Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34278.t1 | PNY10486.1 | 83.8 | 309 | 11 | 1 | 126 | 395 | 136 | 444 | 5.20E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34278.t1 | Q9FPT1 | 76.4 | 297 | 31 | 1 | 138 | 395 | 137 | 433 | 6.5e-130 | 465.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34278.t1 | A0A2K3P5C2 | 83.8 | 309 | 11 | 1 | 126 | 395 | 136 | 444 | 3.8e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene34278 | 0.822549 | 2.23E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene34278 | 0.802283 | 6.04E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene34278 | 0.803299 | 3.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34278.t1 | MTR_1g041240 | 86.532 | 297 | 1 | 1 | 138 | 395 | 138 | 434 | 3.47e-178 | 530 |
| MS.gene34278.t1 | MTR_1g041240 | 86.532 | 297 | 1 | 1 | 138 | 395 | 139 | 435 | 3.55e-178 | 530 |
| MS.gene34278.t1 | MTR_1g041240 | 86.532 | 297 | 1 | 1 | 138 | 395 | 137 | 433 | 3.84e-178 | 530 |
| MS.gene34278.t1 | MTR_3g079840 | 78.451 | 297 | 25 | 1 | 138 | 395 | 137 | 433 | 1.54e-158 | 479 |
| MS.gene34278.t1 | MTR_3g079840 | 78.451 | 297 | 25 | 1 | 138 | 395 | 138 | 434 | 1.59e-158 | 479 |
| MS.gene34278.t1 | MTR_5g086700 | 78.114 | 297 | 26 | 1 | 138 | 395 | 142 | 438 | 2.53e-158 | 479 |
| MS.gene34278.t1 | MTR_5g086700 | 78.114 | 297 | 26 | 1 | 138 | 395 | 142 | 438 | 2.55e-158 | 479 |
| MS.gene34278.t1 | MTR_6g044600 | 76.190 | 105 | 15 | 1 | 396 | 490 | 598 | 702 | 3.87e-39 | 152 |
| MS.gene34278.t1 | MTR_6g034375 | 51.562 | 128 | 29 | 4 | 396 | 490 | 569 | 696 | 3.27e-22 | 100 |
| MS.gene34278.t1 | MTR_6g034375 | 51.562 | 128 | 29 | 4 | 396 | 490 | 514 | 641 | 3.97e-22 | 100 |
| MS.gene34278.t1 | MTR_6g044110 | 62.857 | 70 | 26 | 0 | 419 | 488 | 474 | 543 | 1.98e-19 | 92.0 |
| MS.gene34278.t1 | MTR_2g006220 | 40.458 | 131 | 47 | 1 | 396 | 495 | 84 | 214 | 1.21e-18 | 88.2 |
| MS.gene34278.t1 | MTR_3g108660 | 30.088 | 226 | 110 | 6 | 201 | 381 | 108 | 330 | 1.75e-15 | 80.1 |
| MS.gene34278.t1 | MTR_3g108660 | 30.088 | 226 | 110 | 6 | 201 | 381 | 108 | 330 | 1.76e-15 | 80.1 |
| MS.gene34278.t1 | MTR_1g010040 | 28.761 | 226 | 113 | 6 | 201 | 381 | 108 | 330 | 7.57e-14 | 74.7 |
| MS.gene34278.t1 | MTR_1g010040 | 28.761 | 226 | 113 | 6 | 201 | 381 | 108 | 330 | 8.04e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34278.t1 | AT5G06600 | 76.431 | 297 | 31 | 1 | 138 | 395 | 137 | 433 | 8.17e-157 | 471 |
| MS.gene34278.t1 | AT5G06600 | 76.431 | 297 | 31 | 1 | 138 | 395 | 136 | 432 | 1.24e-155 | 472 |
| MS.gene34278.t1 | AT5G06600 | 76.431 | 297 | 31 | 1 | 138 | 395 | 137 | 433 | 1.53e-155 | 471 |
| MS.gene34278.t1 | AT3G11910 | 75.758 | 297 | 33 | 1 | 138 | 395 | 135 | 431 | 5.40e-154 | 467 |
| MS.gene34278.t1 | AT3G11910 | 75.758 | 297 | 33 | 1 | 138 | 395 | 135 | 431 | 5.40e-154 | 467 |
| MS.gene34278.t1 | AT3G11910 | 75.758 | 297 | 33 | 1 | 138 | 395 | 136 | 432 | 5.53e-154 | 467 |
| MS.gene34278.t1 | AT3G11910 | 75.758 | 297 | 33 | 1 | 138 | 395 | 136 | 432 | 5.53e-154 | 467 |
| MS.gene34278.t1 | AT3G49600 | 27.948 | 229 | 120 | 5 | 196 | 381 | 102 | 328 | 3.42e-15 | 79.3 |
| MS.gene34278.t1 | AT3G49600 | 27.948 | 229 | 120 | 5 | 196 | 381 | 102 | 328 | 3.42e-15 | 79.3 |
| MS.gene34278.t1 | AT3G49600 | 27.948 | 229 | 120 | 5 | 196 | 381 | 102 | 328 | 3.42e-15 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAAAAAATAATA+AGG | + | 56591:428869-428888 | MS.gene34278:intron | 0.0% |
