Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060985.t1 | XP_013464448.2 | 98.2 | 113 | 2 | 0 | 1 | 113 | 1 | 113 | 4.20E-60 | 240.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060985.t1 | P52409 | 45.8 | 83 | 45 | 0 | 30 | 112 | 377 | 459 | 2.0e-18 | 93.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060985.t1 | I3SE25 | 98.2 | 113 | 2 | 0 | 1 | 113 | 1 | 113 | 3.0e-60 | 240.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052169 | MS.gene060985 | 0.825672 | 4.13E-54 | -1.69E-46 |
| MS.gene052308 | MS.gene060985 | 0.803339 | 3.65E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene060985 | 0.83133 | 1.77E-55 | -1.69E-46 |
| MS.gene054941 | MS.gene060985 | 0.82347 | 1.36E-53 | -1.69E-46 |
| MS.gene055308 | MS.gene060985 | 0.82109 | 4.86E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene060985 | 0.810984 | 8.78E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene060985 | 0.803298 | 3.73E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene060985 | 0.865957 | 4.05E-65 | -1.69E-46 |
| MS.gene057669 | MS.gene060985 | 0.832181 | 1.09E-55 | -1.69E-46 |
| MS.gene058853 | MS.gene060985 | 0.818506 | 1.89E-52 | -1.69E-46 |
| MS.gene059616 | MS.gene060985 | 0.817213 | 3.71E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene060985 | 0.805197 | 1.50E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene063489 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene06421 | 0.823167 | 1.60E-53 | -1.69E-46 |
| MS.gene060985 | MS.gene064328 | 0.810768 | 9.78E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene065292 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene060985 | MS.gene066026 | 0.815402 | 9.42E-52 | -1.69E-46 |
| MS.gene060985 | MS.gene21888 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene25797 | 0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene27811 | 0.812881 | 3.39E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene27812 | 0.807103 | 5.95E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene28867 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene28923 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene29215 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene060985 | MS.gene29939 | 0.80477 | 1.84E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene29940 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene29942 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene34397 | 0.825943 | 3.56E-54 | -1.69E-46 |
| MS.gene060985 | MS.gene44100 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene46636 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene060985 | MS.gene51554 | 0.803453 | 3.46E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene52113 | 0.834168 | 3.50E-56 | -1.69E-46 |
| MS.gene060985 | MS.gene52980 | 0.819683 | 1.02E-52 | -1.69E-46 |
| MS.gene060985 | MS.gene53408 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene57751 | 0.800836 | 1.20E-48 | -1.69E-46 |
| MS.gene060985 | MS.gene58754 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene60269 | 0.807859 | 4.11E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene61081 | 0.868344 | 7.00E-66 | -1.69E-46 |
