Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052498.t1 | XP_013457069.1 | 94.7 | 867 | 17 | 2 | 1 | 838 | 92 | 958 | 0.00E+00 | 1618.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052498.t1 | Q5YDB6 | 58.7 | 874 | 300 | 13 | 1 | 830 | 110 | 966 | 1.2e-272 | 940.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052498.t1 | A0A072UZ11 | 94.7 | 867 | 17 | 2 | 1 | 838 | 92 | 958 | 0.0e+00 | 1618.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050257 | MS.gene052498 | 0.819961 | 8.82E-53 | -1.69E-46 |
| MS.gene050258 | MS.gene052498 | 0.815199 | 1.04E-51 | -1.69E-46 |
| MS.gene052498 | MS.gene064425 | 0.822505 | 2.29E-53 | -1.69E-46 |
| MS.gene052498 | MS.gene064854 | 0.804738 | 1.87E-49 | -1.69E-46 |
| MS.gene052498 | MS.gene070003 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene052498 | MS.gene20117 | 0.81119 | 7.92E-51 | -1.69E-46 |
| MS.gene052498 | MS.gene26030 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene052498 | MS.gene33772 | 0.952986 | 7.39E-111 | -1.69E-46 |
| MS.gene052498 | MS.gene45789 | 0.804531 | 2.07E-49 | -1.69E-46 |
| MS.gene052498 | MS.gene48756 | 0.803313 | 3.70E-49 | -1.69E-46 |
| MS.gene052498 | MS.gene52740 | 0.801336 | 9.45E-49 | -1.69E-46 |
| MS.gene052498 | MS.gene59435 | 0.815265 | 1.01E-51 | -1.69E-46 |
| MS.gene052498 | MS.gene76702 | 0.804193 | 2.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052498.t1 | MTR_4g089010 | 94.694 | 867 | 17 | 2 | 1 | 838 | 92 | 958 | 0.0 | 1684 |
| MS.gene052498.t1 | MTR_7g067540 | 45.192 | 728 | 338 | 14 | 6 | 732 | 100 | 767 | 0.0 | 583 |
| MS.gene052498.t1 | MTR_4g089000 | 64.000 | 100 | 31 | 2 | 5 | 101 | 11 | 108 | 1.34e-33 | 127 |
| MS.gene052498.t1 | MTR_4g089000 | 46.087 | 115 | 29 | 2 | 757 | 838 | 48 | 162 | 3.08e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052498.t1 | AT4G21670 | 59.336 | 873 | 296 | 14 | 1 | 830 | 110 | 966 | 0.0 | 979 |
| MS.gene052498.t1 | AT5G01270 | 46.288 | 687 | 298 | 16 | 6 | 681 | 100 | 726 | 0.0 | 552 |
| MS.gene052498.t1 | AT5G01270 | 46.288 | 687 | 298 | 16 | 6 | 681 | 100 | 726 | 0.0 | 552 |
Find 219 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGAACCATTGGCTTTAC+TGG | 0.208461 | 4.3:-23845279 | None:intergenic |
| GTAGATCCACAACGAATTTC+TGG | 0.232662 | 4.3:+23842585 | MS.gene052498:CDS |
| AGAAGCCTTCGCCTTGTATC+TGG | 0.233500 | 4.3:-23845375 | None:intergenic |
| CCTAGTTATCATTCGTTATC+TGG | 0.234840 | 4.3:+23845841 | MS.gene052498:CDS |
| CCGTATCAGCGGTCGAACTA+TGG | 0.244363 | 4.3:-23842748 | None:intergenic |
| GAAATGTTGCTTGCAATGTT+AGG | 0.247371 | 4.3:+23844292 | MS.gene052498:CDS |
| GCCATCAACCTTAGAGAAAA+AGG | 0.251095 | 4.3:-23845625 | None:intergenic |
| TTCTCTTGTCAAGGGATTGC+TGG | 0.258532 | 4.3:-23850032 | None:intergenic |
