Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34397.t1 | XP_013469744.1 | 98.5 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 1.30E-192 | 682.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34397.t1 | Q3L181 | 67.2 | 335 | 110 | 0 | 5 | 339 | 1 | 335 | 5.4e-136 | 485.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34397.t1 | A0A072VPP5 | 98.5 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 9.1e-193 | 682.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05652 | MS.gene34397 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene34397 | 0.825943 | 3.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34397.t1 | MTR_1g102750 | 98.529 | 340 | 5 | 0 | 1 | 340 | 1 | 340 | 0.0 | 692 |
| MS.gene34397.t1 | MTR_1g102750 | 98.596 | 285 | 4 | 0 | 1 | 285 | 1 | 285 | 0.0 | 582 |
| MS.gene34397.t1 | MTR_7g114980 | 65.396 | 341 | 115 | 1 | 3 | 340 | 9 | 349 | 1.16e-172 | 483 |
| MS.gene34397.t1 | MTR_7g114970 | 62.832 | 339 | 124 | 2 | 3 | 340 | 5 | 342 | 2.82e-167 | 469 |
| MS.gene34397.t1 | MTR_7g114990 | 63.393 | 336 | 120 | 2 | 5 | 340 | 13 | 345 | 2.34e-165 | 465 |
| MS.gene34397.t1 | MTR_7g115010 | 60.947 | 338 | 114 | 2 | 5 | 340 | 9 | 330 | 5.33e-156 | 441 |
| MS.gene34397.t1 | MTR_7g114980 | 66.549 | 284 | 92 | 1 | 3 | 283 | 9 | 292 | 1.93e-144 | 410 |
| MS.gene34397.t1 | MTR_7g114970 | 64.539 | 282 | 98 | 2 | 3 | 283 | 5 | 285 | 3.10e-142 | 404 |
| MS.gene34397.t1 | MTR_7g114970 | 64.413 | 281 | 98 | 2 | 3 | 282 | 5 | 284 | 3.17e-141 | 401 |
| MS.gene34397.t1 | MTR_7g021850 | 58.929 | 336 | 130 | 5 | 5 | 339 | 4 | 332 | 3.95e-138 | 395 |
| MS.gene34397.t1 | MTR_7g021680 | 58.036 | 336 | 133 | 6 | 5 | 339 | 4 | 332 | 1.48e-134 | 386 |
| MS.gene34397.t1 | MTR_7g021820 | 58.036 | 336 | 133 | 6 | 5 | 339 | 4 | 332 | 1.48e-134 | 386 |
| MS.gene34397.t1 | MTR_7g114970 | 66.805 | 241 | 79 | 1 | 101 | 340 | 8 | 248 | 1.95e-123 | 355 |
| MS.gene34397.t1 | MTR_7g114970 | 65.500 | 200 | 68 | 1 | 142 | 340 | 1 | 200 | 8.27e-97 | 285 |
| MS.gene34397.t1 | MTR_7g114970 | 64.322 | 199 | 70 | 1 | 3 | 201 | 5 | 202 | 4.86e-96 | 283 |
| MS.gene34397.t1 | MTR_7g021825 | 63.014 | 146 | 53 | 1 | 161 | 305 | 15 | 160 | 2.83e-65 | 203 |
| MS.gene34397.t1 | MTR_1g102740 | 86.111 | 108 | 15 | 0 | 233 | 340 | 1 | 108 | 1.76e-62 | 194 |
| MS.gene34397.t1 | MTR_7g021670 | 54.615 | 130 | 56 | 3 | 5 | 134 | 4 | 130 | 1.19e-37 | 135 |
| MS.gene34397.t1 | MTR_7g021670 | 52.381 | 105 | 46 | 2 | 235 | 339 | 146 | 246 | 2.28e-32 | 121 |
| MS.gene34397.t1 | MTR_7g067855 | 40.426 | 141 | 49 | 2 | 235 | 340 | 15 | 155 | 1.17e-29 | 111 |
| MS.gene34397.t1 | MTR_3g449790 | 29.052 | 327 | 193 | 11 | 7 | 309 | 37 | 348 | 9.74e-28 | 111 |
| MS.gene34397.t1 | MTR_1g047250 | 30.368 | 326 | 190 | 12 | 10 | 313 | 6 | 316 | 1.64e-27 | 110 |
| MS.gene34397.t1 | MTR_3g449790 | 28.440 | 327 | 189 | 11 | 7 | 309 | 37 | 342 | 2.44e-26 | 107 |
| MS.gene34397.t1 | MTR_3g092140 | 27.887 | 355 | 206 | 16 | 4 | 332 | 35 | 365 | 1.47e-24 | 104 |
| MS.gene34397.t1 | MTR_4g092750 | 28.352 | 261 | 164 | 8 | 9 | 253 | 5 | 258 | 8.47e-20 | 88.6 |
| MS.gene34397.t1 | MTR_4g092750 | 28.352 | 261 | 164 | 8 | 9 | 253 | 5 | 258 | 8.50e-20 | 89.0 |
| MS.gene34397.t1 | MTR_4g092750 | 28.352 | 261 | 164 | 8 | 9 | 253 | 5 | 258 | 1.27e-19 | 87.8 |
| MS.gene34397.t1 | MTR_8g088160 | 26.984 | 252 | 140 | 8 | 5 | 219 | 40 | 284 | 8.57e-19 | 86.3 |