| MS.gene060985 | MS.gene61684 | 0.802162 | 6.40E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene61745 | 0.877392 | 6.52E-69 | -1.69E-46 |
| MS.gene060985 | MS.gene65301 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene66043 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene67555 | 0.824552 | 7.59E-54 | -1.69E-46 |
| MS.gene060985 | MS.gene69722 | 0.812613 | 3.88E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene70403 | 0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene74328 | 0.808483 | 3.03E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene77563 | 0.805753 | 1.15E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene77904 | 0.813381 | 2.63E-51 | -1.69E-46 |
| MS.gene060985 | MS.gene88464 | 0.856868 | 2.40E-62 | -1.69E-46 |
| MS.gene060985 | MS.gene88616 | 0.833456 | 5.28E-56 | -1.69E-46 |
| MS.gene060985 | MS.gene89653 | 0.830314 | 3.15E-55 | -1.69E-46 |
| MS.gene060985 | MS.gene90781 | 0.805323 | 1.41E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene90842 | 0.823383 | 1.43E-53 | -1.69E-46 |
| MS.gene060985 | MS.gene91871 | 0.827883 | 1.22E-54 | -1.69E-46 |
| MS.gene060985 | MS.gene93762 | 0.801521 | 8.66E-49 | -1.69E-46 |
| MS.gene060985 | MS.gene94954 | 0.825244 | 5.21E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060985.t1 | MTR_2g072500 | 97.802 | 91 | 2 | 0 | 23 | 113 | 1 | 91 | 2.44e-65 | 192 |
| MS.gene060985.t1 | MTR_8g089400 | 42.268 | 97 | 53 | 2 | 19 | 113 | 27 | 122 | 2.41e-22 | 85.9 |
| MS.gene060985.t1 | MTR_8g089400 | 42.268 | 97 | 53 | 2 | 19 | 113 | 47 | 142 | 4.59e-22 | 85.5 |
| MS.gene060985.t1 | MTR_7g026340 | 48.193 | 83 | 42 | 1 | 29 | 110 | 364 | 446 | 2.69e-21 | 87.4 |
| MS.gene060985.t1 | MTR_8g085440 | 44.565 | 92 | 50 | 1 | 22 | 112 | 24 | 115 | 1.14e-20 | 80.5 |
| MS.gene060985.t1 | MTR_8g085400 | 41.441 | 111 | 56 | 4 | 1 | 106 | 1 | 107 | 4.38e-19 | 76.3 |
| MS.gene060985.t1 | MTR_8g085420 | 44.318 | 88 | 48 | 1 | 22 | 108 | 24 | 111 | 6.95e-19 | 76.6 |
| MS.gene060985.t1 | MTR_1g084820 | 45.161 | 93 | 48 | 3 | 17 | 108 | 408 | 498 | 4.18e-18 | 78.6 |
| MS.gene060985.t1 | MTR_1g084820 | 45.161 | 93 | 48 | 3 | 17 | 108 | 408 | 498 | 6.74e-18 | 78.2 |
| MS.gene060985.t1 | MTR_6g088885 | 41.758 | 91 | 49 | 2 | 25 | 112 | 365 | 454 | 8.96e-18 | 77.8 |
| MS.gene060985.t1 | MTR_4g083500 | 39.535 | 86 | 51 | 1 | 28 | 112 | 400 | 485 | 1.21e-17 | 77.4 |
| MS.gene060985.t1 | MTR_1g022160 | 40.449 | 89 | 52 | 1 | 25 | 112 | 386 | 474 | 2.30e-17 | 76.6 |
| MS.gene060985.t1 | MTR_3g116510 | 41.176 | 85 | 49 | 1 | 30 | 113 | 237 | 321 | 2.55e-17 | 75.9 |
| MS.gene060985.t1 | MTR_3g116510 | 41.176 | 85 | 49 | 1 | 30 | 113 | 371 | 455 | 3.37e-17 | 75.9 |
| MS.gene060985.t1 | MTR_3g083580 | 37.374 | 99 | 60 | 1 | 17 | 113 | 349 | 447 | 5.56e-17 | 75.5 |
| MS.gene060985.t1 | MTR_1g031900 | 36.634 | 101 | 60 | 2 | 17 | 113 | 346 | 446 | 7.77e-17 | 75.1 |
| MS.gene060985.t1 | MTR_1g031900 | 36.634 | 101 | 60 | 2 | 17 | 113 | 346 | 446 | 8.21e-17 | 75.1 |
| MS.gene060985.t1 | MTR_7g111600 | 45.882 | 85 | 43 | 2 | 30 | 112 | 160 | 243 | 1.03e-16 | 73.2 |
| MS.gene060985.t1 | MTR_8g085390 | 36.607 | 112 | 63 | 3 | 5 | 112 | 6 | 113 | 1.05e-16 | 72.0 |
| MS.gene060985.t1 | MTR_1g053320 | 43.529 | 85 | 46 | 2 | 27 | 110 | 371 | 454 | 1.11e-16 | 74.7 |