| !! | TTAATAATACAATTTATTTC+TGG | + | 56591:426745-426764 | MS.gene34278:intron | 10.0% |
| !!! | GTTAAAATAAAAAGTATAAA+TGG | - | 56591:428464-428483 | MS.gene34278:intergenic | 10.0% |
| !!! | CAATAATAAATATCCATTTT+GGG | + | 56591:428488-428507 | MS.gene34278:intron | 15.0% |
| !!! | CTTTGTTGATTTTAAATATA+AGG | + | 56591:428839-428858 | MS.gene34278:intron | 15.0% |
| !! | AAATATGAAGGAAAAATAGT+AGG | - | 56591:428242-428261 | MS.gene34278:intergenic | 20.0% |
| !! | ATGTTTAATATTGTTTGTTC+AGG | + | 56591:427510-427529 | MS.gene34278:intron | 20.0% |
| !! | CCAAAATGGATATTTATTAT+TGG | - | 56591:428490-428509 | MS.gene34278:intergenic | 20.0% |
| !! | GAAATTCAGTAAAGAAAAAA+TGG | - | 56591:427004-427023 | MS.gene34278:intergenic | 20.0% |
| !! | TGAAATAATTGAAATTCAGA+AGG | - | 56591:428043-428062 | MS.gene34278:intergenic | 20.0% |
| !! | TTAATTCAGTGATTCATAAA+AGG | - | 56591:429224-429243 | MS.gene34278:intergenic | 20.0% |
| !!! | ACAAGAAAAGAATCATTTTA+TGG | + | 56591:427960-427979 | MS.gene34278:CDS | 20.0% |
| !!! | ATAACCAATCTAAAATATGA+AGG | - | 56591:428254-428273 | MS.gene34278:intergenic | 20.0% |
| !!! | ATGATTGTGATTTCATTTTT+AGG | + | 56591:428285-428304 | MS.gene34278:intron | 20.0% |
| !!! | ATTTTATGGTAGGTATTTTT+TGG | + | 56591:427974-427993 | MS.gene34278:intron | 20.0% |
| !!! | CCAATAATAAATATCCATTT+TGG | + | 56591:428487-428506 | MS.gene34278:intron | 20.0% |
| !!! | TTAATTTTTTTTCCGAAAGA+AGG | + | 56591:427478-427497 | MS.gene34278:intron | 20.0% |
| !!! | TTTTCCTTCATATTTTAGAT+TGG | + | 56591:428247-428266 | MS.gene34278:intron | 20.0% |
| ! | AAATATTTAAACACCAGAGT+AGG | - | 56591:428563-428582 | MS.gene34278:intergenic | 25.0% |
| ! | ACAAGAATATAGAAAGTGAA+GGG | - | 56591:428439-428458 | MS.gene34278:intergenic | 25.0% |
| ! | ATTCAATATAGTTCATATGG+TGG | - | 56591:427917-427936 | MS.gene34278:intergenic | 25.0% |
| ! | CTATCAAGATCTAATTGTAA+GGG | - | 56591:428738-428757 | MS.gene34278:intergenic | 25.0% |
| ! | CTTACAATTAGATCTTGATA+GGG | + | 56591:428737-428756 | MS.gene34278:CDS | 25.0% |
| ! | GAAGATAACATTTCTAATGT+CGG | - | 56591:426705-426724 | MS.gene34278:intergenic | 25.0% |
| ! | TACAAGAATATAGAAAGTGA+AGG | - | 56591:428440-428459 | MS.gene34278:intergenic | 25.0% |
| ! | TATCAAGATCTAATTGTAAG+GGG | - | 56591:428737-428756 | MS.gene34278:intergenic | 25.0% |
| ! | TCTTGAAAAGTGAACATTTA+TGG | - | 56591:426898-426917 | MS.gene34278:intergenic | 25.0% |
| ! | TGCATTCAATATAGTTCATA+TGG | - | 56591:427920-427939 | MS.gene34278:intergenic | 25.0% |
| !! | AAAGAGTTAACCAAATCTTT+TGG | + | 56591:427643-427662 | MS.gene34278:intron | 25.0% |
| !! | CATTCAGAATAATCTTTTGT+TGG | + | 56591:426624-426643 | MS.gene34278:intron | 25.0% |
| !! | GAAAAGAATCATTTTATGGT+AGG | + | 56591:427964-427983 | MS.gene34278:intron | 25.0% |
| !!! | GTTTCTCATAGTTATTTTGT+AGG | + | 56591:427771-427790 | MS.gene34278:intron | 25.0% |
| !!! | TAACCATGTATTTTAGCTTT+TGG | + | 56591:428195-428214 | MS.gene34278:intron | 25.0% |
| !!! | TCTTCTTGAAATGTGTTTTT+TGG | + | 56591:429189-429208 | MS.gene34278:intron | 25.0% |
| !!! | TGAAGGTAAAGGTTTTTTAA+TGG | + | 56591:427746-427765 | MS.gene34278:intron | 25.0% |
| !!! | TTTGATGATTATTTTGCCAT+TGG | + | 56591:428597-428616 | MS.gene34278:intron | 25.0% |
| AAAAAAGAAACTGGTTGTGT+CGG | + | 56591:427355-427374 | MS.gene34278:CDS | 30.0% | |
| AAAGACAGAACAGAAATACA+AGG | - | 56591:426971-426990 | MS.gene34278:intergenic | 30.0% | |