| MS.gene34397.t1 | MTR_1g042730 | 25.826 | 333 | 199 | 13 | 9 | 299 | 65 | 391 | 8.93e-19 | 87.0 |
| MS.gene34397.t1 | MTR_6g035180 | 51.724 | 58 | 28 | 0 | 283 | 340 | 7 | 64 | 3.02e-16 | 72.8 |
| MS.gene34397.t1 | MTR_7g021685 | 49.231 | 65 | 32 | 1 | 5 | 69 | 4 | 67 | 1.52e-12 | 63.9 |
| MS.gene34397.t1 | MTR_4g036845 | 24.242 | 330 | 182 | 11 | 14 | 321 | 11 | 294 | 3.48e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34397.t1 | AT1G60680 | 57.270 | 337 | 140 | 3 | 4 | 339 | 6 | 339 | 3.37e-138 | 396 |
| MS.gene34397.t1 | AT1G60710 | 58.036 | 336 | 136 | 4 | 5 | 339 | 7 | 338 | 4.85e-135 | 388 |
| MS.gene34397.t1 | AT1G60690 | 56.380 | 337 | 142 | 4 | 4 | 339 | 6 | 338 | 1.04e-134 | 387 |
| MS.gene34397.t1 | AT1G60750 | 56.845 | 336 | 126 | 4 | 4 | 339 | 7 | 323 | 8.19e-134 | 384 |
| MS.gene34397.t1 | AT1G60730 | 56.548 | 336 | 141 | 4 | 5 | 339 | 7 | 338 | 4.87e-133 | 383 |
| MS.gene34397.t1 | AT1G10810 | 56.548 | 336 | 141 | 4 | 5 | 339 | 7 | 338 | 1.37e-130 | 377 |
| MS.gene34397.t1 | AT1G60730 | 53.371 | 356 | 141 | 5 | 5 | 339 | 7 | 358 | 3.61e-128 | 371 |
| MS.gene34397.t1 | AT1G10810 | 59.328 | 268 | 105 | 3 | 73 | 339 | 22 | 286 | 2.93e-109 | 320 |
| MS.gene34397.t1 | AT1G60680 | 65.116 | 215 | 74 | 1 | 4 | 218 | 6 | 219 | 5.34e-98 | 290 |
| MS.gene34397.t1 | AT1G10810 | 61.712 | 222 | 82 | 3 | 5 | 225 | 7 | 226 | 1.27e-89 | 269 |
| MS.gene34397.t1 | AT1G60730 | 54.110 | 146 | 63 | 3 | 5 | 150 | 7 | 148 | 5.61e-44 | 149 |
| MS.gene34397.t1 | AT1G04690 | 31.922 | 307 | 181 | 10 | 10 | 299 | 6 | 301 | 2.27e-32 | 123 |
| MS.gene34397.t1 | AT1G06690 | 29.377 | 337 | 195 | 12 | 7 | 315 | 48 | 369 | 1.20e-28 | 114 |
| MS.gene34397.t1 | AT5G53580 | 28.012 | 332 | 194 | 14 | 7 | 313 | 39 | 350 | 1.11e-23 | 100 |
| MS.gene34397.t1 | AT4G33670 | 29.231 | 260 | 161 | 8 | 10 | 253 | 9 | 261 | 2.86e-23 | 98.6 |
| MS.gene34397.t1 | AT1G04420 | 24.850 | 334 | 197 | 11 | 9 | 297 | 60 | 384 | 1.72e-16 | 80.5 |
Find 81 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCTGATGGCATGGTTT+TGG | 0.180811 | 1.2:+76460871 | MS.gene34397:CDS |
| AAGGTTTACAGGAGAAAATT+TGG | 0.231620 | 1.2:+76461854 | MS.gene34397:CDS |
| TTTGGATGTGGAGGATTATC+TGG | 0.250656 | 1.2:+76460381 | MS.gene34397:CDS |
| CAGCACTCCCTCACATATTC+AGG | 0.270626 | 1.2:-76460908 | None:intergenic |
| GAAGGAAAGATAAAATATAT+TGG | 0.282400 | 1.2:+76461163 | MS.gene34397:CDS |
| GAGATCTGATGTATCGAAAA+AGG | 0.319260 | 1.2:-76460475 | None:intergenic |
| AAGCTTACAGTTTCTTCAAT+TGG | 0.320394 | 1.2:-76461004 | None:intergenic |
| TCCTATTACTGCTTTGGAAA+TGG | 0.326973 | 1.2:+76461234 | MS.gene34397:CDS |
| GTCCAATTGGCTACGAAGTT+TGG | 0.338391 | 1.2:+76460842 | MS.gene34397:CDS |
| ATAGTATATCACAATATCTT+TGG | 0.338665 | 1.2:+76462455 | MS.gene34397:CDS |
| GCTATGCATCCAAGGTTTAC+AGG | 0.342718 | 1.2:+76461843 | MS.gene34397:CDS |
| TGGAAATGGAGTATTCCTTA+TGG | 0.354234 | 1.2:+76461248 | MS.gene34397:CDS |
| ACAAGTCCCAAGAGTCAAAC+TGG | 0.359871 | 1.2:+76460062 | MS.gene34397:CDS |
| ATTAGCATGGCTTCTGCATC+AGG | 0.361890 | 1.2:+76461950 | MS.gene34397:CDS |
| ATCAAGGAAGTATTCAATAG+AGG | 0.374151 | 1.2:+76460447 | MS.gene34397:CDS |
| GGGTACCCAGTTTGACTCTT+GGG | 0.376406 | 1.2:-76460068 | None:intergenic |
| TCCATTTCCAAAGCAGTAAT+AGG | 0.379605 | 1.2:-76461235 | None:intergenic |
| AGTTCATCCTATTACTGCTT+TGG | 0.389070 | 1.2:+76461228 | MS.gene34397:CDS |
| TGGGTACCCAGTTTGACTCT+TGG | 0.395833 | 1.2:-76460069 | None:intergenic |