| MS.gene060985.t1 | MTR_4g069940 | 40.000 | 85 | 49 | 1 | 30 | 112 | 375 | 459 | 1.36e-16 | 74.3 |
| MS.gene060985.t1 | MTR_7g111600 | 45.882 | 85 | 43 | 2 | 30 | 112 | 160 | 243 | 1.55e-16 | 73.6 |
| MS.gene060985.t1 | MTR_5g078200 | 35.000 | 100 | 61 | 2 | 17 | 112 | 345 | 444 | 1.75e-16 | 73.9 |
| MS.gene060985.t1 | MTR_1g056640 | 40.206 | 97 | 55 | 2 | 17 | 110 | 392 | 488 | 1.75e-16 | 73.9 |
| MS.gene060985.t1 | MTR_5g078200 | 34.579 | 107 | 67 | 2 | 8 | 112 | 306 | 411 | 2.05e-16 | 73.9 |
| MS.gene060985.t1 | MTR_8g102340 | 35.294 | 102 | 63 | 2 | 13 | 112 | 318 | 418 | 2.83e-16 | 73.6 |
| MS.gene060985.t1 | MTR_7g111600 | 45.882 | 85 | 43 | 2 | 30 | 112 | 160 | 243 | 3.73e-16 | 72.4 |
| MS.gene060985.t1 | MTR_4g132280 | 39.080 | 87 | 51 | 1 | 28 | 112 | 380 | 466 | 7.11e-16 | 72.4 |
| MS.gene060985.t1 | MTR_3g065460 | 36.000 | 100 | 60 | 2 | 17 | 112 | 346 | 445 | 1.13e-15 | 71.6 |
| MS.gene060985.t1 | MTR_5g085580 | 38.095 | 84 | 50 | 1 | 29 | 110 | 381 | 464 | 1.62e-15 | 71.2 |
| MS.gene060985.t1 | MTR_5g091650 | 37.895 | 95 | 56 | 2 | 20 | 112 | 98 | 191 | 5.21e-15 | 67.8 |
| MS.gene060985.t1 | MTR_5g097420 | 32.432 | 111 | 67 | 2 | 4 | 112 | 10 | 114 | 5.98e-15 | 65.9 |
| MS.gene060985.t1 | MTR_5g091650 | 37.895 | 95 | 56 | 2 | 20 | 112 | 98 | 191 | 7.11e-15 | 68.6 |
| MS.gene060985.t1 | MTR_4g079530 | 37.500 | 88 | 53 | 1 | 27 | 112 | 34 | 121 | 1.18e-14 | 65.5 |
| MS.gene060985.t1 | MTR_4g109490 | 41.667 | 84 | 47 | 2 | 30 | 112 | 24 | 106 | 1.45e-14 | 67.0 |
| MS.gene060985.t1 | MTR_4g079530 | 37.500 | 88 | 53 | 1 | 27 | 112 | 34 | 121 | 2.19e-14 | 65.9 |
| MS.gene060985.t1 | MTR_1g022160 | 37.931 | 87 | 53 | 1 | 25 | 110 | 386 | 472 | 2.28e-14 | 67.8 |
| MS.gene060985.t1 | MTR_5g015720 | 39.326 | 89 | 51 | 1 | 27 | 112 | 326 | 414 | 6.64e-14 | 66.6 |
| MS.gene060985.t1 | MTR_3g048280 | 36.264 | 91 | 55 | 2 | 24 | 112 | 106 | 195 | 1.41e-13 | 64.3 |
| MS.gene060985.t1 | MTR_8g012400 | 36.264 | 91 | 48 | 3 | 28 | 112 | 372 | 458 | 1.54e-13 | 65.5 |
| MS.gene060985.t1 | MTR_8g012400 | 36.264 | 91 | 48 | 3 | 28 | 112 | 292 | 378 | 1.79e-13 | 65.5 |
| MS.gene060985.t1 | MTR_1g022160 | 37.805 | 82 | 50 | 1 | 25 | 105 | 386 | 467 | 2.19e-13 | 65.1 |
| MS.gene060985.t1 | MTR_1g116870 | 38.095 | 84 | 51 | 1 | 30 | 112 | 276 | 359 | 2.93e-13 | 64.7 |
| MS.gene060985.t1 | MTR_2g049670 | 42.353 | 85 | 47 | 2 | 30 | 113 | 158 | 241 | 1.22e-12 | 62.8 |
| MS.gene060985.t1 | MTR_4g112025 | 37.931 | 87 | 52 | 2 | 27 | 112 | 371 | 456 | 1.49e-12 | 62.8 |
| MS.gene060985.t1 | MTR_8g085720 | 36.538 | 104 | 62 | 2 | 13 | 112 | 345 | 448 | 1.59e-12 | 62.8 |
| MS.gene060985.t1 | MTR_3g082080 | 37.179 | 78 | 48 | 1 | 30 | 106 | 157 | 234 | 9.95e-12 | 59.7 |
| MS.gene060985.t1 | MTR_4g083070 | 34.545 | 110 | 61 | 5 | 6 | 112 | 4 | 105 | 1.30e-11 | 58.9 |
| MS.gene060985.t1 | MTR_4g133735 | 29.464 | 112 | 71 | 2 | 1 | 110 | 5 | 110 | 4.40e-11 | 55.8 |
| MS.gene060985.t1 | MTR_2g027560 | 34.940 | 83 | 53 | 1 | 30 | 112 | 369 | 450 | 7.63e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060985.t1 | AT1G78520 | 63.158 | 114 | 40 | 2 | 1 | 112 | 1 | 114 | 1.33e-47 | 148 |
