Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33912.t1 | XP_013469566.1 | 98.6 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 1.90E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33912.t1 | Q9SZ83 | 65.3 | 357 | 124 | 0 | 2 | 358 | 3 | 359 | 1.6e-138 | 493.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33912.t1 | A0A072VNJ9 | 98.6 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 1.4e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052169 | MS.gene33912 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene052378 | MS.gene33912 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene33912 | 0.806378 | 8.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33912.t1 | MTR_1g097250 | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 743 |
| MS.gene33912.t1 | MTR_6g038640 | 69.296 | 355 | 109 | 0 | 6 | 360 | 7 | 361 | 0.0 | 537 |
| MS.gene33912.t1 | MTR_6g038650 | 65.915 | 355 | 116 | 1 | 6 | 360 | 7 | 356 | 1.82e-180 | 504 |
| MS.gene33912.t1 | MTR_6g038390 | 61.017 | 354 | 138 | 0 | 6 | 359 | 9 | 362 | 1.48e-165 | 467 |
| MS.gene33912.t1 | MTR_6g038350 | 62.994 | 354 | 131 | 0 | 6 | 359 | 9 | 362 | 2.46e-160 | 454 |
| MS.gene33912.t1 | MTR_6g038370 | 62.994 | 354 | 131 | 0 | 6 | 359 | 9 | 362 | 2.46e-160 | 454 |
| MS.gene33912.t1 | MTR_6g066230 | 52.355 | 361 | 167 | 2 | 2 | 358 | 3 | 362 | 1.14e-138 | 399 |
| MS.gene33912.t1 | MTR_3g064900 | 49.300 | 357 | 177 | 2 | 6 | 358 | 7 | 363 | 1.25e-123 | 360 |
| MS.gene33912.t1 | MTR_6g038310 | 66.055 | 109 | 37 | 0 | 6 | 114 | 9 | 117 | 1.42e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33912.t1 | AT4G09670 | 65.266 | 357 | 124 | 0 | 2 | 358 | 3 | 359 | 3.65e-179 | 501 |
| MS.gene33912.t1 | AT1G34200 | 57.955 | 352 | 136 | 3 | 6 | 356 | 7 | 347 | 9.03e-144 | 411 |
| MS.gene33912.t1 | AT1G66130 | 39.227 | 362 | 207 | 6 | 6 | 358 | 7 | 364 | 1.89e-84 | 260 |
Find 89 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAATGGGGTTCAGTTTA+TGG | 0.156726 | 1.4:-75717165 | MS.gene33912:CDS |
| GAAGCAAATGCTTCTTATTC+TGG | 0.175761 | 1.4:+75717246 | None:intergenic |
| TAACAAAGATGGAGTTATAT+TGG | 0.254546 | 1.4:-75715916 | MS.gene33912:CDS |
| TAATCCTAGGACTGCTAAAA+TGG | 0.281705 | 1.4:-75717123 | MS.gene33912:CDS |
| TGGGAGCTTGTGAGGATAAT+GGG | 0.292083 | 1.4:-75717178 | MS.gene33912:CDS |
| CGGCGCAGATGGTGGCGTTT+GGG | 0.299088 | 1.4:+75717438 | None:intergenic |
| ACGGCGCAGATGGTGGCGTT+TGG | 0.303690 | 1.4:+75717437 | None:intergenic |
| CTGTTAAGTCTTCAATTCAT+AGG | 0.306990 | 1.4:-75715530 | MS.gene33912:CDS |
| GGCGTTTGGGGATAGGTTGA+TGG | 0.319210 | 1.4:+75717451 | None:intergenic |
| TCTTCCTCAAGAGGCTCTTT+TGG | 0.320296 | 1.4:-75715655 | MS.gene33912:CDS |
| GTGGGAGCTTGTGAGGATAA+TGG | 0.326462 | 1.4:-75717179 | MS.gene33912:CDS |
