDS |
| AGGGATCTTGACTCTGAATC+TGG | 0.428657 | 4.3:+23878532 | MS.gene33772:CDS |
| CGTTCTTCAGGCTGCTGAGA+AGG | 0.433259 | 4.3:+23881631 | MS.gene33772:intron |
| ACTAGATAATTGCTCACGTC+AGG | 0.435489 | 4.3:-23876867 | None:intergenic |
| TTGGAAGTTAAGAGATCAAC+GGG | 0.440722 | 4.3:+23880668 | MS.gene33772:CDS |
| TGACGACAGACCATGTTTCT+GGG | 0.441838 | 4.3:+23874530 | MS.gene33772:CDS |
| ACAGGATTGGGGTGTCTAAT+GGG | 0.441847 | 4.3:-23877582 | None:intergenic |
| TTGTTCAATGTCTTCCAAGA+TGG | 0.444512 | 4.3:+23876125 | MS.gene33772:CDS |
| AGCCTCGTCCCATGTTAATC+CGG | 0.448078 | 4.3:-23881490 | None:intergenic |
| CCAGATAACGAATGATAACT+AGG | 0.453366 | 4.3:-23877970 | None:intergenic |
| TGAATCTCACCAATTCTTTG+AGG | 0.454278 | 4.3:-23880703 | None:intergenic |
| AGCGGAAACTTGTACAGGAT+TGG | 0.454708 | 4.3:-23877595 | None:intergenic |
| TATGCAAGCTTGATTCTAAA+GGG | 0.454773 | 4.3:-23877434 | None:intergenic |
| TTGGGGTGTCTAATGGGAAA+TGG | 0.457675 | 4.3:-23877576 | None:intergenic |
| CAGCTGCATCAGATCCATCA+AGG | 0.458170 | 4.3:+23880630 | MS.gene33772:CDS |
| TGCACTGAAGTGTGGAACTA+AGG | 0.458500 | 4.3:+23878603 | MS.gene33772:CDS |
| CGTATCAGCGGTCGAACTAT+GGG | 0.458962 | 4.3:-23874876 | None:intergenic |
| TGTTTGCACAATGGCTGAAA+GGG | 0.461207 | 4.3:+23875417 | MS.gene33772:CDS |
| GCAGGTGATGACATCCCCTT+TGG | 0.462943 | 4.3:+23878490 | MS.gene33772:intron |
| TTATTCGAGAATCCCTGAAA+TGG | 0.464504 | 4.3:-23882040 | None:intergenic |
| GGAGAACTGCAGCTCTCTGC+TGG | 0.465113 | 4.3:-23878766 | None:intergenic |
| TGAACTGAATTTGTTAACAT+TGG | 0.465766 | 4.3:-23880873 | None:intergenic |
| CTGAAGAGAAGAAGTGAGCC+TGG | 0.465866 | 4.3:-23877292 | None:intergenic |
| ATTTGGTTGCAATGCATTCA+CGG | 0.466042 | 4.3:+23874505 | MS.gene33772:CDS |
| TTAGGTTGAGATAGATGGCC+AGG | 0.466392 | 4.3:+23881452 | MS.gene33772:intron |
| AAAGGGGCAACTTGAACCAT+TGG | 0.466466 | 4.3:-23877417 | None:intergenic |
| TTAGGTAGTACCCTGTTTGG+TGG | 0.466553 | 4.3:-23877672 | None:intergenic |
| TCTAACTTAGCAGTTGTCAT+AGG | 0.466599 | 4.3:-23877267 | None:intergenic |
| ATTGGCTTTACTGGTGTAGC+AGG | 0.468409 | 4.3:-23877399 | None:intergenic |
| TGCAAATGACAACGGTTATG+TGG | 0.469305 | 4.3:+23880550 | MS.gene33772:CDS |
| AAATGTTGCTTGCAATGTTA+GGG | 0.469579 | 4.3:+23876422 | MS.gene33772:CDS |
| AGTTCTCCTGCTAGAGAAGA+AGG | 0.472341 | 4.3:+23877456 | MS.gene33772:CDS |
| TGGGGATTTATTGTTGCCAC+AGG | 0.473114 | 4.3:+23874549 | MS.gene33772:CDS |
| AAATACAATGCGCTCATTCG+AGG | 0.473176 | 4.3:+23874653 | MS.gene33772:CDS |
| GCTTGCGCCCTCTTGCAATC+AGG | 0.474574 | 4.3:-23875381 | None:intergenic |