| AAAGCTAGAAGACAAAATGA+AGG | + | 56591:427729-427748 | MS.gene34278:intron | 30.0% | |
| AAATTCGATCTGAACAAAGT+GGG | - | 56591:425958-425977 | MS.gene34278:intergenic | 30.0% | |
| AATACCTGTGAAGTGTATAA+AGG | - | 56591:428809-428828 | MS.gene34278:intergenic | 30.0% | |
| ACATCGAAAACACCAAAAAA+CGG | + | 56591:426061-426080 | MS.gene34278:CDS | 30.0% | |
| AGAACAGAAATACAAGGAAA+TGG | - | 56591:426965-426984 | MS.gene34278:intergenic | 30.0% | |
| AGAAGACAAAATGAAGGTAA+AGG | + | 56591:427735-427754 | MS.gene34278:intron | 30.0% | |
| ATGATGTCTAAGAACTTAAC+AGG | + | 56591:427695-427714 | MS.gene34278:intron | 30.0% | |
| CAAAACAAAATCACATCCAA+TGG | - | 56591:428616-428635 | MS.gene34278:intergenic | 30.0% | |
| CAACCAAAAGCTAAAATACA+TGG | - | 56591:428201-428220 | MS.gene34278:intergenic | 30.0% | |
| CAGAAAATGAGAAAAACATG+AGG | - | 56591:429133-429152 | MS.gene34278:intergenic | 30.0% | |
| CATGACTCAAAAAAAGAAAC+TGG | + | 56591:427346-427365 | MS.gene34278:CDS | 30.0% | |
| CCTATCAAGATCTAATTGTA+AGG | - | 56591:428739-428758 | MS.gene34278:intergenic | 30.0% | |
| CCTTACAATTAGATCTTGAT+AGG | + | 56591:428736-428755 | MS.gene34278:CDS | 30.0% | |
| CTATATTGAATGCATGAATG+TGG | + | 56591:427926-427945 | MS.gene34278:CDS | 30.0% | |
| CTGAATTTCTCTGTTTGATA+AGG | + | 56591:427015-427034 | MS.gene34278:intron | 30.0% | |
| GAAGAATGATGTGTAAACAA+TGG | - | 56591:428010-428029 | MS.gene34278:intergenic | 30.0% | |
| GGTGAGAAACAAATATTACA+GGG | - | 56591:428529-428548 | MS.gene34278:intergenic | 30.0% | |
| GTCTCGAAGATTATTTATTG+AGG | + | 56591:427836-427855 | MS.gene34278:intron | 30.0% | |
| TAAATTCGATCTGAACAAAG+TGG | - | 56591:425959-425978 | MS.gene34278:intergenic | 30.0% | |
| TAGATCTTGATAGGGATAAT+GGG | + | 56591:428745-428764 | MS.gene34278:CDS | 30.0% | |
| TAGTGTTAGATATCCAGTTT+GGG | + | 56591:426494-426513 | MS.gene34278:intron | 30.0% | |
| TCTGTTTGCAATCAAGTTAA+TGG | - | 56591:428695-428714 | MS.gene34278:intergenic | 30.0% | |
| TGAACTCTTGAACATGATAT+CGG | + | 56591:428985-429004 | MS.gene34278:CDS | 30.0% | |
| TGATGTCTAAGAACTTAACA+GGG | + | 56591:427696-427715 | MS.gene34278:intron | 30.0% | |
| TGGTGAGAAACAAATATTAC+AGG | - | 56591:428530-428549 | MS.gene34278:intergenic | 30.0% | |
| TTACAATTGAGGTTATTCCA+TGG | + | 56591:426314-426333 | MS.gene34278:intron | 30.0% | |
| TTAGATCTTGATAGGGATAA+TGG | + | 56591:428744-428763 | MS.gene34278:CDS | 30.0% | |
| TTCTTCAGCTTCAGTTAAAA+CGG | + | 56591:428347-428366 | MS.gene34278:CDS | 30.0% | |
| ! | AGTATTATTTGAAACTTCCC+AGG | - | 56591:429161-429180 | MS.gene34278:intergenic | 30.0% |
| ! | AGTTAACCAAATCTTTTGGA+TGG | + | 56591:427647-427666 | MS.gene34278:intron | 30.0% |
| ! | GTATTATTTGAAACTTCCCA+GGG | - | 56591:429160-429179 | MS.gene34278:intergenic | 30.0% |
| ! | GTTAACCAAATCTTTTGGAT+GGG | + | 56591:427648-427667 | MS.gene34278:intron | 30.0% |
| ! | TATAACATAGTTCTGTTGTG+TGG | + | 56591:426813-426832 | MS.gene34278:intron | 30.0% |
| ! | TCACATTCCTTATTTCAGAA+AGG | + | 56591:427432-427451 | MS.gene34278:CDS | 30.0% |
| ! | TGCTTCTTTTGATAAGTATG+TGG | + | 56591:428106-428125 | MS.gene34278:CDS | 30.0% |
| ! | TGTGTTTCTGCAATATCAAA+AGG | - | 56591:427175-427194 | MS.gene34278:intergenic | 30.0% |
| ! | TTATGGATTGTTGAGAGAAA+AGG | - | 56591:426881-426900 | MS.gene34278:intergenic | 30.0% |
| ! | TTTCTCATGTTTTCGTGTTT+TGG | - | 56591:426130-426149 | MS.gene34278:intergenic | 30.0% |