| GGTTACAGAATTTGCTCGTT+TGG | 0.362448 | 1.4:-75715634 | MS.gene33912:CDS |
| TTGATGATCTTGTTACTTGT+TGG | 0.364651 | 1.4:-75715713 | MS.gene33912:CDS |
| ACAATGGATATAACAGCTAT+TGG | 0.368508 | 1.4:-75715822 | MS.gene33912:CDS |
| GATGCTTCATTCTCTTCATA+AGG | 0.382468 | 1.4:+75715762 | None:intergenic |
| CCTCTGACAGCGAAGGTATA+CGG | 0.391217 | 1.4:-75717362 | MS.gene33912:CDS |
| CACTTAAGGTGCAAGCTTGT+TGG | 0.397452 | 1.4:+75717284 | None:intergenic |
| CGGCAACTACGAAGCTCTAC+TGG | 0.398318 | 1.4:-75717342 | MS.gene33912:CDS |
| CACAGCCTACTACTCCGATT+TGG | 0.398824 | 1.4:+75717501 | None:intergenic |
| TTCAATGATCCGCACCGCTT+TGG | 0.402052 | 1.4:-75717092 | MS.gene33912:CDS |
| CCGCAAGAACGGCCCACTTA+AGG | 0.402847 | 1.4:+75717270 | None:intergenic |
| GGCTTTGTCGTAGTTGCGGC+TGG | 0.408541 | 1.4:+75717412 | None:intergenic |
| ATTGTGGTGCATCACTATAT+TGG | 0.411258 | 1.4:-75715893 | MS.gene33912:CDS |
| GTCGTAGTTGCGGCTGGCGA+CGG | 0.414698 | 1.4:+75717418 | None:intergenic |
| GCCGCTTTCGCCACCGCCAA+TGG | 0.415224 | 1.4:-75717389 | MS.gene33912:CDS |
| AAGCAAATGCTTCTTATTCT+GGG | 0.425925 | 1.4:+75717247 | None:intergenic |
| GAACCATGTGCGTCAAGATC+TGG | 0.426777 | 1.4:+75716035 | None:intergenic |
| AGATGGTGGCGTTTGGGGAT+AGG | 0.426809 | 1.4:+75717444 | None:intergenic |
| CTTCACTCCTCAATCTGAAC+AGG | 0.431496 | 1.4:+75715498 | None:intergenic |
| ACAATTGGCCACTTCTTCTC+AGG | 0.432874 | 1.4:+75715582 | None:intergenic |
| ATAACAGCTATTGGAACAAA+AGG | 0.438590 | 1.4:-75715813 | MS.gene33912:CDS |
| CAACAAGCTTGCACCTTAAG+TGG | 0.446324 | 1.4:-75717283 | MS.gene33912:CDS |
| TCAGCAATATCCAGCGCAAC+GGG | 0.447221 | 1.4:+75717215 | None:intergenic |
| TGTTAAGTCTTCAATTCATA+GGG | 0.452020 | 1.4:-75715529 | MS.gene33912:CDS |
| TTGTGGTGCATCACTATATT+GGG | 0.454615 | 1.4:-75715892 | MS.gene33912:CDS |
| ATATACACAGCGTCCACATC+AGG | 0.464643 | 1.4:+75717314 | None:intergenic |
| TCTTGAGAAGCCCGTTGCGC+TGG | 0.465138 | 1.4:-75717225 | MS.gene33912:CDS |
| AGGTGCAAGCTTGTTGGTAG+TGG | 0.470113 | 1.4:+75717290 | None:intergenic |
| CTGATCCAAATCGGAGTAGT+AGG | 0.471545 | 1.4:-75717506 | MS.gene33912:CDS |
| AGAAGTGGCCAATTGTTAGT+AGG | 0.484377 | 1.4:-75715575 | MS.gene33912:CDS |
| ACTCCATCTTTGTTAAGCAC+TGG | 0.485256 | 1.4:+75715924 | None:intergenic |
| GCGGCTGGCGACGGCGCAGA+TGG | 0.488870 | 1.4:+75717427 | None:intergenic |
| TGCTGAGTTTGATGAAATTG+TGG | 0.489673 | 1.4:-75717198 | MS.gene33912:CDS |
| CCGCTTTGGTCAACTCAAAT+CGG | 0.490151 | 1.4:-75717078 | MS.gene33912:intron |
| GCCATTGGCGGTGGCGAAAG+CGG | 0.494977 | 1.4:+75717388 | None:intergenic |
| ATCTGCAGCAAATGTAAAGC+AGG | 0.496037 | 1.4:+75716091 | None:intergenic |
| CTATGTGGGTTCATAATCCT+AGG | 0.500670 | 1.4:-75717136 | MS.gene33912:CDS |
| TACAGAATTTGCTCGTTTGG+TGG | 0.508036 | 1.4:-75715631 | MS.gene33912:CDS |
| GCTGGCGACGGCGCAGATGG+TGG | 0.508895 | 1.4:+75717430 | None:intergenic |
