Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34417.t1 | XP_003592376.1 | 96.7 | 242 | 8 | 0 | 1 | 242 | 1 | 242 | 1.80E-129 | 471.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34417.t1 | Q50EK3 | 47.0 | 234 | 120 | 2 | 13 | 242 | 8 | 241 | 2.0e-55 | 217.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34417.t1 | G7ID37 | 96.7 | 242 | 8 | 0 | 1 | 242 | 1 | 242 | 1.3e-129 | 471.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05415 | MS.gene34417 | 0.804442 | 2.16E-49 | -1.69E-46 |
MS.gene058426 | MS.gene34417 | 0.820519 | 6.57E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34417.t1 | MTR_1g102220 | 96.694 | 242 | 8 | 0 | 1 | 242 | 1 | 242 | 7.82e-174 | 488 |
MS.gene34417.t1 | MTR_8g035680 | 64.851 | 202 | 71 | 0 | 41 | 242 | 47 | 248 | 9.03e-96 | 290 |
MS.gene34417.t1 | MTR_8g035760 | 64.851 | 202 | 71 | 0 | 41 | 242 | 47 | 248 | 7.54e-94 | 285 |
MS.gene34417.t1 | MTR_1g102390 | 90.840 | 131 | 12 | 0 | 1 | 131 | 1 | 131 | 1.42e-87 | 256 |
MS.gene34417.t1 | MTR_8g035860 | 53.695 | 203 | 94 | 0 | 40 | 242 | 39 | 241 | 5.65e-72 | 228 |
MS.gene34417.t1 | MTR_8g035820 | 52.217 | 203 | 97 | 0 | 40 | 242 | 39 | 241 | 8.79e-70 | 223 |
MS.gene34417.t1 | MTR_8g035810 | 50.980 | 204 | 99 | 1 | 40 | 242 | 39 | 242 | 1.90e-68 | 216 |
MS.gene34417.t1 | MTR_8g035810 | 50.980 | 204 | 99 | 1 | 40 | 242 | 39 | 242 | 1.14e-67 | 216 |
MS.gene34417.t1 | MTR_8g035810 | 50.980 | 204 | 99 | 1 | 40 | 242 | 39 | 242 | 3.36e-67 | 216 |
MS.gene34417.t1 | MTR_8g035780 | 49.261 | 203 | 103 | 0 | 40 | 242 | 40 | 242 | 6.50e-65 | 210 |
MS.gene34417.t1 | MTR_8g046580 | 47.917 | 192 | 86 | 1 | 40 | 231 | 13 | 190 | 2.43e-57 | 184 |
MS.gene34417.t1 | MTR_5g019140 | 42.512 | 207 | 118 | 1 | 36 | 242 | 40 | 245 | 1.23e-51 | 176 |
MS.gene34417.t1 | MTR_4g119660 | 40.529 | 227 | 133 | 2 | 16 | 242 | 6 | 230 | 1.69e-51 | 175 |
MS.gene34417.t1 | MTR_1g102210 | 90.588 | 85 | 8 | 0 | 158 | 242 | 37 | 121 | 2.07e-45 | 155 |
MS.gene34417.t1 | MTR_8g035680 | 60.396 | 101 | 40 | 0 | 142 | 242 | 1 | 101 | 9.51e-40 | 140 |
MS.gene34417.t1 | MTR_3g080580 | 35.407 | 209 | 125 | 5 | 42 | 242 | 43 | 249 | 9.97e-34 | 127 |
MS.gene34417.t1 | MTR_1g070345 | 35.096 | 208 | 126 | 6 | 40 | 239 | 41 | 247 | 1.30e-33 | 127 |
MS.gene34417.t1 | MTR_7g088330 | 35.096 | 208 | 127 | 4 | 40 | 239 | 40 | 247 | 2.05e-33 | 126 |
MS.gene34417.t1 | MTR_1g070365 | 33.636 | 220 | 134 | 6 | 28 | 239 | 32 | 247 | 9.85e-33 | 124 |
