Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34212.t1 | XP_013445400.1 | 94.4 | 177 | 9 | 1 | 1 | 177 | 1 | 176 | 3.10E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34212.t1 | Q9XGS0 | 61.1 | 131 | 48 | 2 | 47 | 177 | 49 | 176 | 1.6e-43 | 177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34212.t1 | A0A072TQG2 | 94.4 | 177 | 9 | 1 | 1 | 177 | 1 | 176 | 2.3e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene34212 | -0.808723 | 2.69E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene34212 | -0.810445 | 1.15E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34212.t1 | MTR_8g059015 | 94.350 | 177 | 9 | 1 | 1 | 177 | 1 | 176 | 1.72e-119 | 335 |
| MS.gene34212.t1 | MTR_2g079420 | 64.444 | 180 | 54 | 4 | 1 | 177 | 1 | 173 | 2.11e-74 | 221 |
| MS.gene34212.t1 | MTR_3g089065 | 58.621 | 145 | 59 | 1 | 33 | 177 | 30 | 173 | 6.97e-60 | 184 |
| MS.gene34212.t1 | MTR_2g079400 | 39.370 | 127 | 75 | 1 | 49 | 175 | 11 | 135 | 2.00e-33 | 115 |
| MS.gene34212.t1 | MTR_4g085880 | 45.545 | 101 | 55 | 0 | 77 | 177 | 68 | 168 | 2.99e-33 | 116 |
| MS.gene34212.t1 | MTR_2g079340 | 46.535 | 101 | 54 | 0 | 77 | 177 | 39 | 139 | 3.03e-30 | 108 |
| MS.gene34212.t1 | MTR_2g079360 | 49.057 | 106 | 53 | 1 | 70 | 174 | 42 | 147 | 4.53e-29 | 105 |
| MS.gene34212.t1 | MTR_2g079380 | 42.857 | 98 | 56 | 0 | 60 | 157 | 4 | 101 | 2.39e-23 | 93.2 |
| MS.gene34212.t1 | MTR_1g098660 | 35.052 | 97 | 63 | 0 | 78 | 174 | 66 | 162 | 5.19e-20 | 82.4 |
| MS.gene34212.t1 | MTR_1g114290 | 35.849 | 106 | 60 | 2 | 77 | 177 | 73 | 175 | 4.53e-19 | 80.1 |
| MS.gene34212.t1 | MTR_5g021180 | 37.069 | 116 | 63 | 4 | 65 | 177 | 7 | 115 | 1.82e-16 | 72.0 |
| MS.gene34212.t1 | MTR_5g084930 | 37.113 | 97 | 61 | 0 | 59 | 155 | 15 | 111 | 1.19e-15 | 73.9 |
| MS.gene34212.t1 | MTR_5g084930 | 28.571 | 133 | 88 | 4 | 33 | 161 | 116 | 245 | 1.44e-12 | 65.1 |
| MS.gene34212.t1 | MTR_7g009070 | 33.735 | 83 | 53 | 2 | 93 | 175 | 51 | 131 | 8.24e-15 | 67.8 |
| MS.gene34212.t1 | MTR_1g023140 | 34.653 | 101 | 61 | 3 | 78 | 175 | 13 | 111 | 1.19e-13 | 64.7 |
| MS.gene34212.t1 | MTR_4g094690 | 41.667 | 72 | 39 | 2 | 94 | 163 | 85 | 155 | 1.79e-13 | 65.5 |
| MS.gene34212.t1 | MTR_2g021750 | 36.082 | 97 | 62 | 0 | 59 | 155 | 15 | 111 | 4.08e-13 | 66.6 |
| MS.gene34212.t1 | MTR_3g112410 | 35.632 | 87 | 54 | 2 | 89 | 175 | 27 | 111 | 6.21e-13 | 62.4 |
| MS.gene34212.t1 | MTR_8g107460 | 38.272 | 81 | 48 | 2 | 93 | 173 | 279 | 357 | 3.86e-12 | 63.9 |
| MS.gene34212.t1 | MTR_7g073680 | 32.584 | 89 | 56 | 2 | 78 | 163 | 31 | 118 | 7.39e-11 | 57.8 |
| MS.gene34212.t1 | MTR_7g093490 | 30.208 | 96 | 62 | 3 | 73 | 163 | 74 | 169 | 8.85e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34212.t1 | AT3G15360 | 64.567 | 127 | 42 | 2 | 53 | 177 | 66 | 191 | 1.77e-57 | 179 |
| MS.gene34212.t1 | AT1G03680 | 55.405 | 148 | 61 | 2 | 30 | 177 | 37 | 179 | 4.67e-55 | 172 |
| MS.gene34212.t1 | AT4G03520 | 54.730 | 148 | 66 | 1 | 30 | 177 | 39 | 185 | 2.04e-54 | 171 |
| MS.gene34212.t1 | AT2G15570 | 47.525 | 101 | 53 | 0 | 77 | 177 | 72 | 172 | 3.31e-33 | 116 |
| MS.gene34212.t1 | AT2G15570 | 47.525 | 101 | 53 | 0 | 77 | 177 | 71 | 171 | 3.52e-33 | 116 |
| MS.gene34212.t1 | AT4G03520 | 70.423 | 71 | 21 | 0 | 107 | 177 | 1 | 71 | 2.67e-32 | 110 |