| TCAGAAGCACTGATCCAAAT+CGG | 0.512386 | 1.4:-75717515 | MS.gene33912:CDS |
| CTTGACGCACATGGTTCTCT+AGG | 0.513476 | 1.4:-75716029 | MS.gene33912:CDS |
| CGCTGTCAGAGGGTAGCCAT+TGG | 0.518909 | 1.4:+75717373 | None:intergenic |
| TGTCAGAGGGTAGCCATTGG+CGG | 0.521007 | 1.4:+75717376 | None:intergenic |
| GCTGAGTTTGATGAAATTGT+GGG | 0.524578 | 1.4:-75717197 | MS.gene33912:CDS |
| CCTTAAGTGGGCCGTTCTTG+CGG | 0.525534 | 1.4:-75717270 | MS.gene33912:CDS |
| ACAGAATTTGCTCGTTTGGT+GGG | 0.526034 | 1.4:-75715630 | MS.gene33912:CDS |
| CATGGTTCTCTAGGTGATGC+AGG | 0.528921 | 1.4:-75716020 | MS.gene33912:CDS |
| TTTCTTAGCAAACTTGACAA+TGG | 0.530527 | 1.4:-75715838 | MS.gene33912:CDS |
| GGCGCAGATGGTGGCGTTTG+GGG | 0.530549 | 1.4:+75717439 | None:intergenic |
| CAGAGGGTAGCCATTGGCGG+TGG | 0.533110 | 1.4:+75717379 | None:intergenic |
| GTTTATGGATAATACTATGT+GGG | 0.534341 | 1.4:-75717150 | MS.gene33912:CDS |
| CCGTATACCTTCGCTGTCAG+AGG | 0.534458 | 1.4:+75717362 | None:intergenic |
| CTTATTCTGGGCCGCAAGAA+CGG | 0.540934 | 1.4:+75717259 | None:intergenic |
| GTTCGTAGTTGGCAGCTAAG+AGG | 0.542085 | 1.4:+75715976 | None:intergenic |
| AGAAACTTTACGAGCTATGT+CGG | 0.550870 | 1.4:+75717478 | None:intergenic |
| CGGCGGCTTTGTCGTAGTTG+CGG | 0.552909 | 1.4:+75717408 | None:intergenic |
| GTTCTCTAGGTGATGCAGGT+TGG | 0.556860 | 1.4:-75716016 | MS.gene33912:CDS |
| AGTTTATGGATAATACTATG+TGG | 0.557985 | 1.4:-75717151 | MS.gene33912:CDS |
| ACTCTAAGCCTGAGAAGAAG+TGG | 0.559686 | 1.4:-75715590 | MS.gene33912:CDS |
| ATTGGCGGTGGCGAAAGCGG+CGG | 0.561135 | 1.4:+75717391 | None:intergenic |
| CTCAGCAATATCCAGCGCAA+CGG | 0.568452 | 1.4:+75717214 | None:intergenic |
| GCATCACTATATTGGGAGGA+TGG | 0.568538 | 1.4:-75715885 | MS.gene33912:CDS |
| TAAAACTGATCTTCCTCAAG+AGG | 0.573676 | 1.4:-75715664 | MS.gene33912:CDS |
| GAACCAGTGCTTAACAAAGA+TGG | 0.577418 | 1.4:-75715927 | MS.gene33912:CDS |
| TGAAATTGTGGGAGCTTGTG+AGG | 0.599951 | 1.4:-75717186 | MS.gene33912:CDS |
| CGTATACCTTCGCTGTCAGA+GGG | 0.599957 | 1.4:+75717363 | None:intergenic |
| GGGAGCTTGTGAGGATAATG+GGG | 0.604851 | 1.4:-75717177 | MS.gene33912:CDS |
| AAGCCAGATCTTGACGCACA+TGG | 0.611601 | 1.4:-75716038 | MS.gene33912:CDS |
| GTTAAGCACTGGTTCACGTG+AGG | 0.613013 | 1.4:+75715935 | None:intergenic |
| AACAAGCTTGCACCTTAAGT+GGG | 0.617418 | 1.4:-75717282 | MS.gene33912:CDS |
| GATGGAGTTATATTGGATTG+TGG | 0.629420 | 1.4:-75715909 | MS.gene33912:CDS |
| GTTAAGTCTTCAATTCATAG+GGG | 0.633153 | 1.4:-75715528 | MS.gene33912:CDS |
| TTGAGTTGACCAAAGCGGTG+CGG | 0.636462 | 1.4:+75717083 | None:intergenic |
| TGGCTACCCTCTGACAGCGA+AGG | 0.653414 | 1.4:-75717369 | MS.gene33912:CDS |
| CCGATTTGAGTTGACCAAAG+CGG | 0.657625 | 1.4:+75717078 | None:intergenic |
| TATACACAGCGTCCACATCA+GGG | 0.659580 | 1.4:+75717315 | None:intergenic |