MS.gene34417.t1 | MTR_4g075110 | 35.656 | 244 | 134 | 11 | 13 | 242 | 47 | 281 | 2.99e-32 | 123 |
MS.gene34417.t1 | MTR_8g030590 | 34.259 | 216 | 127 | 7 | 40 | 242 | 31 | 244 | 6.73e-30 | 117 |
MS.gene34417.t1 | MTR_7g406990 | 35.079 | 191 | 117 | 4 | 58 | 242 | 67 | 256 | 3.80e-29 | 114 |
MS.gene34417.t1 | MTR_1g037560 | 37.805 | 164 | 98 | 3 | 82 | 242 | 112 | 274 | 7.68e-29 | 114 |
MS.gene34417.t1 | MTR_5g070010 | 37.654 | 162 | 97 | 3 | 84 | 242 | 87 | 247 | 1.69e-28 | 112 |
MS.gene34417.t1 | MTR_7g096340 | 29.048 | 210 | 141 | 5 | 40 | 242 | 40 | 248 | 1.10e-27 | 110 |
MS.gene34417.t1 | MTR_8g098435 | 30.417 | 240 | 152 | 7 | 16 | 242 | 7 | 244 | 4.00e-27 | 108 |
MS.gene34417.t1 | MTR_1g037550 | 36.842 | 171 | 100 | 5 | 76 | 242 | 108 | 274 | 6.82e-27 | 108 |
MS.gene34417.t1 | MTR_3g463060 | 33.645 | 214 | 127 | 7 | 43 | 242 | 40 | 252 | 8.99e-27 | 108 |
MS.gene34417.t1 | MTR_4g054920 | 32.353 | 204 | 120 | 5 | 55 | 242 | 64 | 265 | 4.47e-25 | 103 |
MS.gene34417.t1 | MTR_7g096320 | 29.048 | 210 | 141 | 5 | 40 | 242 | 41 | 249 | 1.20e-24 | 102 |
MS.gene34417.t1 | MTR_1g060550 | 31.959 | 194 | 125 | 4 | 54 | 242 | 65 | 256 | 1.77e-23 | 98.6 |
MS.gene34417.t1 | MTR_7g029275 | 29.070 | 258 | 154 | 8 | 2 | 239 | 3 | 251 | 1.28e-22 | 96.3 |
MS.gene34417.t1 | MTR_6g004630 | 27.184 | 206 | 140 | 6 | 42 | 239 | 36 | 239 | 2.24e-22 | 95.5 |
MS.gene34417.t1 | MTR_2g086040 | 31.606 | 193 | 125 | 4 | 55 | 242 | 61 | 251 | 4.75e-22 | 94.7 |
MS.gene34417.t1 | MTR_8g088470 | 32.121 | 165 | 107 | 4 | 78 | 239 | 69 | 231 | 9.22e-20 | 87.8 |
MS.gene34417.t1 | MTR_6g004670 | 28.302 | 159 | 109 | 4 | 84 | 239 | 83 | 239 | 1.53e-19 | 87.4 |
MS.gene34417.t1 | MTR_6g004610 | 27.879 | 165 | 114 | 4 | 78 | 239 | 37 | 199 | 2.00e-19 | 87.0 |
MS.gene34417.t1 | MTR_1g036130 | 29.108 | 213 | 133 | 9 | 43 | 242 | 35 | 242 | 1.10e-18 | 84.7 |
MS.gene34417.t1 | MTR_7g033570 | 29.327 | 208 | 130 | 7 | 43 | 239 | 34 | 235 | 2.52e-18 | 84.0 |
MS.gene34417.t1 | MTR_6g004590 | 27.317 | 205 | 139 | 7 | 43 | 239 | 38 | 240 | 1.51e-17 | 81.6 |
MS.gene34417.t1 | MTR_7g033580 | 27.451 | 204 | 139 | 5 | 43 | 239 | 34 | 235 | 5.46e-17 | 80.1 |
MS.gene34417.t1 | MTR_6g004600 | 25.424 | 236 | 163 | 9 | 15 | 239 | 7 | 240 | 6.78e-17 | 79.7 |
MS.gene34417.t1 | MTR_1g035790 | 29.518 | 166 | 101 | 5 | 84 | 239 | 80 | 239 | 6.13e-16 | 77.0 |