| MS.gene34212.t1 | AT1G76760 | 37.000 | 100 | 63 | 0 | 78 | 177 | 69 | 168 | 2.19e-21 | 86.3 |
| MS.gene34212.t1 | AT1G43560 | 37.000 | 100 | 63 | 0 | 78 | 177 | 64 | 163 | 3.05e-20 | 83.2 |
| MS.gene34212.t1 | AT1G50320 | 31.387 | 137 | 86 | 2 | 43 | 177 | 46 | 176 | 1.21e-17 | 76.6 |
| MS.gene34212.t1 | AT3G51030 | 43.333 | 90 | 49 | 2 | 88 | 177 | 26 | 113 | 7.44e-17 | 72.8 |
| MS.gene34212.t1 | AT1G19730 | 37.500 | 88 | 54 | 1 | 88 | 175 | 26 | 112 | 3.75e-16 | 71.2 |
| MS.gene34212.t1 | AT5G42980 | 34.091 | 88 | 56 | 2 | 88 | 175 | 25 | 110 | 1.12e-14 | 67.4 |
| MS.gene34212.t1 | AT5G39950 | 34.694 | 98 | 59 | 3 | 82 | 176 | 36 | 131 | 3.87e-14 | 66.2 |
| MS.gene34212.t1 | AT3G54960 | 33.981 | 103 | 67 | 1 | 73 | 175 | 100 | 201 | 4.09e-14 | 69.7 |
| MS.gene34212.t1 | AT4G12170 | 36.559 | 93 | 59 | 0 | 74 | 166 | 51 | 143 | 1.11e-13 | 65.5 |
| MS.gene34212.t1 | AT1G52990 | 37.647 | 85 | 52 | 1 | 93 | 177 | 230 | 313 | 1.15e-13 | 67.8 |
| MS.gene34212.t1 | AT3G54960 | 33.981 | 103 | 67 | 1 | 73 | 175 | 100 | 201 | 1.42e-13 | 68.2 |
| MS.gene34212.t1 | AT2G35010 | 31.897 | 116 | 67 | 3 | 50 | 163 | 75 | 180 | 2.21e-13 | 65.5 |
| MS.gene34212.t1 | AT2G35010 | 31.897 | 116 | 67 | 3 | 50 | 163 | 75 | 180 | 2.21e-13 | 65.5 |
| MS.gene34212.t1 | AT2G32920 | 37.805 | 82 | 51 | 0 | 74 | 155 | 32 | 113 | 5.23e-13 | 66.6 |
| MS.gene34212.t1 | AT2G32920 | 38.028 | 71 | 44 | 0 | 81 | 151 | 171 | 241 | 2.47e-12 | 64.3 |
| MS.gene34212.t1 | AT1G45145 | 34.211 | 76 | 49 | 1 | 88 | 163 | 25 | 99 | 9.22e-13 | 62.0 |
| MS.gene34212.t1 | AT1G04980 | 37.179 | 78 | 49 | 0 | 74 | 151 | 34 | 111 | 1.13e-12 | 65.5 |
| MS.gene34212.t1 | AT1G04980 | 34.667 | 75 | 49 | 0 | 77 | 151 | 172 | 246 | 2.44e-12 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGCCTGGGCTTGGGGTT+GGG | 0.246250 | 8.4:-48145125 | None:intergenic |
| GAGAAAATGGGCCTGGGCTT+GGG | 0.247517 | 8.4:-48145131 | None:intergenic |
| GGGTCTGAGGCCCACGTAAC+GGG | 0.265540 | 8.4:-48145105 | None:intergenic |
| TGGGCTTGGGGTTGGGTCTG+AGG | 0.271631 | 8.4:-48145118 | None:intergenic |
| ATTGCTAGTTCATCAATTAT+AGG | 0.294076 | 8.4:-48147667 | None:intergenic |
| AGTGGAGTGAGTGGAGAAAA+TGG | 0.296510 | 8.4:-48145144 | None:intergenic |
| GGAGAAAATGGGCCTGGGCT+TGG | 0.312075 | 8.4:-48145132 | None:intergenic |
| CTGCTATCACCGATGAAAAT+TGG | 0.334944 | 8.4:+48147563 | MS.gene34212:CDS |
| AATGGGCCTGGGCTTGGGGT+TGG | 0.342761 | 8.4:-48145126 | None:intergenic |
| CGAATCTGAATCTACCGTTT+TGG | 0.343464 | 8.4:+48147600 | MS.gene34212:CDS |
| GAACTAGCAATACAATATAC+TGG | 0.398934 | 8.4:+48147679 | MS.gene34212:CDS |
| GTGAGTGGAGAAAATGGGCC+TGG | 0.425797 | 8.4:-48145138 | None:intergenic |
| CCTTCAACTGCTACCAGGTA+TGG | 0.432419 | 8.4:+48147739 | MS.gene34212:CDS |
| AGAAAATGGGCCTGGGCTTG+GGG | 0.435068 | 8.4:-48145130 | None:intergenic |
| ACGCGTAGTGTGTGAGGCTC+AGG | 0.442187 | 8.4:+48145193 | MS.gene34212:CDS |
| TGGGTCTGAGGCCCACGTAA+CGG | 0.458501 | 8.4:-48145106 | None:intergenic |
| CCATACCTGGTAGCAGTTGA+AGG | 0.461513 | 8.4:-48147739 | None:intergenic |
| TATAGGTGTGATCATTCTGC+AGG | 0.482806 | 8.4:-48147650 | None:intergenic |
| GCTGGATGTCAGTGTTGACT+TGG | 0.483305 | 8.4:-48147833 | None:intergenic |
| TCAGACCCAACCCCAAGCCC+AGG | 0.499056 | 8.4:+48145120 | MS.gene34212:CDS |
| TGGTTGAATTCTGGGCTCCA+TGG | 0.502481 | 8.4:+48147620 | MS.gene34212:CDS |