| GTAACCAAAAGAGCCTCTTG+AGG | 0.665837 | 1.4:+75715651 | None:intergenic |
| TCTACTGGAAGACCCTGATG+TGG | 0.699995 | 1.4:-75717327 | MS.gene33912:CDS |
| TGGTGCATCACTATATTGGG+AGG | 0.737696 | 1.4:-75715889 | MS.gene33912:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATTACTATACAAAAA+TGG | + | chr1.4:75716160-75716179 | None:intergenic | 15.0% |
| !! | ACTTGTTTACTTGTAAAATT+TGG | - | chr1.4:75716810-75716829 | MS.gene33912:intron | 20.0% |
| !! | CAAAGCTTAACAAATTTATT+TGG | + | chr1.4:75716014-75716033 | None:intergenic | 20.0% |
| !! | GAAAAAAATAGTGAAAACAA+AGG | - | chr1.4:75716368-75716387 | MS.gene33912:intron | 20.0% |
| !!! | ATTTTGAAATATTGATAGTG+TGG | - | chr1.4:75716761-75716780 | MS.gene33912:intron | 20.0% |
| !!! | TAAAATGACATTAAGTTGTT+CGG | - | chr1.4:75716608-75716627 | MS.gene33912:intron | 20.0% |
| !!! | TTGTTACTTCAAATATCATT+TGG | + | chr1.4:75716556-75716575 | None:intergenic | 20.0% |
| !!! | TTTTGAAATATTGATAGTGT+GGG | - | chr1.4:75716762-75716781 | MS.gene33912:intron | 20.0% |
| ! | AGTTTATGGATAATACTATG+TGG | - | chr1.4:75715867-75715886 | MS.gene33912:CDS | 25.0% |
| ! | GTTTATGGATAATACTATGT+GGG | - | chr1.4:75715868-75715887 | MS.gene33912:CDS | 25.0% |
| ! | TAACAAAGATGGAGTTATAT+TGG | - | chr1.4:75717102-75717121 | MS.gene33912:CDS | 25.0% |
| ! | TGTTAAGTCTTCAATTCATA+GGG | - | chr1.4:75717489-75717508 | MS.gene33912:CDS | 25.0% |
| !!! | GTTTTAACAGTACACTTAAT+TGG | + | chr1.4:75717340-75717359 | None:intergenic | 25.0% |
| AAGCAAATGCTTCTTATTCT+GGG | + | chr1.4:75715774-75715793 | None:intergenic | 30.0% | |
| ACAATGGATATAACAGCTAT+TGG | - | chr1.4:75717196-75717215 | MS.gene33912:CDS | 30.0% | |
| AGAGAGAAAAGAGAAAATAG+AGG | - | chr1.4:75716328-75716347 | MS.gene33912:intron | 30.0% | |
| ATAACAGCTATTGGAACAAA+AGG | - | chr1.4:75717205-75717224 | MS.gene33912:CDS | 30.0% | |
| ATGGTAGTAAGTACTCAAAT+TGG | - | chr1.4:75716471-75716490 | MS.gene33912:intron | 30.0% | |
| CACCACTTATATCAGTAAAT+AGG | + | chr1.4:75716883-75716902 | None:intergenic | 30.0% | |
| CTATTTACTGATATAAGTGG+TGG | - | chr1.4:75716881-75716900 | MS.gene33912:intron | 30.0% | |
| CTGTTAAGTCTTCAATTCAT+AGG | - | chr1.4:75717488-75717507 | MS.gene33912:CDS | 30.0% | |
| GAGAGAAAAGAGAAAATAGA+GGG | - | chr1.4:75716329-75716348 | MS.gene33912:intron | 30.0% | |
| GTTAAGTCTTCAATTCATAG+GGG | - | chr1.4:75717490-75717509 | MS.gene33912:CDS | 30.0% | |
| TGCCTATTTACTGATATAAG+TGG | - | chr1.4:75716878-75716897 | MS.gene33912:intron | 30.0% | |
| TTTCTTAGCAAACTTGACAA+TGG | - | chr1.4:75717180-75717199 | MS.gene33912:CDS | 30.0% | |
| ! | AAATTGGTTCTTGGATTTGT+AGG | - | chr1.4:75716487-75716506 | MS.gene33912:intron | 30.0% |
| ! | ATTTTCACCACTAGACTTTT+TGG | - | chr1.4:75716699-75716718 | MS.gene33912:intron | 30.0% |