MS.gene34417.t1 | MTR_2g061910 | 44.048 | 84 | 43 | 1 | 82 | 161 | 72 | 155 | 1.20e-15 | 72.4 |
MS.gene34417.t1 | MTR_1g035670 | 26.066 | 211 | 142 | 7 | 43 | 242 | 35 | 242 | 2.34e-15 | 75.1 |
MS.gene34417.t1 | MTR_1g050362 | 28.834 | 163 | 110 | 4 | 82 | 239 | 76 | 237 | 3.13e-15 | 74.7 |
MS.gene34417.t1 | MTR_1g035760 | 26.471 | 170 | 119 | 4 | 78 | 242 | 74 | 242 | 3.33e-15 | 74.7 |
MS.gene34417.t1 | MTR_1g036200 | 27.751 | 209 | 136 | 7 | 43 | 239 | 32 | 237 | 2.25e-14 | 72.4 |
MS.gene34417.t1 | MTR_1g035800 | 28.994 | 169 | 102 | 5 | 82 | 239 | 78 | 239 | 9.68e-14 | 70.5 |
MS.gene34417.t1 | MTR_1g036010 | 27.962 | 211 | 133 | 10 | 43 | 239 | 35 | 240 | 1.03e-13 | 70.5 |
MS.gene34417.t1 | MTR_1g035860 | 26.220 | 164 | 115 | 4 | 84 | 242 | 86 | 248 | 2.87e-13 | 68.9 |
MS.gene34417.t1 | MTR_2g061750 | 26.257 | 179 | 114 | 5 | 80 | 242 | 13 | 189 | 1.03e-12 | 65.5 |
MS.gene34417.t1 | MTR_2g061740 | 26.257 | 179 | 114 | 5 | 80 | 242 | 13 | 189 | 1.16e-12 | 65.1 |
MS.gene34417.t1 | MTR_1g035750 | 25.238 | 210 | 146 | 6 | 43 | 242 | 34 | 242 | 4.22e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34417.t1 | AT2G45510 | 50.980 | 204 | 100 | 0 | 39 | 242 | 38 | 241 | 9.38e-66 | 212 |
MS.gene34417.t1 | AT2G44890 | 48.529 | 204 | 105 | 0 | 39 | 242 | 38 | 241 | 1.17e-62 | 204 |
MS.gene34417.t1 | AT2G44890 | 48.529 | 204 | 105 | 0 | 39 | 242 | 38 | 241 | 1.61e-62 | 204 |
MS.gene34417.t1 | AT1G69500 | 44.000 | 200 | 111 | 1 | 43 | 242 | 32 | 230 | 2.53e-53 | 180 |
MS.gene34417.t1 | AT3G56630 | 36.967 | 211 | 124 | 4 | 40 | 242 | 32 | 241 | 3.55e-37 | 136 |
MS.gene34417.t1 | AT1G34540 | 35.545 | 211 | 127 | 4 | 40 | 242 | 32 | 241 | 1.10e-34 | 129 |
MS.gene34417.t1 | AT1G63710 | 33.191 | 235 | 144 | 5 | 17 | 239 | 8 | 241 | 3.51e-32 | 123 |
MS.gene34417.t1 | AT5G23190 | 38.650 | 163 | 94 | 4 | 84 | 242 | 112 | 272 | 9.40e-29 | 114 |
MS.gene34417.t1 | AT3G01900 | 33.810 | 210 | 130 | 4 | 40 | 242 | 33 | 240 | 1.05e-28 | 113 |
MS.gene34417.t1 | AT1G01600 | 31.839 | 223 | 138 | 6 | 32 | 242 | 24 | 244 | 1.21e-28 | 113 |
MS.gene34417.t1 | AT5G58860 | 31.818 | 242 | 147 | 6 | 18 | 242 | 7 | 247 | 1.75e-28 | 112 |
MS.gene34417.t1 | AT2G45970 | 33.028 | 218 | 133 | 6 | 37 | 242 | 28 | 244 | 5.43e-28 | 111 |
MS.gene34417.t1 | AT3G48520 | 38.537 | 205 | 118 | 4 | 42 | 239 | 39 | 242 | 6.40e-28 | 111 |
MS.gene34417.t1 | AT5G63450 | 39.024 | 205 | 115 | 5 | 46 | 242 | 45 | 247 | 9.45e-28 | 110 |