| MS.gene060985.t1 | AT2G43670 | 50.427 | 117 | 53 | 2 | 1 | 112 | 1 | 117 | 2.32e-37 | 122 |
| MS.gene060985.t1 | AT2G43660 | 45.378 | 119 | 58 | 3 | 1 | 112 | 1 | 119 | 8.54e-29 | 101 |
| MS.gene060985.t1 | AT2G43660 | 44.915 | 118 | 59 | 2 | 1 | 112 | 1 | 118 | 3.28e-28 | 99.8 |
| MS.gene060985.t1 | AT3G28250 | 53.247 | 77 | 36 | 0 | 30 | 106 | 3 | 79 | 6.91e-27 | 96.3 |
| MS.gene060985.t1 | AT4G09462 | 43.590 | 117 | 58 | 3 | 1 | 113 | 1 | 113 | 3.51e-26 | 94.4 |
| MS.gene060985.t1 | AT4G09467 | 43.478 | 115 | 63 | 2 | 1 | 113 | 1 | 115 | 8.51e-26 | 93.6 |
| MS.gene060985.t1 | AT4G09464 | 43.478 | 115 | 63 | 2 | 1 | 113 | 1 | 115 | 8.51e-26 | 93.6 |
| MS.gene060985.t1 | AT4G09465 | 43.478 | 115 | 63 | 2 | 1 | 113 | 1 | 115 | 1.45e-25 | 92.8 |
| MS.gene060985.t1 | AT5G53600 | 41.935 | 93 | 54 | 0 | 20 | 112 | 19 | 111 | 1.03e-23 | 88.2 |
| MS.gene060985.t1 | AT4G09466 | 41.739 | 115 | 65 | 2 | 1 | 113 | 1 | 115 | 1.20e-23 | 88.2 |
| MS.gene060985.t1 | AT4G09090 | 42.105 | 114 | 64 | 2 | 1 | 112 | 1 | 114 | 6.33e-23 | 86.3 |
| MS.gene060985.t1 | AT1G66852 | 42.045 | 88 | 48 | 2 | 28 | 113 | 24 | 110 | 3.96e-21 | 81.3 |
| MS.gene060985.t1 | AT1G66870 | 41.379 | 87 | 49 | 1 | 28 | 112 | 24 | 110 | 6.22e-21 | 80.9 |
| MS.gene060985.t1 | AT1G66870 | 41.379 | 87 | 49 | 1 | 28 | 112 | 51 | 137 | 9.82e-21 | 81.3 |
| MS.gene060985.t1 | AT1G09460 | 48.387 | 93 | 46 | 2 | 20 | 112 | 128 | 218 | 2.27e-20 | 84.0 |
| MS.gene060985.t1 | AT4G16165 | 40.909 | 88 | 50 | 1 | 28 | 113 | 24 | 111 | 1.01e-19 | 77.8 |
| MS.gene060985.t1 | AT4G05430 | 38.542 | 96 | 56 | 2 | 19 | 112 | 13 | 107 | 1.29e-19 | 78.6 |
| MS.gene060985.t1 | AT4G05430 | 38.542 | 96 | 56 | 2 | 19 | 112 | 38 | 132 | 1.90e-19 | 78.6 |
| MS.gene060985.t1 | AT5G53610 | 38.614 | 101 | 62 | 0 | 10 | 110 | 8 | 108 | 9.49e-19 | 75.5 |
| MS.gene060985.t1 | AT5G63225 | 42.391 | 92 | 52 | 1 | 22 | 112 | 17 | 108 | 1.00e-18 | 75.5 |
| MS.gene060985.t1 | AT1G66855 | 34.783 | 115 | 68 | 2 | 1 | 113 | 2 | 111 | 4.08e-18 | 73.9 |
| MS.gene060985.t1 | AT2G05790 | 42.708 | 96 | 52 | 2 | 17 | 110 | 372 | 466 | 1.40e-17 | 77.0 |
| MS.gene060985.t1 | AT5G63240 | 36.667 | 90 | 53 | 1 | 27 | 112 | 37 | 126 | 2.41e-17 | 72.4 |
| MS.gene060985.t1 | AT4G29360 | 39.080 | 87 | 51 | 1 | 28 | 112 | 389 | 475 | 3.24e-17 | 76.3 |
| MS.gene060985.t1 | AT4G29360 | 39.080 | 87 | 51 | 1 | 28 | 112 | 399 | 485 | 3.41e-17 | 76.3 |
| MS.gene060985.t1 | AT1G11820 | 36.792 | 106 | 63 | 2 | 11 | 112 | 360 | 465 | 6.40e-17 | 75.1 |
| MS.gene060985.t1 | AT5G24318 | 37.079 | 89 | 55 | 1 | 25 | 112 | 367 | 455 | 7.56e-17 | 75.1 |
| MS.gene060985.t1 | AT4G34480 | 36.905 | 84 | 52 | 1 | 30 | 112 | 253 | 336 | 1.33e-16 | 74.3 |
| MS.gene060985.t1 | AT4G34480 | 36.905 | 84 | 52 | 1 | 30 | 112 | 364 | 447 | 1.62e-16 | 73.9 |
| MS.gene060985.t1 | AT5G24318 | 38.372 | 86 | 52 | 1 | 28 | 112 | 231 | 316 | 2.77e-16 | 72.8 |
| MS.gene060985.t1 | AT2G01630 | 35.000 | 100 | 61 | 2 | 17 | 112 | 345 | 444 | 2.88e-16 | 73.6 |
| MS.gene060985.t1 | AT4G05430 | 36.667 | 90 | 54 | 2 | 19 | 106 | 38 | 126 | 5.21e-16 | 68.9 |
| MS.gene060985.t1 | AT2G39640 | 37.000 | 100 | 59 | 2 | 15 | 110 | 341 | 440 | 6.30e-16 | 72.4 |
| MS.gene060985.t1 | AT2G39640 | 37.349 | 83 | 51 | 1 | 30 | 111 | 460 | 542 | 9.57e-16 | 72.0 |