| ! | TAAGTACTCAAATTGGTTCT+TGG | - | chr1.4:75716478-75716497 | MS.gene33912:intron | 30.0% |
| ! | TGTGTTTTCCTACTAACAAT+TGG | + | chr1.4:75717454-75717473 | None:intergenic | 30.0% |
| ! | TTGATGATCTTGTTACTTGT+TGG | - | chr1.4:75717305-75717324 | MS.gene33912:CDS | 30.0% |
| !! | AATGAAGCATCTTTTCATGT+TGG | - | chr1.4:75717268-75717287 | MS.gene33912:CDS | 30.0% |
| AATCAAATTTGTCGCTCTGT+TGG | - | chr1.4:75716582-75716601 | MS.gene33912:intron | 35.0% | |
| AATGAAGGAACGTAAACATG+AGG | - | chr1.4:75716257-75716276 | MS.gene33912:intron | 35.0% | |
| ACACAATTCGTAAGTAGGAT+CGG | - | chr1.4:75716286-75716305 | MS.gene33912:intron | 35.0% | |
| ACACTCGATCTTTACTACAA+TGG | - | chr1.4:75716452-75716471 | MS.gene33912:intron | 35.0% | |
| ACGTAACACAATTCGTAAGT+AGG | - | chr1.4:75716281-75716300 | MS.gene33912:intron | 35.0% | |
| ACTTTGTCCAAAAAGTCTAG+TGG | + | chr1.4:75716709-75716728 | None:intergenic | 35.0% | |
| AGAAACTTTACGAGCTATGT+CGG | + | chr1.4:75715543-75715562 | None:intergenic | 35.0% | |
| ATCAAATTTGTCGCTCTGTT+GGG | - | chr1.4:75716583-75716602 | MS.gene33912:intron | 35.0% | |
| ATTGTGGTGCATCACTATAT+TGG | - | chr1.4:75717125-75717144 | MS.gene33912:CDS | 35.0% | |
| CCAAAAATAACAGTAGAGCT+AGG | + | chr1.4:75715987-75716006 | None:intergenic | 35.0% | |
| GAAGCAAATGCTTCTTATTC+TGG | + | chr1.4:75715775-75715794 | None:intergenic | 35.0% | |
| GACTGCAAAGTTTGATATGT+TGG | - | chr1.4:75716654-75716673 | MS.gene33912:intron | 35.0% | |
| GATGCTTCATTCTCTTCATA+AGG | + | chr1.4:75717259-75717278 | None:intergenic | 35.0% | |
| GATGGAGTTATATTGGATTG+TGG | - | chr1.4:75717109-75717128 | MS.gene33912:CDS | 35.0% | |
| GCTGAGTTTGATGAAATTGT+GGG | - | chr1.4:75715821-75715840 | MS.gene33912:CDS | 35.0% | |
| TAAAACTGATCTTCCTCAAG+AGG | - | chr1.4:75717354-75717373 | MS.gene33912:CDS | 35.0% | |
| TAAGACTTTCAGACTTGAGA+AGG | + | chr1.4:75716038-75716057 | None:intergenic | 35.0% | |
| TAATCCTAGGACTGCTAAAA+TGG | - | chr1.4:75715895-75715914 | MS.gene33912:CDS | 35.0% | |
| TCAAAGTCAAGATGTAGGAT+TGG | - | chr1.4:75716228-75716247 | MS.gene33912:intron | 35.0% | |
| TCATGTTTACGTTCCTTCAT+TGG | + | chr1.4:75716258-75716277 | None:intergenic | 35.0% | |
| TGCTGAGTTTGATGAAATTG+TGG | - | chr1.4:75715820-75715839 | MS.gene33912:CDS | 35.0% | |
| TGTAGTCAAAGTCAAGATGT+AGG | - | chr1.4:75716223-75716242 | MS.gene33912:intron | 35.0% | |
| TTGTAGTAAAGATCGAGTGT+TGG | + | chr1.4:75716452-75716471 | None:intergenic | 35.0% | |
| TTGTGGTGCATCACTATATT+GGG | - | chr1.4:75717126-75717145 | MS.gene33912:CDS | 35.0% | |
| !! | ATTGATAGTGTGGGAGATTA+AGG | - | chr1.4:75716771-75716790 | MS.gene33912:intron | 35.0% |
| !!! | CCTAGCTCTACTGTTATTTT+TGG | - | chr1.4:75715984-75716003 | MS.gene33912:CDS | 35.0% |
| AACAAGCTTGCACCTTAAGT+GGG | - | chr1.4:75715736-75715755 | MS.gene33912:CDS | 40.0% | |