MS.gene34417.t1 | AT5G08250 | 35.111 | 225 | 128 | 9 | 29 | 242 | 52 | 269 | 1.08e-27 | 110 |
MS.gene34417.t1 | AT5G63450 | 39.024 | 205 | 115 | 5 | 46 | 242 | 103 | 305 | 1.37e-27 | 110 |
MS.gene34417.t1 | AT4G00360 | 30.962 | 239 | 151 | 7 | 16 | 242 | 8 | 244 | 1.48e-27 | 110 |
MS.gene34417.t1 | AT5G08250 | 37.805 | 164 | 94 | 4 | 82 | 242 | 49 | 207 | 1.61e-27 | 110 |
MS.gene34417.t1 | AT2G23180 | 38.750 | 160 | 91 | 5 | 84 | 239 | 83 | 239 | 2.20e-26 | 107 |
MS.gene34417.t1 | AT2G27690 | 34.021 | 194 | 122 | 4 | 54 | 242 | 48 | 240 | 7.36e-26 | 105 |
MS.gene34417.t1 | AT1G24540 | 32.850 | 207 | 131 | 5 | 43 | 242 | 47 | 252 | 1.18e-25 | 105 |
MS.gene34417.t1 | AT4G39490 | 32.843 | 204 | 128 | 6 | 43 | 239 | 37 | 238 | 2.38e-24 | 101 |
MS.gene34417.t1 | AT1G47620 | 35.220 | 159 | 98 | 4 | 84 | 239 | 90 | 246 | 2.38e-23 | 98.6 |
MS.gene34417.t1 | AT4G32170 | 30.583 | 206 | 136 | 5 | 40 | 242 | 39 | 240 | 3.59e-23 | 97.8 |
MS.gene34417.t1 | AT4G39480 | 34.146 | 164 | 103 | 4 | 82 | 242 | 80 | 241 | 1.32e-22 | 96.3 |
MS.gene34417.t1 | AT4G39510 | 29.864 | 221 | 137 | 7 | 28 | 239 | 26 | 237 | 1.99e-22 | 95.9 |
MS.gene34417.t1 | AT2G21910 | 29.187 | 209 | 135 | 6 | 40 | 239 | 33 | 237 | 1.33e-21 | 93.6 |
MS.gene34417.t1 | AT1G13150 | 31.193 | 218 | 120 | 7 | 43 | 242 | 43 | 248 | 1.36e-21 | 93.6 |
MS.gene34417.t1 | AT4G39500 | 31.579 | 209 | 130 | 6 | 40 | 239 | 44 | 248 | 4.11e-21 | 92.0 |
MS.gene34417.t1 | AT4G39500 | 31.000 | 200 | 131 | 5 | 43 | 239 | 3 | 198 | 6.09e-21 | 91.3 |
MS.gene34417.t1 | AT3G26125 | 31.401 | 207 | 134 | 6 | 43 | 242 | 50 | 255 | 7.26e-21 | 91.3 |
MS.gene34417.t1 | AT5G52320 | 30.392 | 204 | 133 | 6 | 43 | 239 | 38 | 239 | 1.80e-20 | 90.1 |
MS.gene34417.t1 | AT5G52320 | 30.392 | 204 | 133 | 6 | 43 | 239 | 38 | 239 | 2.00e-20 | 90.1 |
MS.gene34417.t1 | AT1G57750 | 36.025 | 161 | 98 | 4 | 82 | 239 | 80 | 238 | 3.08e-20 | 89.4 |
MS.gene34417.t1 | AT1G57750 | 36.025 | 161 | 98 | 4 | 82 | 239 | 80 | 238 | 4.32e-20 | 88.6 |
MS.gene34417.t1 | AT1G13140 | 33.333 | 162 | 104 | 3 | 84 | 242 | 95 | 255 | 4.91e-20 | 89.0 |
MS.gene34417.t1 | AT1G13140 | 33.333 | 159 | 102 | 3 | 84 | 239 | 95 | 252 | 5.46e-20 | 88.6 |
MS.gene34417.t1 | AT1G65340 | 30.622 | 209 | 132 | 8 | 43 | 242 | 38 | 242 | 1.16e-19 | 87.8 |
MS.gene34417.t1 | AT5G02900 | 28.155 | 206 | 114 | 7 | 43 | 239 | 27 | 207 | 9.25e-16 | 76.3 |