| MS.gene060985.t1 | AT5G63230 | 39.535 | 86 | 51 | 1 | 28 | 112 | 24 | 109 | 7.40e-16 | 68.2 |
| MS.gene060985.t1 | AT5G55180 | 40.000 | 85 | 49 | 1 | 28 | 110 | 370 | 454 | 9.40e-16 | 72.0 |
| MS.gene060985.t1 | AT3G13560 | 38.889 | 90 | 53 | 1 | 25 | 112 | 357 | 446 | 1.01e-15 | 72.0 |
| MS.gene060985.t1 | AT3G13560 | 38.889 | 90 | 53 | 1 | 25 | 112 | 357 | 446 | 1.01e-15 | 72.0 |
| MS.gene060985.t1 | AT3G13560 | 38.889 | 90 | 53 | 1 | 25 | 112 | 357 | 446 | 1.01e-15 | 72.0 |
| MS.gene060985.t1 | AT3G13560 | 38.889 | 90 | 53 | 1 | 25 | 112 | 357 | 446 | 1.01e-15 | 72.0 |
| MS.gene060985.t1 | AT3G13560 | 38.889 | 90 | 53 | 1 | 25 | 112 | 357 | 446 | 1.01e-15 | 72.0 |
| MS.gene060985.t1 | AT3G58100 | 30.841 | 107 | 69 | 2 | 8 | 112 | 22 | 125 | 2.66e-15 | 68.2 |
| MS.gene060985.t1 | AT1G18650 | 33.628 | 113 | 65 | 2 | 1 | 112 | 1 | 104 | 4.99e-15 | 66.2 |
| MS.gene060985.t1 | AT1G66250 | 34.831 | 89 | 56 | 1 | 27 | 113 | 365 | 453 | 6.60e-15 | 69.7 |
| MS.gene060985.t1 | AT2G29735 | 36.036 | 111 | 68 | 2 | 5 | 112 | 6 | 116 | 9.41e-15 | 65.5 |
| MS.gene060985.t1 | AT3G58100 | 30.841 | 107 | 69 | 2 | 8 | 112 | 98 | 201 | 9.46e-15 | 68.2 |
| MS.gene060985.t1 | AT1G18650 | 33.628 | 113 | 65 | 2 | 1 | 112 | 1 | 104 | 1.25e-14 | 66.6 |
| MS.gene060985.t1 | AT3G55430 | 38.095 | 84 | 51 | 1 | 30 | 112 | 366 | 449 | 1.65e-14 | 68.6 |
| MS.gene060985.t1 | AT2G01630 | 35.106 | 94 | 57 | 2 | 17 | 106 | 345 | 438 | 2.89e-14 | 67.8 |
| MS.gene060985.t1 | AT2G30933 | 34.314 | 102 | 64 | 2 | 13 | 112 | 65 | 165 | 5.51e-14 | 65.5 |
| MS.gene060985.t1 | AT1G11820 | 36.000 | 100 | 60 | 2 | 11 | 106 | 360 | 459 | 1.53e-13 | 65.5 |
| MS.gene060985.t1 | AT1G29380 | 37.931 | 87 | 49 | 3 | 30 | 113 | 148 | 232 | 1.93e-13 | 64.7 |
| MS.gene060985.t1 | AT2G16230 | 34.524 | 84 | 54 | 1 | 30 | 112 | 366 | 449 | 2.04e-13 | 65.5 |
| MS.gene060985.t1 | AT4G26830 | 39.286 | 84 | 49 | 1 | 29 | 110 | 370 | 453 | 2.13e-13 | 65.1 |
| MS.gene060985.t1 | AT4G26830 | 39.286 | 84 | 49 | 1 | 29 | 110 | 366 | 449 | 2.17e-13 | 65.1 |
| MS.gene060985.t1 | AT5G55180 | 39.506 | 81 | 47 | 1 | 28 | 106 | 370 | 450 | 2.31e-13 | 65.1 |
| MS.gene060985.t1 | AT1G79480 | 36.905 | 84 | 52 | 1 | 30 | 112 | 311 | 394 | 2.37e-13 | 65.1 |
| MS.gene060985.t1 | AT1G79480 | 36.905 | 84 | 52 | 1 | 30 | 112 | 310 | 393 | 2.54e-13 | 65.1 |
| MS.gene060985.t1 | AT1G29380 | 38.372 | 86 | 48 | 3 | 30 | 112 | 148 | 231 | 2.73e-13 | 64.7 |
| MS.gene060985.t1 | AT5G67460 | 35.556 | 90 | 56 | 1 | 25 | 112 | 288 | 377 | 3.08e-13 | 64.7 |
| MS.gene060985.t1 | AT5G63250 | 36.782 | 87 | 51 | 1 | 30 | 112 | 42 | 128 | 3.82e-13 | 61.6 |
| MS.gene060985.t1 | AT5G35740 | 34.091 | 88 | 55 | 2 | 28 | 112 | 28 | 115 | 6.10e-13 | 60.8 |
| MS.gene060985.t1 | AT5G64790 | 34.483 | 87 | 55 | 2 | 27 | 112 | 366 | 451 | 6.39e-13 | 63.9 |
| MS.gene060985.t1 | AT4G13600 | 36.905 | 84 | 52 | 1 | 30 | 112 | 61 | 144 | 1.15e-12 | 62.0 |
| MS.gene060985.t1 | AT5G56590 | 35.294 | 85 | 53 | 1 | 30 | 112 | 369 | 453 | 1.23e-12 | 63.2 |
| MS.gene060985.t1 | AT5G24318 | 33.735 | 83 | 54 | 1 | 25 | 106 | 367 | 449 | 1.33e-12 | 62.8 |
| MS.gene060985.t1 | AT2G30933 | 34.375 | 96 | 60 | 2 | 13 | 106 | 65 | 159 | 2.93e-12 | 59.7 |