| CAGGATACCGCTGTTGATGA+TGG | 0.503313 | 8.4:+48145212 | MS.gene34212:CDS |
| GGTCTGAGGCCCACGTAACG+GGG | 0.514866 | 8.4:-48145104 | None:intergenic |
| GGCAGAAGTGCGAGGGATGA+CGG | 0.516316 | 8.4:-48145039 | None:intergenic |
| CTTTGAAGATCATAACTGTC+GGG | 0.521915 | 8.4:-48147774 | None:intergenic |
| GTGGAGTGAGTGGAGAAAAT+GGG | 0.524624 | 8.4:-48145143 | None:intergenic |
| TGAGTGGAGAAAATGGGCCT+GGG | 0.549222 | 8.4:-48145137 | None:intergenic |
| AGCCCAGAATTCAACCAAAA+CGG | 0.555553 | 8.4:-48147614 | None:intergenic |
| GAGTGCAACGACGGGAGTGA+TGG | 0.559427 | 8.4:-48145063 | None:intergenic |
| AGAGTCCTTCAACTGCTACC+AGG | 0.564155 | 8.4:+48147734 | MS.gene34212:CDS |
| TGCAACGACGGGAGTGATGG+CGG | 0.564235 | 8.4:-48145060 | None:intergenic |
| AGTGCGAGGGATGACGGCGA+TGG | 0.570677 | 8.4:-48145033 | None:intergenic |
| GAACTCCGGAGTGCAACGAC+GGG | 0.574052 | 8.4:-48145071 | None:intergenic |
| GATTCGATGATGGTGGCCAT+CGG | 0.579134 | 8.4:-48145011 | None:intergenic |
| TCTTGAAGCAGTGGAGTGAG+TGG | 0.581599 | 8.4:-48145153 | None:intergenic |
| CAATTCACGCGTAGTGTGTG+AGG | 0.589920 | 8.4:+48145187 | MS.gene34212:CDS |
| GACGGCGATGGATTCGATGA+TGG | 0.594939 | 8.4:-48145021 | None:intergenic |
| GCTAGCAATTCTTGAAGCAG+TGG | 0.597540 | 8.4:-48145162 | None:intergenic |
| TCTTTGAAGATCATAACTGT+CGG | 0.600887 | 8.4:-48147775 | None:intergenic |
| GAATTCTGGGCTCCATGGTG+TGG | 0.602377 | 8.4:+48147625 | MS.gene34212:CDS |
| CTGGATGTCAGTGTTGACTT+GGG | 0.602537 | 8.4:-48147832 | None:intergenic |
| AGAACTCCGGAGTGCAACGA+CGG | 0.606543 | 8.4:-48145072 | None:intergenic |
| AGCAGTTGAAGGACTCTCAT+CGG | 0.612464 | 8.4:-48147728 | None:intergenic |
| TGATGGCGGCAGAAGTGCGA+GGG | 0.626992 | 8.4:-48145046 | None:intergenic |
| TCACTCCCGTCGTTGCACTC+CGG | 0.627976 | 8.4:+48145066 | MS.gene34212:CDS |
| GTGATGGCGGCAGAAGTGCG+AGG | 0.633845 | 8.4:-48145047 | None:intergenic |
| CACACACTACGCGTGAATTG+CGG | 0.640205 | 8.4:-48145184 | None:intergenic |
| ATTCTGCAGGGACCACACCA+TGG | 0.653948 | 8.4:-48147637 | None:intergenic |
| GATACTTCGAATTCCATACC+TGG | 0.659732 | 8.4:-48147752 | None:intergenic |
| GTCTGAGGCCCACGTAACGG+GGG | 0.660386 | 8.4:-48145103 | None:intergenic |
| ACAGTTATGATCTTCAAAGA+CGG | 0.663065 | 8.4:+48147778 | MS.gene34212:CDS |
| ATAGGTGTGATCATTCTGCA+GGG | 0.663526 | 8.4:-48147649 | None:intergenic |
| GGCGATGGATTCGATGATGG+TGG | 0.698121 | 8.4:-48145018 | None:intergenic |
| AAACTGACCATCATCAACAG+CGG | 0.762514 | 8.4:-48145219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATTTCTATAATTTTTA+AGG | - | chr8.4:48145302-48145321 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGAATAAGA+GGG | + | chr8.4:48146162-48146181 | MS.gene34212:intron | 10.0% |
| !!! | TTTTTTTTTTTTTGAATAAG+AGG | + | chr8.4:48146161-48146180 | MS.gene34212:intron | 10.0% |
| !!! | ATTATATTGAAATATTGACT+GGG | + | chr8.4:48147283-48147302 | MS.gene34212:intron | 15.0% |
| !! | AATCAAATAAGCAAAAGTTA+TGG | - | chr8.4:48147027-48147046 | None:intergenic | 20.0% |
| !! | ATAATGGTTGAATTATATGA+TGG | - | chr8.4:48146646-48146665 | None:intergenic | 20.0% |
| !! | CATTATATTGAAATATTGAC+TGG | + | chr8.4:48147282-48147301 | MS.gene34212:intron | 20.0% |
| !! | TAGAAATTCATCTTATAGAA+AGG | + | chr8.4:48146787-48146806 | MS.gene34212:intron | 20.0% |
| !! | TTTGATAGACATATACTAAT+TGG | + | chr8.4:48147504-48147523 | MS.gene34212:intron | 20.0% |