| GCAATCTCTGGTGGCTCTCG+TGG | 0.475076 | 4.3:-23877800 | None:intergenic |
| GTAGGTCATCTTCTAGCCAC+AGG | 0.476095 | 4.3:+23878512 | MS.gene33772:CDS |
| CATCTTCTGGTAGATATCCT+AGG | 0.476477 | 4.3:+23882104 | MS.gene33772:CDS |
| CAGCTGTTATGCCGATGTAT+GGG | 0.479732 | 4.3:+23874472 | MS.gene33772:CDS |
| TTTCTTGCAACGCATAAGAC+AGG | 0.481504 | 4.3:-23876402 | None:intergenic |
| GACCTGCATGGGAAGATCTT+CGG | 0.482586 | 4.3:+23875353 | MS.gene33772:CDS |
| GATGAGCCTGGTTCTGCATA+TGG | 0.484490 | 4.3:+23880506 | MS.gene33772:CDS |
| GCAACATGGACAAGATGTTA+GGG | 0.485460 | 4.3:+23877533 | MS.gene33772:CDS |
| AAAAGGATGGTTGGTGAGGC+CGG | 0.486081 | 4.3:-23877737 | None:intergenic |
| CTATGCAAGCTTGATTCTAA+AGG | 0.488703 | 4.3:-23877435 | None:intergenic |
| GAATCTCACCAATTCTTTGA+GGG | 0.489832 | 4.3:-23880702 | None:intergenic |
| AGACTGCCTCCTCTTTAGGC+AGG | 0.490073 | 4.3:-23880601 | None:intergenic |
| GCGAATCGCTGCAGAGTTCG+TGG | 0.490243 | 4.3:-23882082 | None:intergenic |
| GGGATTTGGCAGAACTAGAA+TGG | 0.490515 | 4.3:+23879271 | MS.gene33772:CDS |
| GCAGTATGCTGAAAATGATC+AGG | 0.490876 | 4.3:+23874785 | MS.gene33772:CDS |
| TTCTAGTTCTGCCAAATCCC+TGG | 0.491193 | 4.3:-23879268 | None:intergenic |
| TCATCTTCATAGGCAATTTG+AGG | 0.492346 | 4.3:-23876822 | None:intergenic |
| GACGATGGATCTGCTTCCTA+TGG | 0.493208 | 4.3:+23877055 | MS.gene33772:CDS |
| TTACTGGTGTAGCAGGTTGA+AGG | 0.495857 | 4.3:-23877392 | None:intergenic |
| GCAAGTGTAAGAGCTGATTC+TGG | 0.496248 | 4.3:-23873664 | None:intergenic |
| GATGGCCAGGTCTATGGTAA+AGG | 0.497354 | 4.3:+23881465 | MS.gene33772:CDS |
| ATGGCCAGGTCTATGGTAAA+GGG | 0.497401 | 4.3:+23881466 | MS.gene33772:CDS |
| GATTCTATTAAACATTTGGC+AGG | 0.498397 | 4.3:+23879317 | MS.gene33772:CDS |
| TGAACCAATCTCCTCTTCTA+CGG | 0.498570 | 4.3:-23877646 | None:intergenic |
| AATGATAACTAGGGAGCATA+TGG | 0.499503 | 4.3:-23877960 | None:intergenic |
| GGGATTGCTGGAGCATTCCT+AGG | 0.502433 | 4.3:-23882121 | None:intergenic |
| CAGGCTGCTGAGAAGGCACT+TGG | 0.503322 | 4.3:+23881638 | MS.gene33772:intron |
| CCATAGTTCGACCGCTGATA+CGG | 0.506028 | 4.3:+23874877 | MS.gene33772:CDS |
| TCCGCTCGTGCACCATCCCG+TGG | 0.507027 | 4.3:+23877612 | MS.gene33772:CDS |
| ATTTCCTGTAATACTGCAAC+TGG | 0.507958 | 4.3:-23878580 | None:intergenic |
| TGAGGTAGAAAGAAAATTGA+AGG | 0.509056 | 4.3:+23877117 | MS.gene33772:CDS |
| GAATTTGTTAACATTGGAGC+AGG | 0.509399 | 4.3:-23880867 | None:intergenic |
| CAGAATTAGACCCAGATACA+AGG | 0.509572 | 4.3:+23877493 | MS.gene33772:CDS |