| TCTAGGTTGGGATTTGGATG+TGG | 0.401427 | 1.2:+76460369 | MS.gene34397:CDS |
| CGCCAAACTTCGTAGCCAAT+TGG | 0.403863 | 1.2:-76460844 | None:intergenic |
| TTTGTCTAGTCAGAGCTTGC+TGG | 0.406910 | 1.2:+76461464 | MS.gene34397:CDS |
| AAGGAAAGATAAAATATATT+GGG | 0.415250 | 1.2:+76461164 | MS.gene34397:CDS |
| CAGGTGTCTAGGTTGGGATT+TGG | 0.416345 | 1.2:+76460363 | MS.gene34397:intron |
| ACTGGGTACCCAAGGTTTAG+AGG | 0.421560 | 1.2:+76460080 | MS.gene34397:CDS |
| AAAATTTACCTCTAAACCTT+GGG | 0.423446 | 1.2:-76460088 | None:intergenic |
| TCCCCAGCAATTTCCTCAAC+GGG | 0.432009 | 1.2:-76462421 | None:intergenic |
| TTCTCTCTATGCAATTACTT+TGG | 0.439392 | 1.2:-76462496 | None:intergenic |
| TCTCTATGCAATTACTTTGG+CGG | 0.441447 | 1.2:-76462493 | None:intergenic |
| TGCAGGAAAGTCAGTGGTAG+AGG | 0.445925 | 1.2:+76461440 | MS.gene34397:CDS |
| TTCAATGTCACGGGACCATA+AGG | 0.451962 | 1.2:-76461263 | None:intergenic |
| GCTTACACAAGAAGATTTGA+AGG | 0.464856 | 1.2:+76462381 | MS.gene34397:CDS |
| AAGAAATAATTCCACTCTGC+AGG | 0.468173 | 1.2:+76461287 | MS.gene34397:CDS |
| CAAACATGATAATGAAATCA+TGG | 0.469776 | 1.2:+76460506 | MS.gene34397:CDS |
| GAAAATTTACCTCTAAACCT+TGG | 0.472465 | 1.2:-76460089 | None:intergenic |
| TGGAATGCAGGTGTCTAGGT+TGG | 0.481219 | 1.2:+76460356 | MS.gene34397:intron |
| AGGTTGGGATTTGGATGTGG+AGG | 0.483229 | 1.2:+76460372 | MS.gene34397:CDS |
| CTATGAACGAATCAATGACT+TGG | 0.485970 | 1.2:+76461893 | MS.gene34397:CDS |
| CTCAAACAACTTGTAAATGA+AGG | 0.486296 | 1.2:+76461145 | MS.gene34397:CDS |
| TATTTCTTCTTCAATGTCAC+GGG | 0.490828 | 1.2:-76461272 | None:intergenic |
| ACTTGCAGAGAGCTTGGCAT+TGG | 0.491374 | 1.2:+76461381 | MS.gene34397:intron |
| TCAAGGAAGTATTCAATAGA+GGG | 0.491885 | 1.2:+76460448 | MS.gene34397:CDS |
| CGTTACTTTATCTGATGGCA+TGG | 0.494293 | 1.2:+76460865 | MS.gene34397:CDS |
| GCTGTGAAGCTAGTCTCAAC+CGG | 0.495009 | 1.2:+76460927 | MS.gene34397:CDS |
| TAATGAAATCATGGTTGGTA+AGG | 0.496217 | 1.2:+76460515 | MS.gene34397:CDS |
| GGAATGCAGGTGTCTAGGTT+GGG | 0.504771 | 1.2:+76460357 | MS.gene34397:intron |
| ATAAAGGCAGTACCAGGGAT+AGG | 0.507637 | 1.2:-76461987 | None:intergenic |
| TTGTGTACTTGCAGAGAGCT+TGG | 0.508860 | 1.2:+76461375 | MS.gene34397:intron |
| TTTGTGGAATGCAGGTGTCT+AGG | 0.515102 | 1.2:+76460352 | MS.gene34397:intron |
| GTTCCCGTTGAGGAAATTGC+TGG | 0.516063 | 1.2:+76462418 | MS.gene34397:CDS |
| AAGAACTTTGAAAACAACAT+TGG | 0.517205 | 1.2:+76462343 | MS.gene34397:CDS |
| TTCGATACATCAGATCTCTA+CGG | 0.518721 | 1.2:+76460480 | MS.gene34397:CDS |
| GCTCCCCTCTCACATGAAGA+TGG | 0.521397 | 1.2:+76460414 | MS.gene34397:CDS |
| TTATTTCTTCTTCAATGTCA+CGG | 0.524264 | 1.2:-76461273 | None:intergenic |
| TTTGGCGTTACTTTATCTGA+TGG | 0.527241 | 1.2:+76460860 | MS.gene34397:CDS |
| CATGATAATGAAATCATGGT+TGG | 0.532090 | 1.2:+76460510 | MS.gene34397:CDS |
| CTTCTCAATTAGCATTAGCA+TGG | 0.532747 | 1.2:+76461937 | MS.gene34397:CDS |
| CTCCCCAGCAATTTCCTCAA+CGG | 0.536860 | 1.2:-76462422 | None:intergenic |
| AGATGGATGTTCAATTATCA+AGG | 0.536945 | 1.2:+76460431 | MS.gene34397:CDS |
| TTCCCGTTGAGGAAATTGCT+GGG | 0.537080 | 1.2:+76462419 | MS.gene34397:CDS |
| TAAAGGCAGTACCAGGGATA+GGG | 0.538643 | 1.2:-76461986 | None:intergenic |
| CATAACAGGCTATGCATCCA+AGG | 0.541468 | 1.2:+76461835 | MS.gene34397:intron |
| CATGCTAATGCTAATTGAGA+AGG | 0.548715 | 1.2:-76461936 | None:intergenic |
| AGCACTCCCTCACATATTCA+GGG | 0.555636 | 1.2:-76460907 | None:intergenic |