| !!! | AAATTGGCTTTAAAGTTAAA+AGG | - | chr8.4:48146699-48146718 | None:intergenic | 20.0% |
| !!! | ATCCAAATGTTAATTTTCTA+CGG | + | chr8.4:48147462-48147481 | MS.gene34212:intron | 20.0% |
| !!! | TATATATATGGAAAGTGTTA+TGG | - | chr8.4:48147218-48147237 | None:intergenic | 20.0% |
| !!! | TTATAAGAATTTTTCTATGC+TGG | - | chr8.4:48147854-48147873 | None:intergenic | 20.0% |
| !!! | TTTAACTTTAAAGCCAATTT+GGG | + | chr8.4:48146699-48146718 | MS.gene34212:intron | 20.0% |
| !!! | TTTTAACTTTAAAGCCAATT+TGG | + | chr8.4:48146698-48146717 | MS.gene34212:intron | 20.0% |
| ! | AAAAAGATGATAGGACATTT+AGG | + | chr8.4:48147324-48147343 | MS.gene34212:intron | 25.0% |
| ! | AAAAGACTTTAAATTCTCTC+AGG | - | chr8.4:48146067-48146086 | None:intergenic | 25.0% |
| ! | AAAGACTTTAAATTCTCTCA+GGG | - | chr8.4:48146066-48146085 | None:intergenic | 25.0% |
| ! | AAATCTTTCCTTGATCAATT+TGG | + | chr8.4:48145462-48145481 | MS.gene34212:intron | 25.0% |
| ! | AAGAATTGTAAAGTAAAGGT+GGG | - | chr8.4:48145820-48145839 | None:intergenic | 25.0% |
| ! | AAGTTCATTAAATCAATGCA+AGG | - | chr8.4:48147052-48147071 | None:intergenic | 25.0% |
| ! | AATAAACGCAACATTGAAAA+TGG | - | chr8.4:48146921-48146940 | None:intergenic | 25.0% |
| ! | ACGAGAAAGTTAAAAGTAAA+AGG | - | chr8.4:48146497-48146516 | None:intergenic | 25.0% |
| ! | ATATCAAAAAGGTGAAAACA+TGG | + | chr8.4:48146098-48146117 | MS.gene34212:intron | 25.0% |
| ! | ATCTTATAGAAAGGATTTGT+TGG | + | chr8.4:48146796-48146815 | MS.gene34212:intron | 25.0% |
| ! | ATTGCTAGTTCATCAATTAT+AGG | - | chr8.4:48147670-48147689 | None:intergenic | 25.0% |
| ! | ATTTCAGCATTATTCATGAT+TGG | + | chr8.4:48147420-48147439 | MS.gene34212:intron | 25.0% |
| ! | CAACTACACAAGTATATATA+TGG | - | chr8.4:48147230-48147249 | None:intergenic | 25.0% |
| ! | CGAGAAAGTTAAAAGTAAAA+GGG | - | chr8.4:48146496-48146515 | None:intergenic | 25.0% |
| ! | CTATTGCAATGAAAATTAAG+AGG | - | chr8.4:48145742-48145761 | None:intergenic | 25.0% |
| ! | TGATCAAGTTTCAATAACAT+TGG | + | chr8.4:48146940-48146959 | MS.gene34212:intron | 25.0% |
| ! | TGATGCAATTATTGAAGATA+TGG | + | chr8.4:48146407-48146426 | MS.gene34212:intron | 25.0% |
| ! | TGTTCACAATTATCAATACA+AGG | + | chr8.4:48146526-48146545 | MS.gene34212:intron | 25.0% |
| ! | TGTTGCAAAATAAAATGAAG+TGG | + | chr8.4:48146203-48146222 | MS.gene34212:intron | 25.0% |
| ! | TTAAGGTAGATGATATTCTT+TGG | - | chr8.4:48145285-48145304 | None:intergenic | 25.0% |
| ! | TTACACAACATTGATCAATT+TGG | - | chr8.4:48146344-48146363 | None:intergenic | 25.0% |
| ! | TTCCAAGAATTGTAAAGTAA+AGG | - | chr8.4:48145824-48145843 | None:intergenic | 25.0% |
| !! | AAATGTCCTATCATCTTTTT+GGG | - | chr8.4:48147324-48147343 | None:intergenic | 25.0% |
| !! | AATTGATCAAGGAAAGATTT+TGG | - | chr8.4:48145462-48145481 | None:intergenic | 25.0% |
| !! | ATTGATCAAGGAAAGATTTT+GGG | - | chr8.4:48145461-48145480 | None:intergenic | 25.0% |
| !! | TAAATGTCCTATCATCTTTT+TGG | - | chr8.4:48147325-48147344 | None:intergenic | 25.0% |
| !! | TGATCACAGATTAGTTATAA+TGG | - | chr8.4:48146662-48146681 | None:intergenic | 25.0% |
| !! | TTCCATTTTCATCAACAAAA+TGG | - | chr8.4:48146127-48146146 | None:intergenic | 25.0% |
| !! | TTTCTAGTCAATCATTAGAT+TGG | - | chr8.4:48146773-48146792 | None:intergenic | 25.0% |