| !! | CATTTTTAGGAAGCAAGAAA+GGG | + | 56591:428298-428317 | MS.gene34278:intron | 30.0% |
| !! | TCATTTTTAGGAAGCAAGAA+AGG | + | 56591:428297-428316 | MS.gene34278:intron | 30.0% |
| !! | TGACTAACCTTTCTGAAATA+AGG | - | 56591:427442-427461 | MS.gene34278:intergenic | 30.0% |
| !!! | TCATGTTTTTTGTCTTTCTG+AGG | + | 56591:427096-427115 | MS.gene34278:intron | 30.0% |
| !!! | TGGATGTGATTTTGTTTTGT+TGG | + | 56591:428617-428636 | MS.gene34278:intron | 30.0% |
| !!! | TTTTTTTATCACAGCCTTGA+GGG | + | 56591:426447-426466 | MS.gene34278:intron | 30.0% |
| !!! | TTTTTTTTATCACAGCCTTG+AGG | + | 56591:426446-426465 | MS.gene34278:intron | 30.0% |
| AAATTCACAGAAGCCCAAAA+TGG | - | 56591:428504-428523 | MS.gene34278:intergenic | 35.0% | |
| AACACGAAAACATGAGAAAG+CGG | + | 56591:426131-426150 | MS.gene34278:CDS | 35.0% | |
| AAGACGAAAGAGAATATGGT+GGG | - | 56591:426004-426023 | MS.gene34278:intergenic | 35.0% | |
| ACCATACAGAAGTTGTTTGA+AGG | + | 56591:427891-427910 | MS.gene34278:CDS | 35.0% | |
| ACTGAAAATGATATGCCATC+TGG | + | 56591:427553-427572 | MS.gene34278:CDS | 35.0% | |
| ATACCTGTCTATCTTACATG+TGG | + | 56591:429265-429284 | MS.gene34278:CDS | 35.0% | |
| CATAAGACACATCCTTCTTT+CGG | - | 56591:427493-427512 | MS.gene34278:intergenic | 35.0% | |
| CTGAAAATGATATGCCATCT+GGG | + | 56591:427554-427573 | MS.gene34278:CDS | 35.0% | |
| GAATTGTATGATCCTAGTAG+AGG | + | 56591:427253-427272 | MS.gene34278:CDS | 35.0% | |
| GGAGAGTTGAATACTTATGT+TGG | + | 56591:427036-427055 | MS.gene34278:intron | 35.0% | |
| GTAGTGTTAGATATCCAGTT+TGG | + | 56591:426493-426512 | MS.gene34278:intron | 35.0% | |
| TCAGATCGAATTTAAACCGT+TGG | + | 56591:425965-425984 | MS.gene34278:CDS | 35.0% | |
| TGACTCTTCTTAAAGTAACC+CGG | - | 56591:426346-426365 | MS.gene34278:intergenic | 35.0% | |
| TGCAGACATAAGTTGTCAAT+CGG | + | 56591:429060-429079 | MS.gene34278:CDS | 35.0% | |
| TGTATCCCATCCAAAAGATT+TGG | - | 56591:427656-427675 | MS.gene34278:intergenic | 35.0% | |
| TTAATGGCCATTACAGTTAC+AGG | - | 56591:428679-428698 | MS.gene34278:intergenic | 35.0% | |
| TTTAACTGAAGCTGAAGAAC+AGG | - | 56591:428346-428365 | MS.gene34278:intergenic | 35.0% | |
| ! | ATCTTTTGTTGGAACCTAAG+AGG | + | 56591:426635-426654 | MS.gene34278:intron | 35.0% |
| ! | TTCAGAAAGGTTAGTCAGTA+GGG | + | 56591:427445-427464 | MS.gene34278:intron | 35.0% |
| ! | TTTCAGAAAGGTTAGTCAGT+AGG | + | 56591:427444-427463 | MS.gene34278:intron | 35.0% |
| !! | CTTTCTGAGGATAACTTGTT+TGG | + | 56591:427109-427128 | MS.gene34278:intron | 35.0% |
| !!! | GGTAGGTATTTTTTGGCTTT+AGG | + | 56591:427981-428000 | MS.gene34278:intron | 35.0% |
| AACAAACTCTGTAATGCCAG+AGG | - | 56591:427586-427605 | MS.gene34278:intergenic | 40.0% | |
| AAGTATCATGCAGAGCAGTA+TGG | + | 56591:428155-428174 | MS.gene34278:CDS | 40.0% | |
| ACAAACTCTGTAATGCCAGA+GGG | - | 56591:427585-427604 | MS.gene34278:intergenic | 40.0% | |
| AGAGACATGTCTCTTCTTTG+GGG | + | 56591:426669-426688 | MS.gene34278:intron | 40.0% | |
| AGAGAGACATGTCTCTTCTT+TGG | + | 56591:426667-426686 | MS.gene34278:intron | 40.0% | |
| ATTGTAAGGGGAACTCATAG+CGG | - | 56591:428725-428744 | MS.gene34278:intergenic | 40.0% | |
| CAACTTAGCTATCTCTGACT+CGG | - | 56591:429110-429129 | MS.gene34278:intergenic | 40.0% | |
| CATAAGTTGTCAATCGGAAG+TGG | + | 56591:429066-429085 | MS.gene34278:CDS | 40.0% | |
| CCAGAGTAGGAAAAGAAGTT+TGG | - | 56591:428550-428569 | MS.gene34278:intergenic | 40.0% | |
| GAAGACGAAAGAGAATATGG+TGG | - | 56591:426005-426024 | MS.gene34278:intergenic | 40.0% | |