| TTCTGAAGCAGTTCCCGTTG+AGG | 0.562114 | 1.2:+76462408 | MS.gene34397:CDS |
| ACATCCATCTTCATGTGAGA+GGG | 0.576652 | 1.2:-76460418 | None:intergenic |
| AACATCCATCTTCATGTGAG+AGG | 0.581548 | 1.2:-76460419 | None:intergenic |
| AGAGCTTGGCATTGGAATCG+TGG | 0.595615 | 1.2:+76461389 | MS.gene34397:CDS |
| AACGACATAATCCCTATCCC+TGG | 0.597106 | 1.2:+76461975 | MS.gene34397:CDS |
| AAAATATATTGGGTTGTCAG+AGG | 0.607927 | 1.2:+76461174 | MS.gene34397:CDS |
| AGGTACCCCTGAATATGTGA+GGG | 0.608935 | 1.2:+76460901 | MS.gene34397:CDS |
| AGAGTCAAACTGGGTACCCA+AGG | 0.612909 | 1.2:+76460072 | MS.gene34397:CDS |
| CAATATACTTGACATCAAGC+CGG | 0.614718 | 1.2:-76460946 | None:intergenic |
| AAGGTACCCCTGAATATGTG+AGG | 0.623139 | 1.2:+76460900 | MS.gene34397:CDS |
| TCCCGTTGAGGAAATTGCTG+GGG | 0.626472 | 1.2:+76462420 | MS.gene34397:CDS |
| CATCCATCTTCATGTGAGAG+GGG | 0.640878 | 1.2:-76460417 | None:intergenic |
| CAAGGAAGTATTCAATAGAG+GGG | 0.653836 | 1.2:+76460449 | MS.gene34397:CDS |
| TTAGCATGGCTTCTGCATCA+GGG | 0.655505 | 1.2:+76461951 | MS.gene34397:CDS |
| CAAGTCCCAAGAGTCAAACT+GGG | 0.662786 | 1.2:+76460063 | MS.gene34397:CDS |
| GCACTCCCTCACATATTCAG+GGG | 0.678614 | 1.2:-76460906 | None:intergenic |
| CAATTAATATACCTGCAGAG+TGG | 0.699441 | 1.2:-76461298 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTACTAATCAATAA+AGG | + | chr1.2:76462104-76462123 | MS.gene34397:intron | 10.0% |
| !! | AAGGAAAGATAAAATATATT+GGG | + | chr1.2:76461164-76461183 | MS.gene34397:CDS | 15.0% |
| !! | TGAAGAATATCTTATTATAA+TGG | + | chr1.2:76461531-76461550 | MS.gene34397:intron | 15.0% |
| !! | TGTAGAATTTCTTATTATAA+TGG | + | chr1.2:76461715-76461734 | MS.gene34397:intron | 15.0% |
| !! | TTATAACATGGTATAAATAT+AGG | + | chr1.2:76460728-76460747 | MS.gene34397:intron | 15.0% |
| !!! | TTGAAGATTTATTAGTTTAT+TGG | - | chr1.2:76460552-76460571 | None:intergenic | 15.0% |
| !! | AAAATACATAAGCATTTGTA+TGG | + | chr1.2:76460592-76460611 | MS.gene34397:intron | 20.0% |
| !! | AATTATTTAGATGTGACAAA+TGG | + | chr1.2:76460676-76460695 | MS.gene34397:intron | 20.0% |
| !! | ATAGTATATCACAATATCTT+TGG | + | chr1.2:76462455-76462474 | MS.gene34397:CDS | 20.0% |
| !! | ATATTTGTTTGATACCATAT+AGG | + | chr1.2:76462307-76462326 | MS.gene34397:intron | 20.0% |
| !! | GAAGGAAAGATAAAATATAT+TGG | + | chr1.2:76461163-76461182 | MS.gene34397:CDS | 20.0% |
| !! | GTTTGCAAATTGTAATAATT+TGG | + | chr1.2:76460614-76460633 | MS.gene34397:intron | 20.0% |
| !! | TATTATGAATGTATATCTGA+AGG | - | chr1.2:76460242-76460261 | None:intergenic | 20.0% |
| !! | TATTTGTTTGATACCATATA+GGG | + | chr1.2:76462308-76462327 | MS.gene34397:intron | 20.0% |
| !! | TTACTGATATCTTTATAACA+TGG | + | chr1.2:76460716-76460735 | MS.gene34397:intron | 20.0% |
| !! | TTTGTGGAAAAACAAATTTA+TGG | + | chr1.2:76460769-76460788 | MS.gene34397:intron | 20.0% |
| !!! | AGAAGAATATGATGATTTTT+TGG | + | chr1.2:76462019-76462038 | MS.gene34397:intron | 20.0% |
| !!! | TGTTTACACTATAATTTTTG+TGG | + | chr1.2:76460753-76460772 | MS.gene34397:intron | 20.0% |
| !!! | TTCTTCTGAAAGATAAATAA+AGG | - | chr1.2:76462006-76462025 | None:intergenic | 20.0% |
| ! | AAAACATCATAGCAATCATT+AGG | - | chr1.2:76460295-76460314 | None:intergenic | 25.0% |
| ! | AAAATTTACCTCTAAACCTT+GGG | - | chr1.2:76460091-76460110 | None:intergenic | 25.0% |
| ! | AAGATGAAACTTATGGATAA+AGG | + | chr1.2:76460214-76460233 | MS.gene34397:intron | 25.0% |