| !!! | ATATTGATAATGCTAGAGAT+TGG | + | chr8.4:48146382-48146401 | MS.gene34212:intron | 25.0% |
| AACTTGACTAATGACTACTA+TGG | - | chr8.4:48146002-48146021 | None:intergenic | 30.0% | |
| AAGTGATTCAAACTAACAGA+AGG | - | chr8.4:48145489-48145508 | None:intergenic | 30.0% | |
| ACAGTTATGATCTTCAAAGA+CGG | + | chr8.4:48147778-48147797 | MS.gene34212:CDS | 30.0% | |
| ACTTAACAAAGTTTGCATGT+TGG | + | chr8.4:48145505-48145524 | MS.gene34212:intron | 30.0% | |
| CAAGAATTGTAAAGTAAAGG+TGG | - | chr8.4:48145821-48145840 | None:intergenic | 30.0% | |
| CAATAACAATACAGTGACAT+TGG | + | chr8.4:48147087-48147106 | MS.gene34212:intron | 30.0% | |
| CACCTTTACTTTACAATTCT+TGG | + | chr8.4:48145819-48145838 | MS.gene34212:intron | 30.0% | |
| CCTAACTCAACATATCAAAA+AGG | + | chr8.4:48146087-48146106 | MS.gene34212:intron | 30.0% | |
| GAACTAGCAATACAATATAC+TGG | + | chr8.4:48147679-48147698 | MS.gene34212:CDS | 30.0% | |
| GAGAAAAAAGACACAGTTAT+TGG | + | chr8.4:48147802-48147821 | MS.gene34212:CDS | 30.0% | |
| GATGAAAATGGAATATGAGA+GGG | + | chr8.4:48146134-48146153 | MS.gene34212:intron | 30.0% | |
| GTCCGTAGAAAATTAACATT+TGG | - | chr8.4:48147467-48147486 | None:intergenic | 30.0% | |
| TAAGCAAAAGTTATGGATCA+TGG | - | chr8.4:48147020-48147039 | None:intergenic | 30.0% | |
| TCAGTTAGCACAGTAATATA+TGG | - | chr8.4:48147132-48147151 | None:intergenic | 30.0% | |
| TCCATTATCCATGGATAAAA+TGG | - | chr8.4:48146570-48146589 | None:intergenic | 30.0% | |
| TGATGAAAATGGAATATGAG+AGG | + | chr8.4:48146133-48146152 | MS.gene34212:intron | 30.0% | |
| TTATTGAAGATATGGTTAGC+TGG | + | chr8.4:48146415-48146434 | MS.gene34212:intron | 30.0% | |
| ! | AAGTGATTGCCAATTTTCAT+CGG | - | chr8.4:48147575-48147594 | None:intergenic | 30.0% |
| ! | AATGTCCTATCATCTTTTTG+GGG | - | chr8.4:48147323-48147342 | None:intergenic | 30.0% |
| ! | ACCATTTTATCCATGGATAA+TGG | + | chr8.4:48146566-48146585 | MS.gene34212:intron | 30.0% |
| ! | ATGCATTGATGTATTGCATT+TGG | + | chr8.4:48146890-48146909 | MS.gene34212:intron | 30.0% |
| ! | CCTTTTTGATATGTTGAGTT+AGG | - | chr8.4:48146090-48146109 | None:intergenic | 30.0% |
| ! | TCACTGATTGATGTTAAACT+AGG | + | chr8.4:48147347-48147366 | MS.gene34212:intron | 30.0% |
| ! | TCTTTGAAGATCATAACTGT+CGG | - | chr8.4:48147778-48147797 | None:intergenic | 30.0% |
| ! | TGCATTGATGTATTGCATTT+GGG | + | chr8.4:48146891-48146910 | MS.gene34212:intron | 30.0% |
| !! | CTTTTTCACCATTTTATCCA+TGG | + | chr8.4:48146559-48146578 | MS.gene34212:intron | 30.0% |
| !! | GACCATTTTGTTGATGAAAA+TGG | + | chr8.4:48146122-48146141 | MS.gene34212:intron | 30.0% |
| !!! | AAGAGGCATTTTAATCATCT+GGG | + | chr8.4:48146030-48146049 | MS.gene34212:intron | 30.0% |
| !!! | CTTGTTTTAGTCACTTAAGA+TGG | - | chr8.4:48146313-48146332 | None:intergenic | 30.0% |
| !!! | TAAGAGGCATTTTAATCATC+TGG | + | chr8.4:48146029-48146048 | MS.gene34212:intron | 30.0% |
| AAACATGCAAATGTCACAGA+AGG | + | chr8.4:48145535-48145554 | MS.gene34212:intron | 35.0% | |
| AAGTGACTAAAACAAGCAGA+TGG | + | chr8.4:48146317-48146336 | MS.gene34212:intron | 35.0% | |
| AATTAAGAGGTCTCAACGTA+AGG | - | chr8.4:48145729-48145748 | None:intergenic | 35.0% | |
| AATTGTAAAGTAAAGGTGGG+TGG | - | chr8.4:48145817-48145836 | None:intergenic | 35.0% | |
| ACACAAAAGTAAAGTTGTGG+AGG | + | chr8.4:48145564-48145583 | MS.gene34212:intron | 35.0% | |
| ACTAAGCACAAAACTCAAAG+TGG | - | chr8.4:48147185-48147204 | None:intergenic | 35.0% | |