| MS.gene060985.t1 | AT2G30933 | 34.375 | 96 | 60 | 2 | 13 | 106 | 65 | 159 | 2.93e-12 | 59.7 |
| MS.gene060985.t1 | AT4G17180 | 38.554 | 83 | 50 | 1 | 30 | 112 | 359 | 440 | 3.84e-12 | 61.6 |
| MS.gene060985.t1 | AT3G24330 | 39.286 | 84 | 49 | 2 | 28 | 110 | 380 | 462 | 7.42e-12 | 60.8 |
| MS.gene060985.t1 | AT1G29380 | 38.750 | 80 | 44 | 3 | 30 | 106 | 148 | 225 | 9.28e-12 | 59.7 |
| MS.gene060985.t1 | AT1G29380 | 38.750 | 80 | 44 | 3 | 30 | 106 | 148 | 225 | 9.28e-12 | 59.7 |
| MS.gene060985.t1 | AT2G42930 | 35.106 | 94 | 59 | 2 | 14 | 106 | 24 | 116 | 1.21e-11 | 57.8 |
| MS.gene060985.t1 | AT5G67460 | 35.714 | 84 | 52 | 1 | 25 | 106 | 288 | 371 | 4.45e-11 | 58.5 |
| MS.gene060985.t1 | AT5G61130 | 31.765 | 85 | 57 | 1 | 29 | 112 | 20 | 104 | 9.17e-11 | 56.6 |
Find 19 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATATGATCATGGTTAA+TGG | 0.289090 | 2.3:+23910731 | MS.gene060985:CDS |
| AGATCGATAATAGAGATTCA+TGG | 0.408516 | 2.3:-23910999 | None:intergenic |
| GGAATATGATCATGGTTAAT+GGG | 0.423180 | 2.3:+23910732 | MS.gene060985:CDS |
| AATCTCTATTATCGATCTAA+AGG | 0.467046 | 2.3:+23911004 | MS.gene060985:CDS |
| TATGATCATGGTTAATGGGC+AGG | 0.497346 | 2.3:+23910736 | MS.gene060985:CDS |
| GATCTAAAGGAACGGACCAT+TGG | 0.511484 | 2.3:+23911017 | MS.gene060985:CDS |
| ATTTGAGAGACAAGAAAAGA+AGG | 0.533155 | 2.3:-23910051 | None:intergenic |
| CTCTGAAATCGCAGTTCCAA+TGG | 0.540263 | 2.3:-23911033 | None:intergenic |
| GAGAAGAGGTAGTTTAGCCA+TGG | 0.544546 | 2.3:-23910023 | None:intergenic |
| AGTGTTGCTTGATCTGATGA+AGG | 0.544549 | 2.3:-23910872 | None:intergenic |
| GATTGCAGAATTCTTCAGAA+AGG | 0.545548 | 2.3:+23910929 | MS.gene060985:CDS |
| AGAGCAAGCATAATTGAGGT+TGG | 0.555744 | 2.3:-23910900 | None:intergenic |
| CATTGGAACTGCGATTTCAG+AGG | 0.562954 | 2.3:+23911034 | MS.gene060985:CDS |
| TGCAGGAGGGAATATGATCA+TGG | 0.565880 | 2.3:+23910724 | MS.gene060985:intron |
| ATAATAGAGATTCATGGCGA+TGG | 0.571419 | 2.3:-23910993 | None:intergenic |
| CGTGAGAGCAAGCATAATTG+AGG | 0.578215 | 2.3:-23910904 | None:intergenic |
| GATTCATGGCGATGGAAGCG+CGG | 0.609487 | 2.3:-23910985 | None:intergenic |
| CTATTATCGATCTAAAGGAA+CGG | 0.620629 | 2.3:+23911009 | MS.gene060985:CDS |
| AACACAGAAAACTTGGTGCG+TGG | 0.648923 | 2.3:+23910844 | MS.gene060985:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATATTTAAT+TGG | - | chr2.3:23910612-23910631 | None:intergenic | 0.0% |
| !!! | AAATATTTTTTTTTTTTTTT+GGG | + | chr2.3:23910615-23910634 | MS.gene060985:intron | 0.0% |
| !!! | AATTTTTTTTTTTTTAATTT+TGG | - | chr2.3:23910282-23910301 | None:intergenic | 0.0% |
| !!! | TAAATATTTTTTTTTTTTTT+TGG | + | chr2.3:23910614-23910633 | MS.gene060985:intron | 0.0% |
| !!! | TAATTTATATATATTTTTTA+GGG | - | chr2.3:23910582-23910601 | None:intergenic | 0.0% |
| !! | AAAAATATTTAATTGGTTAA+TGG | - | chr2.3:23910605-23910624 | None:intergenic | 10.0% |
| !! | TATTGAGATAAATTATTATA+AGG | - | chr2.3:23910458-23910477 | None:intergenic | 10.0% |
| !! | AAATTATGTTCAAATTTAAC+CGG | + | chr2.3:23910331-23910350 | MS.gene060985:intron | 15.0% |
| !!! | AAATTACTAACATTTTCTTT+TGG | - | chr2.3:23910432-23910451 | None:intergenic | 15.0% |