| ATGACGACAGACCATGTTTC+TGG | 0.264090 | 4.3:+23842400 | MS.gene052498:CDS |
| TCAATTACTAACGCCATCTT+TGG | 0.279396 | 4.3:-23844029 | None:intergenic |
| ATAAATTCAAAAGAACTATT+AGG | 0.319906 | 4.3:+23843358 | MS.gene052498:CDS |
| GAATTTATCAAATTTGAATC+TGG | 0.323700 | 4.3:-23843343 | None:intergenic |
| CTGCAGCGATTCGCATCTTC+TGG | 0.334001 | 4.3:+23849990 | MS.gene052498:CDS |
| AACACCAGTTGCAGTATTAC+AGG | 0.334968 | 4.3:+23846447 | MS.gene052498:CDS |
| CTCTTGAGCGATCATCTCTA+TGG | 0.336726 | 4.3:-23845804 | None:intergenic |
| TAACCGTTGTCATTTGCATT+AGG | 0.342914 | 4.3:-23848444 | None:intergenic |
| GAGATAGATGGCCAGGTCTA+TGG | 0.343135 | 4.3:+23849358 | MS.gene052498:CDS |
| CTAGGATCTAAAACCCTTGA+TGG | 0.345596 | 4.3:-23848543 | None:intergenic |
| TACAGGATTGGGGTGTCTAA+TGG | 0.352012 | 4.3:-23845454 | None:intergenic |
| AAAGAAATGCTTGTAGATTC+TGG | 0.352389 | 4.3:+23845564 | MS.gene052498:CDS |
| TCAATATACTCTTGTCCTCT+TGG | 0.366138 | 4.3:-23842632 | None:intergenic |
| GAATCTACAAGCATTTCTTT+AGG | 0.369862 | 4.3:-23845561 | None:intergenic |
| TAGAATGGAAGCGCGATATA+AGG | 0.371179 | 4.3:+23847171 | MS.gene052498:CDS |
| TGAGGATTCTATTAAACATT+TGG | 0.371520 | 4.3:+23847198 | MS.gene052498:CDS |
| TTACCTCCTTTGGCAATCTC+TGG | 0.375894 | 4.3:-23845683 | None:intergenic |
| AACATAGTCATTACCTCCTT+TGG | 0.376563 | 4.3:-23845693 | None:intergenic |
| GTGGGTAATGTTAGTTCTCT+TGG | 0.381089 | 4.3:+23848468 | MS.gene052498:CDS |
| GCGGAAACTTGTACAGGATT+GGG | 0.383466 | 4.3:-23845465 | None:intergenic |
| GTTGTTAAATCTCAGATGTT+TGG | 0.383490 | 4.3:+23842464 | MS.gene052498:CDS |
| TTGTTAAATCTCAGATGTTT+GGG | 0.385878 | 4.3:+23842465 | MS.gene052498:CDS |
| TGCAACATGGACAAGATGTT+AGG | 0.391794 | 4.3:+23845403 | MS.gene052498:CDS |
| TCAGCTTGAGGAGCATAGTA+TGG | 0.395892 | 4.3:-23844116 | None:intergenic |
| TTGGATGGCATGAGCCATCT+TGG | 0.400381 | 4.3:-23844010 | None:intergenic |
| TCTTTAGGTAGTACCCTGTT+TGG | 0.400428 | 4.3:-23845546 | None:intergenic |
| GGTGGAATATACATCATCTT+TGG | 0.404500 | 4.3:+23846625 | MS.gene052498:intron |
| TTTGGGTATAGTGTTTGATC+TGG | 0.411621 | 4.3:+23842482 | MS.gene052498:CDS |
| AATGAGACTGCCTCCTCTTT+AGG | 0.413517 | 4.3:-23848504 | None:intergenic |
| ATCTTTAATATCATCTTCAT+AGG | 0.414639 | 4.3:-23844703 | None:intergenic |
| TTGGTTCACAACCACCAAAC+AGG | 0.415555 | 4.3:+23845532 | MS.gene052498:CDS |
| AGTCTCTGCCCTCAAAGAAT+TGG | 0.417437 | 4.3:+23848593 | MS.gene052498:CDS |
| CAGTGCATGATGGAGGGTCT+TGG | 0.420440 | 4.3:+23848724 | MS.gene052498:intron |
| ACAGCTGTTATGCCGATGTA+TGG | 0.422975 | 4.3:+23842342 | None:intergenic |
| GTATGGGGAAGAATTACATT+TGG | 0.426229 | 4.3:+23842359 | MS.gene052498:CDS |
| AGGGATCTTGACTCTGAATC+TGG | 0.428657 | 4.3:+23846403 | MS.gene052498:CDS |