| AATTCGTAAGTAGGATCGGT+AGG | - | chr1.4:75716290-75716309 | MS.gene33912:intron | 40.0% | |
| ACTCCATCTTTGTTAAGCAC+TGG | + | chr1.4:75717097-75717116 | None:intergenic | 40.0% | |
| AGAAGTGGCCAATTGTTAGT+AGG | - | chr1.4:75717443-75717462 | MS.gene33912:CDS | 40.0% | |
| ATAGGCAATGAACATGCAGT+CGG | + | chr1.4:75716865-75716884 | None:intergenic | 40.0% | |
| ATCTGCAGCAAATGTAAAGC+AGG | + | chr1.4:75716930-75716949 | None:intergenic | 40.0% | |
| CAGAGCGACAAATTTGATTG+AGG | + | chr1.4:75716581-75716600 | None:intergenic | 40.0% | |
| CTATGTGGGTTCATAATCCT+AGG | - | chr1.4:75715882-75715901 | MS.gene33912:CDS | 40.0% | |
| CTGATATAAGTGGTGGCTTT+CGG | - | chr1.4:75716888-75716907 | MS.gene33912:intron | 40.0% | |
| GAACCAGTGCTTAACAAAGA+TGG | - | chr1.4:75717091-75717110 | MS.gene33912:CDS | 40.0% | |
| TGATATAAGTGGTGGCTTTC+GGG | - | chr1.4:75716889-75716908 | MS.gene33912:intron | 40.0% | |
| ! | ACAGAATTTGCTCGTTTGGT+GGG | - | chr1.4:75717388-75717407 | MS.gene33912:CDS | 40.0% |
| ! | AGTCAAGATGTAGGATTGGT+CGG | - | chr1.4:75716232-75716251 | MS.gene33912:intron | 40.0% |
| ! | GGTTACAGAATTTGCTCGTT+TGG | - | chr1.4:75717384-75717403 | MS.gene33912:CDS | 40.0% |
| ! | GTGAGGCTATCACTGTTTTA+GGG | + | chr1.4:75717069-75717088 | None:intergenic | 40.0% |
| ! | TACAGAATTTGCTCGTTTGG+TGG | - | chr1.4:75717387-75717406 | MS.gene33912:CDS | 40.0% |
| ! | TTTTGAGCCTGTTCAGATTG+AGG | - | chr1.4:75717513-75717532 | MS.gene33912:CDS | 40.0% |
| !! | GGATAATGGGGTTCAGTTTA+TGG | - | chr1.4:75715853-75715872 | MS.gene33912:CDS | 40.0% |
| !! | TCAGAAGCACTGATCCAAAT+CGG | - | chr1.4:75715503-75715522 | MS.gene33912:CDS | 40.0% |
| !!! | TGTTTTAGGGAGTTCGTAGT+TGG | + | chr1.4:75717056-75717075 | None:intergenic | 40.0% |
| ACAATTGGCCACTTCTTCTC+AGG | + | chr1.4:75717439-75717458 | None:intergenic | 45.0% | |
| ACTCTAAGCCTGAGAAGAAG+TGG | - | chr1.4:75717428-75717447 | MS.gene33912:CDS | 45.0% | |
| ATATACACAGCGTCCACATC+AGG | + | chr1.4:75715707-75715726 | None:intergenic | 45.0% | |
| CAACAAGCTTGCACCTTAAG+TGG | - | chr1.4:75715735-75715754 | MS.gene33912:CDS | 45.0% | |
| CACTTAAGGTGCAAGCTTGT+TGG | + | chr1.4:75715737-75715756 | None:intergenic | 45.0% | |
| CCGCTTTGGTCAACTCAAAT+CGG | - | chr1.4:75715940-75715959 | MS.gene33912:CDS | 45.0% | |
| CTGATCCAAATCGGAGTAGT+AGG | - | chr1.4:75715512-75715531 | MS.gene33912:CDS | 45.0% | |
| GCATCACTATATTGGGAGGA+TGG | - | chr1.4:75717133-75717152 | MS.gene33912:CDS | 45.0% | |
| GTAACCAAAAGAGCCTCTTG+AGG | + | chr1.4:75717370-75717389 | None:intergenic | 45.0% | |
| TAGGCAATGAACATGCAGTC+GGG | + | chr1.4:75716864-75716883 | None:intergenic | 45.0% | |
| TATACACAGCGTCCACATCA+GGG | + | chr1.4:75715706-75715725 | None:intergenic | 45.0% | |
| TGAAATTGTGGGAGCTTGTG+AGG | - | chr1.4:75715832-75715851 | MS.gene33912:CDS | 45.0% | |
