AlfalfaGEDB | MS.gene33818

M. sativa cultivar XinJiangDaYe / MS.gene33818

KEGG: K10875
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33818.t1	RHN62407.1	87.6	1259	84	5	1	1206	1	1240	0.00E+00	1739.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33818.t1	F4I8S3	43.8	827	363	18	466	1206	592	1402	7.7e-169	596.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33818.t1	A0A396IHP4	87.6	1259	84	5	1	1206	1	1240	0.0e+00	1739.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene33818.t1	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene022066	MS.gene33818	PPI
MS.gene33818	MS.gene43202	PPI
MS.gene44795	MS.gene33818	PPI
MS.gene92015	MS.gene33818	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33818.t1	MTR_4g088650	88.781	1239	85	8	1	1206	1	1218	0.0	2039
MS.gene33818.t1	MTR_7g450820	68.711	1288	260	19	1	1202	1	1231	0.0	1555
MS.gene33818.t1	MTR_7g450790	79.007	886	109	4	396	1206	556	1439	0.0	1375
MS.gene33818.t1	MTR_7g450790	40.000	500	207	18	1	441	1	466	8.95e-44	174
MS.gene33818.t1	MTR_7g029525	72.967	984	171	14	305	1206	354	1324	0.0	1342
MS.gene33818.t1	MTR_7g029525	41.107	253	96	11	1	233	1	220	1.25e-25	115
MS.gene33818.t1	MTR_7g050445	54.157	1335	432	28	1	1206	15	1298	0.0	1128
MS.gene33818.t1	MTR_7g450780	62.938	885	245	14	395	1206	472	1346	0.0	1019
MS.gene33818.t1	MTR_7g450860	56.973	1011	293	17	309	1202	284	1269	0.0	1002
MS.gene33818.t1	MTR_2g084695	61.864	354	16	3	900	1206	9	290	5.56e-124	384

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33818.t1	AT1G05490	44.321	810	350	18	484	1206	607	1402	0.0	618
MS.gene33818.t1	AT3G24340	46.418	698	315	11	549	1205	448	1127	0.0	576
MS.gene33818.t1	AT3G42670	33.848	712	375	17	559	1190	546	1241	2.98e-103	355
MS.gene33818.t1	AT3G42670	33.848	712	375	17	559	1190	546	1241	2.98e-103	355
MS.gene33818.t1	AT3G42670	33.848	712	375	17	559	1190	546	1241	2.98e-103	355
MS.gene33818.t1	AT3G42670	34.467	676	352	15	591	1190	583	1243	1.25e-102	353
MS.gene33818.t1	AT5G20420	33.011	724	369	18	559	1192	552	1249	1.73e-99	345
MS.gene33818.t1	AT2G16390	29.905	632	323	19	591	1156	273	850	8.95e-65	238
MS.gene33818.t1	AT2G16390	29.905	632	323	19	591	1156	270	847	1.36e-64	237
MS.gene33818.t1	AT2G21450	40.586	239	131	5	926	1156	545	780	1.80e-39	159