| ACTAGATAATTGCTCACGTC+AGG | 0.435489 | 4.3:-23844738 | None:intergenic |
| TTGGAAGTTAAGAGATCAAC+GGG | 0.440722 | 4.3:+23848567 | MS.gene052498:CDS |
| TGACGACAGACCATGTTTCT+GGG | 0.441838 | 4.3:+23842401 | MS.gene052498:CDS |
| ACAGGATTGGGGTGTCTAAT+GGG | 0.441847 | 4.3:-23845453 | None:intergenic |
| TTGTTCAATGTCTTCCAAGA+TGG | 0.444512 | 4.3:+23843996 | MS.gene052498:CDS |
| AGCCTCGTCCCATGTTAATC+CGG | 0.448078 | 4.3:-23849389 | None:intergenic |
| CCAGATAACGAATGATAACT+AGG | 0.453366 | 4.3:-23845841 | None:intergenic |
| TGAATCTCACCAATTCTTTG+AGG | 0.454278 | 4.3:-23848602 | None:intergenic |
| AGCGGAAACTTGTACAGGAT+TGG | 0.454708 | 4.3:-23845466 | None:intergenic |
| TATGCAAGCTTGATTCTAAA+GGG | 0.454773 | 4.3:-23845305 | None:intergenic |
| TTGGGGTGTCTAATGGGAAA+TGG | 0.457675 | 4.3:-23845447 | None:intergenic |
| CAGCTGCATCAGATCCATCA+AGG | 0.458170 | 4.3:+23848529 | MS.gene052498:CDS |
| TGCACTGAAGTGTGGAACTA+AGG | 0.458500 | 4.3:+23846474 | MS.gene052498:CDS |
| CGTATCAGCGGTCGAACTAT+GGG | 0.458962 | 4.3:-23842747 | None:intergenic |
| TGTTTGCACAATGGCTGAAA+GGG | 0.461207 | 4.3:+23843288 | MS.gene052498:CDS |
| GCAGGTGATGACATCCCCTT+TGG | 0.462943 | 4.3:+23846361 | MS.gene052498:intron |
| GGAGAACTGCAGCTCTCTGC+TGG | 0.465113 | 4.3:-23846651 | None:intergenic |
| TGAACTGAATTTGTTAACAT+TGG | 0.465766 | 4.3:-23848772 | None:intergenic |
| CTGAAGAGAAGAAGTGAGCC+TGG | 0.465866 | 4.3:-23845163 | None:intergenic |
| ATTTGGTTGCAATGCATTCA+CGG | 0.466042 | 4.3:+23842376 | MS.gene052498:CDS |
| TTAGGTTGAGATAGATGGCC+AGG | 0.466392 | 4.3:+23849351 | MS.gene052498:intron |
| AAAGGGGCAACTTGAACCAT+TGG | 0.466466 | 4.3:-23845288 | None:intergenic |
| TTAGGTAGTACCCTGTTTGG+TGG | 0.466553 | 4.3:-23845543 | None:intergenic |
| TCTAACTTAGCAGTTGTCAT+AGG | 0.466599 | 4.3:-23845138 | None:intergenic |
| ATTGGCTTTACTGGTGTAGC+AGG | 0.468409 | 4.3:-23845270 | None:intergenic |
| TGCAAATGACAACGGTTATG+TGG | 0.469305 | 4.3:+23848449 | MS.gene052498:CDS |
| AAATGTTGCTTGCAATGTTA+GGG | 0.469579 | 4.3:+23844293 | MS.gene052498:CDS |
| AGTTCTCCTGCTAGAGAAGA+AGG | 0.472341 | 4.3:+23845327 | MS.gene052498:CDS |
| TGGGGATTTATTGTTGCCAC+AGG | 0.473114 | 4.3:+23842420 | MS.gene052498:CDS |
| AAATACAATGCGCTCATTCG+AGG | 0.473176 | 4.3:+23842524 | MS.gene052498:CDS |
| GCTTGCGCCCTCTTGCAATC+AGG | 0.474574 | 4.3:-23843252 | None:intergenic |
| GCAATCTCTGGTGGCTCTCG+TGG | 0.475076 | 4.3:-23845671 | None:intergenic |
| GTAGGTCATCTTCTAGCCAC+AGG | 0.476095 | 4.3:+23846383 | MS.gene052498:CDS |
| CATCTTCTGGTAGATATCCT+AGG | 0.476477 | 4.3:+23850003 | MS.gene052498:CDS |
| CAGCTGTTATGCCGATGTAT+GGG | 0.479732 | 4.3:+23842343 | None:intergenic |
| TTTCTTGCAACGCATAAGAC+AGG | 0.481504 | 4.3:-23844273 | None:intergenic |