| GACAACAGAGGTTACAATTG+AGG | + | 56591:426303-426322 | MS.gene34278:intron | 40.0% | |
| GACTCTTCTTAAAGTAACCC+GGG | - | 56591:426345-426364 | MS.gene34278:intergenic | 40.0% | |
| GAGAGACATGTCTCTTCTTT+GGG | + | 56591:426668-426687 | MS.gene34278:intron | 40.0% | |
| GAGGAAGACGAAAGAGAATA+TGG | - | 56591:426008-426027 | MS.gene34278:intergenic | 40.0% | |
| GATCTTCAGCTTGATGTCAA+AGG | + | 56591:428068-428087 | MS.gene34278:intron | 40.0% | |
| GCAACCTTTATACACTTCAC+AGG | + | 56591:428802-428821 | MS.gene34278:intron | 40.0% | |
| GCCTTCAAACAACTTCTGTA+TGG | - | 56591:427895-427914 | MS.gene34278:intergenic | 40.0% | |
| GCGCAAAGATCTTGATTACT+GGG | + | 56591:427321-427340 | MS.gene34278:CDS | 40.0% | |
| GGAAGATAGATGCATACTTG+AGG | + | 56591:427285-427304 | MS.gene34278:CDS | 40.0% | |
| GGATCATACAATTCAGCAAG+AGG | - | 56591:427247-427266 | MS.gene34278:intergenic | 40.0% | |
| GGGATTGAAGATTGATCCAA+CGG | - | 56591:425984-426003 | MS.gene34278:intergenic | 40.0% | |
| TATCTTACATGTGGCGATGT+AGG | + | 56591:429274-429293 | MS.gene34278:CDS | 40.0% | |
| TCATGTAACAAGTAGCTCCT+TGG | - | 56591:427390-427409 | MS.gene34278:intergenic | 40.0% | |
| TCTCTCTTCCTAAACCTCTT+AGG | - | 56591:426652-426671 | MS.gene34278:intergenic | 40.0% | |
| TGCGCAAAGATCTTGATTAC+TGG | + | 56591:427320-427339 | MS.gene34278:CDS | 40.0% | |
| TGTTGGAACCTAAGAGGTTT+AGG | + | 56591:426641-426660 | MS.gene34278:intron | 40.0% | |
| ! | CCAAACTTCTTTTCCTACTC+TGG | + | 56591:428547-428566 | MS.gene34278:intron | 40.0% |
| ! | GGCATATCATTTTCAGTCGT+GGG | - | 56591:427550-427569 | MS.gene34278:intergenic | 40.0% |
| ! | TCTCATTTTCTGACTTCCCT+GGG | + | 56591:429141-429160 | MS.gene34278:intron | 40.0% |
| ! | TGGCATATCATTTTCAGTCG+TGG | - | 56591:427551-427570 | MS.gene34278:intergenic | 40.0% |
| ! | TTCTCATTTTCTGACTTCCC+TGG | + | 56591:429140-429159 | MS.gene34278:intron | 40.0% |
| !! | ATTGAGGCTTCCACTTTTCA+GGG | + | 56591:427852-427871 | MS.gene34278:intron | 40.0% |
| !! | CTCATGTTTTCGTGTTTTGG+AGG | - | 56591:426127-426146 | MS.gene34278:intergenic | 40.0% |
| !! | TATTGAGGCTTCCACTTTTC+AGG | + | 56591:427851-427870 | MS.gene34278:intron | 40.0% |
| !! | TGATGTGACCAGTTTGTTAC+AGG | + | 56591:426562-426581 | MS.gene34278:intron | 40.0% |
| !! | TGTGTCGGTTTGAAAAACCA+AGG | + | 56591:427370-427389 | MS.gene34278:CDS | 40.0% |
| !!! | GGTGTTTTCGATGTTGTTTC+CGG | - | 56591:426055-426074 | MS.gene34278:intergenic | 40.0% |
| AACACCAAAAAACGGCCGTT+TGG | + | 56591:426069-426088 | MS.gene34278:CDS | 45.0% | |
| AACTGAAGCTGAAGAACAGG+TGG | - | 56591:428343-428362 | MS.gene34278:intergenic | 45.0% | |
| AGATCTCTTCCTCTGGTCAT+AGG | + | 56591:426369-426388 | MS.gene34278:intron | 45.0% | |
| CACAACAGTTCCCTGAAAAG+TGG | - | 56591:427865-427884 | MS.gene34278:intergenic | 45.0% | |
| CTTGACACTGATGCATCTAG+CGG | - | 56591:428962-428981 | MS.gene34278:intergenic | 45.0% | |
| GTAAAGCTTGTGCACTGCAT+AGG | + | 56591:429329-429348 | MS.gene34278:CDS | 45.0% | |
| GTAACCTCTGTTGTCAAACG+CGG | - | 56591:426298-426317 | MS.gene34278:intergenic | 45.0% | |
| GTCACAAAGATCTCTTCCTC+TGG | + | 56591:426362-426381 | MS.gene34278:intron | 45.0% | |
| GTGGAAGTAGAACAGCTTGA+GGG | + | 56591:428125-428144 | MS.gene34278:CDS | 45.0% | |
| TAATGCGCGTGAGAGTGATT+GGG | + | 56591:427204-427223 | MS.gene34278:CDS | 45.0% | |
| TCCACAACATAGCCTCTACT+AGG | - | 56591:427268-427287 | MS.gene34278:intergenic | 45.0% | |