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Find 229 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTCAATGTGGTGG+AGG	0.544267	4.4:-24131948	MS.gene33818:CDS
AAAAGAGTGGAATTTCTGAG+AGG	0.692681	4.4:-24131799	MS.gene33818:CDS
AAAATAAGCTTCCTGGGTTA+AGG	0.301129	4.4:-24128824	MS.gene33818:CDS
AAACAATGGAGAACAAAAGA+AGG	0.476489	4.4:-24131313	MS.gene33818:CDS
AAAGACCAGGGAGGAAGAGG+TGG	0.558289	4.4:-24131003	MS.gene33818:CDS
AAAGCTCCCAGAAATTGTTC+TGG	0.406710	4.4:+24129058	None:intergenic
AAAGGTACAAAAGACCAGGG+AGG	0.795140	4.4:-24131012	MS.gene33818:CDS
AAATAAGCTTCCTGGGTTAA+GGG	0.369051	4.4:-24128823	MS.gene33818:CDS
AACAAAAGAAGGGATTATAA+AGG	0.423892	4.4:-24131302	MS.gene33818:CDS
AACAATGGAGAACAAAAGAA+GGG	0.595321	4.4:-24131312	MS.gene33818:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATGGAGAACAAAAGA+AGG	-	chr4.4:24129332-24129351	MS.gene33818:CDS	30.0%
AAAGGTGAAGAGTCAAAAAA+GGG	-	chr4.4:24128730-24128749	MS.gene33818:CDS	30.0%
AACAATGGAGAACAAAAGAA+GGG	-	chr4.4:24129333-24129352	MS.gene33818:CDS	30.0%
AACTCCTTGTTAAATGCTAT+TGG	-	chr4.4:24129473-24129492	MS.gene33818:CDS	30.0%
ACTCCTTGTTAAATGCTATT+GGG	-	chr4.4:24129474-24129493	MS.gene33818:CDS	30.0%
AGAAGATGATGTTGTTAAAG+AGG	-	chr4.4:24128406-24128425	MS.gene33818:CDS	30.0%
AGTAAAAAGTGATGAAAGTG+GGG	-	chr4.4:24128430-24128449	MS.gene33818:CDS	30.0%
AGTAAAAGAGAACCAAACAA+CGG	+	chr4.4:24128035-24128054	None:intergenic	30.0%
AGTTCTTCTTCTAAACTGAA+TGG	-	chr4.4:24129076-24129095	MS.gene33818:CDS	30.0%
ATCATCATCATCAACATAAG+AGG	+	chr4.4:24128633-24128652	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	24127993	24132674	24127993	ID=MS.gene33818
chr4.4	mRNA	24127993	24132674	24127993	ID=MS.gene33818.t1;Parent=MS.gene33818
chr4.4	exon	24130944	24132674	24130944	ID=MS.gene33818.t1.exon1;Parent=MS.gene33818.t1
chr4.4	CDS	24130944	24132674	24130944	ID=cds.MS.gene33818.t1;Parent=MS.gene33818.t1
chr4.4	exon	24130575	24130709	24130575	ID=MS.gene33818.t1.exon2;Parent=MS.gene33818.t1
chr4.4	CDS	24130575	24130709	24130575	ID=cds.MS.gene33818.t1;Parent=MS.gene33818.t1
chr4.4	exon	24128998	24129886	24128998	ID=MS.gene33818.t1.exon3;Parent=MS.gene33818.t1
chr4.4	CDS	24128998	24129886	24128998	ID=cds.MS.gene33818.t1;Parent=MS.gene33818.t1
chr4.4	exon	24127993	24128858	24127993	ID=MS.gene33818.t1.exon4;Parent=MS.gene33818.t1
chr4.4	CDS	24127993	24128858	24127993	ID=cds.MS.gene33818.t1;Parent=MS.gene33818.t1