| !!! | GTTAAATTTGAACATAATTT+TGG | - | chr2.3:23910331-23910350 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTAGGGAAAT+TGG | - | chr2.3:23910575-23910594 | None:intergenic | 15.0% |
| !! | GCATAATAATACTCATTATA+AGG | - | chr2.3:23910245-23910264 | None:intergenic | 20.0% |
| !! | TAATTGATATCACTAAACAT+TGG | - | chr2.3:23910508-23910527 | None:intergenic | 20.0% |
| !!! | ATGTAATTTGCAAAGTAATA+TGG | + | chr2.3:23910403-23910422 | MS.gene060985:intron | 20.0% |
| ! | AATCTCTATTATCGATCTAA+AGG | + | chr2.3:23911004-23911023 | MS.gene060985:CDS | 25.0% |
| ! | CCAAAAATTAGAACTATGAT+TGG | - | chr2.3:23911178-23911197 | None:intergenic | 25.0% |
| ! | GAGACAAACAAATTTAAAGA+AGG | - | chr2.3:23910103-23910122 | None:intergenic | 25.0% |
| ! | GTCATATCAAACTTGTAAAT+TGG | - | chr2.3:23911346-23911365 | None:intergenic | 25.0% |
| ! | TATGAAAAACACAGAAAACT+TGG | + | chr2.3:23910837-23910856 | MS.gene060985:intron | 25.0% |
| ! | TCATAATATTGATGTTCACA+TGG | + | chr2.3:23911278-23911297 | MS.gene060985:intron | 25.0% |
| ! | TTTATTACTAGAATCTGCTT+TGG | + | chr2.3:23910206-23910225 | MS.gene060985:intron | 25.0% |
| !!! | CCAATCATAGTTCTAATTTT+TGG | + | chr2.3:23911175-23911194 | MS.gene060985:intron | 25.0% |
| !!! | TTTTTAGGGAAATTGGTTAA+TGG | - | chr2.3:23910568-23910587 | None:intergenic | 25.0% |
| AAAAGAAGGAAAAAGAGAAG+AGG | - | chr2.3:23910040-23910059 | None:intergenic | 30.0% | |
| AATGAGTTATGTGACTTACT+TGG | - | chr2.3:23911085-23911104 | None:intergenic | 30.0% | |
| AGATCGATAATAGAGATTCA+TGG | - | chr2.3:23911002-23911021 | None:intergenic | 30.0% | |
| ATTTGAGAGACAAGAAAAGA+AGG | - | chr2.3:23910054-23910073 | None:intergenic | 30.0% | |
| CAAACTTGTAAATTGGTTGA+TGG | - | chr2.3:23911339-23911358 | None:intergenic | 30.0% | |
| CAACATTGTAACTGCAATTA+TGG | + | chr2.3:23911226-23911245 | MS.gene060985:intron | 30.0% | |
| CTATTATCGATCTAAAGGAA+CGG | + | chr2.3:23911009-23911028 | MS.gene060985:CDS | 30.0% | |
| GGAATATGATCATGGTTAAT+GGG | + | chr2.3:23910732-23910751 | MS.gene060985:CDS | 30.0% | |
| GTAATGTACTACATCTACAT+TGG | + | chr2.3:23910154-23910173 | MS.gene060985:intron | 30.0% | |
| ! | TTTTTCTCATTCTGAATTGC+AGG | + | chr2.3:23911386-23911405 | MS.gene060985:intron | 30.0% |
| !!! | CTGGTCTCATTTTGTTTTTT+TGG | + | chr2.3:23910178-23910197 | MS.gene060985:intron | 30.0% |
| !!! | TGGTTGATGGTTTTAAATTG+CGG | - | chr2.3:23911326-23911345 | None:intergenic | 30.0% |
| ATAATAGAGATTCATGGCGA+TGG | - | chr2.3:23910996-23911015 | None:intergenic | 35.0% | |
| GATTGCAGAATTCTTCAGAA+AGG | + | chr2.3:23910929-23910948 | MS.gene060985:CDS | 35.0% | |
| GGGAATATGATCATGGTTAA+TGG | + | chr2.3:23910731-23910750 | MS.gene060985:CDS | 35.0% | |
| TCATTCTGAATTGCAGGTTA+TGG | + | chr2.3:23911392-23911411 | MS.gene060985:intron | 35.0% | |
| TTGTTTAAGTGATCTGAGTC+CGG | - | chr2.3:23910353-23910372 | None:intergenic | 35.0% | |
| ! | CTTTTCTTGTCTCTCAAATC+AGG | + | chr2.3:23910055-23910074 | MS.gene060985:CDS | 35.0% |
| !! | TATGATTGGTTTCGATGTCA+AGG | - | chr2.3:23911164-23911183 | None:intergenic | 35.0% |
| ACAAGCAAATGAAGTCGATG+CGG | - | chr2.3:23911252-23911271 | None:intergenic | 40.0% | |
| AGAGCAAGCATAATTGAGGT+TGG | - | chr2.3:23910903-23910922 | None:intergenic | 40.0% | |