Find 38 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGTATTCAAAGTTATTCT+TGG | 0.293617 | 1.2:-76239470 | MS.gene34417:CDS |
GATGGTATATTTACGGTAGA+TGG | 0.312691 | 1.2:-76239991 | MS.gene34417:CDS |
GCGACGAACTTCTCAAACTA+TGG | 0.323090 | 1.2:-76240162 | MS.gene34417:CDS |
AGTTATTCTTGGTGTAGAAT+TGG | 0.340611 | 1.2:-76239459 | MS.gene34417:CDS |
ACCAACTGTTCAACTTTCAT+AGG | 0.350668 | 1.2:-76240296 | MS.gene34417:CDS |
TTCGGTATGTTAACTTTCTC+TGG | 0.350954 | 1.2:-76239361 | MS.gene34417:CDS |
TCTAATGCAGTAAAACTTGC+AGG | 0.357842 | 1.2:-76239883 | MS.gene34417:CDS |
CAGCTCAATAATATTGTTTG+AGG | 0.362699 | 1.2:+76239840 | None:intergenic |
CTGCTTCCGTTCCAATGTTC+AGG | 0.366407 | 1.2:+76239324 | None:intergenic |
AAATTGTGTGCCTTCTCTAT+AGG | 0.369224 | 1.2:+76239421 | None:intergenic |
AAACCAATTGCTATTAGTAT+TGG | 0.373497 | 1.2:+76240402 | None:intergenic |
CTAATAGCAATTGGTTTAGC+TGG | 0.377106 | 1.2:-76240396 | MS.gene34417:CDS |
TAGTGTCTTGGAAGATCTAC+TGG | 0.378771 | 1.2:-76240016 | MS.gene34417:CDS |
AGAAGATATCACCCTGTTGC+TGG | 0.388193 | 1.2:-76240330 | MS.gene34417:CDS |
TGCTAATATTGAGCATATAC+TGG | 0.391657 | 1.2:-76240184 | MS.gene34417:CDS |
CTAGAGTTGATTTCATGAAT+AGG | 0.396179 | 1.2:+76239495 | None:intergenic |
ACTGGGAGATGGTATATTTA+CGG | 0.398877 | 1.2:-76239998 | MS.gene34417:CDS |
TGCAAGACTGTGCCAGCAAC+AGG | 0.402398 | 1.2:+76240318 | None:intergenic |
TTTCCAATACTAATAGCAAT+TGG | 0.433923 | 1.2:-76240405 | MS.gene34417:CDS |
AAACAATATTATTGAGCTGC+AGG | 0.444568 | 1.2:-76239836 | MS.gene34417:intron |
CTAGTGCTGCTATTATGTTT+CGG | 0.472343 | 1.2:-76239379 | MS.gene34417:CDS |
GTAGATCTTCCAAGACACTA+TGG | 0.493363 | 1.2:+76240019 | None:intergenic |
AAAAGAGGTTTCAGTGCAAA+GGG | 0.493820 | 1.2:+76240426 | None:intergenic |
GTATGTTAACTTTCTCTGGA+AGG | 0.494361 | 1.2:-76239357 | MS.gene34417:CDS |
AGTATATGCTCAATATTAGC+AGG | 0.517359 | 1.2:+76240186 | None:intergenic |
GCCTATGAAAGTTGAACAGT+TGG | 0.526008 | 1.2:+76240295 | None:intergenic |
GTTCAGCGGTTCCTGAACAT+TGG | 0.545891 | 1.2:-76239335 | MS.gene34417:CDS |
TTGGTATCACCATAGTGTCT+TGG | 0.550621 | 1.2:-76240028 | MS.gene34417:CDS |
TTGGAAGATCTACTGGGAGA+TGG | 0.578969 | 1.2:-76240009 | MS.gene34417:CDS |
ACTTTCTCTGGAAGGTTCAG+CGG | 0.583854 | 1.2:-76239349 | MS.gene34417:CDS |
CTAATGCAGTAAAACTTGCA+GGG | 0.601753 | 1.2:-76239882 | MS.gene34417:CDS |
GCGGTTCCTGAACATTGGAA+CGG | 0.622828 | 1.2:-76239330 | MS.gene34417:CDS |