Gene Sequence

>MS.gene33818

ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTTCTCTTTTACTCGGTGGTTCATCAAAACGGAGACAGAGTGATGAAGAAGATAAGGGTTTGGACTATGTTTCTGGTTCTAAAAAAAGGAAGATGAACAAAGAAGCTTTTGTTGTTCCTGCAGATGCTGAGGTAGTTTCCATCGATGATGATGATGATGAATATGAAGATGTTGGTCAAGAAGGGTCAGAGCATAGTGATGAGAAGATGTCTAAAGATGGAAAGTTTGTTGATGAAAAGTGTGAGAGGGCACAGGATAACCCGGTTTCGATGAGTTCAGATGAGTATGGTGAAAGTGATGAAGAACACTTTGTTGATTCTGATGCTGATAATGAAGAAGAAGAAGAAGACGAAGAAAAAAAGAAAGAAGATGATGTTGTTAAAGAGGGAGTAAAAAGTGATGAAAGTGGGGGAATTGGTAGGTTTTCTGATAAAGGTGAAAAGGTTATAATTGATTTGGATGATTCTGAGGAGAGTGAGGAGGAGGAGGATTCTGATGAGAGTGAAGAAAATGACTCTAGTGATGAAGATTTTGCAGTTGATGAACTGAATGAAATTTCAGACAATGATGATGACAGTTCTTCTAGCTCCTCTTATGTTGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGACGAGAAAAAAGAGGGTTATAGAAAAGACTTCAATGTGGTGGAGGAATTAGTAAGAAAGGTGAAGAGTCAAAAAAGGGGAATTTCTGAGGGTAATAATGAGGAAGTAGATGTTGAGAATAGTTCATCTTCTGATAATGATGATGAGGAGATGGTGAGAGAGGGGAAGGATAAAAAGAGTGGAATTTCTGAGAGGAATAATGAGAAGGTAAATGTTGAGAATAGTCCATCTTATGATAATGATGAAGAAATGGTGAGAGAGGTGAAGGGTAAAAAAAGTGGAATTTTTAAGAGGAAATATGAGAAGGTAGAGAATGAGAATAGTCCATCTTCCACAAATATTGATGAGTTGGAGCATGCATATCATGCTAGTGTTTCCTCCTGTACCATTGAGAAGAAGGGTAGTTCTTCTTCTAAACTGAATGGAGTATTAGAGACACTGAAACCAATGAGTGTGGAAGTGAAAGTGAAAAATCTCTCTGATGAATGTGTGAATGTTGGAGTGAATGCCAAGTCAAAAGCCAAATCCAAAGACAAAACCAAAGAAAATTTTGGTGATTCTGATCGAGGAAAAGATCAATTTGTTAAAGGCTTAGATGTTGAAGGAGTTTCTTCAGTTCATAAGAAGCAAGAAAAGATGAAGGAATCAGATAAACAGAAAACAATGGAGAACAAAAGAAGGGATTATAAAGGTAGAGCTAACATCTGTAATGGTGAGAAGAAGGAATCTATAGATAACAATAGTTTGAATCAAAGCGTCAAAAGCACAAATTTTACGCGGAAGGAGTTGCGTTCACTCGAACTCCTTGTTAAATGCTATTGGGAAAGAAAGAATACCATGAACAATGATTCAATTGTGTTGGAGGTCAACGACGATGGTGTTGGTCAGCAAGATACACGGTCACCACCATTCTCTGTGGAGACACCTCGTGAACGGATATGGAGCCTTAAAAAGGTGGAAAAGGTACAAAAGACCAGGGAGGAAGAGGTGGAGGAAGTGTTATGGGATGAATTTGATACAGCCCGTAGAGAATCTGACGCTGAATCCATGGTAATCCTCCTCTATAAGAACATTTAAATTTGAACTTTGCTTTTAAATTTTAATTTGTGAACTATAGGACTAGTGCTTAAGCTTTGTGAACTAATAGCACTAGTGCTTAAGCTGATTTTGATTTTTAATTTAAACTGTTTATATGTTAAACTTTGGTGATCTAAATGATATCTATAAGATTCACAATGAGATTCGTAAGGAAAAATCAGTGACATAGCGTGTTACTCTCTGCAGATTGGAAATTTAGGAGAAAACGGAGGTCCATCGTTCCGCTGTGAACATGATACTTTTCTCGATGAAGAGATTGGTCTATTTTGCAAATTGTGTTATGAGGTTGTTACTGAGATCAAATATATCTCACCACCTGTGGTAAGCACTGTTTCATGTTATTTATGTAAAATAGCCTGGTTAATTTTTTAATTTTGATCTGGATAGCGAAATTTTAAAAAAATGCTATTGTTCCGCAATAGGCGGCGATTCAATATTAAGTGTTGTCTAATTGTGTGGCTAAAGTGGCGCTATTTTGAACATACCGCCTTATTTTGTGATCCTCGATTGACAAACTGATTCACATTATTTTTTCATTCTCAATACATTAAAATTCGCAATATATGTTAAAACTGAAGAGAAAGGACCAATTTCTGTGATATTCAATGTATTATTATGATTTATGGCATTATAATGACATTTAGTACTCATGTTGTAATGGAAAAGGACCTTAGTTGTATGTTTGTTCTGATACGAGACACATGTTTGTTCTGGAAAAGGACCTTACTTGACACTTTACTGATATGAGACTTTGATAACAATTTGACTTTTTTTTTTAAGGGAATTGATAATAATTTAATGAAAATGACAAATAAATAGGATTACATTTTTTACTACATAAGAGACAGTTAAAAAAGATCGGATAGTTAAGTATTTTTCCATTTATTTGTTTTTTCTCAGGTTATTTCAATAATTTTTCTTGCTGTTAGATTAATATTTTGACATCACGCTGATATAAGGTTTGATAAGAGGCACTGAATTTTGCATACTTGTTTTTCACGTGACACAGATTGATAGATTTCCCGGTGAAGGTTCAGGAAAAAAAGCATCATTTGATGGAGTAAATGTTTCACATGTTGATGGATCTCAGTTAAATGTTTCTGATAATGATTCAGAGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAAAATTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGACACACTGAGCTTCAAAAGTTAAAGAATTCCGATCCTTCCAGCGAAGGTGGCTGTATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTATACTACTAACTTGGGAGGATGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCCGGGTTATCTGGTAAAGAGCATCCTGATGCGGTTGAAACATTCGATATGTTTAATACACAGCATAATATTCATGAAACACGGATGGCAAAACTGATTTCTTGGTTCAAAGAACCAAGCATTCTTGGAATCAGCTACAATTTGTTTGGGAAAAAATGCCAAGATAAGAGAAAGCATGAAAATGTGAATGAGAGAGAAGGAAACTGTGATATGCGAAAGGTTCTACTTAATTCTCCTGGGTTGTTAGTTCTAGACGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTTTCGAAGCTTCAAACACAGAAGCGTATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTAGTGAAGCCTTCTTTTCCTAACACAATACCGCCTGAGCTAAAAAGTTTTTGCCAAAATCAGGGACTTAAATCATCTAAAAAATGGAATTGGGAACCAGTGTTGCTCAACAAAACGAGACCCTTCTTATGATCAGATCAAGAAGTTTAAATTGCTAATGGATCCCTTTGTTCATGTGCACAAAGGCGCGATCCTTGAAAATAAGCTTCCTGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCTGGTAGTTTGCAGAATGAAATTCTGAAGAGGATTACACGTTCTCAGAACACAATATTTAACTTTGAACGTAAGGTAGCATTAACATCTGTCCATCCATCGCTTTTCCTTGAATGTGCCCTTTCAGAAGAAGAAAAATCTGCTCTCGACAAGGATCAGCTGGAAAAGCTTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTGGAGTTTGTTCGGCTATGTGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCATGCTCCTTTACAATTAATTAAAGACCAATTAAACTCAGCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGGTCATGTCTGGCGAGGATCCTCCAAAGGTCAAGCAATCCGTAATCCATAGCTTCAACGATGAAAATTGCCAAGCAAAGGTTTTACTTGCATCTACAAAAGCTTGTTCTGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTGGTATTTCTGGATGTTGTATGGAATCCTTCGGTCGAAAGACAAGCTATCAGCCGAGCGTATAGGATTGGTCAGAAGAGAGTAGTATACACGTACCATCTGCTCGCTGAAGGGACTACCGAGGAAGAAAAATATGGTAAACAGACCGAAAAAGAAAGGTTATCTGAGCTCGTTTTTTCAGCAAAAAATGCTGCCAATAATGGTGATAAGTCCAAGAGCTCTTCAGTGAACTTCGAAGATAGAGTTCTTGATGAGATGACTAAGCACGAAAAGCTCAAAGGCATATTTGTTAAGTGCGTAGTACTGAGGAAGGAGCTAGATGTGGTCTGA