| ! | ATTAATTGCTTGACATATTC+AGG | + | chr1.2:76462050-76462069 | MS.gene34397:intron | 25.0% |
| ! | ATTCCACAAAATGAAAAAAC+AGG | - | chr1.2:76460342-76460361 | None:intergenic | 25.0% |
| ! | GAAGAATTCATTAAACATAG+TGG | + | chr1.2:76460177-76460196 | MS.gene34397:intron | 25.0% |
| ! | TAAGATAACCAAGTAAAATC+TGG | - | chr1.2:76462086-76462105 | None:intergenic | 25.0% |
| ! | TGTGAAAAACAAATGTTAAG+TGG | - | chr1.2:76460132-76460151 | None:intergenic | 25.0% |
| ! | TTCTTTCAAGATGAAACTTA+TGG | + | chr1.2:76460207-76460226 | MS.gene34397:intron | 25.0% |
| !! | AAGAACTTTGAAAACAACAT+TGG | + | chr1.2:76462343-76462362 | MS.gene34397:CDS | 25.0% |
| !! | ATCTATTTCCAGATTTTACT+TGG | + | chr1.2:76462075-76462094 | MS.gene34397:intron | 25.0% |
| !! | CAAACATGATAATGAAATCA+TGG | + | chr1.2:76460506-76460525 | MS.gene34397:CDS | 25.0% |
| !! | TTATTTCTTCTTCAATGTCA+CGG | - | chr1.2:76461276-76461295 | None:intergenic | 25.0% |
| AAAAAACAGGAGATACATGA+TGG | - | chr1.2:76460329-76460348 | None:intergenic | 30.0% | |
| AAGCTTACAGTTTCTTCAAT+TGG | - | chr1.2:76461007-76461026 | None:intergenic | 30.0% | |
| AAGGTTTACAGGAGAAAATT+TGG | + | chr1.2:76461854-76461873 | MS.gene34397:CDS | 30.0% | |
| AGATGGATGTTCAATTATCA+AGG | + | chr1.2:76460431-76460450 | MS.gene34397:CDS | 30.0% | |
| ATCATAGCAATCATTAGGAA+TGG | - | chr1.2:76460290-76460309 | None:intergenic | 30.0% | |
| ATGTTAAGTGGTTGACAATA+AGG | - | chr1.2:76460120-76460139 | None:intergenic | 30.0% | |
| CTCAAACAACTTGTAAATGA+AGG | + | chr1.2:76461145-76461164 | MS.gene34397:CDS | 30.0% | |
| CTTTAACATTGACCTCTTTA+TGG | + | chr1.2:76461110-76461129 | MS.gene34397:intron | 30.0% | |
| GAAAATTTACCTCTAAACCT+TGG | - | chr1.2:76460092-76460111 | None:intergenic | 30.0% | |
| GAGGAAAAATAACATTGATG+AGG | + | chr1.2:76461617-76461636 | MS.gene34397:intron | 30.0% | |
| TATTTCTTCTTCAATGTCAC+GGG | - | chr1.2:76461275-76461294 | None:intergenic | 30.0% | |
| TCTTCTTTCTGTAACATAAC+AGG | + | chr1.2:76461821-76461840 | MS.gene34397:intron | 30.0% | |
| TGGTCAAAATAACATTGATG+AGG | + | chr1.2:76461551-76461570 | MS.gene34397:intron | 30.0% | |
| TTAGGAATGGAGACAAAATT+TGG | - | chr1.2:76460277-76460296 | None:intergenic | 30.0% | |
| ! | AAAATATATTGGGTTGTCAG+AGG | + | chr1.2:76461174-76461193 | MS.gene34397:CDS | 30.0% |
| ! | AAATTTTCTCCTGTAAACCT+TGG | - | chr1.2:76461855-76461874 | None:intergenic | 30.0% |
| ! | CAGTATATGGTCAAGATTTT+AGG | - | chr1.2:76462232-76462251 | None:intergenic | 30.0% |
| ! | CATGATAATGAAATCATGGT+TGG | + | chr1.2:76460510-76460529 | MS.gene34397:CDS | 30.0% |
| ! | TAATGAAATCATGGTTGGTA+AGG | + | chr1.2:76460515-76460534 | MS.gene34397:CDS | 30.0% |
| ! | TGAATCTTTTCTTCTGTCTT+AGG | + | chr1.2:76460793-76460812 | MS.gene34397:intron | 30.0% |
| ! | TTTTTCATTTTGTGGAATGC+AGG | + | chr1.2:76460344-76460363 | MS.gene34397:intron | 30.0% |
| !! | ATCAAGGAAGTATTCAATAG+AGG | + | chr1.2:76460447-76460466 | MS.gene34397:CDS | 30.0% |
| !! | TCAAGGAAGTATTCAATAGA+GGG | + | chr1.2:76460448-76460467 | MS.gene34397:CDS | 30.0% |
| !!! | ATGTTATTTTTCCTCACTTC+AGG | - | chr1.2:76461612-76461631 | None:intergenic | 30.0% |
| !!! | TCTCCTGTTTTTTCATTTTG+TGG | + | chr1.2:76460336-76460355 | MS.gene34397:intron | 30.0% |
| AAGAAATAATTCCACTCTGC+AGG | + | chr1.2:76461287-76461306 | MS.gene34397:CDS | 35.0% | |
| AATAACATTGATGAGCTTGC+TGG | + | chr1.2:76461662-76461681 | MS.gene34397:intron | 35.0% | |