ATGTGTGGAACCTATAGAGA+AGG | 0.623638 | 1.2:-76239431 | MS.gene34417:CDS |
GAACTTCTCAAACTATGGCA+AGG | 0.651954 | 1.2:-76240157 | MS.gene34417:intron |
AGTGTCTTGGAAGATCTACT+GGG | 0.669253 | 1.2:-76240015 | MS.gene34417:CDS |
TTACGGTAGATGGAGAGAAG+TGG | 0.674772 | 1.2:-76239981 | MS.gene34417:CDS |
GCAAGACTGTGCCAGCAACA+GGG | 0.702160 | 1.2:+76240319 | None:intergenic |
GTAGAATTGGACACAATGTG+TGG | 0.744927 | 1.2:-76239446 | MS.gene34417:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAATAATTATGATATGT+TGG | + | chr1.2:76240098-76240117 | None:intergenic | 15.0% |
!! | AGTATTAAATTTACTACTAC+TGG | + | chr1.2:76240138-76240157 | None:intergenic | 20.0% |
! | CAAGCAAAAGAAAAACTTAT+AGG | - | chr1.2:76239512-76239531 | MS.gene34417:intron | 25.0% |
! | TCTGTATTCAAAGTTATTCT+TGG | - | chr1.2:76240290-76240309 | MS.gene34417:CDS | 25.0% |
! | TGTCTTATATAAAGTGACAA+GGG | + | chr1.2:76240038-76240057 | None:intergenic | 25.0% |
! | TTCAAGAGGTTATATAGTTA+GGG | + | chr1.2:76240010-76240029 | None:intergenic | 25.0% |
! | TTGTCTTATATAAAGTGACA+AGG | + | chr1.2:76240039-76240058 | None:intergenic | 25.0% |
! | TTTCAAGAGGTTATATAGTT+AGG | + | chr1.2:76240011-76240030 | None:intergenic | 25.0% |
! | TTTCCAATACTAATAGCAAT+TGG | - | chr1.2:76239355-76239374 | MS.gene34417:CDS | 25.0% |
!! | AAACCAATTGCTATTAGTAT+TGG | + | chr1.2:76239361-76239380 | None:intergenic | 25.0% |
!!! | GTTTTAGTAACTATGAGTTT+GGG | + | chr1.2:76239693-76239712 | None:intergenic | 25.0% |
!!! | TGTTTTAGTAACTATGAGTT+TGG | + | chr1.2:76239694-76239713 | None:intergenic | 25.0% |
AAAACATCTTCATCTATTGC+AGG | - | chr1.2:76239708-76239727 | MS.gene34417:intron | 30.0% | |
AAACAATATTATTGAGCTGC+AGG | - | chr1.2:76239924-76239943 | MS.gene34417:CDS | 30.0% | |
AAACATCTTCATCTATTGCA+GGG | - | chr1.2:76239709-76239728 | MS.gene34417:intron | 30.0% | |
AATCTGCATATCTTGCTTAT+TGG | - | chr1.2:76240237-76240256 | MS.gene34417:CDS | 30.0% | |
AGTATATGCTCAATATTAGC+AGG | + | chr1.2:76239577-76239596 | None:intergenic | 30.0% | |
CAGCTCAATAATATTGTTTG+AGG | + | chr1.2:76239923-76239942 | None:intergenic | 30.0% | |
TGCTAATATTGAGCATATAC+TGG | - | chr1.2:76239576-76239595 | MS.gene34417:intron | 30.0% | |
! | AAGTTTTTCTTTTGCTTGTG+AGG | + | chr1.2:76239510-76239529 | None:intergenic | 30.0% |
! | AGTTATTCTTGGTGTAGAAT+TGG | - | chr1.2:76240301-76240320 | MS.gene34417:CDS | 30.0% |
! | CTAGAGTTGATTTCATGAAT+AGG | + | chr1.2:76240268-76240287 | None:intergenic | 30.0% |