Protein sequence

>MS.gene33818.t1

MAGVSSRTRSKNVPLFGSLLLGGSSKRRQSDEEDKGLDYVSGSKKRKMNKEAFVVPADAEVVSIDDDDDEYEDVGQEGSEHSDEKMSKDGKFVDEKCERAQDNPVSMSSDEYGESDEEHFVDSDADNEEEEEDEEKKKEDDVVKEGVKSDESGGIGRFSDKGEKVIIDLDDSEESEEEEDSDESEENDSSDEDFAVDELNEISDNDDDSSSSSSYVDDDDEEEEEEEDEKKEGYRKDFNVVEELVRKVKSQKRGISEGNNEEVDVENSSSSDNDDEEMVREGKDKKSGISERNNEKVNVENSPSYDNDEEMVREVKGKKSGIFKRKYEKVENENSPSSTNIDELEHAYHASVSSCTIEKKGSSSSKLNGVLETLKPMSVEVKVKNLSDECVNVGVNAKSKAKSKDKTKENFGDSDRGKDQFVKGLDVEGVSSVHKKQEKMKESDKQKTMENKRRDYKGRANICNGEKKESIDNNSLNQSVKSTNFTRKELRSLELLVKCYWERKNTMNNDSIVLEVNDDGVGQQDTRSPPFSVETPRERIWSLKKVEKVQKTREEEVEEVLWDEFDTARRESDAESMIGNLGENGGPSFRCEHDTFLDEEIGLFCKLCYEVVTEIKYISPPVIDRFPGEGSGKKASFDGVNVSHVDGSQLNVSDNDSETNFSRNEGTVWDLIPGVKQKLYPHQQEGFEFIWKNLAGHTELQKLKNSDPSSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPGLSGKEHPDAVETFDMFNTQHNIHETRMAKLISWFKEPSILGISYNLFGKKCQDKRKHENVNEREGNCDMRKVLLNSPGLLVLDEGHTPRNQRSHIWKVFSKLQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKSAILENKLPGLRDCLVTLKAGSLQNEILKRITRSQNTIFNFERKVALTSVHPSLFLECALSEEEKSALDKDQLEKLRLNPHEGVKTKFLLEFVRLCDAFHEKVLVFSQFHAPLQLIKDQLNSAFKWSEGKEVLVMSGEDPPKVKQSVIHSFNDENCQAKVLLASTKACSEGISLVGASRVVFLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLAEGTTEEEKYGKQTEKERLSELVFSAKNAANNGDKSKSSSVNFEDRVLDEMTKHEKLKGIFVKCVVLRKELDVV