| TCCTAGTAGAGGCTATGTTG+TGG | + | 56591:427264-427283 | MS.gene34278:CDS | 45.0% | |
| TCGCCACATGTAAGATAGAC+AGG | - | 56591:429271-429290 | MS.gene34278:intergenic | 45.0% | |
| TGCAGAGCAGTATGGTTTAC+AGG | + | 56591:428163-428182 | MS.gene34278:CDS | 45.0% | |
| TGTGGAAGTAGAACAGCTTG+AGG | + | 56591:428124-428143 | MS.gene34278:CDS | 45.0% | |
| TTAATGCGCGTGAGAGTGAT+TGG | + | 56591:427203-427222 | MS.gene34278:CDS | 45.0% | |
| TTCGACGCCTGTAACTGTAA+TGG | + | 56591:428669-428688 | MS.gene34278:intron | 45.0% | |
| TTGTCAATCGGAAGTGGAGA+TGG | + | 56591:429072-429091 | MS.gene34278:CDS | 45.0% | |
| TTTCAGGGAACTGTTGTGGA+AGG | + | 56591:427867-427886 | MS.gene34278:intron | 45.0% | |
| TTTGTGGAATGCGGGAATAG+CGG | - | 56591:426202-426221 | MS.gene34278:intergenic | 45.0% | |
| ! | CAAAAATAGCCTTGCCCTCA+AGG | - | 56591:426464-426483 | MS.gene34278:intergenic | 45.0% |
| ! | TGATTTTGCGCGAGACACTA+TGG | + | 56591:428378-428397 | MS.gene34278:CDS | 45.0% |
| !! | AAGTGGGCTGGATAGGAAAT+GGG | + | 56591:426529-426548 | MS.gene34278:intron | 45.0% |
| !! | AGTTTGTTACAGGAGGATCC+GGG | + | 56591:426572-426591 | MS.gene34278:intron | 45.0% |
| !! | CACTTTTCAGGGAACTGTTG+TGG | + | 56591:427863-427882 | MS.gene34278:intron | 45.0% |
| !! | CAGTTTGTTACAGGAGGATC+CGG | + | 56591:426571-426590 | MS.gene34278:intron | 45.0% |
| !! | TGTAGGCTTTGAAGAGACGT+TGG | + | 56591:429291-429310 | MS.gene34278:CDS | 45.0% |
| !! | TGTGACCAGTTTGTTACAGG+AGG | + | 56591:426565-426584 | MS.gene34278:intron | 45.0% |
| !!! | AAGGCTATTTTTGTAGCGGC+AGG | + | 56591:426471-426490 | MS.gene34278:intron | 45.0% |
| !!! | CGTGTTTTGGAGGTTGTTTC+CGG | - | 56591:426117-426136 | MS.gene34278:intergenic | 45.0% |
| !!! | GGGCAAGGCTATTTTTGTAG+CGG | + | 56591:426467-426486 | MS.gene34278:intron | 45.0% |
| AATGCGCGTGAGAGTGATTG+GGG | + | 56591:427205-427224 | MS.gene34278:CDS | 50.0% | |
| AGTTGCGCGTTTGTGGAATG+CGG | - | 56591:426211-426230 | MS.gene34278:intergenic | 50.0% | |
| CATGATATCGGAAGCTGCAG+TGG | + | 56591:428997-429016 | MS.gene34278:CDS | 50.0% | |
| CATTCCACAAACGCGCAACT+CGG | + | 56591:426211-426230 | MS.gene34278:CDS | 50.0% | |
| CGAATACTTCTGTCTGCGTC+AGG | - | 56591:428783-428802 | MS.gene34278:intergenic | 50.0% | |
| CGGATCCTCCTGTAACAAAC+TGG | - | 56591:426573-426592 | MS.gene34278:intergenic | 50.0% | |
| GGAGATTGATGCTCTTGCAG+AGG | + | 56591:429018-429037 | MS.gene34278:CDS | 50.0% | |
| GGTTATTCCATGGTCATGCC+CGG | + | 56591:426324-426343 | MS.gene34278:intron | 50.0% | |
| GTTATTCCATGGTCATGCCC+GGG | + | 56591:426325-426344 | MS.gene34278:intron | 50.0% | |
| TCCTATCCAGCCCACTTGTT+GGG | - | 56591:426526-426545 | MS.gene34278:intergenic | 50.0% | |
| TGCGCGAGACACTATGGTAA+AGG | + | 56591:428384-428403 | MS.gene34278:CDS | 50.0% | |
| TTATCACAGCCTTGAGGGCA+AGG | + | 56591:426452-426471 | MS.gene34278:intron | 50.0% | |
| TTCCTATCCAGCCCACTTGT+TGG | - | 56591:426527-426546 | MS.gene34278:intergenic | 50.0% | |
| ! | GTTGTTTCCGGCAAGAGAGA+GGG | - | 56591:426043-426062 | MS.gene34278:intergenic | 50.0% |
| !! | CAAGTGGGCTGGATAGGAAA+TGG | + | 56591:426528-426547 | MS.gene34278:intron | 50.0% |
| !! | TGTTGTTTCCGGCAAGAGAG+AGG | - | 56591:426044-426063 | MS.gene34278:intergenic | 50.0% |
| !!! | GACACCAAACGGCCGTTTTT+TGG | - | 56591:426076-426095 | MS.gene34278:intergenic | 50.0% |
| AAGTAACCCGGGCATGACCA+TGG | - | 56591:426334-426353 | MS.gene34278:intergenic | 55.0% | |