| ACTAAGTGTAGTACTAGTAG+AGG | - | chr1.2:76461041-76461060 | None:intergenic | 35.0% | |
| AGATAAATAAAGGCAGTACC+AGG | - | chr1.2:76461996-76462015 | None:intergenic | 35.0% | |
| AGTTCATCCTATTACTGCTT+TGG | + | chr1.2:76461228-76461247 | MS.gene34397:CDS | 35.0% | |
| ATTCAAAAGAAAATCCCTGC+AGG | - | chr1.2:76461796-76461815 | None:intergenic | 35.0% | |
| ATTGACCTCTTTATGGAAGA+TGG | + | chr1.2:76461117-76461136 | MS.gene34397:intron | 35.0% | |
| CAATATACTTGACATCAAGC+CGG | - | chr1.2:76460949-76460968 | None:intergenic | 35.0% | |
| CAATTAATATACCTGCAGAG+TGG | - | chr1.2:76461301-76461320 | None:intergenic | 35.0% | |
| CATCGAGAATTTACAAGTGT+TGG | - | chr1.2:76461082-76461101 | None:intergenic | 35.0% | |
| CATGCTAATGCTAATTGAGA+AGG | - | chr1.2:76461939-76461958 | None:intergenic | 35.0% | |
| CTATGAACGAATCAATGACT+TGG | + | chr1.2:76461893-76461912 | MS.gene34397:CDS | 35.0% | |
| CTTCTCAATTAGCATTAGCA+TGG | + | chr1.2:76461937-76461956 | MS.gene34397:CDS | 35.0% | |
| GAGATCTGATGTATCGAAAA+AGG | - | chr1.2:76460478-76460497 | None:intergenic | 35.0% | |
| GATAAATAAAGGCAGTACCA+GGG | - | chr1.2:76461995-76462014 | None:intergenic | 35.0% | |
| GCTTACACAAGAAGATTTGA+AGG | + | chr1.2:76462381-76462400 | MS.gene34397:CDS | 35.0% | |
| TATCCATCACTAACTTTGCT+TGG | + | chr1.2:76462178-76462197 | MS.gene34397:intron | 35.0% | |
| TCAGTTTAGTAGTCCCTATA+TGG | - | chr1.2:76462324-76462343 | None:intergenic | 35.0% | |
| TCCATTTCCAAAGCAGTAAT+AGG | - | chr1.2:76461238-76461257 | None:intergenic | 35.0% | |
| TGCAGTATCTACACAGTATA+TGG | - | chr1.2:76462245-76462264 | None:intergenic | 35.0% | |
| TTAAGTGGTTGACAATAAGG+AGG | - | chr1.2:76460117-76460136 | None:intergenic | 35.0% | |
| TTCGATACATCAGATCTCTA+CGG | + | chr1.2:76460480-76460499 | MS.gene34397:CDS | 35.0% | |
| ! | ATTTTTCCTCACTTCAGGAA+TGG | - | chr1.2:76461607-76461626 | None:intergenic | 35.0% |
| ! | TGGAAATGGAGTATTCCTTA+TGG | + | chr1.2:76461248-76461267 | MS.gene34397:CDS | 35.0% |
| ! | TTATCTGATGGCATGGTTTT+GGG | + | chr1.2:76460872-76460891 | MS.gene34397:CDS | 35.0% |
| ! | TTTATCTGATGGCATGGTTT+TGG | + | chr1.2:76460871-76460890 | MS.gene34397:CDS | 35.0% |
| ! | TTTGGCGTTACTTTATCTGA+TGG | + | chr1.2:76460860-76460879 | MS.gene34397:CDS | 35.0% |
| !! | AGTGATGGATATGTGAAAGT+AGG | - | chr1.2:76462169-76462188 | None:intergenic | 35.0% |
| !! | CAAGGAAGTATTCAATAGAG+GGG | + | chr1.2:76460449-76460468 | MS.gene34397:CDS | 35.0% |
| !! | TCCTATTACTGCTTTGGAAA+TGG | + | chr1.2:76461234-76461253 | MS.gene34397:CDS | 35.0% |
| AAAGAAAATCCCTGCAGGAA+TGG | - | chr1.2:76461791-76461810 | None:intergenic | 40.0% | |
| AACATCCATCTTCATGTGAG+AGG | - | chr1.2:76460422-76460441 | None:intergenic | 40.0% | |
| ACATCCATCTTCATGTGAGA+GGG | - | chr1.2:76460421-76460440 | None:intergenic | 40.0% | |
| GAATTAGTTCCATTCCTGCA+GGG | + | chr1.2:76461779-76461798 | MS.gene34397:intron | 40.0% | |
| TGAATTAGTTCCATTCCTGC+AGG | + | chr1.2:76461778-76461797 | MS.gene34397:intron | 40.0% | |
| TTACTTCCATTCCTGAAGTG+AGG | + | chr1.2:76461598-76461617 | MS.gene34397:intron | 40.0% | |
| TTTGGATGTGGAGGATTATC+TGG | + | chr1.2:76460381-76460400 | MS.gene34397:CDS | 40.0% | |
| ! | CGTTACTTTATCTGATGGCA+TGG | + | chr1.2:76460865-76460884 | MS.gene34397:CDS | 40.0% |
| !! | TATCTGATGGCATGGTTTTG+GGG | + | chr1.2:76460873-76460892 | MS.gene34397:CDS | 40.0% |
| !!! | CTTTTTTGCAGGAAAGTCAG+TGG | + | chr1.2:76461434-76461453 | MS.gene34397:CDS | 40.0% |