! | GCTATTAGTATTGGAAAAAG+AGG | + | chr1.2:76239352-76239371 | None:intergenic | 30.0% |
!! | GGTTTTATCATCAAAATCCA+TGG | - | chr1.2:76239385-76239404 | MS.gene34417:CDS | 30.0% |
AAAAAGAGGTTTCAGTGCAA+AGG | + | chr1.2:76239338-76239357 | None:intergenic | 35.0% | |
AAAAGAGGTTTCAGTGCAAA+GGG | + | chr1.2:76239337-76239356 | None:intergenic | 35.0% | |
AAATTGTGTGCCTTCTCTAT+AGG | + | chr1.2:76240342-76240361 | None:intergenic | 35.0% | |
ACCAACTGTTCAACTTTCAT+AGG | - | chr1.2:76239464-76239483 | MS.gene34417:CDS | 35.0% | |
ACTGGGAGATGGTATATTTA+CGG | - | chr1.2:76239762-76239781 | MS.gene34417:intron | 35.0% | |
AGAGGTTATATAGTTAGGGA+CGG | + | chr1.2:76240006-76240025 | None:intergenic | 35.0% | |
CTAATGCAGTAAAACTTGCA+GGG | - | chr1.2:76239878-76239897 | MS.gene34417:CDS | 35.0% | |
GATCATATACTTAGAGACAG+AGG | - | chr1.2:76240196-76240215 | MS.gene34417:CDS | 35.0% | |
GATGGTATATTTACGGTAGA+TGG | - | chr1.2:76239769-76239788 | MS.gene34417:intron | 35.0% | |
GTATGTTAACTTTCTCTGGA+AGG | - | chr1.2:76240403-76240422 | MS.gene34417:CDS | 35.0% | |
TCTAATGCAGTAAAACTTGC+AGG | - | chr1.2:76239877-76239896 | MS.gene34417:CDS | 35.0% | |
TCTCAAAAAATCTACTGCCA+TGG | + | chr1.2:76239405-76239424 | None:intergenic | 35.0% | |
TGACAAGGGAAAATTTCAAG+AGG | + | chr1.2:76240024-76240043 | None:intergenic | 35.0% | |
TTCGGTATGTTAACTTTCTC+TGG | - | chr1.2:76240399-76240418 | MS.gene34417:CDS | 35.0% | |
! | CTAATAGCAATTGGTTTAGC+TGG | - | chr1.2:76239364-76239383 | MS.gene34417:CDS | 35.0% |
! | CTAGTGCTGCTATTATGTTT+CGG | - | chr1.2:76240381-76240400 | MS.gene34417:CDS | 35.0% |
AGTGTCTTGGAAGATCTACT+GGG | - | chr1.2:76239745-76239764 | MS.gene34417:intron | 40.0% | |
ATCTTCATCTATTGCAGGGT+TGG | - | chr1.2:76239713-76239732 | MS.gene34417:intron | 40.0% | |
ATGTGTGGAACCTATAGAGA+AGG | - | chr1.2:76240329-76240348 | MS.gene34417:CDS | 40.0% | |
GAACTTCTCAAACTATGGCA+AGG | - | chr1.2:76239603-76239622 | MS.gene34417:intron | 40.0% | |
GACAGAGGTAGTAACAATCT+TGG | - | chr1.2:76240211-76240230 | MS.gene34417:CDS | 40.0% | |
GCCTATGAAAGTTGAACAGT+TGG | + | chr1.2:76239468-76239487 | None:intergenic | 40.0% | |
GTAGAATTGGACACAATGTG+TGG | - | chr1.2:76240314-76240333 | MS.gene34417:CDS | 40.0% | |
GTAGATCTTCCAAGACACTA+TGG | + | chr1.2:76239744-76239763 | None:intergenic | 40.0% | |
TAGTGTCTTGGAAGATCTAC+TGG | - | chr1.2:76239744-76239763 | MS.gene34417:intron | 40.0% | |