| ACTTCCCCTTCTTCTCTAGC+AGG | 0.511969 | 4.3:-23877462 | None:intergenic |
| CGCATTGTATGCGTTAAGTC+CGG | 0.512609 | 4.3:+23875511 | MS.gene33772:CDS |
| ATCATAGATGCGTGTGGTGG+AGG | 0.512729 | 4.3:-23877348 | None:intergenic |
| GACTGCCTCCTCTTTAGGCA+GGG | 0.513560 | 4.3:-23880600 | None:intergenic |
| CCTCCTTTGGCAATCTCTGG+TGG | 0.515237 | 4.3:-23877809 | None:intergenic |
| GCTAGAGAAGAAGGGGAAGT+AGG | 0.515832 | 4.3:+23877465 | MS.gene33772:CDS |
| TTTCCCGTAGAAGAGGAGAT+TGG | 0.516758 | 4.3:+23877642 | MS.gene33772:CDS |
| GAAGCCTTCGCCTTGTATCT+GGG | 0.517685 | 4.3:-23877503 | None:intergenic |
| ATGTGAATCAGGCCATTTCA+GGG | 0.520172 | 4.3:+23882028 | MS.gene33772:intron |
| ACAACGAATTTCTGGCATGC+AGG | 0.520484 | 4.3:+23874722 | MS.gene33772:CDS |
| CTCCGAAGATCTTCCCATGC+AGG | 0.526395 | 4.3:-23875355 | None:intergenic |
| TAATTGCTCACGTCAGGGGC+AGG | 0.526581 | 4.3:-23876861 | None:intergenic |
| CAGGTCTATGGTAAAGGGAC+CGG | 0.526934 | 4.3:+23881471 | MS.gene33772:CDS |
| CAGTATACAATGGTATCTCC+TGG | 0.530309 | 4.3:+23877312 | MS.gene33772:CDS |
| GATGCGTGTGGTGGAGGTGG+TGG | 0.530481 | 4.3:-23877342 | None:intergenic |
| TCACGTGCTAAGGATGAGCC+TGG | 0.532562 | 4.3:+23880494 | MS.gene33772:CDS |
| TTTCTTCAGTGCATGATGGA+GGG | 0.533552 | 4.3:+23880819 | MS.gene33772:intron |
| GGAGGTGGTGGAACTGAACC+AGG | 0.533744 | 4.3:-23877330 | None:intergenic |
| TTGTTTGCACAATGGCTGAA+AGG | 0.536700 | 4.3:+23875416 | MS.gene33772:CDS |
| AATGATCAGGTAGTTGATAA+CGG | 0.538229 | 4.3:+23874798 | MS.gene33772:CDS |
| GCATAGTATGGAGCAAATGC+AGG | 0.538993 | 4.3:-23876233 | None:intergenic |
| CCGCTCGTGCACCATCCCGT+GGG | 0.541232 | 4.3:+23877613 | MS.gene33772:CDS |
| ACTGCCTCCTCTTTAGGCAG+GGG | 0.542578 | 4.3:-23880599 | None:intergenic |
| AGCAAATTTACCTCAGCTTG+AGG | 0.544349 | 4.3:-23876257 | None:intergenic |
| TTGACGATCGCTTGAAAGTG+TGG | 0.546180 | 4.3:+23876177 | MS.gene33772:CDS |
| TTCTCCTGCTAGAGAAGAAG+GGG | 0.546543 | 4.3:+23877458 | MS.gene33772:CDS |
| CATATATTTATCACGTGCTA+AGG | 0.549424 | 4.3:+23880484 | MS.gene33772:CDS |
| CATTGTATTTGCTACGACAA+GGG | 0.550005 | 4.3:-23874640 | None:intergenic |
| GAACCAATCTCCTCTTCTAC+GGG | 0.551619 | 4.3:-23877645 | None:intergenic |
| TGGCTCATGCCATCCAAAGA+TGG | 0.556645 | 4.3:+23876145 | MS.gene33772:CDS |
| TTACTAACGCCATCTTTGGA+TGG | 0.556894 | 4.3:-23876154 | None:intergenic |
| CTAGAAGATGACCTACCAAA+GGG | 0.558062 | 4.3:-23878505 | None:intergenic |
| GATCTCTTAACTTCCAACCT+AGG | 0.559127 | 4.3:-23880662 | None:intergenic |
| GGGACTATGCGCTAGAAATG+TGG | 0.566303 | 4.3:+23875437 | MS.gene33772:CDS |