| !!! | TAGCCAATTGGACTTTTTCG+CGG | - | chr1.2:76460835-76460854 | None:intergenic | 40.0% |
| AACGACATAATCCCTATCCC+TGG | + | chr1.2:76461975-76461994 | MS.gene34397:CDS | 45.0% | |
| ACAAGTCCCAAGAGTCAAAC+TGG | + | chr1.2:76460062-76460081 | MS.gene34397:CDS | 45.0% | |
| AGCACTCCCTCACATATTCA+GGG | - | chr1.2:76460910-76460929 | None:intergenic | 45.0% | |
| AGGTACCCCTGAATATGTGA+GGG | + | chr1.2:76460901-76460920 | MS.gene34397:CDS | 45.0% | |
| ATAAAGGCAGTACCAGGGAT+AGG | - | chr1.2:76461990-76462009 | None:intergenic | 45.0% | |
| ATTAGCATGGCTTCTGCATC+AGG | + | chr1.2:76461950-76461969 | MS.gene34397:CDS | 45.0% | |
| CAAGTCCCAAGAGTCAAACT+GGG | + | chr1.2:76460063-76460082 | MS.gene34397:CDS | 45.0% | |
| CATAACAGGCTATGCATCCA+AGG | + | chr1.2:76461835-76461854 | MS.gene34397:intron | 45.0% | |
| CATCCATCTTCATGTGAGAG+GGG | - | chr1.2:76460420-76460439 | None:intergenic | 45.0% | |
| CTCCTCCATCTTCCATAAAG+AGG | - | chr1.2:76461125-76461144 | None:intergenic | 45.0% | |
| GACCTCTTTATGGAAGATGG+AGG | + | chr1.2:76461120-76461139 | MS.gene34397:intron | 45.0% | |
| GCTATGCATCCAAGGTTTAC+AGG | + | chr1.2:76461843-76461862 | MS.gene34397:CDS | 45.0% | |
| GTCCAATTGGCTACGAAGTT+TGG | + | chr1.2:76460842-76460861 | MS.gene34397:CDS | 45.0% | |
| GTGCCAAGCAAAGTTAGTGA+TGG | - | chr1.2:76462184-76462203 | None:intergenic | 45.0% | |
| TAAAGGCAGTACCAGGGATA+GGG | - | chr1.2:76461989-76462008 | None:intergenic | 45.0% | |
| TTAGCATGGCTTCTGCATCA+GGG | + | chr1.2:76461951-76461970 | MS.gene34397:CDS | 45.0% | |
| TTCAATGTCACGGGACCATA+AGG | - | chr1.2:76461266-76461285 | None:intergenic | 45.0% | |
| TTCCCGTTGAGGAAATTGCT+GGG | + | chr1.2:76462419-76462438 | MS.gene34397:CDS | 45.0% | |
| TTGTGTACTTGCAGAGAGCT+TGG | + | chr1.2:76461375-76461394 | MS.gene34397:intron | 45.0% | |
| TTTGTCTAGTCAGAGCTTGC+TGG | + | chr1.2:76461464-76461483 | MS.gene34397:CDS | 45.0% | |
| TTTGTGGAATGCAGGTGTCT+AGG | + | chr1.2:76460352-76460371 | MS.gene34397:intron | 45.0% | |
| ! | AAGGTACCCCTGAATATGTG+AGG | + | chr1.2:76460900-76460919 | MS.gene34397:CDS | 45.0% |
| ! | TCTAGGTTGGGATTTGGATG+TGG | + | chr1.2:76460369-76460388 | MS.gene34397:CDS | 45.0% |
| !!! | AGCCAATTGGACTTTTTCGC+GGG | - | chr1.2:76460834-76460853 | None:intergenic | 45.0% |
| !!! | ATCTGATGGCATGGTTTTGG+GGG | + | chr1.2:76460874-76460893 | MS.gene34397:CDS | 45.0% |
| ACTGGGTACCCAAGGTTTAG+AGG | + | chr1.2:76460080-76460099 | MS.gene34397:CDS | 50.0% | |
| ACTTGCAGAGAGCTTGGCAT+TGG | + | chr1.2:76461381-76461400 | MS.gene34397:intron | 50.0% | |
| AGAGTCAAACTGGGTACCCA+AGG | + | chr1.2:76460072-76460091 | MS.gene34397:CDS | 50.0% | |
| AGGTTGGGATTTGGATGTGG+AGG | + | chr1.2:76460372-76460391 | MS.gene34397:CDS | 50.0% | |
| CAGCACTCCCTCACATATTC+AGG | - | chr1.2:76460911-76460930 | None:intergenic | 50.0% | |
| CGCCAAACTTCGTAGCCAAT+TGG | - | chr1.2:76460847-76460866 | None:intergenic | 50.0% | |
| CTCCCCAGCAATTTCCTCAA+CGG | - | chr1.2:76462425-76462444 | None:intergenic | 50.0% | |
| GCACTCCCTCACATATTCAG+GGG | - | chr1.2:76460909-76460928 | None:intergenic | 50.0% | |
| GGAATGCAGGTGTCTAGGTT+GGG | + | chr1.2:76460357-76460376 | MS.gene34397:intron | 50.0% | |
| GGGTACCCAGTTTGACTCTT+GGG | - | chr1.2:76460071-76460090 | None:intergenic | 50.0% | |
| GTTCCCGTTGAGGAAATTGC+TGG | + | chr1.2:76462418-76462437 | MS.gene34397:CDS | 50.0% | |