| GACCTGCATGGGAAGATCTT+CGG | 0.482586 | 4.3:+23843224 | MS.gene052498:CDS |
| GATGAGCCTGGTTCTGCATA+TGG | 0.484490 | 4.3:+23848405 | MS.gene052498:CDS |
| GCAACATGGACAAGATGTTA+GGG | 0.485460 | 4.3:+23845404 | MS.gene052498:CDS |
| TTTCCTGTAGAAGAGGAGAT+TGG | 0.485845 | 4.3:+23845513 | MS.gene052498:CDS |
| AAAAGGATGGTTGGTGAGGC+CGG | 0.486081 | 4.3:-23845608 | None:intergenic |
| CTATGCAAGCTTGATTCTAA+AGG | 0.488703 | 4.3:-23845306 | None:intergenic |
| GAATCTCACCAATTCTTTGA+GGG | 0.489832 | 4.3:-23848601 | None:intergenic |
| AGACTGCCTCCTCTTTAGGC+AGG | 0.490073 | 4.3:-23848500 | None:intergenic |
| GCGAATCGCTGCAGAGTTCG+TGG | 0.490243 | 4.3:-23849981 | None:intergenic |
| GGGATTTGGCAGAACTAGAA+TGG | 0.490515 | 4.3:+23847156 | MS.gene052498:CDS |
| GCAGTATGCTGAAAATGATC+AGG | 0.490876 | 4.3:+23842656 | MS.gene052498:CDS |
| TTCTAGTTCTGCCAAATCCC+TGG | 0.491193 | 4.3:-23847153 | None:intergenic |
| TCATCTTCATAGGCAATTTG+AGG | 0.492346 | 4.3:-23844693 | None:intergenic |
| GACGATGGATCTGCTTCCTA+TGG | 0.493208 | 4.3:+23844926 | MS.gene052498:CDS |
| TTACTGGTGTAGCAGGTTGA+AGG | 0.495857 | 4.3:-23845263 | None:intergenic |
| GATGGCCAGGTCTATGGTAA+AGG | 0.497354 | 4.3:+23849364 | MS.gene052498:CDS |
| GAACCAATCTCCTCTTCTAC+AGG | 0.497383 | 4.3:-23845516 | None:intergenic |
| ATGGCCAGGTCTATGGTAAA+GGG | 0.497401 | 4.3:+23849365 | MS.gene052498:CDS |
| GATTCTATTAAACATTTGGC+AGG | 0.498397 | 4.3:+23847202 | MS.gene052498:CDS |
| AATGATAACTAGGGAGCATA+TGG | 0.499503 | 4.3:-23845831 | None:intergenic |
| GGGATTGCTGGAGCATTCCT+AGG | 0.502433 | 4.3:-23850020 | None:intergenic |
| CCATAGTTCGACCGCTGATA+CGG | 0.506028 | 4.3:+23842748 | MS.gene052498:CDS |
| TCCGCTCGTGCACCATCCCG+TGG | 0.507027 | 4.3:+23845483 | MS.gene052498:CDS |
| ATTTCCTGTAATACTGCAAC+TGG | 0.507958 | 4.3:-23846451 | None:intergenic |
| TGAGGTAGAAAGAAAATTGA+AGG | 0.509056 | 4.3:+23844988 | MS.gene052498:CDS |
| GAATTTGTTAACATTGGAGC+AGG | 0.509399 | 4.3:-23848766 | None:intergenic |
| CAGAATTAGACCCAGATACA+AGG | 0.509572 | 4.3:+23845364 | MS.gene052498:CDS |
| ACTTCCCCTTCTTCTCTAGC+AGG | 0.511969 | 4.3:-23845333 | None:intergenic |
| CGCATTGTATGCGTTAAGTC+CGG | 0.512609 | 4.3:+23843382 | MS.gene052498:CDS |
| ATCATAGATGCGTGTGGTGG+AGG | 0.512729 | 4.3:-23845219 | None:intergenic |
| GACTGCCTCCTCTTTAGGCA+GGG | 0.513560 | 4.3:-23848499 | None:intergenic |
| CCTCCTTTGGCAATCTCTGG+TGG | 0.515237 | 4.3:-23845680 | None:intergenic |
| GCTAGAGAAGAAGGGGAAGT+AGG | 0.515832 | 4.3:+23845336 | MS.gene052498:CDS |
| GAAGCCTTCGCCTTGTATCT+GGG | 0.517685 | 4.3:-23845374 | None:intergenic |
| ACAACGAATTTCTGGCATGC+AGG | 0.520484 | 4.3:+23842593 | MS.gene052498:CDS |
| CTCCGAAGATCTTCCCATGC+AGG | 0.526395 | 4.3:-23843226 | None:intergenic |
| TAATTGCTCACGTCAGGGGC+AGG | 0.526581 | 4.3:-23844732 | None:intergenic |