| TGGGAGCTTGTGAGGATAAT+GGG | - | chr1.4:75715840-75715859 | MS.gene33912:CDS | 45.0% | |
| TGGTGCATCACTATATTGGG+AGG | - | chr1.4:75717129-75717148 | MS.gene33912:CDS | 45.0% | |
| ! | CGTGAGGCTATCACTGTTTT+AGG | + | chr1.4:75717070-75717089 | None:intergenic | 45.0% |
| ! | TCTTCCTCAAGAGGCTCTTT+TGG | - | chr1.4:75717363-75717382 | MS.gene33912:CDS | 45.0% |
| !! | CCGATTTGAGTTGACCAAAG+CGG | + | chr1.4:75715943-75715962 | None:intergenic | 45.0% |
| !!! | TGTGCCATTTTAGCAGTCCT+AGG | + | chr1.4:75715902-75715921 | None:intergenic | 45.0% |
| AAGCCAGATCTTGACGCACA+TGG | - | chr1.4:75716980-75716999 | MS.gene33912:intron | 50.0% | |
| CACAGCCTACTACTCCGATT+TGG | + | chr1.4:75715520-75715539 | None:intergenic | 50.0% | |
| CATGGTTCTCTAGGTGATGC+AGG | - | chr1.4:75716998-75717017 | MS.gene33912:intron | 50.0% | |
| CGTATACCTTCGCTGTCAGA+GGG | + | chr1.4:75715658-75715677 | None:intergenic | 50.0% | |
| CTCAGCAATATCCAGCGCAA+CGG | + | chr1.4:75715807-75715826 | None:intergenic | 50.0% | |
| CTTATTCTGGGCCGCAAGAA+CGG | + | chr1.4:75715762-75715781 | None:intergenic | 50.0% | |
| CTTGACGCACATGGTTCTCT+AGG | - | chr1.4:75716989-75717008 | MS.gene33912:intron | 50.0% | |
| GAACCATGTGCGTCAAGATC+TGG | + | chr1.4:75716986-75717005 | None:intergenic | 50.0% | |
| GGGAGCTTGTGAGGATAATG+GGG | - | chr1.4:75715841-75715860 | MS.gene33912:CDS | 50.0% | |
| GTAACATCGAAGCACGGTTG+AGG | - | chr1.4:75716405-75716424 | MS.gene33912:intron | 50.0% | |
| GTGGGAGCTTGTGAGGATAA+TGG | - | chr1.4:75715839-75715858 | MS.gene33912:CDS | 50.0% | |
| GTTCGTAGTTGGCAGCTAAG+AGG | + | chr1.4:75717045-75717064 | None:intergenic | 50.0% | |
| GTTCTCTAGGTGATGCAGGT+TGG | - | chr1.4:75717002-75717021 | MS.gene33912:intron | 50.0% | |
| TCAGCAATATCCAGCGCAAC+GGG | + | chr1.4:75715806-75715825 | None:intergenic | 50.0% | |
| TCTACTGGAAGACCCTGATG+TGG | - | chr1.4:75715691-75715710 | MS.gene33912:CDS | 50.0% | |
| TTCAATGATCCGCACCGCTT+TGG | - | chr1.4:75715926-75715945 | MS.gene33912:CDS | 50.0% | |
| ! | CCTCTGACAGCGAAGGTATA+CGG | - | chr1.4:75715656-75715675 | MS.gene33912:CDS | 50.0% |
| !! | AAGCACGGTTGAGGTGTTGT+GGG | - | chr1.4:75716414-75716433 | MS.gene33912:intron | 50.0% |
| !! | AGGTGCAAGCTTGTTGGTAG+TGG | + | chr1.4:75715731-75715750 | None:intergenic | 50.0% |
| !! | GTTAAGCACTGGTTCACGTG+AGG | + | chr1.4:75717086-75717105 | None:intergenic | 50.0% |
| !! | TAGGATTGGTCGGCCAATGA+AGG | - | chr1.4:75716242-75716261 | MS.gene33912:intron | 50.0% |
| !! | TTGAGTTGACCAAAGCGGTG+CGG | + | chr1.4:75715938-75715957 | None:intergenic | 50.0% |
| ACCGTGCTTCGATGTTACGC+AGG | + | chr1.4:75716403-75716422 | None:intergenic | 55.0% | |
| CCCTGCGTAACATCGAAGCA+CGG | - | chr1.4:75716399-75716418 | MS.gene33912:intron | 55.0% | |
| CCGTATACCTTCGCTGTCAG+AGG | + | chr1.4:75715659-75715678 | None:intergenic | 55.0% | |