| TCCCCAGCAATTTCCTCAAC+GGG | - | chr1.2:76462424-76462443 | None:intergenic | 50.0% | |
| TCCCCGCGAAAAAGTCCAAT+TGG | + | chr1.2:76460829-76460848 | MS.gene34397:CDS | 50.0% | |
| TCCCGTTGAGGAAATTGCTG+GGG | + | chr1.2:76462420-76462439 | MS.gene34397:CDS | 50.0% | |
| TGCAAAAAAGCCGCGACCAA+GGG | - | chr1.2:76461424-76461443 | None:intergenic | 50.0% | |
| TGCAGGAAAGTCAGTGGTAG+AGG | + | chr1.2:76461440-76461459 | MS.gene34397:CDS | 50.0% | |
| TGGAATGCAGGTGTCTAGGT+TGG | + | chr1.2:76460356-76460375 | MS.gene34397:intron | 50.0% | |
| TGGGTACCCAGTTTGACTCT+TGG | - | chr1.2:76460072-76460091 | None:intergenic | 50.0% | |
| ! | AGAGCTTGGCATTGGAATCG+TGG | + | chr1.2:76461389-76461408 | MS.gene34397:CDS | 50.0% |
| ! | CAGGTGTCTAGGTTGGGATT+TGG | + | chr1.2:76460363-76460382 | MS.gene34397:intron | 50.0% |
| ! | GCTGTGAAGCTAGTCTCAAC+CGG | + | chr1.2:76460927-76460946 | MS.gene34397:CDS | 50.0% |
| !! | TTCTGAAGCAGTTCCCGTTG+AGG | + | chr1.2:76462408-76462427 | MS.gene34397:CDS | 50.0% |
| !!! | GCCAATTGGACTTTTTCGCG+GGG | - | chr1.2:76460833-76460852 | None:intergenic | 50.0% |
| !!! | GGCATGGTTTTGGGGGTAAA+AGG | + | chr1.2:76460881-76460900 | MS.gene34397:CDS | 50.0% |
| CAAAAAAGCCGCGACCAAGG+GGG | - | chr1.2:76461422-76461441 | None:intergenic | 55.0% | |
| CTGCAAAAAAGCCGCGACCA+AGG | - | chr1.2:76461425-76461444 | None:intergenic | 55.0% | |
| GCAAAAAAGCCGCGACCAAG+GGG | - | chr1.2:76461423-76461442 | None:intergenic | 55.0% | |
| GCTCCCCTCTCACATGAAGA+TGG | + | chr1.2:76460414-76460433 | MS.gene34397:CDS | 55.0% | |
| !!! | CTTGGTCGCGGCTTTTTTGC+AGG | + | chr1.2:76461423-76461442 | MS.gene34397:CDS | 55.0% |
| ATCGTGGCATACAGCCCCCT+TGG | + | chr1.2:76461405-76461424 | MS.gene34397:CDS | 60.0% | |
| GCATACAGCCCCCTTGGTCG+CGG | + | chr1.2:76461411-76461430 | MS.gene34397:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 76460054 | 76462504 | 76460054 | ID=MS.gene34397 |
| chr1.2 | mRNA | 76460054 | 76462504 | 76460054 | ID=MS.gene34397.t1;Parent=MS.gene34397 |
| chr1.2 | exon | 76460054 | 76460101 | 76460054 | ID=MS.gene34397.t1.exon1;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76460054 | 76460101 | 76460054 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76460366 | 76460536 | 76460366 | ID=MS.gene34397.t1.exon2;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76460366 | 76460536 | 76460366 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76460815 | 76461018 | 76460815 | ID=MS.gene34397.t1.exon3;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76460815 | 76461018 | 76460815 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76461136 | 76461308 | 76461136 | ID=MS.gene34397.t1.exon4;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76461136 | 76461308 | 76461136 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76461389 | 76461485 | 76461389 | ID=MS.gene34397.t1.exon5;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76461389 | 76461485 | 76461389 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76461843 | 76461996 | 76461843 | ID=MS.gene34397.t1.exon6;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76461843 | 76461996 | 76461843 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| chr1.2 | exon | 76462329 | 76462504 | 76462329 | ID=MS.gene34397.t1.exon7;Parent=MS.gene34397.t1 |
| chr1.2 | CDS | 76462329 | 76462504 | 76462329 | ID=cds.MS.gene34397.t1;Parent=MS.gene34397.t1 |
| Gene Sequence |
| Protein sequence |