| CAGGTCTATGGTAAAGGGAC+CGG | 0.526934 | 4.3:+23849370 | MS.gene052498:CDS |
| CAGTATACAATGGTATCTCC+TGG | 0.530309 | 4.3:+23845183 | MS.gene052498:CDS |
| GATGCGTGTGGTGGAGGTGG+TGG | 0.530481 | 4.3:-23845213 | None:intergenic |
| TCACGTGCTAAGGATGAGCC+TGG | 0.532562 | 4.3:+23848393 | MS.gene052498:CDS |
| TTTCTTCAGTGCATGATGGA+GGG | 0.533552 | 4.3:+23848718 | MS.gene052498:intron |
| GGAGGTGGTGGAACTGAACC+AGG | 0.533744 | 4.3:-23845201 | None:intergenic |
| TTGTTTGCACAATGGCTGAA+AGG | 0.536700 | 4.3:+23843287 | MS.gene052498:CDS |
| AATGATCAGGTAGTTGATAA+CGG | 0.538229 | 4.3:+23842669 | MS.gene052498:CDS |
| GCATAGTATGGAGCAAATGC+AGG | 0.538993 | 4.3:-23844104 | None:intergenic |
| CCGCTCGTGCACCATCCCGT+GGG | 0.541232 | 4.3:+23845484 | MS.gene052498:CDS |
| ACTGCCTCCTCTTTAGGCAG+GGG | 0.542578 | 4.3:-23848498 | None:intergenic |
| AGCAAATTTACCTCAGCTTG+AGG | 0.544349 | 4.3:-23844128 | None:intergenic |
| TTGACGATCGCTTGAAAGTG+TGG | 0.546180 | 4.3:+23844048 | MS.gene052498:CDS |
| TTCTCCTGCTAGAGAAGAAG+GGG | 0.546543 | 4.3:+23845329 | MS.gene052498:CDS |
| CATATATTTATCACGTGCTA+AGG | 0.549424 | 4.3:+23848383 | MS.gene052498:CDS |
| CATTGTATTTGCTACGACAA+GGG | 0.550005 | 4.3:-23842511 | None:intergenic |
| TGGCTCATGCCATCCAAAGA+TGG | 0.556645 | 4.3:+23844016 | MS.gene052498:CDS |
| TTACTAACGCCATCTTTGGA+TGG | 0.556894 | 4.3:-23844025 | None:intergenic |
| CTAGAAGATGACCTACCAAA+GGG | 0.558062 | 4.3:-23846376 | None:intergenic |
| GATCTCTTAACTTCCAACCT+AGG | 0.559127 | 4.3:-23848561 | None:intergenic |
| GGGACTATGCGCTAGAAATG+TGG | 0.566303 | 4.3:+23843308 | MS.gene052498:CDS |
| AGATTCTGGTCCATCACGTA+TGG | 0.567393 | 4.3:+23845578 | MS.gene052498:CDS |
| TTTGACACGCATCAATCCGC+AGG | 0.570857 | 4.3:+23842791 | MS.gene052498:CDS |
| AAACGGATCTCTATTTCCAT+AGG | 0.572538 | 4.3:-23844942 | None:intergenic |
| AGATAATGCTGGAACAAGCT+CGG | 0.575803 | 4.3:-23842712 | None:intergenic |
| GCAAATGACAACGGTTATGT+GGG | 0.575899 | 4.3:+23848450 | MS.gene052498:CDS |
| CCCACGGGATGGTGCACGAG+CGG | 0.575953 | 4.3:-23845484 | None:intergenic |
| CGGTCCCTTTACCATAGACC+TGG | 0.577777 | 4.3:-23849369 | None:intergenic |
| TGATGACTGTCAGATAATGC+TGG | 0.578075 | 4.3:-23842723 | None:intergenic |
| GTTCTCCTGCTAGAGAAGAA+GGG | 0.582396 | 4.3:+23845328 | MS.gene052498:CDS |
| ATAGATGCGTGTGGTGGAGG+TGG | 0.585050 | 4.3:-23845216 | None:intergenic |
| ATGGGACGAGGCTAAAATGC+AGG | 0.586932 | 4.3:+23849399 | MS.gene052498:CDS |
| CTGCCTCCTCTTTAGGCAGG+GGG | 0.587416 | 4.3:-23848497 | None:intergenic |
| ACAATAAATCCCCAGAAACA+TGG | 0.587554 | 4.3:-23842411 | None:intergenic |
| CTAGATAATTGCTCACGTCA+GGG | 0.588151 | 4.3:-23844737 | None:intergenic |
| CGCTCGTGCACCATCCCGTG+GGG | 0.589699 | 4.3:+23845485 | MS.gene052498:CDS |