| GTACTACATCTACATTGGTC+TGG | + | chr2.3:23910159-23910178 | MS.gene060985:intron | 40.0% | |
| GTTCACATGGTAACTACAAC+TGG | + | chr2.3:23911291-23911310 | MS.gene060985:intron | 40.0% | |
| TGTTGCATAGACCGCAATTA+TGG | - | chr2.3:23911208-23911227 | None:intergenic | 40.0% | |
| TTGGACTGCAACCATAATTG+CGG | + | chr2.3:23911194-23911213 | MS.gene060985:intron | 40.0% | |
| ! | TATGATCATGGTTAATGGGC+AGG | + | chr2.3:23910736-23910755 | MS.gene060985:CDS | 40.0% |
| !! | AGATTTTCAGGACTAGAGCA+GGG | - | chr2.3:23910959-23910978 | None:intergenic | 40.0% |
| !! | AGTGTTGCTTGATCTGATGA+AGG | - | chr2.3:23910875-23910894 | None:intergenic | 40.0% |
| CACATGGTAACTACAACTGG+TGG | + | chr2.3:23911294-23911313 | MS.gene060985:intron | 45.0% | |
| CATTGGAACTGCGATTTCAG+AGG | + | chr2.3:23911034-23911053 | MS.gene060985:CDS | 45.0% | |
| CGTGAGAGCAAGCATAATTG+AGG | - | chr2.3:23910907-23910926 | None:intergenic | 45.0% | |
| CTCCTGCACATGTCAAAAGA+GGG | - | chr2.3:23910712-23910731 | None:intergenic | 45.0% | |
| GATCTAAAGGAACGGACCAT+TGG | + | chr2.3:23911017-23911036 | MS.gene060985:CDS | 45.0% | |
| TGCAGGAGGGAATATGATCA+TGG | + | chr2.3:23910724-23910743 | MS.gene060985:intron | 45.0% | |
| ! | CTCTTTTGACATGTGCAGGA+GGG | + | chr2.3:23910711-23910730 | MS.gene060985:intron | 45.0% |
| ! | TTCCCTCTTTTGACATGTGC+AGG | + | chr2.3:23910707-23910726 | MS.gene060985:intron | 45.0% |
| !! | AACACAGAAAACTTGGTGCG+TGG | + | chr2.3:23910844-23910863 | MS.gene060985:intron | 45.0% |
| !! | CTCTGAAATCGCAGTTCCAA+TGG | - | chr2.3:23911036-23911055 | None:intergenic | 45.0% |
| !! | GAGATTTTCAGGACTAGAGC+AGG | - | chr2.3:23910960-23910979 | None:intergenic | 45.0% |
| !! | GATTTTCAGGACTAGAGCAG+GGG | - | chr2.3:23910958-23910977 | None:intergenic | 45.0% |
| !!! | GTAATTTATATATATTTTTT+AGG | - | chr2.3:23910583-23910602 | None:intergenic | 5.0% |
| CCTCCTGCACATGTCAAAAG+AGG | - | chr2.3:23910713-23910732 | None:intergenic | 50.0% | |
| ! | CCTCTTTTGACATGTGCAGG+AGG | + | chr2.3:23910710-23910729 | MS.gene060985:intron | 50.0% |
| ! | GCGCGGTTCATGAGATTTTC+AGG | - | chr2.3:23910971-23910990 | None:intergenic | 50.0% |
| GATTCATGGCGATGGAAGCG+CGG | - | chr2.3:23910988-23911007 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 23910025 | 23911433 | 23910025 | ID=MS.gene060985 |
| chr2.3 | mRNA | 23910025 | 23911433 | 23910025 | ID=MS.gene060985.t1;Parent=MS.gene060985 |
| chr2.3 | exon | 23910025 | 23910076 | 23910025 | ID=MS.gene060985.t1.exon1;Parent=MS.gene060985.t1 |
| chr2.3 | CDS | 23910025 | 23910076 | 23910025 | ID=cds.MS.gene060985.t1;Parent=MS.gene060985.t1 |
| chr2.3 | exon | 23910729 | 23910757 | 23910729 | ID=MS.gene060985.t1.exon2;Parent=MS.gene060985.t1 |
| chr2.3 | CDS | 23910729 | 23910757 | 23910729 | ID=cds.MS.gene060985.t1;Parent=MS.gene060985.t1 |
| chr2.3 | exon | 23910851 | 23911085 | 23910851 | ID=MS.gene060985.t1.exon3;Parent=MS.gene060985.t1 |
| chr2.3 | CDS | 23910851 | 23911085 | 23910851 | ID=cds.MS.gene060985.t1;Parent=MS.gene060985.t1 |
| chr2.3 | exon | 23911408 | 23911433 | 23911408 | ID=MS.gene060985.t1.exon4;Parent=MS.gene060985.t1 |
| chr2.3 | CDS | 23911408 | 23911433 | 23911408 | ID=cds.MS.gene060985.t1;Parent=MS.gene060985.t1 |
| Gene Sequence |
| Protein sequence |