| AGATTCTGGTCCATCACGTA+TGG | 0.567393 | 4.3:+23877707 | MS.gene33772:CDS |
| CTTGTGTATCAGAGAGAACA+AGG | 0.570390 | 4.3:+23873691 | MS.gene33772:CDS |
| TTTGACACGCATCAATCCGC+AGG | 0.570857 | 4.3:+23874920 | MS.gene33772:CDS |
| AAACGGATCTCTATTTCCAT+AGG | 0.572538 | 4.3:-23877071 | None:intergenic |
| AGATAATGCTGGAACAAGCT+CGG | 0.575803 | 4.3:-23874841 | None:intergenic |
| GCAAATGACAACGGTTATGT+GGG | 0.575899 | 4.3:+23880551 | MS.gene33772:CDS |
| CCCACGGGATGGTGCACGAG+CGG | 0.575953 | 4.3:-23877613 | None:intergenic |
| CGGTCCCTTTACCATAGACC+TGG | 0.577777 | 4.3:-23881470 | None:intergenic |
| TGATGACTGTCAGATAATGC+TGG | 0.578075 | 4.3:-23874852 | None:intergenic |
| GTTCTCCTGCTAGAGAAGAA+GGG | 0.582396 | 4.3:+23877457 | MS.gene33772:CDS |
| ATAGATGCGTGTGGTGGAGG+TGG | 0.585050 | 4.3:-23877345 | None:intergenic |
| ATGGGACGAGGCTAAAATGC+AGG | 0.586932 | 4.3:+23881500 | MS.gene33772:CDS |
| CTGCCTCCTCTTTAGGCAGG+GGG | 0.587416 | 4.3:-23880598 | None:intergenic |
| ACAATAAATCCCCAGAAACA+TGG | 0.587554 | 4.3:-23874540 | None:intergenic |
| CTAGATAATTGCTCACGTCA+GGG | 0.588151 | 4.3:-23876866 | None:intergenic |
| CGCTCGTGCACCATCCCGTG+GGG | 0.589699 | 4.3:+23877614 | MS.gene33772:CDS |
| GCACGAGCGGAAACTTGTAC+AGG | 0.590581 | 4.3:-23877600 | None:intergenic |
| TTCTTCTCTTCAGTATACAA+TGG | 0.591221 | 4.3:+23877302 | MS.gene33772:CDS |
| GAAAGATGAAGTATACGCAC+AGG | 0.591633 | 4.3:+23880896 | MS.gene33772:CDS |
| GTTGGAAGTTAAGAGATCAA+CGG | 0.591847 | 4.3:+23880667 | MS.gene33772:CDS |
| GAGCAATTATCTAGTTTCAG+AGG | 0.592959 | 4.3:+23876875 | MS.gene33772:CDS |
| CAGATAACGAATGATAACTA+GGG | 0.593484 | 4.3:-23877969 | None:intergenic |
| TAGATAATTGCTCACGTCAG+GGG | 0.595191 | 4.3:-23876865 | None:intergenic |
| AGCTGCATCAGATCCATCAA+GGG | 0.595432 | 4.3:+23880631 | MS.gene33772:CDS |
| CGGAGCTACCTGATTGCAAG+AGG | 0.598380 | 4.3:+23875373 | MS.gene33772:CDS |
| CGGTGCTTCTCCATACGTGA+TGG | 0.599393 | 4.3:-23877717 | None:intergenic |
| TCTGCATATGGTGATGTGAG+TGG | 0.601289 | 4.3:+23880518 | MS.gene33772:CDS |
| CGGAAACTTGTACAGGATTG+GGG | 0.602565 | 4.3:-23877593 | None:intergenic |
| CAGGAAATTGCACTGAAGTG+TGG | 0.604310 | 4.3:+23878595 | MS.gene33772:CDS |
| GTAAAGGGACCGGATTAACA+TGG | 0.605523 | 4.3:+23881481 | MS.gene33772:CDS |
| CTTGTTCTCTCTGATACACA+AGG | 0.606958 | 4.3:-23873690 | None:intergenic |
| TGAAGAGAAGAAGTGAGCCT+GGG | 0.609026 | 4.3:-23877291 | None:intergenic |
| GCGATACAAGTGTTCTTGTG+AGG | 0.609671 | 4.3:+23875326 | MS.gene33772:CDS |
| GACGACAGACCATGTTTCTG+GGG | 0.612175 | 4.3:+23874531 | MS.gene33772:CDS |