TGCATATCTTGCTTATTGGC+AGG | - | chr1.2:76240241-76240260 | MS.gene34417:CDS | 40.0% | |
TTGGTATCACCATAGTGTCT+TGG | - | chr1.2:76239732-76239751 | MS.gene34417:intron | 40.0% | |
! | GCTGCAGGTAAAATTTTGCT+TGG | - | chr1.2:76239939-76239958 | MS.gene34417:CDS | 40.0% |
AAAGCGAGAATGTTCCACCT+AGG | - | chr1.2:76239662-76239681 | MS.gene34417:intron | 45.0% | |
AGAAGATATCACCCTGTTGC+TGG | - | chr1.2:76239430-76239449 | MS.gene34417:CDS | 45.0% | |
GAGAATGTTCCACCTAGGTT+TGG | - | chr1.2:76239667-76239686 | MS.gene34417:intron | 45.0% | |
GCGACGAACTTCTCAAACTA+TGG | - | chr1.2:76239598-76239617 | MS.gene34417:intron | 45.0% | |
GGTTATATAGTTAGGGACGG+AGG | + | chr1.2:76240003-76240022 | None:intergenic | 45.0% | |
TATGAGTTTGGGCCAAACCT+AGG | + | chr1.2:76239682-76239701 | None:intergenic | 45.0% | |
TTACGGTAGATGGAGAGAAG+TGG | - | chr1.2:76239779-76239798 | MS.gene34417:intron | 45.0% | |
TTGGAAGATCTACTGGGAGA+TGG | - | chr1.2:76239751-76239770 | MS.gene34417:intron | 45.0% | |
! | ACTTTCTCTGGAAGGTTCAG+CGG | - | chr1.2:76240411-76240430 | MS.gene34417:CDS | 45.0% |
CTGCTTCCGTTCCAATGTTC+AGG | + | chr1.2:76240439-76240458 | None:intergenic | 50.0% | |
GCGGTTCCTGAACATTGGAA+CGG | - | chr1.2:76240430-76240449 | MS.gene34417:CDS | 50.0% | |
GTTCAGCGGTTCCTGAACAT+TGG | - | chr1.2:76240425-76240444 | MS.gene34417:CDS | 50.0% | |
GAGTTTGGGCCAAACCTAGG+TGG | + | chr1.2:76239679-76239698 | None:intergenic | 55.0% | |
GCAAGACTGTGCCAGCAACA+GGG | + | chr1.2:76239444-76239463 | None:intergenic | 55.0% | |
TGCAAGACTGTGCCAGCAAC+AGG | + | chr1.2:76239445-76239464 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 76239316 | 76240466 | 76239316 | ID=MS.gene34417 |
chr1.2 | mRNA | 76239316 | 76240466 | 76239316 | ID=MS.gene34417.t1;Parent=MS.gene34417 |
chr1.2 | exon | 76240158 | 76240466 | 76240158 | ID=MS.gene34417.t1.exon1;Parent=MS.gene34417.t1 |
chr1.2 | CDS | 76240158 | 76240466 | 76240158 | ID=cds.MS.gene34417.t1;Parent=MS.gene34417.t1 |
chr1.2 | exon | 76239837 | 76240052 | 76239837 | ID=MS.gene34417.t1.exon2;Parent=MS.gene34417.t1 |
chr1.2 | CDS | 76239837 | 76240052 | 76239837 | ID=cds.MS.gene34417.t1;Parent=MS.gene34417.t1 |
chr1.2 | exon | 76239316 | 76239519 | 76239316 | ID=MS.gene34417.t1.exon3;Parent=MS.gene34417.t1 |
chr1.2 | CDS | 76239316 | 76239519 | 76239316 | ID=cds.MS.gene34417.t1;Parent=MS.gene34417.t1 |
Gene Sequence |
Protein sequence |