| GAGTATTAGTTACTAGCTAG+TGG | + | chr8.4:48146445-48146464 | MS.gene34212:intron | 35.0% | |
| GTACATCAAAGCCTATCTAT+AGG | - | chr8.4:48146474-48146493 | None:intergenic | 35.0% | |
| TACCTCAAAAAGCAGTACAA+TGG | - | chr8.4:48147158-48147177 | None:intergenic | 35.0% | |
| TCATTGCAATAGCTTGACAA+CGG | + | chr8.4:48145750-48145769 | MS.gene34212:intron | 35.0% | |
| TCCACACAAAAGTAAAGTTG+TGG | + | chr8.4:48145561-48145580 | MS.gene34212:intron | 35.0% | |
| TGAATAAGAGGGAAACTGAT+GGG | + | chr8.4:48146173-48146192 | MS.gene34212:intron | 35.0% | |
| TTGAATAAGAGGGAAACTGA+TGG | + | chr8.4:48146172-48146191 | MS.gene34212:intron | 35.0% | |
| ! | AACACTGATGTTTAGAGTTG+GGG | + | chr8.4:48145597-48145616 | MS.gene34212:intron | 35.0% |
| ! | ACAATTGCTGTTGAGAAACA+TGG | - | chr8.4:48146595-48146614 | None:intergenic | 35.0% |
| ! | AGTCAAGTTACGCTTTTAAG+AGG | + | chr8.4:48146013-48146032 | MS.gene34212:intron | 35.0% |
| ! | CAATCTTGATAACCTCAACA+TGG | + | chr8.4:48146858-48146877 | MS.gene34212:intron | 35.0% |
| ! | CTTTGAAGATCATAACTGTC+GGG | - | chr8.4:48147777-48147796 | None:intergenic | 35.0% |
| ! | GAACACTGATGTTTAGAGTT+GGG | + | chr8.4:48145596-48145615 | MS.gene34212:intron | 35.0% |
| ! | GATATGGTTAGCTGGTTATT+AGG | + | chr8.4:48146423-48146442 | MS.gene34212:intron | 35.0% |
| ! | TGAACACTGATGTTTAGAGT+TGG | + | chr8.4:48145595-48145614 | MS.gene34212:intron | 35.0% |
| ! | TTGGTAGTATCAAACTCAGA+TGG | + | chr8.4:48147439-48147458 | MS.gene34212:intron | 35.0% |
| !! | CAATTTGTATCAGTGGATTG+TGG | + | chr8.4:48145623-48145642 | MS.gene34212:intron | 35.0% |
| !! | GAGTTTTGTGCTTAGTTAGA+AGG | + | chr8.4:48147189-48147208 | MS.gene34212:intron | 35.0% |
| !! | TCCACAACTTTACTTTTGTG+TGG | - | chr8.4:48145565-48145584 | None:intergenic | 35.0% |
| !!! | ATCTTTTTGGGGTTGCAAAT+GGG | - | chr8.4:48147312-48147331 | None:intergenic | 35.0% |
| !!! | CGTTCTTTGTTTGTTTTGCA+AGG | - | chr8.4:48145922-48145941 | None:intergenic | 35.0% |
| !!! | TACCGTTTTGGTTGAATTCT+GGG | + | chr8.4:48147612-48147631 | MS.gene34212:CDS | 35.0% |
| AAACTGACCATCATCAACAG+CGG | - | chr8.4:48145222-48145241 | None:intergenic | 40.0% | |
| AACATGGCATCCATTATCCA+TGG | - | chr8.4:48146579-48146598 | None:intergenic | 40.0% | |
| AACGTAAGGAAACAGCTTCA+TGG | - | chr8.4:48145715-48145734 | None:intergenic | 40.0% | |
| AGCCCAGAATTCAACCAAAA+CGG | - | chr8.4:48147617-48147636 | None:intergenic | 40.0% | |
| AGGAAACAGCTTCATGGATT+TGG | - | chr8.4:48145709-48145728 | None:intergenic | 40.0% | |
| ATAGGTGTGATCATTCTGCA+GGG | - | chr8.4:48147652-48147671 | None:intergenic | 40.0% | |
| CAGAAGGACCAAATTGATCA+AGG | - | chr8.4:48145473-48145492 | None:intergenic | 40.0% | |
| CATCAATCAAGTCCATGTTG+AGG | - | chr8.4:48146873-48146892 | None:intergenic | 40.0% | |
| CCAGAACTTCGTAATTCTCT+AGG | + | chr8.4:48145873-48145892 | MS.gene34212:intron | 40.0% | |
| CCTAGAGAATTACGAAGTTC+TGG | - | chr8.4:48145876-48145895 | None:intergenic | 40.0% | |
| CTGCTATCACCGATGAAAAT+TGG | + | chr8.4:48147563-48147582 | MS.gene34212:CDS | 40.0% | |
| GATACTTCGAATTCCATACC+TGG | - | chr8.4:48147755-48147774 | None:intergenic | 40.0% | |
| TAAAGCCAATTTGGGAGAGT+AGG | + | chr8.4:48146707-48146726 | MS.gene34212:intron | 40.0% | |
| TATAGGTGTGATCATTCTGC+AGG | - | chr8.4:48147653-48147672 | None:intergenic | 40.0% | |