| GTGATGACATCCCCTTTGGT+AGG | 0.612760 | 4.3:+23878494 | MS.gene33772:CDS |
| TTGCTCACGTCAGGGGCAGG+AGG | 0.612851 | 4.3:-23876858 | None:intergenic |
| GGATGAGAAAGATCAACCTC+GGG | 0.613520 | 4.3:+23876199 | MS.gene33772:CDS |
| TTCTTGCAACGCATAAGACA+GGG | 0.614336 | 4.3:-23876401 | None:intergenic |
| GCATTGTATTTGCTACGACA+AGG | 0.614622 | 4.3:-23874641 | None:intergenic |
| TGTGAGGTTGAGACCTGCAT+GGG | 0.616136 | 4.3:+23875342 | MS.gene33772:CDS |
| ACGAATTTCTGGCATGCAGG+CGG | 0.618925 | 4.3:+23874725 | MS.gene33772:CDS |
| AGCTGTTATGCCGATGTATG+GGG | 0.618991 | 4.3:+23874473 | MS.gene33772:CDS |
| CAACTGCTAAGTTAGATCCC+AGG | 0.623962 | 4.3:+23877274 | MS.gene33772:CDS |
| GGGATGGTTTCCCGTAGAAG+AGG | 0.626965 | 4.3:+23877635 | MS.gene33772:CDS |
| CCACCAGAGATTGCCAAAGG+AGG | 0.628128 | 4.3:+23877809 | MS.gene33772:CDS |
| GGTTGAAGGAACTGTGCGTG+AGG | 0.629555 | 4.3:-23877378 | None:intergenic |
| ACATCACCATATGCAGAACC+AGG | 0.630395 | 4.3:-23880512 | None:intergenic |
| TGGTTCACAACCACCAAACA+GGG | 0.630610 | 4.3:+23877662 | MS.gene33772:CDS |
| TTTCCTAATGCAAATGACAA+CGG | 0.637618 | 4.3:+23880542 | MS.gene33772:CDS |
| GCTAGAAGATGACCTACCAA+AGG | 0.638457 | 4.3:-23878506 | None:intergenic |
| TGATGGCATGGCAGATGCTG+AGG | 0.638496 | 4.3:+23877099 | MS.gene33772:CDS |
| GTTTGACTTCTACAGGACGA+TGG | 0.638977 | 4.3:+23877040 | MS.gene33772:intron |
| CATCACGTATGGAGAAGCAC+CGG | 0.639675 | 4.3:+23877718 | MS.gene33772:CDS |
| GGGATGAGAAAGATCAACCT+CGG | 0.640588 | 4.3:+23876198 | MS.gene33772:CDS |
| ATGCAAGCTTGATTCTAAAG+GGG | 0.641469 | 4.3:-23877433 | None:intergenic |
| TGTAATTCTTCCCCATACAT+CGG | 0.643719 | 4.3:-23874483 | None:intergenic |
| GACCGGATTAACATGGGACG+AGG | 0.645213 | 4.3:+23881488 | MS.gene33772:CDS |
| GTTGCTTGCAATGTTAGGGG+TGG | 0.645636 | 4.3:+23876426 | MS.gene33772:CDS |
| AGCGCGATATAAGGCTGCTG+AGG | 0.646369 | 4.3:+23879295 | MS.gene33772:CDS |
| TAGGTCATCTTCTAGCCACA+GGG | 0.647886 | 4.3:+23878513 | MS.gene33772:CDS |
| TGCATGCCAGAAATTCGTTG+TGG | 0.649838 | 4.3:-23874720 | None:intergenic |
| GGAAGTCTAAGAACAATGCA+TGG | 0.650176 | 4.3:+23881659 | MS.gene33772:CDS |
| GAGCCACCAGAGATTGCCAA+AGG | 0.656225 | 4.3:+23877806 | MS.gene33772:CDS |
| ATACTATGCTCCTCAAGCTG+AGG | 0.657687 | 4.3:+23876247 | MS.gene33772:CDS |
| TGCTACACCAGTAAAGCCAA+TGG | 0.658626 | 4.3:+23877401 | MS.gene33772:CDS |
| TAGACCCAGATACAAGGCGA+AGG | 0.659790 | 4.3:+23877499 | MS.gene33772:CDS |
| GGAGCTACCTGATTGCAAGA+GGG | 0.659861 | 4.3:+23875374 | MS.gene33772:CDS |