| ACAGGAGGATCCGGGCATTT+AGG | + | 56591:426580-426599 | MS.gene34278:intron | 55.0% | |
| AGAGAGAGGGAAAGGGGAGA+AGG | - | 56591:426030-426049 | MS.gene34278:intergenic | 55.0% | |
| ATCCCCTCTCCCTAAATGCC+CGG | - | 56591:426593-426612 | MS.gene34278:intergenic | 55.0% | |
| ATCCGGGCATTTAGGGAGAG+GGG | + | 56591:426588-426607 | MS.gene34278:intron | 55.0% | |
| CACTGATGCATCTAGCGGTG+CGG | - | 56591:428957-428976 | MS.gene34278:intergenic | 55.0% | |
| CAGGAGGATCCGGGCATTTA+GGG | + | 56591:426581-426600 | MS.gene34278:intron | 55.0% | |
| CCGGAGAAAGGGACACCAAA+CGG | - | 56591:426087-426106 | MS.gene34278:intergenic | 55.0% | |
| CTCTTCCTCTGGTCATAGGC+TGG | + | 56591:426373-426392 | MS.gene34278:intron | 55.0% | |
| GATCCGGGCATTTAGGGAGA+GGG | + | 56591:426587-426606 | MS.gene34278:intron | 55.0% | |
| GGATCCAAAGCGGGTCAAAG+CGG | - | 56591:426157-426176 | MS.gene34278:intergenic | 55.0% | |
| GTTGCGCGTTTGTGGAATGC+GGG | - | 56591:426210-426229 | MS.gene34278:intergenic | 55.0% | |
| TCCGGCAAGAGAGAGGGAAA+GGG | - | 56591:426037-426056 | MS.gene34278:intergenic | 55.0% | |
| TCTGTCCAGCCTATGACCAG+AGG | - | 56591:426381-426400 | MS.gene34278:intergenic | 55.0% | |
| TTCCGGCAAGAGAGAGGGAA+AGG | - | 56591:426038-426057 | MS.gene34278:intergenic | 55.0% | |
| !! | CCGTTTGGTGTCCCTTTCTC+CGG | + | 56591:426084-426103 | MS.gene34278:CDS | 55.0% |
| CCCCTTTCCCTCTCTCTTGC+CGG | + | 56591:426033-426052 | MS.gene34278:CDS | 60.0% | |
| CCGGCAAGAGAGAGGGAAAG+GGG | - | 56591:426036-426055 | MS.gene34278:intergenic | 60.0% | |
| GAATAGCGGCCGCGAAATGG+TGG | - | 56591:426188-426207 | MS.gene34278:intergenic | 60.0% | |
| GAGAGGGAAAGGGGAGAAGG+AGG | - | 56591:426027-426046 | MS.gene34278:intergenic | 60.0% | |
| GGATCCGGGCATTTAGGGAG+AGG | + | 56591:426586-426605 | MS.gene34278:intron | 60.0% | |
| GGGAGAGGGGATGGAGAGAA+AGG | + | 56591:426601-426620 | MS.gene34278:intron | 60.0% | |
| GGGCATTTAGGGAGAGGGGA+TGG | + | 56591:426592-426611 | MS.gene34278:intron | 60.0% | |
| TCCACAAACGCGCAACTCGG+TGG | + | 56591:426214-426233 | MS.gene34278:CDS | 60.0% | |
| TCTAGCGGTGCGGATGCAAG+TGG | - | 56591:428947-428966 | MS.gene34278:intergenic | 60.0% | |
| ! | AACTCGGTGGCGTTGTGACG+CGG | + | 56591:426227-426246 | MS.gene34278:CDS | 60.0% |
| ! | GGTTGTTTCCGGCGAGTTGC+CGG | - | 56591:426106-426125 | MS.gene34278:intergenic | 60.0% |
| ! | GTGACGCGGCTGCTCGTTTT+TGG | + | 56591:426241-426260 | MS.gene34278:CDS | 60.0% |
| !! | GCCCAACAAGTGGGCTGGAT+AGG | + | 56591:426522-426541 | MS.gene34278:intron | 60.0% |
| CCCTTTCTCCGGCAACTCGC+CGG | + | 56591:426095-426114 | MS.gene34278:CDS | 65.0% | |
| CCGGCGAGTTGCCGGAGAAA+GGG | - | 56591:426098-426117 | MS.gene34278:intergenic | 65.0% | |
| CGGGAATAGCGGCCGCGAAA+TGG | - | 56591:426191-426210 | MS.gene34278:intergenic | 65.0% | |
| GCCACCGAGTTGCGCGTTTG+TGG | - | 56591:426218-426237 | MS.gene34278:intergenic | 65.0% | |
| GCCAGAGGGATGCTCCCAGA+TGG | - | 56591:427571-427590 | MS.gene34278:intergenic | 65.0% | |
| GCGGCCGCGTTTGACAACAG+AGG | + | 56591:426291-426310 | MS.gene34278:CDS | 65.0% | |
| TCCGGCGAGTTGCCGGAGAA+AGG | - | 56591:426099-426118 | MS.gene34278:intergenic | 65.0% | |
| TGGGCCGACGCCCAACAAGT+GGG | + | 56591:426513-426532 | MS.gene34278:intron | 65.0% | |
| TTGGGCCGACGCCCAACAAG+TGG | + | 56591:426512-426531 | MS.gene34278:intron | 65.0% | |
| TTGTCAAACGCGGCCGCTCC+CGG | - | 56591:426288-426307 | MS.gene34278:intergenic | 65.0% | |