| GCACGAGCGGAAACTTGTAC+AGG | 0.590581 | 4.3:-23845471 | None:intergenic |
| TTCTTCTCTTCAGTATACAA+TGG | 0.591221 | 4.3:+23845173 | MS.gene052498:CDS |
| GAAAGATGAAGTATACGCAC+AGG | 0.591633 | 4.3:+23848795 | MS.gene052498:CDS |
| GTTGGAAGTTAAGAGATCAA+CGG | 0.591847 | 4.3:+23848566 | MS.gene052498:CDS |
| GAGCAATTATCTAGTTTCAG+AGG | 0.592959 | 4.3:+23844746 | MS.gene052498:CDS |
| CAGATAACGAATGATAACTA+GGG | 0.593484 | 4.3:-23845840 | None:intergenic |
| TAGATAATTGCTCACGTCAG+GGG | 0.595191 | 4.3:-23844736 | None:intergenic |
| AGCTGCATCAGATCCATCAA+GGG | 0.595432 | 4.3:+23848530 | MS.gene052498:CDS |
| CGGAGCTACCTGATTGCAAG+AGG | 0.598380 | 4.3:+23843244 | MS.gene052498:CDS |
| CGGTGCTTCTCCATACGTGA+TGG | 0.599393 | 4.3:-23845588 | None:intergenic |
| TCTGCATATGGTGATGTGAG+TGG | 0.601289 | 4.3:+23848417 | MS.gene052498:CDS |
| CGGAAACTTGTACAGGATTG+GGG | 0.602565 | 4.3:-23845464 | None:intergenic |
| CAGGAAATTGCACTGAAGTG+TGG | 0.604310 | 4.3:+23846466 | MS.gene052498:CDS |
| GTAAAGGGACCGGATTAACA+TGG | 0.605523 | 4.3:+23849380 | MS.gene052498:CDS |
| TGAAGAGAAGAAGTGAGCCT+GGG | 0.609026 | 4.3:-23845162 | None:intergenic |
| GCGATACAAGTGTTCTTGTG+AGG | 0.609671 | 4.3:+23843197 | MS.gene052498:CDS |
| GACGACAGACCATGTTTCTG+GGG | 0.612175 | 4.3:+23842402 | MS.gene052498:CDS |
| GTGATGACATCCCCTTTGGT+AGG | 0.612760 | 4.3:+23846365 | MS.gene052498:CDS |
| TTGCTCACGTCAGGGGCAGG+AGG | 0.612851 | 4.3:-23844729 | None:intergenic |
| GGATGAGAAAGATCAACCTC+GGG | 0.613520 | 4.3:+23844070 | MS.gene052498:CDS |
| TTCTTGCAACGCATAAGACA+GGG | 0.614336 | 4.3:-23844272 | None:intergenic |
| GCATTGTATTTGCTACGACA+AGG | 0.614622 | 4.3:-23842512 | None:intergenic |
| TGTGAGGTTGAGACCTGCAT+GGG | 0.616136 | 4.3:+23843213 | MS.gene052498:CDS |
| ACGAATTTCTGGCATGCAGG+CGG | 0.618925 | 4.3:+23842596 | MS.gene052498:CDS |
| AGCTGTTATGCCGATGTATG+GGG | 0.618991 | 4.3:+23842344 | None:intergenic |
| GGGATGGTTTCCTGTAGAAG+AGG | 0.619654 | 4.3:+23845506 | MS.gene052498:CDS |
| CAACTGCTAAGTTAGATCCC+AGG | 0.623962 | 4.3:+23845145 | MS.gene052498:CDS |
| CCACCAGAGATTGCCAAAGG+AGG | 0.628128 | 4.3:+23845680 | MS.gene052498:CDS |
| GGTTGAAGGAACTGTGCGTG+AGG | 0.629555 | 4.3:-23845249 | None:intergenic |
| ACATCACCATATGCAGAACC+AGG | 0.630395 | 4.3:-23848411 | None:intergenic |
| TGGTTCACAACCACCAAACA+GGG | 0.630610 | 4.3:+23845533 | MS.gene052498:CDS |
| TTTCCTAATGCAAATGACAA+CGG | 0.637618 | 4.3:+23848441 | MS.gene052498:CDS |
| GCTAGAAGATGACCTACCAA+AGG | 0.638457 | 4.3:-23846377 | None:intergenic |
| TGATGGCATGGCAGATGCTG+AGG | 0.638496 | 4.3:+23844970 | MS.gene052498:CDS |
| GTTTGACTTCTACAGGACGA+TGG | 0.638977 | 4.3:+23844911 | MS.gene052498:intron |
| CATCACGTATGGAGAAGCAC+CGG | 0.639675 | 4.3:+23845589 | MS.gene052498:CDS |