| AGAGACGGCAGAGTTCTCCC+AGG | 0.665045 | 4.3:+23881693 | MS.gene33772:CDS |
| TGACGATCGCTTGAAAGTGT+GGG | 0.665059 | 4.3:+23876178 | MS.gene33772:CDS |
| TTGTGAGGTTGAGACCTGCA+TGG | 0.665083 | 4.3:+23875341 | MS.gene33772:CDS |
| GGGTGTCTAATGGGAAATGG+AGG | 0.665273 | 4.3:-23877573 | None:intergenic |
| ATGGCCACAGCATTCAGAGA+CGG | 0.672222 | 4.3:+23881678 | MS.gene33772:CDS |
| GCAGGAACGACGTGTACCCG+AGG | 0.674336 | 4.3:-23876215 | None:intergenic |
| TAGAATGAAGGATACCTCGA+TGG | 0.674889 | 4.3:-23878787 | None:intergenic |
| AGACGAATTATAAAGTCCTG+TGG | 0.679453 | 4.3:-23874565 | None:intergenic |
| TCTGCCGTCTCTGAATGCTG+TGG | 0.679661 | 4.3:-23881682 | None:intergenic |
| GGAGATCAAGCGCTACCAAG+AGG | 0.682061 | 4.3:+23874746 | MS.gene33772:CDS |
| AGGCTTCTCATATTGCAACA+TGG | 0.682388 | 4.3:+23877519 | MS.gene33772:CDS |
| AATGTTGCTTGCAATGTTAG+GGG | 0.688191 | 4.3:+23876423 | MS.gene33772:CDS |
| TAAAGGGACCGGATTAACAT+GGG | 0.691890 | 4.3:+23881482 | MS.gene33772:CDS |
| GCTCGTGCACCATCCCGTGG+GGG | 0.693202 | 4.3:+23877615 | MS.gene33772:CDS |
| TGTATCATAGATGCGTGTGG+TGG | 0.697988 | 4.3:-23877351 | None:intergenic |
| CCAGAGAAAAGTAAACTCTG+AGG | 0.714229 | 4.3:+23874692 | MS.gene33772:CDS |
| TAGAAGATGACCTACCAAAG+GGG | 0.717447 | 4.3:-23878504 | None:intergenic |
| AGAGCTGCAGTTCTCCATCG+AGG | 0.747831 | 4.3:+23878773 | MS.gene33772:CDS |
| AATTGTATCATAGATGCGTG+TGG | 0.754034 | 4.3:-23877354 | None:intergenic |
| ATTCAGAGTCAAGATCCCTG+TGG | 0.788306 | 4.3:-23878528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23873644 | 23882147 | 23873644 | ID=MS.gene33772 |
| chr4.3 | mRNA | 23873644 | 23882147 | 23873644 | ID=MS.gene33772.t1;Parent=MS.gene33772 |
| chr4.3 | exon | 23873644 | 23873712 | 23873644 | ID=MS.gene33772.t1.exon1;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23873644 | 23873712 | 23873644 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23874471 | 23874941 | 23874471 | ID=MS.gene33772.t1.exon2;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23874471 | 23874941 | 23874471 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23875322 | 23875532 | 23875322 | ID=MS.gene33772.t1.exon3;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23875322 | 23875532 | 23875322 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23876111 | 23876268 | 23876111 | ID=MS.gene33772.t1.exon4;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23876111 | 23876268 | 23876111 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23876387 | 23876457 | 23876387 | ID=MS.gene33772.t1.exon5;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23876387 | 23876457 | 23876387 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23876791 | 23876896 | 23876791 | ID=MS.gene33772.t1.exon6;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23876791 | 23876896 | 23876791 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23877055 | 23877138 | 23877055 | ID=MS.gene33772.t1.exon7;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23877055 | 23877138 | 23877055 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23877240 | 23877830 | 23877240 | ID=MS.gene33772.t1.exon8;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23877240 | 23877830 | 23877240 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23877928 | 23877991 | 23877928 | ID=MS.gene33772.t1.exon9;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23877928 | 23877991 | 23877928 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23878494 | 23878624 | 23878494 | ID=MS.gene33772.t1.exon10;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23878494 | 23878624 | 23878494 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23878741 | 23878794 | 23878741 | ID=MS.gene33772.t1.exon11;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23878741 | 23878794 | 23878741 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23879242 | 23879338 | 23879242 | ID=MS.gene33772.t1.exon12;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23879242 | 23879338 | 23879242 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23880483 | 23880715 | 23880483 | ID=MS.gene33772.t1.exon13;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23880483 | 23880715 | 23880483 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23880828 | 23880917 | 23880828 | ID=MS.gene33772.t1.exon14;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23880828 | 23880917 | 23880828 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23881456 | 23881521 | 23881456 | ID=MS.gene33772.t1.exon15;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23881456 | 23881521 | 23881456 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23881641 | 23881714 | 23881641 | ID=MS.gene33772.t1.exon16;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23881641 | 23881714 | 23881641 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| chr4.3 | exon | 23882039 | 23882147 | 23882039 | ID=MS.gene33772.t1.exon17;Parent=MS.gene33772.t1 |
| chr4.3 | CDS | 23882039 | 23882147 | 23882039 | ID=cds.MS.gene33772.t1;Parent=MS.gene33772.t1 |
| Gene Sequence |
| Protein sequence |