| ! | CCAGCCCACTTGTTGGGCGT+CGG | - | 56591:426520-426539 | MS.gene34278:intergenic | 65.0% |
| !! | GCCATCTGGGAGCATCCCTC+TGG | + | 56591:427567-427586 | MS.gene34278:CDS | 65.0% |
| !! | TGTTGGGCGTCGGCCCAAAC+TGG | - | 56591:426510-426529 | MS.gene34278:intergenic | 65.0% |
| CCGACGCCCAACAAGTGGGC+TGG | + | 56591:426517-426536 | MS.gene34278:intron | 70.0% | |
| CGCCCCGCTCCACCATTTCG+CGG | + | 56591:426176-426195 | MS.gene34278:CDS | 70.0% | |
| GAGCGGGGCGGATCCAAAGC+GGG | - | 56591:426166-426185 | MS.gene34278:intergenic | 70.0% | |
| GGAGCGGGGCGGATCCAAAG+CGG | - | 56591:426167-426186 | MS.gene34278:intergenic | 70.0% | |
| ! | CGCGAAATGGTGGAGCGGGG+CGG | - | 56591:426178-426197 | MS.gene34278:intergenic | 70.0% |
| ! | CGGCCGCGAAATGGTGGAGC+GGG | - | 56591:426182-426201 | MS.gene34278:intergenic | 70.0% |
| ! | GCGGCCGCGAAATGGTGGAG+CGG | - | 56591:426183-426202 | MS.gene34278:intergenic | 70.0% |
| ! | GCGGCCGCTTTGACCCGCTT+TGG | + | 56591:426150-426169 | MS.gene34278:CDS | 70.0% |
| ! | GGCCGCGAAATGGTGGAGCG+GGG | - | 56591:426181-426200 | MS.gene34278:intergenic | 70.0% |
| ! | CTCCCGGCGCTATCGCGGCG+CGG | - | 56591:426272-426291 | MS.gene34278:intergenic | 80.0% |
| ! | CTCCGCGCCGCGATAGCGCC+GGG | + | 56591:426267-426286 | MS.gene34278:CDS | 80.0% |
| ! | GCTCCGCGCCGCGATAGCGC+CGG | + | 56591:426266-426285 | MS.gene34278:CDS | 80.0% |
| ! | GGCCGCTCCCGGCGCTATCG+CGG | - | 56591:426277-426296 | MS.gene34278:intergenic | 80.0% |
| ! | GGCGCTATCGCGGCGCGGAG+CGG | - | 56591:426267-426286 | MS.gene34278:intergenic | 80.0% |
| !! | CGCCGCGATAGCGCCGGGAG+CGG | + | 56591:426272-426291 | MS.gene34278:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56591 | gene | 425934 | 429378 | 425934 | ID=MS.gene34278 |
| 56591 | mRNA | 425934 | 429378 | 425934 | ID=MS.gene34278.t1;Parent=MS.gene34278 |
| 56591 | exon | 425934 | 426312 | 425934 | ID=MS.gene34278.t1.exon1;Parent=MS.gene34278.t1 |
| 56591 | CDS | 425934 | 426312 | 425934 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 427155 | 427453 | 427155 | ID=MS.gene34278.t1.exon2;Parent=MS.gene34278.t1 |
| 56591 | CDS | 427155 | 427453 | 427155 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 427532 | 427633 | 427532 | ID=MS.gene34278.t1.exon3;Parent=MS.gene34278.t1 |
| 56591 | CDS | 427532 | 427633 | 427532 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 427873 | 427981 | 427873 | ID=MS.gene34278.t1.exon4;Parent=MS.gene34278.t1 |
| 56591 | CDS | 427873 | 427981 | 427873 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 428069 | 428184 | 428069 | ID=MS.gene34278.t1.exon5;Parent=MS.gene34278.t1 |
| 56591 | CDS | 428069 | 428184 | 428069 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 428307 | 428405 | 428307 | ID=MS.gene34278.t1.exon6;Parent=MS.gene34278.t1 |
| 56591 | CDS | 428307 | 428405 | 428307 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 428714 | 428795 | 428714 | ID=MS.gene34278.t1.exon7;Parent=MS.gene34278.t1 |
| 56591 | CDS | 428714 | 428795 | 428714 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 428942 | 429135 | 428942 | ID=MS.gene34278.t1.exon8;Parent=MS.gene34278.t1 |
| 56591 | CDS | 428942 | 429135 | 428942 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| 56591 | exon | 429265 | 429378 | 429265 | ID=MS.gene34278.t1.exon9;Parent=MS.gene34278.t1 |
| 56591 | CDS | 429265 | 429378 | 429265 | ID=cds.MS.gene34278.t1;Parent=MS.gene34278.t1 |
| Gene Sequence |
| Protein sequence |