| TGCAACCCCAAAAAGATGAT+AGG | + | chr8.4:48147315-48147334 | MS.gene34212:intron | 40.0% | |
| ! | ACACTGATGTTTAGAGTTGG+GGG | + | chr8.4:48145598-48145617 | MS.gene34212:intron | 40.0% |
| ! | AGAGAATTACGAAGTTCTGG+AGG | - | chr8.4:48145873-48145892 | None:intergenic | 40.0% |
| ! | CAATTTTCATCGGTGATAGC+AGG | - | chr8.4:48147565-48147584 | None:intergenic | 40.0% |
| ! | CGAATCTGAATCTACCGTTT+TGG | + | chr8.4:48147600-48147619 | MS.gene34212:CDS | 40.0% |
| !!! | CATCTTTTTGGGGTTGCAAA+TGG | - | chr8.4:48147313-48147332 | None:intergenic | 40.0% |
| !!! | CTACCGTTTTGGTTGAATTC+TGG | + | chr8.4:48147611-48147630 | MS.gene34212:CDS | 40.0% |
| !!! | GTCCATTGTACTGCTTTTTG+AGG | + | chr8.4:48147153-48147172 | MS.gene34212:intron | 40.0% |
| ACGCTTACTGAGATTCTCGA+GGG | - | chr8.4:48145848-48145867 | None:intergenic | 45.0% | |
| AGCAGTTGAAGGACTCTCAT+CGG | - | chr8.4:48147731-48147750 | None:intergenic | 45.0% | |
| AGTGGAGTGAGTGGAGAAAA+TGG | - | chr8.4:48145147-48145166 | None:intergenic | 45.0% | |
| CAGTTCCTACTCTCCCAAAT+TGG | - | chr8.4:48146715-48146734 | None:intergenic | 45.0% | |
| GCTAGCAATTCTTGAAGCAG+TGG | - | chr8.4:48145165-48145184 | None:intergenic | 45.0% | |
| GTGGAGTGAGTGGAGAAAAT+GGG | - | chr8.4:48145146-48145165 | None:intergenic | 45.0% | |
| ! | GCTAGTGGATGCCTATAGAT+AGG | + | chr8.4:48146460-48146479 | MS.gene34212:intron | 45.0% |
| ! | GGGGGTACAATTTGTATCAG+TGG | + | chr8.4:48145616-48145635 | MS.gene34212:intron | 45.0% |
| !! | CTGGATGTCAGTGTTGACTT+GGG | - | chr8.4:48147835-48147854 | None:intergenic | 45.0% |
| !! | GGGAGAGTAGGAACTGATTT+TGG | + | chr8.4:48146719-48146738 | MS.gene34212:intron | 45.0% |
| !!! | AATTTGAATAATTTTTATAA+CGG | + | chr8.4:48147527-48147546 | MS.gene34212:intron | 5.0% |
| AGAGTCCTTCAACTGCTACC+AGG | + | chr8.4:48147734-48147753 | MS.gene34212:CDS | 50.0% | |
| CAATTCACGCGTAGTGTGTG+AGG | + | chr8.4:48145187-48145206 | MS.gene34212:CDS | 50.0% | |
| CACACACTACGCGTGAATTG+CGG | - | chr8.4:48145187-48145206 | None:intergenic | 50.0% | |
| CAGTCTCGCAATAGTCAACG+TGG | + | chr8.4:48146270-48146289 | MS.gene34212:intron | 50.0% | |
| CCATACCTGGTAGCAGTTGA+AGG | - | chr8.4:48147742-48147761 | None:intergenic | 50.0% | |
| CCTTCAACTGCTACCAGGTA+TGG | + | chr8.4:48147739-48147758 | MS.gene34212:CDS | 50.0% | |
| CGCTTACTGAGATTCTCGAG+GGG | - | chr8.4:48145847-48145866 | None:intergenic | 50.0% | |
| GACGCTTACTGAGATTCTCG+AGG | - | chr8.4:48145849-48145868 | None:intergenic | 50.0% | |
| TCTTGAAGCAGTGGAGTGAG+TGG | - | chr8.4:48145156-48145175 | None:intergenic | 50.0% | |
| TGAGTGGAGAAAATGGGCCT+GGG | - | chr8.4:48145140-48145159 | None:intergenic | 50.0% | |
| TGGTTGAATTCTGGGCTCCA+TGG | + | chr8.4:48147620-48147639 | MS.gene34212:CDS | 50.0% | |
| ! | AACGGTGTCAGCAGTGGTTT+GGG | + | chr8.4:48145768-48145787 | MS.gene34212:intron | 50.0% |
| ! | CAGGATACCGCTGTTGATGA+TGG | + | chr8.4:48145212-48145231 | MS.gene34212:CDS | 50.0% |
| !! | GCTGGATGTCAGTGTTGACT+TGG | - | chr8.4:48147836-48147855 | None:intergenic | 50.0% |
| AGAAAATGGGCCTGGGCTTG+GGG | - | chr8.4:48145133-48145152 | None:intergenic | 55.0% | |
| AGAACTCCGGAGTGCAACGA+CGG | - | chr8.4:48145075-48145094 | None:intergenic | 55.0% | |
| ATTCTGCAGGGACCACACCA+TGG | - | chr8.4:48147640-48147659 | None:intergenic | 55.0% | |