| GGGATGAGAAAGATCAACCT+CGG | 0.640588 | 4.3:+23844069 | MS.gene052498:CDS |
| ATGCAAGCTTGATTCTAAAG+GGG | 0.641469 | 4.3:-23845304 | None:intergenic |
| TGTAATTCTTCCCCATACAT+CGG | 0.643719 | 4.3:-23842354 | None:intergenic |
| GACCGGATTAACATGGGACG+AGG | 0.645213 | 4.3:+23849387 | MS.gene052498:CDS |
| GTTGCTTGCAATGTTAGGGG+TGG | 0.645636 | 4.3:+23844297 | MS.gene052498:CDS |
| AGCGCGATATAAGGCTGCTG+AGG | 0.646369 | 4.3:+23847180 | MS.gene052498:CDS |
| TAGGTCATCTTCTAGCCACA+GGG | 0.647886 | 4.3:+23846384 | MS.gene052498:CDS |
| TGCATGCCAGAAATTCGTTG+TGG | 0.649838 | 4.3:-23842591 | None:intergenic |
| GAGCCACCAGAGATTGCCAA+AGG | 0.656225 | 4.3:+23845677 | MS.gene052498:CDS |
| ATACTATGCTCCTCAAGCTG+AGG | 0.657687 | 4.3:+23844118 | MS.gene052498:CDS |
| TGCTACACCAGTAAAGCCAA+TGG | 0.658626 | 4.3:+23845272 | MS.gene052498:CDS |
| TAGACCCAGATACAAGGCGA+AGG | 0.659790 | 4.3:+23845370 | MS.gene052498:CDS |
| GGAGCTACCTGATTGCAAGA+GGG | 0.659861 | 4.3:+23843245 | MS.gene052498:CDS |
| TGACGATCGCTTGAAAGTGT+GGG | 0.665059 | 4.3:+23844049 | MS.gene052498:CDS |
| TTGTGAGGTTGAGACCTGCA+TGG | 0.665083 | 4.3:+23843212 | MS.gene052498:CDS |
| GGGTGTCTAATGGGAAATGG+AGG | 0.665273 | 4.3:-23845444 | None:intergenic |
| GCAGGAACGACGTGTACCCG+AGG | 0.674336 | 4.3:-23844086 | None:intergenic |
| TAGAATGAAGGATACCTCGA+TGG | 0.674889 | 4.3:-23846672 | None:intergenic |
| AGACGAATTATAAAGTCCTG+TGG | 0.679453 | 4.3:-23842436 | None:intergenic |
| GGAGATCAAGCGCTACCAAG+AGG | 0.682061 | 4.3:+23842617 | MS.gene052498:CDS |
| AGGCTTCTCATATTGCAACA+TGG | 0.682388 | 4.3:+23845390 | MS.gene052498:CDS |
| AATGTTGCTTGCAATGTTAG+GGG | 0.688191 | 4.3:+23844294 | MS.gene052498:CDS |
| TAAAGGGACCGGATTAACAT+GGG | 0.691890 | 4.3:+23849381 | MS.gene052498:CDS |
| GCTCGTGCACCATCCCGTGG+GGG | 0.693202 | 4.3:+23845486 | MS.gene052498:CDS |
| TGTATCATAGATGCGTGTGG+TGG | 0.697988 | 4.3:-23845222 | None:intergenic |
| CCAGAGAAAAGTAAACTCTG+AGG | 0.714229 | 4.3:+23842563 | MS.gene052498:CDS |
| TAGAAGATGACCTACCAAAG+GGG | 0.717447 | 4.3:-23846375 | None:intergenic |
| AGAGCTGCAGTTCTCCATCG+AGG | 0.747831 | 4.3:+23846658 | MS.gene052498:CDS |
| AATTGTATCATAGATGCGTG+TGG | 0.754034 | 4.3:-23845225 | None:intergenic |
| ATTCAGAGTCAAGATCCCTG+TGG | 0.788306 | 4.3:-23846399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23842351 | 23850046 | 23842351 | ID=MS.gene052498 |
| chr4.3 | mRNA | 23842351 | 23850046 | 23842351 | ID=MS.gene052498.t1;Parent=MS.gene052498 |