| CCGTGCTTCGATGTTACGCA+GGG | + | chr1.4:75716402-75716421 | None:intergenic | 55.0% | |
| CCTTAAGTGGGCCGTTCTTG+CGG | - | chr1.4:75715748-75715767 | MS.gene33912:CDS | 55.0% | |
| CGGCAACTACGAAGCTCTAC+TGG | - | chr1.4:75715676-75715695 | MS.gene33912:CDS | 55.0% | |
| TGTCAGAGGGTAGCCATTGG+CGG | + | chr1.4:75715645-75715664 | None:intergenic | 55.0% | |
| ! | AGATGGTGGCGTTTGGGGAT+AGG | + | chr1.4:75715577-75715596 | None:intergenic | 55.0% |
| ! | GGCGTTTGGGGATAGGTTGA+TGG | + | chr1.4:75715570-75715589 | None:intergenic | 55.0% |
| !! | GAAGCACGGTTGAGGTGTTG+TGG | - | chr1.4:75716413-75716432 | MS.gene33912:intron | 55.0% |
| CCGCAAGAACGGCCCACTTA+AGG | + | chr1.4:75715751-75715770 | None:intergenic | 60.0% | |
| CGCTGTCAGAGGGTAGCCAT+TGG | + | chr1.4:75715648-75715667 | None:intergenic | 60.0% | |
| TCTTGAGAAGCCCGTTGCGC+TGG | - | chr1.4:75715793-75715812 | MS.gene33912:CDS | 60.0% | |
| TGGCTACCCTCTGACAGCGA+AGG | - | chr1.4:75715649-75715668 | MS.gene33912:CDS | 60.0% | |
| TGGTGGCTTTCGGGCTGTAC+AGG | - | chr1.4:75716898-75716917 | MS.gene33912:intron | 60.0% | |
| ! | CGGCGGCTTTGTCGTAGTTG+CGG | + | chr1.4:75715613-75715632 | None:intergenic | 60.0% |
| ! | GGCTTTGTCGTAGTTGCGGC+TGG | + | chr1.4:75715609-75715628 | None:intergenic | 60.0% |
| ATTGGCGGTGGCGAAAGCGG+CGG | + | chr1.4:75715630-75715649 | None:intergenic | 65.0% | |
| CAGAGGGTAGCCATTGGCGG+TGG | + | chr1.4:75715642-75715661 | None:intergenic | 65.0% | |
| GCCATTGGCGGTGGCGAAAG+CGG | + | chr1.4:75715633-75715652 | None:intergenic | 65.0% | |
| GTCGTAGTTGCGGCTGGCGA+CGG | + | chr1.4:75715603-75715622 | None:intergenic | 65.0% | |
| ! | ACGGCGCAGATGGTGGCGTT+TGG | + | chr1.4:75715584-75715603 | None:intergenic | 65.0% |
| ! | CGGCGCAGATGGTGGCGTTT+GGG | + | chr1.4:75715583-75715602 | None:intergenic | 65.0% |
| ! | GGCGCAGATGGTGGCGTTTG+GGG | + | chr1.4:75715582-75715601 | None:intergenic | 65.0% |
| ! | GCCGCTTTCGCCACCGCCAA+TGG | - | chr1.4:75715629-75715648 | MS.gene33912:CDS | 70.0% |
| GCTGGCGACGGCGCAGATGG+TGG | + | chr1.4:75715591-75715610 | None:intergenic | 75.0% | |
| ! | GCGGCTGGCGACGGCGCAGA+TGG | + | chr1.4:75715594-75715613 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 75715500 | 75717540 | 75715500 | ID=MS.gene33912 |
| chr1.4 | mRNA | 75715500 | 75717540 | 75715500 | ID=MS.gene33912.t1;Parent=MS.gene33912 |
| chr1.4 | exon | 75717079 | 75717540 | 75717079 | ID=MS.gene33912.t1.exon1;Parent=MS.gene33912.t1 |
| chr1.4 | CDS | 75717079 | 75717540 | 75717079 | ID=cds.MS.gene33912.t1;Parent=MS.gene33912.t1 |
| chr1.4 | exon | 75715500 | 75716120 | 75715500 | ID=MS.gene33912.t1.exon2;Parent=MS.gene33912.t1 |
| chr1.4 | CDS | 75715500 | 75716120 | 75715500 | ID=cds.MS.gene33912.t1;Parent=MS.gene33912.t1 |
| Gene Sequence |
| Protein sequence |