| GAATTCTGGGCTCCATGGTG+TGG | + | chr8.4:48147625-48147644 | MS.gene34212:CDS | 55.0% | |
| GAGAAAATGGGCCTGGGCTT+GGG | - | chr8.4:48145134-48145153 | None:intergenic | 55.0% | |
| GTGAGTGGAGAAAATGGGCC+TGG | - | chr8.4:48145141-48145160 | None:intergenic | 55.0% | |
| ! | CAACGGTGTCAGCAGTGGTT+TGG | + | chr8.4:48145767-48145786 | MS.gene34212:intron | 55.0% |
| ! | CTTGACAACGGTGTCAGCAG+TGG | + | chr8.4:48145762-48145781 | MS.gene34212:intron | 55.0% |
| ! | GACGGCGATGGATTCGATGA+TGG | - | chr8.4:48145024-48145043 | None:intergenic | 55.0% |
| ! | GGCGATGGATTCGATGATGG+TGG | - | chr8.4:48145021-48145040 | None:intergenic | 55.0% |
| ACGCGTAGTGTGTGAGGCTC+AGG | + | chr8.4:48145193-48145212 | MS.gene34212:CDS | 60.0% | |
| CCCAAGTTCCCCCGTTACGT+GGG | + | chr8.4:48145095-48145114 | MS.gene34212:CDS | 60.0% | |
| GAACTCCGGAGTGCAACGAC+GGG | - | chr8.4:48145074-48145093 | None:intergenic | 60.0% | |
| GAGTGCAACGACGGGAGTGA+TGG | - | chr8.4:48145066-48145085 | None:intergenic | 60.0% | |
| GGAGAAAATGGGCCTGGGCT+TGG | - | chr8.4:48145135-48145154 | None:intergenic | 60.0% | |
| GGGGGAACTTGGGAGAACTC+CGG | - | chr8.4:48145088-48145107 | None:intergenic | 60.0% | |
| TCACTCCCGTCGTTGCACTC+CGG | + | chr8.4:48145066-48145085 | MS.gene34212:CDS | 60.0% | |
| TCCCAAGTTCCCCCGTTACG+TGG | + | chr8.4:48145094-48145113 | MS.gene34212:CDS | 60.0% | |
| TGCAACGACGGGAGTGATGG+CGG | - | chr8.4:48145063-48145082 | None:intergenic | 60.0% | |
| ! | CCCACGTAACGGGGGAACTT+GGG | - | chr8.4:48145098-48145117 | None:intergenic | 60.0% |
| ! | GGCAGAAGTGCGAGGGATGA+CGG | - | chr8.4:48145042-48145061 | None:intergenic | 60.0% |
| ! | TGGGTCTGAGGCCCACGTAA+CGG | - | chr8.4:48145109-48145128 | None:intergenic | 60.0% |
| !! | TGATGGCGGCAGAAGTGCGA+GGG | - | chr8.4:48145049-48145068 | None:intergenic | 60.0% |
| AATGGGCCTGGGCTTGGGGT+TGG | - | chr8.4:48145129-48145148 | None:intergenic | 65.0% | |
| ATGGGCCTGGGCTTGGGGTT+GGG | - | chr8.4:48145128-48145147 | None:intergenic | 65.0% | |
| TCAGACCCAACCCCAAGCCC+AGG | + | chr8.4:48145120-48145139 | MS.gene34212:CDS | 65.0% | |
| TGGGCTTGGGGTTGGGTCTG+AGG | - | chr8.4:48145121-48145140 | None:intergenic | 65.0% | |
| ! | AGTGCGAGGGATGACGGCGA+TGG | - | chr8.4:48145036-48145055 | None:intergenic | 65.0% |
| ! | GCCCACGTAACGGGGGAACT+TGG | - | chr8.4:48145099-48145118 | None:intergenic | 65.0% |
| ! | GGGTCTGAGGCCCACGTAAC+GGG | - | chr8.4:48145108-48145127 | None:intergenic | 65.0% |
| ! | GGTCTGAGGCCCACGTAACG+GGG | - | chr8.4:48145107-48145126 | None:intergenic | 65.0% |
| ! | GTCTGAGGCCCACGTAACGG+GGG | - | chr8.4:48145106-48145125 | None:intergenic | 65.0% |
| !! | GTGATGGCGGCAGAAGTGCG+AGG | - | chr8.4:48145050-48145069 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 48145014 | 48147873 | 48145014 | ID=MS.gene34212 |
| chr8.4 | mRNA | 48145014 | 48147873 | 48145014 | ID=MS.gene34212.t1;Parent=MS.gene34212 |
| chr8.4 | exon | 48145014 | 48145233 | 48145014 | ID=MS.gene34212.t1.exon1;Parent=MS.gene34212.t1 |
| chr8.4 | CDS | 48145014 | 48145233 | 48145014 | ID=cds.MS.gene34212.t1;Parent=MS.gene34212.t1 |
| chr8.4 | exon | 48147560 | 48147873 | 48147560 | ID=MS.gene34212.t1.exon2;Parent=MS.gene34212.t1 |
| chr8.4 | CDS | 48147560 | 48147873 | 48147560 | ID=cds.MS.gene34212.t1;Parent=MS.gene34212.t1 |
| Gene Sequence |
| Protein sequence |