| chr4.3 | exon | 23842351 | 23842812 | 23842351 | ID=MS.gene052498.t1.exon1;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23842351 | 23842812 | 23842351 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23843193 | 23843403 | 23843193 | ID=MS.gene052498.t1.exon2;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23843193 | 23843403 | 23843193 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23843982 | 23844139 | 23843982 | ID=MS.gene052498.t1.exon3;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23843982 | 23844139 | 23843982 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23844258 | 23844328 | 23844258 | ID=MS.gene052498.t1.exon4;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23844258 | 23844328 | 23844258 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23844662 | 23844767 | 23844662 | ID=MS.gene052498.t1.exon5;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23844662 | 23844767 | 23844662 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23844926 | 23845009 | 23844926 | ID=MS.gene052498.t1.exon6;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23844926 | 23845009 | 23844926 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23845111 | 23845701 | 23845111 | ID=MS.gene052498.t1.exon7;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23845111 | 23845701 | 23845111 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23845799 | 23845862 | 23845799 | ID=MS.gene052498.t1.exon8;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23845799 | 23845862 | 23845799 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23846365 | 23846495 | 23846365 | ID=MS.gene052498.t1.exon9;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23846365 | 23846495 | 23846365 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23846626 | 23846679 | 23846626 | ID=MS.gene052498.t1.exon10;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23846626 | 23846679 | 23846626 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23847127 | 23847223 | 23847127 | ID=MS.gene052498.t1.exon11;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23847127 | 23847223 | 23847127 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23848382 | 23848614 | 23848382 | ID=MS.gene052498.t1.exon12;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23848382 | 23848614 | 23848382 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23848727 | 23848816 | 23848727 | ID=MS.gene052498.t1.exon13;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23848727 | 23848816 | 23848727 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23849355 | 23849420 | 23849355 | ID=MS.gene052498.t1.exon14;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23849355 | 23849420 | 23849355 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| chr4.3 | exon | 23849948 | 23850046 | 23849948 | ID=MS.gene052498.t1.exon15;Parent=MS.gene052498.t1 |
| chr4.3 | CDS | 23849948 | 23850046 | 23849948 | ID=cds.MS.gene052498.t1;Parent=MS.gene052498.t1 |
| Gene Sequence |
| Protein sequence |
